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Mol Cell Biol, August 1998, p. 4659-4669, Vol. 18, No. 8
Department of Molecular Genetics, University
of Illinois College of Medicine, Chicago, Illinois 60612
Received 13 March 1998/Returned for modification 27 April
1998/Accepted 5 May 1998
The most frequently observed mutations in ras oncogenes
in solid human tumors are GC
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Sequence-Directed Base Mispairing in Human
Oncogenes
AT transitions at the 3' G residue of the GG doublet in codon 12 of these oncogenes. We had shown previously that mutagenesis by thymidine occurred with the same sequence specificity in mammalian cells, in that mutagenesis occurred
preferentially at the 3' G of GG doublets. In this study, in vitro DNA
synthesis experiments were carried out to assess the effect of local
DNA sequence on base mispairing in order to determine the mechanism of
sequence-directed mutagenesis by thymidine and its possible relationship to activating point mutations in N-, Ki- and
Ha-ras oncogenes in solid human tumors. To avoid
complicating the interpretation of the results because of the
occurrence of mismatch repair as well as base misincorporation, the
experiments were carried out in a repair-free environment with
exonuclease-free Klenow polymerase. The results of these experiments
showed that misincorporation of deoxyribosylthymine (dT) occurred with
several-fold-greater efficiency opposite the 3' G compared to the 5' G
of the GG doublet in codon 12 of human ras oncogenes. These
results further demonstrated that the relative difference in the extent
of dT misincorporation opposite the 3' G and the 5' G of GG doublets in
codon 12 in the various ras oncogenes was affected by the
base immediately upstream of the doublet. Within the GG doublet, it was
seen that the 5' G and 3' G residues had an effect on the extent of dT
misincorporation opposite each other. The 5' G was shown to have a
stimulatory effect on dT misincorporation opposite the 3' G, while the
3' G was shown to have an inhibitory effect on dT misincorporation opposite the 5' G. Presumably, these mutual interactions within GG
doublets are additive, such that the large differential in dT
misincorporation observed between the 3' G and 5' G residues in GG
doublets is the end result of the combined stimulatory and inhibitory
effects within these doublets. Since the observed pattern of dT
misincorporation within GG doublets corresponds to the most frequent
mode of activation of ras oncogenes in solid human tumors, the results of these experiments suggest that sequence-directed dT
misincorporation may be involved in the pattern of activation of human
ras oncogenes, by causing GC
AT transitions
preferentially at the 3' G of the GG doublet in codon 12 of these
oncogenes.
*
Corresponding author. Mailing address: Department of
Molecular Genetics (M/C 669) University of Illinois College of
Medicine, 900 S. Ashland Ave., Chicago, IL 60612. Phone: (312)
996-0162. Fax: (312) 413-0353. E-mail: rldavids{at}uic.edu.
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