Previous Article | Next Article 
Molecular and Cellular Biology, June 2001, p. 3926-3934, Vol. 21, No. 12
0270-7306/01/$04.00+0 DOI: 10.1128/MCB.21.12.3926-3934.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Site-Specific Genomic Integration in Mammalian
Cells Mediated by Phage
C31 Integrase
Bhaskar
Thyagarajan,
Eric C.
Olivares,
Roger P.
Hollis,
Daniel
S.
Ginsburg, and
Michele P.
Calos*
Department of Genetics, Stanford University
School of Medicine, Stanford, California 94305-5120
Received 12 January 2001/Returned for modification 21 February
2001/Accepted 23 March 2001
We previously established that the phage
C31 integrase, a
site-specific recombinase, mediates efficient integration in the human
cell environment at attB and attP phage
attachment sites on extrachromosomal vectors. We show here that phage
attP sites inserted at various locations in human and
mouse chromosomes serve as efficient targets for precise site-specific
integration. Moreover, we characterize native "pseudo"
attP sites in the human and mouse genomes that also
mediate efficient integrase-mediated integration. These sites have
partial sequence identity to attP. Such sites form
naturally occurring targets for integration. This phage
integrase-mediated reaction represents an effective site-specific
integration system for higher cells and may be of value in gene therapy
and other chromosome engineering strategies.
*
Corresponding author. Mailing address: Department of
Genetics, Stanford University School of Medicine, Stanford, CA
94305-5120. Phone: (650) 723-5558. Fax: (650) 725-1534. E-mail:
calos{at}stanford.edu.
Molecular and Cellular Biology, June 2001, p. 3926-3934, Vol. 21, No. 12
0270-7306/01/$04.00+0 DOI: 10.1128/MCB.21.12.3926-3934.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Nyabi, O., Naessens, M., Haigh, K., Gembarska, A., Goossens, S., Maetens, M., De Clercq, S., Drogat, B., Haenebalcke, L., Bartunkova, S., De Vos, I., De Craene, B., Karimi, M., Berx, G., Nagy, A., Hilson, P., Marine, J.-C., Haigh, J. J.
(2009). Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells. Nucleic Acids Res
37: e55-e55
[Abstract]
[Full Text]
-
Gordley, R. M., Gersbach, C. A., Barbas, C. F. III
(2009). Synthesis of programmable integrases. Proc. Natl. Acad. Sci. USA
106: 5053-5058
[Abstract]
[Full Text]
-
Sangiorgi, E., Shuhua, Z., Capecchi, M. R.
(2008). In vivo evaluation of PhiC31 recombinase activity using a self-excision cassette. Nucleic Acids Res
36: e134-e134
[Abstract]
[Full Text]
-
Maucksch, C., Aneja, M. K., Hennen, E., Bohla, A., Hoffmann, F., Elfinger, M., Rosenecker, J., Rudolph, C.
(2008). Cell type differences in activity of the Streptomyces bacteriophage {phi}C31 integrase. Nucleic Acids Res
36: 5462-5471
[Abstract]
[Full Text]
-
Rowley, P. A., Smith, M. C. A., Younger, E., Smith, M. C. M.
(2008). A motif in the C-terminal domain of {phi}C31 integrase controls the directionality of recombination. Nucleic Acids Res
36: 3879-3891
[Abstract]
[Full Text]
-
Sharma, N., Moldt, B., Dalsgaard, T., Jensen, T. G., Mikkelsen, J. G.
(2008). Regulated gene insertion by steroid-induced {Phi}C31 integrase. Nucleic Acids Res
36: e67-e67
[Abstract]
[Full Text]
-
Xu, Z., Lee, N. C. O., Dafhnis-Calas, F., Malla, S., Smith, M. C. M., Brown, W. R. A.
(2008). Site-specific recombination in Schizosaccharomyces pombe and systematic assembly of a 400kb transgene array in mammalian cells using the integrase of Streptomyces phage {phi}BT1. Nucleic Acids Res
36: e9-e9
[Abstract]
[Full Text]
-
Venken, K. J. T., Bellen, H. J.
(2007). Transgenesis upgrades for Drosophila melanogaster. Development
134: 3571-3584
[Abstract]
[Full Text]
-
Gupta, M., Till, R., Smith, M. C. M.
(2007). Sequences in attB that affect the ability of {phi}C31 integrase to synapse and to activate DNA cleavage. Nucleic Acids Res
35: 3407-3419
[Abstract]
[Full Text]
-
Chen, J.-z., Ji, C.-n., Xu, G.-l., Pang, R.-y., Yao, J.-h., Zhu, H.-z., Xue, J.-l., Jia, W.
(2006). DAXX interacts with phage {Phi}C31 integrase and inhibits recombination. Nucleic Acids Res
34: 6298-6304
[Abstract]
[Full Text]
-
Liu, L., Liu, H., Visner, G., Fletcher, B. S.
(2006). Sleeping Beauty-mediated eNOS gene therapy attenuates monocrotaline-induced pulmonary hypertension in rats. FASEB J.
