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Mol Cell Biol. 1988 May; 8(5): 2237-2241
Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities.
M S Swanson and
G Dreyfuss
Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, Evanston, Illinois 60208.
ABSTRACT
Several proteins of heterogeneous nuclear ribonucleoprotein (hnRNP) particles display very high binding affinities for different ribonucleotide homopolymers. The specificity of some of these proteins at high salt concentrations and in the presence of heparin allows for their rapid one-step purification from HeLa nucleoplasm. We show that the hnRNP C proteins are poly(U)-binding proteins and compare their specificity to that of the previously described cytoplasmic poly(A)-binding protein. These findings provide a useful tool for the classification and purification of hnRNP proteins from various tissues and organisms and indicate that different hnRNP proteins have different RNA-binding specificities.
Mol Cell Biol. 1988 May; 8(5): 2237-2241
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-
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-
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-
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-
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-
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-
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[Abstract]
-
Hamilton, B. J., Burns, C. M., Nichols, R. C., Rigby, W. F. C.
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272: 28732-28741
[Abstract]
[Full Text]
-
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137: 899-908
[Abstract]
[Full Text]
-
Tholanikunnel, B. G., Malbon, C. C.
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272: 11471-11478
[Abstract]
[Full Text]
-
Barlat, I., Maurier, F., Duchesne, M., Guitard, E., Tocque, B., Schweighoffer, F.
(1997). A Role for Sam68 in Cell Cycle Progression Antagonized by a Spliced Variant within the KH Domain. J. Biol. Chem.
272: 3129-3132
[Abstract]
[Full Text]
-
Dietrich-Goetz, W., Kennedy, I. M., Levins, B., Stanley, M. A., Clements, J. B.
(1997). A cellular 65-kDa protein recognizes the negative regulatory element of human papillomavirus late mRNA. Proc. Natl. Acad. Sci. USA
94: 163-168
[Abstract]
[Full Text]
-
Waterhouse, N., Kumar, S., Song, Q., Strike, P., Sparrow, L., Dreyfuss, G., Alnemri, E. S., Litwack, G., Lavin, M., Watters, D.
(1996). Heteronuclear Ribonucleoproteins C1 and C2, Components of the Spliceosome, Are Specific Targets of Interleukin 1beta -converting Enzyme-like Proteases in Apoptosis. J. Biol. Chem.
271: 29335-29341
[Abstract]
[Full Text]
-
Temsamani, J., Pederson, T.
(1996). The C-group Heterogeneous Nuclear Ribonucleoprotein Proteins Bind to the 5' Stem-Loop of the U2 Small Nuclear Ribonucleoprotein Particle. J. Biol. Chem.
271: 24922-24926
[Abstract]
[Full Text]
-
Das, A., Peterson, G. C., Kanner, S. B., Frevert, U., Parsons, M.
(1996). A Major Tyrosine-phosphorylated Protein of Trypanosoma brucei Is a Nucleolar RNA-binding Protein. J. Biol. Chem.
271: 15675-15681
[Abstract]
[Full Text]
-
Proweller, A., Butler, J. S.
(1996). Ribosomal Association of Poly(A)-binding Protein in Poly(A)-deficient Saccharomyces cerevisiae. J. Biol. Chem.
271: 10859-10865
[Abstract]
[Full Text]
-
Honoré, B., Rasmussen, H. H., Vorum, H., Dejgaard, K., Liu, X., Gromov, P., Madsen, P., Gesser, B., Tommerup, N., Celis, J. E.
(1995). Heterogeneous Nuclear Ribonucleoproteins H, H`, and F Are Members of a Ubiquitously Expressed Subfamily of Related but Distinct Proteins Encoded by Genes Mapping to Different Chromosomes. J. Biol. Chem.
270: 28780-28789
[Abstract]
[Full Text]
-
Van Seuningen, I., Ostrowski, J., Bustelo, X. R., Sleath, P. R., Bomsztyk, K.
(1995). The K Protein Domain That Recruits the Interleukin 1-responsive K Protein Kinase Lies Adjacent to a Cluster of c-Src and Vav SH3-binding Sites. J. Biol. Chem.
