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Mol Cell Biol, January 1998, p. 19-29, Vol. 18, No. 1
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Novel I
B
Proteolytic Pathway in WEHI231
Immature B Cells
Shigeki
Miyamoto,*
Bradley J.
Seufzer, and
Stuart D.
Shumway
Program in Cell and Molecular Biology,
Department of Human Oncology, University of Wisconsin
Madison,
Madison, Wisconsin 53792
Received 22 August 1997/Accepted 8 October 1997
 |
ABSTRACT |
The Rel/NF-
B family of transcription factors is sequestered in
the cytoplasm of most mammalian cells by inhibitor proteins belonging
to the I
B family. Degradation of I
B by a
phosphorylation-dependent ubiquitin-proteasome (inducible) pathway is
believed to allow nuclear transport of active Rel/NF-
B dimers.
Rel/NF-
B (a p50-c-Rel dimer) is constitutively nuclear in murine B
cells, such as WEHI231 cells. In these cells, p50, c-Rel, and I
B
are synthesized at high levels but only I
B
is rapidly degraded.
We have examined the mechanism of I
B
degradation and its relation
to constitutive p50-c-Rel activation. We demonstrate that all I
B
is found complexed with c-Rel protein in the cytoplasm. Additionally,
rapid I
B
proteolysis is independent of but coexistent with the
inducible pathway and can be inhibited by calcium chelators and some
calpain inhibitors. Conditions that prevent degradation of I
B
also inhibit nuclear p50-c-Rel activity. Furthermore, the half-life of
nuclear c-Rel is much shorter than that of the cytoplasmic form,
underscoring the necessity for its continuous nuclear transport to
maintain constitutive p50-c-Rel activity. We observed that I
B
,
another NF-
B inhibitor, is also complexed with c-Rel but slowly
degraded by a proteasome-dependent process in WEHI231 cells. In
addition, I
B
is basally phosphorylated and cytoplasmic. We thus
suggest that calcium-dependent I
B
proteolysis maintains nuclear
transport of a p50-c-Rel heterodimer which in turn activates the
synthesis of I
B
, p50, and c-Rel to sustain this dynamic process
in WEHI231 B cells.
 |
INTRODUCTION |
Proteolysis is one mechanism by
which cells irreversibly control protein functions. The functions of
many regulatory proteins, such as oncoproteins, tumor suppressors, cell
cycle control proteins, and transcription factors, are controlled by
modulated proteolysis (14, 41). In the case of Rel/NF-
B,
a family of transcription factors important for regulation of many
cellular functions (5, 58), the proteolytic control is
imposed not on the factors themselves but on the associated inhibitor
protein, I
B. Thus, an important area of Rel/NF-
B studies focuses
on the molecular mechanisms of I
B degradation pathways.
I
B comprises a family of related proteins that includes I
B
,
I
B
, I
B
/p105, I
B
/p100, and I
B
(4).
I
B members form trimeric complexes with dimers of Rel/NF-
B family
members, p50 (NFKB1), p52 (NFKB2), RelA (p65), c-Rel, and RelB (4,
5, 58). Different I
B members preferentially associate with
specific Rel/NF-
B dimers and sequester them in the cytoplasm
(37). Upon stimulation with extracellular signals, such as
cytokines, growth factors, chemical stresses, UV or ionizing radiation,
bacterial lipopolysaccharide (LPS), or tetradecanoyl phorbol acetate,
many I
B members undergo phosphorylation-dependent degradation to
release active Rel/NF-
B dimers (5, 58). Signal-inducible
degradation of I
B
, I
B
, and I
B
requires site-specific
phosphorylation of serines 32 and 36, 19 and 23, and 157 and 161, respectively (9, 10, 16, 32, 60). These serines are
conserved among family members; therefore, the same or similar kinases
may be responsible for phosphorylation (4). Phosphorylation
serves as a signal for subsequent attachment of multiple 76-amino-acid ubiquitin polypeptides (1, 12, 43). Ubiquitination targets I
B
to degradation by the 26S proteasome (12).
Consequently, signal-inducible I
B degradation and Rel/NF-
B
activation pathways can be efficiently blocked by various
cell-permeable proteasome inhibitors (5, 58). Extracellular
signal and cell type dictate which of coexisting Rel/NF-
B/I
B
complexes become targeted for I
B degradation and transient or
long-term NF-
B activation (54, 58, 60). The activated
Rel/NF-
B dimers migrate into the nucleus, bind to decameric
B DNA
binding sites, and regulate transcription of a wide variety of genes.
These include Rel/NF-
B/I
B members (37) and those
involved in immune, inflammatory, and acute-phase responses
(28). Rel/NF-
B proteins may also regulate oxidative stress responses (46), proliferation (17, 27, 49,
50), and apoptosis (7, 56, 59). Thus, I
B
degradation is one essential event in signaling pathways leading to
Rel/NF-
B activation and subsequent target gene activation. To date,
degradation by the 26S proteasome is the only known process for I
B
degradation in cells (4, 5, 58).
