Previous Article | Next Article 
Mol Cell Biol, April 1998, p. 1774-1782, Vol. 18, No. 4
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
SWI-SNF Complex Participation in Transcriptional
Activation at a Step Subsequent to Activator Binding
Michael P.
Ryan,
Rachael
Jones, and
Randall H.
Morse*
Molecular Genetics Program, Wadsworth Center,
New York State Department of Health, and State University of New
York School of Public Health, Albany, New York 12201-2002
Received 12 September 1997/Returned for modification 23 October
1997/Accepted 6 January 1998
The SWI-SNF complex in yeast and related complexes in higher
eukaryotes have been implicated in assisting gene activation by
overcoming the repressive effects of chromatin. We show that the
ability of the transcriptional activator GAL4 to bind to a site in a
positioned nucleosome is not appreciably impaired in swi
mutant yeast cells. However, chromatin remodeling that depends on a
transcriptional activation domain shows a considerable, although not
complete, SWI-SNF dependence, suggesting that the SWI-SNF complex
exerts its major effect at a step subsequent to activator binding. We
tested this idea further by comparing the SWI-SNF dependence of a
reporter gene based on the GAL10 promoter, which has an
accessible upstream activating sequence and a nucleosomal TATA element,
with that of a CYC1-lacZ reporter, which has a relatively accessible TATA element. We found that the GAL10-based
reporter gene showed a much stronger SWI-SNF dependence than did the
CYC1-lacZ reporter with several different activators.
Remarkably, transcription of the GAL10-based reporter by a
GAL4-GAL11 fusion protein showed a nearly complete requirement for the
SWI-SNF complex, strongly suggesting that SWI-SNF is needed to allow
access of TFIID or the RNA polymerase II holoenzyme. Taken together,
our results demonstrate that chromatin remodeling in vivo can occur by
both SWI-SNF-dependent and -independent avenues and suggest that the SWI-SNF complex exerts its major effect in transcriptional activation at a step subsequent to transcriptional activator-promoter recognition.
*
Corresponding author. Mailing address: Wadsworth
Center, Albany, NY 12201-2002. Phone: (518) 486-3116. Fax: (518)
474-3181. E-mail: Randall.Morse{at}wadsworth.org.
This article has been cited by other articles:
-
Ishii, H., Du, H., Zhang, Z., Henderson, A., Sen, R., Pazin, M. J.
(2009). Mi2{beta} Shows Chromatin Enzyme Specificity by Erasing a DNase I-hypersensitive Site Established by ACF. J. Biol. Chem.
284: 7533-7541
[Abstract]
[Full Text]
-
He, Q., Yu, C., Morse, R. H.
(2008). Dispersed Mutations in Histone H3 That Affect Transcriptional Repression and Chromatin Structure of the CHA1 Promoter in Saccharomyces cerevisiae. Eukaryot Cell
7: 1649-1660
[Abstract]
[Full Text]
-
He, Q., Battistella, L., Morse, R. H.
(2008). Mediator Requirement Downstream of Chromatin Remodeling during Transcriptional Activation of CHA1 in Yeast. J. Biol. Chem.
283: 5276-5286
[Abstract]
[Full Text]
-
Hill, D. A., Peterson, C. L., Imbalzano, A. N.
(2005). Effects of HMGN1 on Chromatin Structure and SWI/SNF-mediated Chromatin Remodeling. J. Biol. Chem.
280: 41777-41783
[Abstract]
[Full Text]
-
Ulyanova, N. P., Schnitzler, G. R.
(2005). Human SWI/SNF Generates Abundant, Structurally Altered Dinucleosomes on Polynucleosomal Templates. Mol. Cell. Biol.
25: 11156-11170
[Abstract]
[Full Text]
-
Dhasarathy, A., Kladde, M. P.
(2005). Promoter Occupancy Is a Major Determinant of Chromatin Remodeling Enzyme Requirements. Mol. Cell. Biol.
25: 2698-2707
[Abstract]
[Full Text]
-
Sabet, N., Volo, S., Yu, C., Madigan, J. P., Morse, R. H.
(2004). Genome-Wide Analysis of the Relationship between Transcriptional Regulation by Rpd3p and the Histone H3 and H4 Amino Termini in Budding Yeast. Mol. Cell. Biol.
24: 8823-8833
[Abstract]
[Full Text]
-
Yarragudi, A., Miyake, T., Li, R., Morse, R. H.
(2004). Comparison of ABF1 and RAP1 in Chromatin Opening and Transactivator Potentiation in the Budding Yeast Saccharomyces cerevisiae. Mol. Cell. Biol.
24: 9152-9164
[Abstract]
[Full Text]
-
Werneck, C. C., Trask, B. C., Broekelmann, T. J., Trask, T. M., Ritty, T. M., Segade, F., Mecham, R. P.
(2004). Identification of a Major Microfibril-associated Glycoprotein-1-binding Domain in Fibrillin-2. J. Biol. Chem.
279: 23045-23051
[Abstract]
[Full Text]
-
Sabet, N., Tong, F., Madigan, J. P., Volo, S., Smith, M. M., Morse, R. H.
(2003). Global and specific transcriptional repression by the histone H3 amino terminus in yeast. Proc. Natl. Acad. Sci. USA
100: 4084-4089
[Abstract]
[Full Text]
-
Miller, J. A., Widom, J.
(2003). Collaborative Competition Mechanism for Gene Activation In Vivo. Mol. Cell. Biol.
23: 1623-1632
[Abstract]
[Full Text]
-
Deckert, J., Struhl, K.