270: 26976-26985
[Abstract]
[Full Text]
-
Liu, X, Mertz, J E
(1995). HnRNP L binds a cis-acting RNA sequence element that enables intron-dependent gene expression.. Genes Dev.
9: 1766-1780
[Abstract]
-
Forné, T., Rossi, F., Labourier, E., Antoine, E., Cathala, G., Brunel, C., Tazi, J.
(1995). Disruption of Base-paired U4[IMAGE]U6 Small Nuclear RNAs Induced by Mammalian Heterogeneous Nuclear Ribonucleoprotein C Protein. J. Biol. Chem.
270: 16476-16481
[Abstract]
[Full Text]
-
Tholanikunnel, B. G., Granneman, J. G., Malbon, C. C.
(1995). The M[IMAGE] 35,000 [IMAGE]-Adrenergic Receptor mRNA-binding Protein Binds Transcripts of G-protein-linked Receptors Which Undergo Agonist-induced Destabilization. J. Biol. Chem.
270: 12787-12793
[Abstract]
[Full Text]
-
Tomonaga, T., Levens, D.
(1995). Heterogeneous Nuclear Ribonucleoprotein K Is a DNA-binding Transactivator. J. Biol. Chem.
270: 4875-4881
[Abstract]
[Full Text]
-
Wang, L. L., Richard, S.ép., Shaw, A. S.
(1995). p62 Association with RNA Is Regulated by Tyrosine Phosphorylation. J. Biol. Chem.
270: 2010-2013
[Abstract]
[Full Text]
-
Huh, G S, Hynes, R O
(1994). Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element.. Genes Dev.
8: 1561-1574
[Abstract]
-
Patton, J G, Mayer, S A, Tempst, P, Nadal-Ginard, B
(1991). Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing.. Genes Dev.
5: 1237-1251
[Abstract]
-
Shannon, K W, Guthrie, C
(1991). Suppressors of a U4 snRNA mutation define a novel U6 snRNP protein with RNA-binding motifs.. Genes Dev.
5: 773-785
[Abstract]
-
Malter, J.
(1989). Identification of an AUUUA-specific messenger RNA binding protein. Science
246: 664-666
[Abstract]
-
Bandziulis, R J, Swanson, M S, Dreyfuss, G
(1989). RNA-binding proteins as developmental regulators.. Genes Dev.
3: 431-437
-
Sharp, P. A.
(1988). RNA Splicing and Genes. JAMA
260: 3035-3041
[Abstract]
-
Wan, L., Kim, J.-K., Pollard, V. W., Dreyfuss, G.
(2001). Mutational Definition of RNA-binding and Protein-Protein Interaction Domains of Heterogeneous Nuclear RNP C1. J. Biol. Chem.
276: 7681-7688
[Abstract]
[Full Text]
-
Dimaano, C., Ball, J. R., Prunuske, A. J., Ullman, K. S.
(2001). RNA Association Defines a Functionally Conserved Domain in the Nuclear Pore Protein Nup153. J. Biol. Chem.
276: 45349-45357
[Abstract]
[Full Text]
-
Feng, Y., Huang, H., Liao, J., Cohen, S. N.
(2001). Escherichia coli Poly(A)-binding Proteins That Interact with Components of Degradosomes or Impede RNA Decay Mediated by Polynucleotide Phosphorylase and RNase E. J. Biol. Chem.
276: 31651-31656
[Abstract]
[Full Text]
-
Jacquenet, S., Mereau, A., Bilodeau, P. S., Damier, L., Stoltzfus, C. M., Branlant, C.
(2001). A Second Exon Splicing Silencer within Human Immunodeficiency Virus Type 1 tat Exon 2 Represses Splicing of Tat mRNA and Binds Protein hnRNP H. J. Biol. Chem.
276: 40464-40475
[Abstract]
[Full Text]
-
Ostrowski, J., Kawata, Y., Schullery, D. S., Denisenko, O. N., Higaki, Y., Abrass, C. K., Bomsztyk, K.
(2001). Insulin alters heterogeneous nuclear ribonucleoprotein K protein binding to DNA and RNA. Proc. Natl. Acad. Sci. USA
98: 9044-9049
[Abstract]
[Full Text]