In mouse splenic B cells and B-cell lines, Rel/NF-
B activity is
constitutively nuclear and is believed to regulate immunoglobulin kappa
light chain (Ig
) gene transcription (45, 48). The major constitutive dimers in these cells are a p50 homodimer and a p50-c-Rel heterodimer (31, 36). c-Rel contains a C-terminal
transactivation domain which p50 lacks (6, 26); therefore,
p50-c-Rel is considered to be the major transcriptional activator. In
these B cells, the expression of p50/p105, c-Rel, and I
B
is
augmented, compared to pre-B cells (36), presumably by
autoregulation through the
B sites in their genes (13, 22,
53). Other I
B members are also expressed in B cells, but the
level of I
B
is lower than that in pre-B cells (25,
30). I
B
preferentially blocks the DNA binding of
homodimeric p50 protein (30). Coincidentally, the DNA
binding of p50 homodimer is increased in B cells. Among the I
B
members, I
B
is selectively and rapidly degraded in B cells
despite its high synthetic rate (34). I
B
can
efficiently inhibit the DNA binding of p50-c-Rel present in B cells
(34). In the present study, we examined this rapid I
B
proteolysis and its relationship to constitutive p50-c-Rel activity in
WEHI231 murine B cells. Specifically, we examined the role of I
B
S32/36 phosphorylation and ubiquitin-proteasome degradation. In
addition, we analyzed degradation, basal phosphorylation, and nuclear
localization of I
B
in relation to constitutive p50-c-Rel
activation. Our results suggest that a novel calcium-dependent but
proteasome-independent I
B
proteolysis maintains constitutive
p50-c-Rel activity in WEHI231 murine B cells.
 |
MATERIALS AND METHODS |
Cell culture.
WEHI231 cells were maintained in RPMI 1640 medium (Cellgro; Mediatech) supplemented with 10% fetal bovine serum
(HyClone Laboratory, Inc.), 5 × 10
5 M
-mercaptoethanol, 1,250 U of penicillin G (Sigma), and 0.5 mg of
streptomycin sulfate (Sigma) per ml in a 5% CO2 humidified incubator (Forma). 70Z/3-CD14 cells were maintained as described above
in the presence of 1 mg of G418 (Gibco-BRL) per ml in the medium. The
cells were passaged twice weekly before reaching a cell density of
2 × 106 ml.
Chemicals.
Calpain inhibitor I (ALLnL), calpain inhibitor II
(ALLM), tosylphenylalanine chloromethyl ketone (TPCK), pyrrolidine
dithiocarbamate (PDTC), NH4Cl, dimethyl sulfoxide (DMSO),
bacterial LPS, and cycloheximide were purchased from Sigma. Calpeptin
(ZLnL) was from Calbiochem, and BAPTA-AM was from NovaBiochem. E64-d
and ZLLF were generous gifts from K. Hanada (Taisho Pharmaceutical,
Japan) and F. Mercurio (Signal Pharmaceutical), respectively.
Lactacystin was generously provided by E. J. Corey (Harvard
University). The stock solutions were prepared in DMSO at 50 mg/ml or
100 mM (ALLnL, ALLM, calpeptin, and E64-d), 50 mM (tosylleucine
chloromethyl ketone [TLCK] and TPCK), 100 mM (PDTC), 4 mg/ml (ZLLF),
30 mM (BAPTA-AM), and 25 mM (lactacystin and 25% DMSO).
NH4Cl and cycloheximide were prepared in H2O at
1 M and 10 mg/ml, respectively. LPS was prepared in the growth medium
at 1 mg/ml. In every experiment presented, the amount of DMSO was
corrected in each sample such that the effect of DMSO was controlled.
All stocks were stored in aliquots either at
70 or
20°C.
Cell preparation and Western blotting.
All incubations were
performed in 1 ml of growth medium in 1.5-ml Eppendorf tubes secured on
Labquaker (Barnstead/Thermolyne) which was placed in a 37°C
incubator. The samples were continuously mixed by slow rotation for the
period described for each experiment. Cells were then pelleted at
13,000 × g for 10 s in an Eppendorf centrifuge,
rinsed twice with phosphate-buffered saline (PBS), resuspended in
small amounts of PBS, and lysed by addition of 2× Laemmli
buffer. The cell samples were immediately boiled for 10 min to
inactivate proteases and phosphatases, electrophoresed in sodium
dodecyl sulfate (SDS)-10 or 12.5% polyacrylamide gels, electroblotted
(Bio-Rad) onto an Immobilon-P nylon membrane (GIBCO), and then
incubated with appropriate IgG fractions in PBS containing 5% nonfat
dry milk (Carnation), 0.2% Tween 20 (Sigma), and 0.02% sodium azide
(Sigma). IgGs against I
B
(C21), I
B
(C20), c-Rel (C), RelA
(A), and Sp-1 (1C6) were from Santa Cruz Biotechnology. The antibody
against lamin B was from MatriTect. Following an overnight incubation,
the blots were washed twice with a wash buffer (PBS-0.2% Tween 20)
for 30 min each time at room temperature and then further incubated for
2 h with a secondary horseradish peroxidase (HRP)-conjugated
donkey anti-rabbit antibody (Amersham), HRP-conjugated protein A
(Amersham), or HRP-conjugated donkey anti-mouse antibody (Oncogene
Science). The blots were washed twice as above and developed by using
the enhanced chemiluminescence (ECL) procedure as specified by the
manufacturer (Amersham).
