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Molecular and Cellular Biology, June 2008, p. 3663-3671, Vol. 28, No. 11
0270-7306/08/$08.00+0     doi:10.1128/MCB.02185-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Crystal Structure of an Active Form of BACE1, an Enzyme Responsible for Amyloid β Protein Production{triangledown}

Hideaki Shimizu,1 Asako Tosaki,1 Kumi Kaneko,1 Tamao Hisano,2 Takashi Sakurai,1 and Nobuyuki Nukina1*

Laboratory for Structural Neuropathology, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan,1 SPring-8 Center, RIKEN Harima Institute, Koto 1-1-1, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan2

Received 11 December 2007/ Returned for modification 28 January 2008/ Accepted 17 March 2008

BACE1 (β-secretase) is a transmembrane aspartic protease that cleaves the β-amyloid precursor protein and generates the amyloid β peptide (Aβ). BACE1 cycles between the cell surface and the endosomal system many times and becomes activated interconvertibly during its cellular trafficking, leading to the production of Aβ. Here we report the crystal structure of the catalytically active form of BACE1. The active form has novel structural features involving the conformation of the flap and subsites that promote substrate binding. The functionally essential residues and water molecules are well defined and play a key role in the iterative activation of BACE1. We further describe the crystal structure of the dehydrated form of BACE1, showing that BACE1 activity is dependent on the dynamics of a catalytically required Asp-bound water molecule, which directly affects its catalytic properties. These findings provide insight into a novel regulation of BACE1 activity and elucidate how BACE1 modulates its activity during cellular trafficking.


* Corresponding author. Mailing address: Laboratory for Structural Neuropathology, RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan. Phone: 81-48-462-9702. Fax: 81-48-462-4796. E-mail: nukina{at}brain.riken.jp

{triangledown} Published ahead of print on 31 March 2008.


Molecular and Cellular Biology, June 2008, p. 3663-3671, Vol. 28, No. 11
0270-7306/08/$08.00+0     doi:10.1128/MCB.02185-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.




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