20: 2594-2596
[Abstract]
[Full Text]
-
Bolusani, S., Ma, C.-H., Paek, A., Konieczka, J. H., Jayaram, M., Voziyanov, Y.
(2006). Evolution of variants of yeast site-specific recombinase Flp that utilize native genomic sequences as recombination target sites. Nucleic Acids Res
34: 5259-5269
[Abstract]
[Full Text]
-
Chalberg, T. W., Vankov, A., Molnar, F. E., Butterwick, A. F., Huie, P., Calos, M. P., Palanker, D. V.
(2006). Gene transfer to rabbit retina with electron avalanche transfection.. IOVS
47: 4083-4090
[Abstract]
[Full Text]
-
Maragathavally, K. J., Kaminski, J. M., Coates, C. J.
(2006). Chimeric Mos1 and piggyBac transposases result in site-directed integration. FASEB J.
20: 1880-1882
[Abstract]
[Full Text]
-
Bertoni, C., Jarrahian, S., Wheeler, T. M., Li, Y., Olivares, E. C., Calos, M. P., Rando, T. A.
(2006). Enhancement of plasmid-mediated gene therapy for muscular dystrophy by directed plasmid integration. Proc. Natl. Acad. Sci. USA
103: 419-424
[Abstract]
[Full Text]
-
Chen, L., Woo, S. L. C.
(2005). Complete and persistent phenotypic correction of phenylketonuria in mice by site-specific genome integration of murine phenylalanine hydroxylase cDNA. Proc. Natl. Acad. Sci. USA
102: 15581-15586
[Abstract]
[Full Text]
-
Malla, S., Dafhnis-Calas, F., Brookfield, J. F. Y., Smith, M. C. M., Brown, W. R. A.
(2005). Rearranging the centromere of the human Y chromosome with {varphi}C31 integrase. Nucleic Acids Res
33: 6101-6113
[Abstract]
[Full Text]
-
Chalberg, T. W., Genise, H. L., Vollrath, D., Calos, M. P.
(2005). {phi}C31 Integrase Confers Genomic Integration and Long-Term Transgene Expression in Rat Retina. IOVS
46: 2140-2146
[Abstract]
[Full Text]
-
Lindenbaum, M., Perkins, E., Csonka, E., Fleming, E., Garcia, L., Greene, A., Gung, L., Hadlaczky, G., Lee, E., Leung, J., MacDonald, N., Maxwell, A., Mills, K., Monteith, D., Perez, C. F., Shellard, J., Stewart, S., Stodola, T., Vandenborre, D., Vanderbyl, S., Ledebur, H. C. Jr
(2004). A mammalian artificial chromosome engineering system (ACE System) applicable to biopharmaceutical protein production, transgenesis and gene-based cell therapy. Nucleic Acids Res
32: e172-e172
[Abstract]
[Full Text]
-
Groth, A. C., Fish, M., Nusse, R., Calos, M. P.
(2004). Construction of Transgenic Drosophila by Using the Site-Specific Integrase From Phage {phi}C31. Genetics
166: 1775-1782
[Abstract]
[Full Text]
-
Khodarev, N. N., Beckett, M., Labay, E., Darga, T., Roizman, B., Weichselbaum, R. R.
(2004). STAT1 is overexpressed in tumors selected for radioresistance and confers protection from radiation in transduced sensitive cells. Proc. Natl. Acad. Sci. USA
101: 1714-1719
[Abstract]
[Full Text]
-
Chilton, M.-D. M., Que, Q.
(2003). Targeted Integration of T-DNA into the Tobacco Genome at Double-Stranded Breaks: New Insights on the Mechanism of T-DNA Integration. Plant Physiol.
133: 956-965
[Abstract]
[Full Text]
-
Corona, T., Bao, Q., Christ, N., Schwartz, T., Li, J., Droge, P.
(2003). Activation of site-specific DNA integration in human cells by a single chain integration host factor. Nucleic Acids Res
31: 5140-5148
[Abstract]
[Full Text]
-
Combes, P., Till, R., Bee, S., Smith, M. C. M.
(2002). The Streptomyces Genome Contains Multiple Pseudo-attB Sites for the {phi}C31-Encoded Site-Specific Recombination System. J. Bacteriol.
184: 5746-5752
[Abstract]
[Full Text]
-
KAMINSKI, J. M., HUBER, M. R., SUMMERS, J. B., WARD, M. B.
(2002). Design of a nonviral vector for site-selective, efficient integration into the human genome. FASEB J.
16: 1242-1247
[Abstract]
[Full Text]
-
Stoll, S. M., Ginsburg, D. S., Calos, M. P.
(2002). Phage TP901-1 Site-Specific Integrase Functions in Human Cells. J. Bacteriol.
184: 3657-3663
[Abstract]
[Full Text]
-
Sclimenti, C. R., Thyagarajan, B., Calos, M. P.
(2001). Directed evolution of a recombinase for improved genomic integration at a native human sequence. Nucleic Acids Res
29: 5044-5051
[Abstract]
[Full Text]