Samples used for coimmunoprecipitation experiments were resuspended in
hypotonic buffer A (2) supplemented with various protease
and phosphatase inhibitors as described previously (35), the
nuclei were removed by centrifugation at 13,000 × g
for 10 s, and 4 volumes of co-IP (coimmunoprecipitation) buffer
(10 mM Tris-Cl [pH 7.5], 150 mM NaCl, 1 mM EDTA, 0.4% Nonidet P-40)
was added to the supernatants. The protein A-Sepharose and appropriate antibodies for each protein were then added. For nuclear and
cytoplasmic partitioning experiments, cells were lysed in hypotonic
buffer A in the presence of above-specified protease and phosphatase inhibitors followed by fivefold dilution with the nuclear preparation buffer as described previously (11), and the fractions were separated by centrifugation through a 50% sucrose cushion in the nuclear preparation buffer. The upper supernatant fractions and the
pellets formed at the bottom of the sucrose layer represented the
cytoplasmic and nuclear fractions, respectively.
In vivo labeling.
Appropriate number of cells were rinsed
with Met
Cys
RPMI 1640 medium (CellGro),
resuspended at 107 cells/ml, and pulse-labeled with
[35S]Met-Cys mixture (Amersham) as described previously
(34). Cells were then rinsed twice with growth medium
without the label and chased for indicated periods. Cells were then
pelleted, rinsed twice with PBS, and frozen at
70°C until all
samples were terminated. Samples used for immunoprecipitation
experiments were resuspended in IP buffer (20 mM Tris-Cl [pH 8.0],
250 mM NaCl, 5 mM EDTA, 0.5% Nonidet P-40, 0.5% deoxycholic acid,
0.1% SDS, protease and phosphatase inhibitors) supplemented with 0.5%
SDS, boiled for 10 min, diluted fivefold with IP buffer, and
immunoprecipitated as described above. Following washes, the
immunoprecipitates were boiled in the presence of 1 mg of bovine serum
albumin and 0.5% SDS in IP buffer, diluted fivefold, and
reprecipitated for the second time to reduce backgrounds. The
immunoprecipitates were rinsed four times with IP buffer, resuspended
in 2× Laemmli buffer, boiled for 10 min, and electrophoresed in
SDS-10 or 12.5% polyacrylamide gels. The gels were processed as
described previously (34). Nuclear and cytoplasmic fractions
were prepared as described above, using the 50% sucrose cushion from
cell pellets prepared at each time point of the pulse-chase
experiments. The gels were exposed to either X-ray film for generation
of figures or a PhosphorImager for quantification using the ImageQuant
program.
Retrovirus construction and infection.
The murine I
B
cDNA was cloned into the pLHL-CA retroviral vector as described
previously (57). An oligonucleotide
(5'-TATACGCGTTATGGCTAGCTACCCATACGACGTCCCAGATTACGCGGACTTAGGATCCGTTAACAAGCTTAGATCTTC-3') containing the hemagglutinin (HA) tag (underlined)
(19) and three amino acids at both N and C termini was
cloned into the MluI and BglII sites within the
multiple cloning sites of the retroviral vector. The resulting vector
is pLHL-CAHA. The murine I
B
cDNA clone was amplified by PCR, and
the product was digested with BamHI and
HindIII and cloned into the BamHI and
HindIII sites downstream of the HA tag. This cloning
procedure generated murine I
B
with an N-terminal HA tag in frame
with a total of a 15-amino-acid extension. The S32/36A mutant was
generated by site-directed mutagenesis using an oligonucleotide
(5'-GTGGACGATCGCCACGACGCAGGTCTAGACGCCATGAAGGACGAGGAGTAC-3') which introduced a unique XbaI site along with change
of serines 32 and 36 to alanines. The mutant clones were identified by
the presence of a unique XbaI site and confirmed by
sequencing. The mutant cDNA was then digested with ApaI and
HindIII and cloned into ApaI and
HindIII sites of the pLHL-CAHA-mI
B
, replacing the
N-terminal wild-type (WT) sequence.
Retrovirus was generated by transient cotransfection of 293 human
embryonic kidney cells (grown in Dulbecco's modified Eagle's
medium
with 10% bovine serum in 0.1% gelatin-coated culture dishes
in 10%
CO
2 incubators) with a retroviral construct and a helper
virus, pCLeco (
38), followed by coincubation of either
70Z/3-CD14
or WEHI231 cells for 24 h with Polybrene (4 µg/ml) in
RPMI 1640
with the above-specified supplements. The infected cells were
separated from adherent 293 cells and then selected with hygromycin
(1 mg/ml; Boehringer Mannheim). For cloning, cells were diluted
immediately following infection, and individual cells were picked
under
a microscope and grown from a single cell into a mass culture
in the
presence of hygromycin. The WEHI231 and 70Z/3-CD14 cells
stably
expressing WT and S32/36A mutant I

B

were maintained in
the growth
medium supplemented with 1 mg of hygromycin per ml.
EMSA.
Cell pellets were prepared as described above except
that the concentration of cells used for initial incubations was 5 × 106 to 107 /ml. The cell pellets were stored
frozen at
70°C until nuclear extract preparation. Nuclear extracts
were prepared as described previously (2), and the
conditions for the electrophoretic mobility shift assay (EMSA) were as
published previously (36). The nature of the inducible and
constitutive NF-
B complexes in 70Z/3 and WEHI231 cells,
respectively, has been previously published (36). The
oligonucleotide used was a double-stranded 27-mer containing the Ig
intronic
B site
(5'-CTCAACAGAGGGGACTTTCCGAGAGGCCAT-3'). Following electrophoresis in a 4% native acrylamide gel, the
gels were dried, exposed to X-ray films, and developed as described above.
 |
RESULTS |
Total I
B
is rapidly degraded in WEHI231 murine B cells.