(2002). Targeted Recruitment of Rpd3 Histone Deacetylase Represses Transcription by Inhibiting Recruitment of Swi/Snf, SAGA, and TATA Binding Protein. Mol. Cell. Biol.
22: 6458-6470
[Abstract]
[Full Text]
-
Schrem, H., Klempnauer, J., Borlak, J.
(2002). Liver-Enriched Transcription Factors in Liver Function and Development. Part I: The Hepatocyte Nuclear Factor Network and Liver-Specific Gene Expression. Pharmacol. Rev.
54: 129-158
[Abstract]
[Full Text]
-
Stafford, G. A., Morse, R. H.
(2001). GCN5 Dependence of Chromatin Remodeling and Transcriptional Activation by the GAL4 and VP16 Activation Domains in Budding Yeast. Mol. Cell. Biol.
21: 4568-4578
[Abstract]
[Full Text]
-
Kennedy, B. K., Liu, O. W., Dick, F. A., Dyson, N., Harlow, E., Vidal, M.
(2001). Histone deacetylase-dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft. Proc. Natl. Acad. Sci. USA
10.1073/pnas.151240898v1
[Abstract]
[Full Text]
-
Chua, Y. L., Brown, A. P. C., Gray, J. C.
(2001). Targeted Histone Acetylation and Altered Nuclease Accessibility over Short Regions of the Pea Plastocyanin Gene. Plant Cell
13: 599-612
[Abstract]
[Full Text]
-
Abramova, N. E., Cohen, B. D., Sertil, O., Kapoor, R., Davies, K. J. A., Lowry, C. V.
(2001). Regulatory Mechanisms Controlling Expression of the DAN/TIR Mannoprotein Genes During Anaerobic Remodeling of the Cell Wall in Saccharomyces cerevisiae. Genetics
157: 1169-1177
[Abstract]
[Full Text]
-
Cohen, B. D., Sertil, O., Abramova, N. E., Davies, K. J. A., Lowry, C. V.
(2001). Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites. Nucleic Acids Res
29: 799-808
[Abstract]
[Full Text]
-
DiRenzo, J., Shang, Y., Phelan, M., Sif, S., Myers, M., Kingston, R., Brown, M.
(2000). BRG-1 Is Recruited to Estrogen-Responsive Promoters and Cooperates with Factors Involved in Histone Acetylation. Mol. Cell. Biol.
20: 7541-7549
[Abstract]
[Full Text]
-
Ryan, M. P., Stafford, G. A., Yu, L., Morse, R. H.
(2000). Artificially Recruited TATA-Binding Protein Fails To Remodel Chromatin and Does Not Activate Three Promoters That Require Chromatin Remodeling. Mol. Cell. Biol.
20: 5847-5857
[Abstract]
[Full Text]
-
Ha, N., Hellauer, K., Turcotte, B.
(2000). Fusions with histone H3 result in highly specific alteration of gene expression. Nucleic Acids Res
28: 1026-1035
[Abstract]
[Full Text]
-
Dudley, A. M., Rougeulle, C., Winston, F.
(1999). The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo. Genes Dev.
13: 2940-2945
[Abstract]
[Full Text]
-
Lee, C.-H., Murphy, M. R., Lee, J.-S., Chung, J. H.
(1999). Targeting a SWI/SNF-related chromatin remodeling complex to the beta -globin promoter in erythroid cells. Proc. Natl. Acad. Sci. USA
96: 12311-12315
[Abstract]
[Full Text]
-
Yu, L., Morse, R. H.
(1999). Chromatin Opening and Transactivator Potentiation by RAP1 in Saccharomyces cerevisiae. Mol. Cell. Biol.
19: 5279-5288
[Abstract]
[Full Text]
-
Redner, R. L., Wang, J., Liu, J. M.
(1999). Chromatin Remodeling and Leukemia: New Therapeutic Paradigms. Blood
94: 417-428
[Full Text]
-
Krebs, J. E., Kuo, M.-H., Allis, C. D., Peterson, C. L.
(1999). Cell cycle-regulated histone acetylation required for expression of the yeast HO gene. Genes Dev.
13: 1412-1421
[Abstract]
[Full Text]
-
Balasubramanian, B., Morse, R. H.
(1999). Binding of Gal4p and Bicoid to Nucleosomal Sites in Yeast in the Absence of Replication. Mol. Cell. Biol.
19: 2977-2985
[Abstract]
[Full Text]
-
Stafford, G. A., Morse, R. H.
(1998). Mutations in the AF-2/Hormone-binding Domain of the Chimeric Activator GAL4·Estrogen Receptor·VP16 Inhibit Hormone-dependent Transcriptional Activation and Chromatin Remodeling in Yeast. J. Biol. Chem.
273: 34240-34246
[Abstract]
[Full Text]
-
Pazin, M. J., Hermann, J. W., Kadonaga, J. T.
(1998). Promoter Structure and Transcriptional Activation with Chromatin Templates Assembled In Vitro. A SINGLE Gal4-VP16 DIMER BINDS TO CHROMATIN OR TO DNA WITH COMPARABLE AFFINITY. J. Biol. Chem.
273: 34653-34660
[Abstract]
[Full Text]
-
SCHNITZLER, G.R., SIF, S., KINGSTON, R.E.
(1998). A Model for Chromatin Remodeling by the SWI/SNF Family. Cold Spring Harb Symp Quant Biol
63: 535-544
[Abstract]
-
Kennedy, B. K., Liu, O. W., Dick, F. A., Dyson, N., Harlow, E., Vidal, M.
(2001). Histone deacetylase-dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft. Proc. Natl. Acad. Sci. USA
98: 8720-8725
[Abstract]
[Full Text]