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Mol Cell Biol. 1992 June; 12(6): 2749-2757
Instability of simple sequence DNA in Saccharomyces cerevisiae.
S T Henderson and
T D Petes
Department of Molecular Genetics and Cell Biology, University of Chicago, Illinois 60637.
ABSTRACT
All eukaryotic genomes thus far examined contain simple sequence repeats. A particularly common simple sequence in many organisms (including humans) consists of tracts of alternating GT residues on one strand. Allelic poly(GT) tracts are often of different lengths in different individuals, indicating that they are likely to be unstable. We examined the instability of poly(GT) and poly(G) tracts in the yeast Saccharomyces cerevisiae. We found that these tracts were dramatically unstable, altering length at a minimal rate of 10(-4) events per division. Most of the changes involved one or two repeat unit additions or deletions, although one alteration involved an interaction with the yeast telomeres.
Mol Cell Biol. 1992 June; 12(6): 2749-2757
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-
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-
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-
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-
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[Abstract]
[Full Text]
-
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-
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[Abstract]
[Full Text]
-
Studamire, B., Quach, T., Alani, E.
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18: 7590-7601
[Abstract]
[Full Text]
-
Jackson, A. L., Chen, R., Loeb, L. A.
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95: 12468-12473
[Abstract]
[Full Text]
-
Kruglyak, S., Durrett, R. T., Schug, M. D., Aquadro, C. F.
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95: 10774-10778
[Abstract]
[Full Text]
-
Morel, P., Reverdy, C., Ehrlich, B. M. S. D., Cassuto, E., Cassuto, E.
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95: 10003-10008
[Abstract]
[Full Text]
-
van Belkum, A., Scherer, S., van Alphen, L., Verbrugh, H.
(1998). Short-Sequence DNA Repeats in Prokaryotic Genomes. Microbiol. Mol. Biol. Rev.
62: 275-293
[Abstract]
[Full Text]
-
Kokoska, R. J., Stefanovic, L., Tran, H. T., Resnick, M. A., Gordenin, D. A., Petes, T. D.
(1998). Destabilization of Yeast Micro- and Minisatellite DNA Sequences by Mutations Affecting a Nuclease Involved in Okazaki Fragment Processing (rad27) and DNA Polymerase delta (pol3-t). Mol. Cell. Biol.
18: 2779-2788
[Abstract]
[Full Text]
-
Field, D., Wills, C.
(1998). Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc. Natl. Acad. Sci. USA
95: 1647-1652
[Abstract]
[Full Text]
-
Johnson, R. E., Kovvali, G. K., Prakash, L., Prakash, S.
(1996). Requirement of the Yeast MSH3 and MSH6 Genes for MSH2-dependent Genomic Stability. J. Biol. Chem.
271: 7285-7288
[Abstract]
[Full Text]
-
Johnson, R., Kovvali, G., Prakash, L, Prakash, S
(1995). Requirement of the yeast RTH1 5' to 3' exonuclease for the stability of simple repetitive DNA. Science
269: 238-240
[Abstract]
-
Fisher, M. C., Koenig, G. L., White, T. J., San-Blas, G., Negroni, R., Alvarez, I. G., Wanke, B., Taylor, J. W.
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[Full Text]
Copyright © 1992 by the American Society for Microbiology. All rights reserved.