The p50-c-Rel dimer is constitutively nuclear in WEHI231 murine B
cells (36). We previously demonstrated that newly
synthesized I
B
is rapidly degraded in these cells
(34). In contrast, rapid proteolysis of newly synthesized
I
B
is not seen in 70Z/3 murine pre-B cells. Coincidentally, these
pre-B cells lack constitutive NF-
B activity. To further address the
question of rapid I
B
degradation in B cells, we examined the
degradation of the total I
B
population. We used anti-I
B
to
probe immunoblots of total cellular proteins from WEHI231 cells treated
for various lengths of time with the protein synthesis inhibitor
cycloheximide (Fig. 1A). A 70Z/3 cell
line expressing human CD14, 70Z/3-CD14 (23), was similarly
examined. The results shown in Fig. 1A demonstrate that total I
B
turns over more rapidly in WEHI231 (lanes 8 to 14) than 70Z/3-CD14
(lanes 1 to 7) cells. Equivalent loading between samples is shown by
the presence of nonspecific protein (Fig. 1B). Although degradation is
augmented, the net steady-state level of I
B
protein is ~2-fold
higher in WEHI231 cells (Fig. 1C; compare lanes 1 and 5) due to an even
greater augmentation of synthesis (34). To determine whether
this rapid proteolysis is due to the presence of excess free I
B
protein, which has a half-life of about 30 min in Cos cells
(51), we performed coimmunoprecipitation using antisera
against NF-
B subunit proteins. We reasoned that if free I
B
was
produced in a large quantity to account for the overall half-life of
about 40 min, then we should be able to detect some I
B
protein
which was not bound to NF-
B subunit proteins at steady state. As
shown in Fig. 1D, all detectable I
B
coimmunoprecipitated with
c-Rel (lanes 1 and 3) and no free I
B
was seen (lane 5). These
results demonstrate that most, if not all, I
B
is bound to c-Rel
and suggest that excess free I
B
is unlikely to account for faster
I
B
turnover in B cells (WEHI231) than in pre-B cells (70Z/3-CD14).

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FIG. 1.
I B is associated with c-Rel and undergoes rapid
proteolysis in WEHI231 cells. (A) Total I B degrades faster in
WEHI231 cells than in 70Z/3-CD14 cells. The same number of 70Z/3-CD14
and WEHI231 cells (1.4 × 106) were incubated with
cycloheximide (20 µg/ml) and terminated at the time points shown.
Total cell pellets were dissolved in 2× Laemmli sample buffer and
immediately boiled to preserve potentially modified I B forms. The
samples were electrophoresed in SDS-12.5% polyacrylamide gels,
transferred to a nylon membrane, and probed with IgG against I B
protein. The protein bands (arrow) were visualized by ECL reaction. (B)
Loading control for blot in panel A. The blot in panel A was reprobed
with IgG against RelA and developed as described above; a nonspecific
band (arrow) is shown. (C) Relative steady-state levels of I B in
WEHI231 and 70Z/3-CD14 cells. Serial dilutions of 70Z/3-CD14 and
WEHI231 cells (shown above each lane in cell number) were loaded.
Positions of I B are shown on the left (arrow). (D) I B is
complexed exclusively with c-Rel in WEHI231 cells. WEHI231 cells
(106) were lysed in a hypotonic buffer in the presence of
various protease inhibitors and phosphatase inhibitors as described in
Materials and Methods, and the cytoplasmic fraction was split into two
equal fractions. One fraction was immunoprecipitated with antibody
against I B (lane 1), and the unprecipitated supernatant was
reimmunoprecipitated to examine the efficiency of the first
precipitation (lane 2). The other half of the original fraction was
first immunoprecipitated with anti-c-Rel (lane 3). The unprecipitated
proteins were then immunoprecipitated with anti-RelA (lane 4), and the
same procedure was repeated for final I B precipitation (lane 5).
The immunoprecipitates were electrophoresed in SDS-10% polyacrylamide
gels, blotted, and probed with anti-I B antibody. The I B
band (filled arrow) was visualized by ECL reaction using HRP-conjugated
protein A to reduce reactivity with the rabbit Igµ heavy chains used
for immunoprecipitation (open arrow).
|
|
Rapid I
B
degradation is insensitive to proteasome
inhibitors.
Since 26S proteasome is the only known in vivo
I
B
protease (4, 5, 58), the requirement of proteasome
activity for rapid I
B
proteolysis in WEHI231 cells was next
examined. We treated WEHI231 cells with cycloheximide and the
proteasome inhibitor ALLnL (58). ALLnL poorly inhibited
I
B
degradation in these cells (Fig.
2A). As a positive control, we showed
that ALLnL blocks I
B
degradation induced by LPS in pre-B cells
(Fig. 2B). We then examined the effects of a highly specific proteasome
inhibitor, lactacystin (18). High doses of lactacystin (up
to 75 µM) show no detectable inhibitory activity in WEHI231 cells
(Fig. 2C) but block the signal-inducible I
B
degradation in pre-B
cells (Fig. 2D). Pulse-chase experiments also demonstrated that
lactacystin (even at 100 µM) is ineffective at blocking I
B
degradation in these B cells (Fig. 2E and quantification by
PhosphorImager not shown). These results provide evidence for
proteasome-independent I
B
proteolysis in WEHI231 cells.

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FIG. 2.
Proteasome inhibitors fail to block rapid I B
proteolysis in WEHI231 cells. (A) ALLnL only slightly blocks basal
I B turnover. WEHI231 cells were preincubated with various
concentrations of ALLnL as shown for 30 min and then treated with
cycloheximide (Cx) for an additional 2 h. Cell samples were
processed, and I B (arrow) was visualized. OT, samples terminated
prior to addition of inhibitors. (B) ALLnL efficiently blocks
LPS-induced I B degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells
were pretreated with various doses of ALLnL for 30 min and then treated
with LPS (1 µg/ml; lanes 2 to 5) for 15 min. Cells were processed,
and I B was visualized. A slight mobility shift of I B
associated with hyperphosphorylation in lanes 3 to 5 is shown by
I B -P. (C) Lactacystin fails to block rapid I B degradation
in WEHI231 cells. WEHI231 cells were pretreated with various doses of
lactacystin for 30 min then treated with cycloheximide for 1.5 h
followed by Western blot analysis of I B . (D) Lactacystin is
capable of inhibiting LPS-inducible I B degradation in 70Z/3-CD14
cells. 70Z/3-CD14 cells were preincubated with various doses of
lactacystin for 30 min and then stimulated with LPS (1 µg/ml) for 15 min, and the level of I B was determined. Lane 8 is loaded with
half as many untreated WEHI231 cells as a migration control.
Hyperphosphorylated I B (I B -P) is in lanes 4 to 7. (E)
Pulse-chase of I B in untreated and lactacystin-treated WEHI231
cells. WEHI231 cells (8 × 106) were pulse-labeled
with [35S]Met-Cys for 3.5 h, rinsed with excess
growth medium, and incubated with either 0.1% DMSO or 100 µM
lactacystin (final DMSO concentration, 0.1%) for various periods. OT
was taken immediately after addition of DMSO or lactacystin. Cell
samples were processed as described in Materials and Methods, and the
resulting dry gel was exposed to X-ray films to visualize I B .
Scanning with a PhosophorImager and quantification by ImageQuant show a
slight overloading in lanes 5 and 6, but there was no difference of
degradation between these two treatment groups. In addition, a
proteolytic intermediate (asterisk) was observed in both the control
and treated cells. A similar proteolytic intermediate was not seen
during LPS-induced I B degradation (not shown).
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|
S32/36 phosphorylation is not an absolute requirement for rapid
I
B
proteolysis.
Prior phosphorylation at S32/36 is an
essential requirement for most signal-inducible I
B
degradation
pathways (9, 10). This phosphorylation induces a
characteristic mobility shift of the I
B
protein during
polyacrylamide gel electrophoresis (Fig. 2B and D, I
B
-P).
However, this mobility shift of I
B
was not observed in WEHI231
cells treated with proteasome inhibitors (Fig. 2A and C). To determine
if S32/36 phosphorylation is an essential requirement for rapid
I
B
proteolysis in WEHI231 cells, we examined the degradation of
an HA epitope-tagged S32/36A I
B
mutant. This mutant contains
alanines at positions 32 and 36. As a positive control, WT I
B
was
also expressed in these cells. Both the WT and endogenous I
B
proteins are rapidly degraded in control cells (Fig.
3A, lanes 1 to 5). Therefore, the
N-terminal HA epitope does not interfere with degradation. The S32/36A
mutant and the endogenous I
B
protein are also rapidly degraded in
a pool of cells stably expressing this mutant protein (Fig. 3A, lanes 6 to 10). Rapid proteolysis of the S32/36A mutant also occurs in nine
independent stable clones that express various levels of the S32/36A
mutant (Fig. 3B). These results are in sharp contrast to the absolute
requirement of the S32/36 phosphorylation sites for LPS-inducible
I
B
phosphorylation (Fig. 3C, lanes 3 and 6) and degradation
(lanes 2 and 5) in pre-B cells. A mutant of I
B
with
lysine-to-arginine changes at ubiquitination sites, positions 21 and 22 (K21/22R), also degrades efficiently in WEHI231 cells (not shown).
Thus, these results demonstrate that rapid I
B
proteolysis can
occur in the absence of S32/36 phosphorylation and K21/22 ubiquitination in WEHI231 cells.

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FIG. 3.
S32/36 phosphorylation of I B is not required for
rapid I B proteolysis in WEHI231 cells. (A) Both WT and S32/36A
mutant I B degrade in WEHI231 cells. Pooled WT (lanes 1 to 5)- or
S32/36A (lanes 6 to 10)-expressing WEHI231 cells were treated with
cycloheximide and terminated at different time points. Exogenous
I B proteins are shown by an open arrow, while the endogenous
protein is shown by a filled arrow. An asterisk shows a possible
proteolytic intermediate. (B) Degradation of the S32/36A mutant in
stable clones. Nine independent clones of WEHI231 cells expressing the
S32/36A mutant I B protein were analyzed for the ability to
degrade the mutant I B protein as described above. The open arrow
points to the S32/36A mutant, while the filled arrow points to the
endogenous I B protein. An asterisk shows a possible proteolytic
intermediate. (C) The endogenous and exogenous WT but not the exogenous
S32/36A mutant I B undergo LPS-induced hyperphosphorylation and
degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells expressing either WT
(lanes 1 to 3) or S32/36A (lanes 4 to 6) were treated with LPS (lanes
2, 3, 5, and 6) without (lanes 2 and 5) or with ALLnL (lanes 3 and 6)
(50 µg/ml). Cells were processed and blotted with anti-I B
antibody as for Fig. 1A. The positions of exogenous (exo), endogenous
(endo), phosphorylated exogenous (exo-p) and phosphorylated endogenous
(endo-p) I B proteins are shown.
|
|
Constitutive p50-c-Rel activity is insensitive to proteasome
inhibitors.
Even though rapid I
B
proteolysis cannot be
blocked by proteasome inhibitors in WEHI231 cells, constitutive
p50-c-Rel activity may require a proteasome-dependent process. For
example, proteasome-dependent degradation of other I
B members, such
as I
B
or I
B
, may be required (32, 39, 60). To
directly examine this possibility, WEHI231 cells were treated with
doses of ALLnL and lactacystin for times up to 3.5 h. Although
these inhibitors have been shown to efficiently block signal-induced
NF-
B activation (58), EMSAs demonstrate that neither
proteasome inhibitor is able to inhibit constitutive p50-c-Rel
activity (Fig. 4A). The control
experiments shown in Fig. 4B demonstrate that both proteasome
inhibitors efficiently block LPS-inducible NF-
B activation in
a dose-dependent manner. Thus, like rapid I
B
proteolysis,
constitutive p50-c-Rel activation is a proteasome-independent process
in WEHI231 B cells.

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FIG. 4.
Proteasome inhibitors fail to block constitutive
p50-c-Rel activity in WEHI231 cells. (A) ALLnL and lactacystin fail to
block constitutive p50-c-Rel activity in WEHI231 cells. WEHI231 cells
were treated with various doses of ALLnL (lanes 3 to 5) and lactacystin
(lanes 6 to 8) or with DMSO (0.2%) alone (lane 2) for 3 h.
Nuclear extracts were analyzed by EMSA using the Ig B site (see
Materials and Methods). Lane 1 contains untreated WEHI231 cells. The
positions of p50-c-Rel, p50 homodimer, and free probe are shown on the
left. (B) ALLnL and lactacystin efficiently block LPS-inducible NF- B
activation in 70Z/3-CD14 cells. 70Z/3-CD14 cells were pretreated with
inhibitors and concentrations as indicated for 30 min, followed by
stimulation with LPS (1 µg/ml) for 15 min. Lane 1 contains untreated
cells. The nuclear extracts were analyzed as described above. The
positions of the inducible p50-p65 (RelA) complex and the free probe
are shown on left.
|
|
I
B
is a target of at least two proteolytic processes in
WEHI231 cells.
The foregoing data demonstrate that rapid
I
B
proteolysis and constitutive p50-c-Rel activity in
WEHI231 cells are mechanistically distinct from known
signal-inducible pathways. This may be due to the lack of the
signal-inducible pathway or insufficient uptake of proteasome
inhibitors. To directly address these possibilities, WEHI231 cells were
stimulated with LPS in the presence and absence of proteasome
inhibitors. Stimulation of WEHI231 cells with LPS induces modest
I
B
degradation in 30 min (Fig. 5A;
compare lanes 1, 4, and 6 to lanes 2, 5, and 7). Even though the rate
of degradation induced by LPS is lower in this cell type than in pre-B
cells (Fig. 2B and D), ALLnL can efficiently block this degradation. Additionally, ALLnL induces accumulation of the slower-migrating S32/36
phosphorylated I
B
protein (lane 3). Longer exposure shows the
accumulation of a high-molecular-weight I
B
ladder, consistent with formation of multiubiquitinated I
B
proteins (Fig. 5B, lane 3). More pronounced effects of LPS-inducible degradation and proteasome inhibitors can be seen when WEHI231 cells are treated with
cycloheximide to eliminate high-level I
B
synthesis (not shown).
Finally, the S32/36A mutant is resistant to degradation by LPS
stimulation (Fig. 5B, lanes 6 and 7) and remains associated with c-Rel
(Fig. 5C, lanes 3 and 6). These results demonstrate that the
LPS-inducible I
B
degradation processes in B (WEHI231) and pre-B
(70Z/3-CD14) cells are indistinguishable and dependent on the S32/36
phosphorylation-dependent ubiquitin-proteasome pathway. Furthermore,
the uptake of proteasome inhibitors is sufficient to block
LPS-stimulated I
B
degradation in these cells. Thus, the results
demonstrate that I
B
is targeted to at least two proteolytic
systems, signal-inducible proteasome-dependent and constitutive
proteasome-independent systems, in WEHI231 B cells.

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FIG. 5.
Inducible I B degradation requires the S32/36
phosphorylation-dependent ubiquitin-proteasome pathway in WEHI231
cells. (A) I B degradation induced by LPS in control, WT, or
S32/36 WEHI231 cells. WEHI231 cells were treated with LPS (10 µg/ml)
for 30 min with (lane 3) and without (other lanes) 30-min pretreatment
with ALLnL (50 µg/ml). Similar numbers of cells stably expressing
either WT or S32/36A mutant I B were also stimulated with LPS as
described above. Hyperphosphorylated I B (I B -P) is shown in
lane 3. (B) Longer exposure of the blot in panel A. A
high-molecular-weight ladder and a smaller antiserum-reactive band are
seen in lane 3. WT I B is degraded (compare lanes 4 and 5, band
labeled Exo.), while S32/36A is not (lanes 6 and 7). (C) Both exogenous
and endogenous I B are complexed with c-Rel in WEHI231 cells.
WEHI231 cells expressing WT (lanes 1 to 3) or S32/36A (lanes 4 to 6)
were processed for coimmunoprecipitation as described in legend to Fig.
1D. The positions of exogenous (open arrow) and endogenous (filled
arrow) proteins are shown on the left.
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|
Calpain inhibitors and calcium chelators selectively block rapid
I
B
proteolysis in WEHI231 cells.
To further distinguish
between constitutive and inducible I
B
degradation processes in
WEHI231 cells, effects of various protease inhibitors were next
examined. Our previous study (Fig. 2A) demonstrated that ALLnL,
but not lactacystin, slightly inhibits I
B
turnover in
unstimulated WEHI231 B cells. Since ALLnL can inhibit the activity of
calpain, a calcium-dependent cysteine protease, other calpain
inhibitors were also examined. The results shown in Fig.
6A (1.5-h treatment) and B (3.5-h
treatment) demonstrate that ALLM can also slightly block basal I
B
turnover (lane 4). ALLnL and ALLM possess distinct potencies toward 26S
proteasome activity (Ki of 0.67 and 28 µM for
ALLnL and ALLM, respectively [42]), but they block
the activity of calpain equivalently (Ki of 190 and 120 nM for ALLnL and ALLM, respectively
[21]). Consequently, their similar effects on
I
B
degradation suggest that this process may be calpain mediated.
Other calpain inhibitors, such as calpeptin (50% inhibitory dose of 52 nM against calpain I) and a cysteine protease inhibitor, E64-d, are
also effective at partially inhibiting I
B
proteolysis (Fig. 6A
and B, lanes 5 and 6, respectively). Higher doses of ALLnL, ALLM,
calpeptin, and E64-d are toxic to the cells and do not further inhibit
I
B
turnover (not shown). Since calpains require calcium for their
activity, we also examined the effects of BAPTA-AM, an intracellular
calcium chelator, and EGTA, an extracellular calcium chelator
(55). BAPTA-AM and EGTA show marked inhibitory activities
both in the Western blot assay (Fig. 6A and B) and the pulse-chase
assay (Fig. 6D and E). Equivalent doses of calpeptin, E64-d, EGTA, and
BAPTA-AM do not affect LPS-stimulated I
B
degradation in
70A/3-CD14 cells (Fig. 6C, lanes 5, 6, and 10; results for EGTA not
shown). Also, calpeptin, E64-d, and EGTA are incapable of blocking
I
B
degradation induced by LPS and cycloheximide in WEHI231
cells (not shown). In contrast, the proteasome inhibitors ALLnL,
ALLM, and ZLLF block LPS-induced degradation of I
B
,
resulting in the accumulation of hyperphosphorylated forms in pre-B
(Fig. 6C, lanes 3, 4, and 7) and WEHI231 cells (Fig. 5). A lysosomal
inhibitor, NH4Cl, is ineffective but TPCK is effective for
inhibiting both processes (Fig. 6A and C, lanes 9 and 8, respectively)
as reported previously (34, 35). NH4Cl does not
block calpain activity, but TPCK does (8). These results demonstrate that calcium chelators and some calpain inhibitors can
selectively block high constitutive I
B
turnover.

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FIG. 6.
Calpain inhibitors and calcium chelators block rapid
I B proteolysis in WEHI231 cells. (A) Calpain inhibitors and
calcium chelators block basal I B turnover in WEHI231 cells.
WEHI231 cells were incubated with cycloheximide (Cx; 20 µg/ml) and
the inhibitors for 1.5 h prior to Western blot analysis using
I B antibody. The inhibitors used were ALLnL (50 µg/ml), ALLnM
(50 µg/ml), calpeptin (10 µg/ml), E64-d (25 µg/ml), ZLLF (2 µg/ml), TPCK (12.5 µg/ml), NH4Cl (30 mM), BAPTA-AM
(30µM), and DMSO (0.2%). Lanes 3 to 11 had same final DMSO
concentrations. (B) Longer treatment of WEHI231 cells with inhibitors.
WEHI231 cells were treated with various inhibitors plus cycloheximide
for 3.5 h and analyzed as described above. The concentrations of
inhibitors were the same as specified above. EGTA (lane 8) was at 2.5 mM (final concentration). (C) Calpain inhibitors and calcium chelators
do not block LPS-inducible I B degradation in 70Z/3-CD14 cells.
70Z/3-CD14 cells were pretreated with inhibitors at concentrations as
in panel A for 30 min and then treated with LPS (1 µg/ml) for 15 min.
I B was visualized as described above, and the positions of
I B (filled arrow) and hyperphosphorylated I B (open arrow)
are shown on the left. Note the presence of I B -P in lanes 3, 4, and 7. A band seen above the I B protein is a nonspecific band.
(D) Pulse-chase experiment of I B in WEHI231 cells treated with
various inhibitors. WEHI231 cells were pulse-labeled for 2 h,
rinsed with growth medium and incubated with 50 µg of ALLnL per ml
(lanes 5 to 8) and 30 µM BAPTA-AM plus 1.25 mM EGTA (lanes 9 to 12)
or untreated for 15 min. Samples were terminated immediately after
addition of inhibitors (lanes 1, 5, and 9). At various time points
thereafter, equivalent numbers of cells were terminated for each
condition. The DMSO control (lane 13) was treated for a total of 3 h 15 min (equivalent to 3-h time points in other conditions). I B
was immunoprecipitated and visualized as for Fig. 2E. (E)
Quantification of I B bands in panel D. The dried gel was exposed
to a PhosphorImager cassette, scanned with a PhosphorImager, and
quantified by ImageQuant, and the values were plotted by using the OT
values as 100% against time in hours.
|
|
Calcium chelators also block constitutive p50-c-Rel activity.
We previously showed that TPCK blocks both rapid I
B
degradation
and constitutive p50-c-Rel activity (34). If rapid I
B
proteolysis is involved in constitutive p50-c-Rel activation, inhibitors of rapid but not signal-inducible I
B
degradation should also block constitutive p50-c-Rel activity. Thus, we examined the effects of doses of calpeptin, E64-d, and BAPTA-AM with or without
EGTA on the level of constitutive p50-c-Rel activity. BAPTA-AM is able
to selectively reduce the level of nuclear p50-c-Rel DNA binding in a
dose-dependent manner (Fig. 7A, lanes 2 to 6). This inhibitory effect of BAPTA-AM can be augmented by
simultaneous addition of EGTA (lanes 8 to 12). EGTA can also inhibit
this process alone (compare lanes 1 and 7). This inhibitory effect is
not due to direct inhibition of the DNA binding activity, because
BAPTA-AM with or without EGTA does not inhibit p50-c-Rel DNA binding
activity when directly added to nuclear extracts isolated from
untreated WEHI231 cells (Fig. 7B). This inhibitory effect is also not a result of NF-
B nuclear transport blockage, because BAPTA-AM with or
without EGTA did not block LPS-induced NF-
B nuclear transport (Fig.
7C). The effects of BAPTA-AM and EGTA are not only dose dependent but
also time dependent, because the level of constitutive p50-c-Rel
activity is progressively reduced over the 3-h period examined (Fig.
7D, lanes 2 to 4 and 5 to 7, respectively). Similarly, calpeptin
and E64-d can also selectively reduce the level of p50-c-Rel activity,
although not as efficiently as BAPTA-AM and EGTA (not shown).
These results demonstrate that inhibitors capable of blocking rapid
I
B
proteolysis can also selectively block constitutive p50-c-Rel
activity in murine B cells. Furthermore, there is a correlation between
the degree of inhibition of I
B
degradation and p50-c-Rel
activity in WEHI231 cells.

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FIG. 7.
Calcium is essential for the maintenance of constitutive
p50-c-Rel activity in WEHI231 cells. (A) EMSA of WEHI231 cells treated
with BAPTA-AM with or without EGTA. WEHI231 cells were treated with
various doses of BAPTA-AM without (lanes 2 to 6) or with (lanes 8 to
12) EGTA (2.5 mM). Lane 1, DMSO alone (0.2%); lane 7, DMSO plus EGTA;
lane 13, without a nuclear extract. Position of the p50-c-Rel
heterodimer is shown by the filled arrow, whereas a p50 homodimer is
shown by an open arrow. (B) BAPTA-AM and EGTA do not directly block
p50-c-Rel DNA binding activity. A nuclear extract prepared from
untreated WEHI231 cells was incubated with doses of BAPTA-AM (lanes 2 to 4), EGTA (lane 5), or BAPTA-AM plus EGTA (lanes 6 to 8) for 40 min
and analyzed by EMSA. An area of the gel with p50-c-Rel complex is
shown (arrow). (C) BAPTA-AM and EGTA do not block LPS-induced p50-RelA
binding activity in 70Z/3-CD14 cells. 70Z/3-CD14 cells were treated
with doses of BAPTA-AM without (lanes 3 to 5) or with (lanes 7 to 9)
EGTA or with EGTA alone (lane 6) and treated with LPS (1 µg/ml) for
15 min, and nuclear extracts were analyzed by EMSA. Lane 1, unstimulated cells; lane 2, DMSO- and LPS-treated cells. An area of the
gel with p50-RelA complex is shown (arrow). (D) Time course of
inhibition of p50-c-Rel binding in WEHI231 cells by BAPTA-AM and EGTA.
WEHI231 cells were treated with either BAPTA-AM (30 µM; lanes 2 to 4)
or EGTA (2.5 mM; lanes 5 to 7) for the indicated periods of time.
Nuclear extracts were analyzed by EMSA as described above. Lane 1, untreated cells. The filled arrow points to p50-c-Rel, while the open
arrow points to p50 homodimer. (E) Pulse-chase of cytoplasmic and
nuclear c-Rel protein in WEHI231 cells. WEHI231 cells were
pulse-labeled with [35S]Met-Cys for 3.5 h, washed
with growth medium, and incubated in growth medium, and equal cell
numbers were terminated at time points shown. The cells were then
fractionated into cytoplasmic and nuclear pools, and each pool was
immunoprecipitated with anti-c-Rel antibody. Cytoplasmic fractions used
for immunoprecipitation were one-fourth the level of the nuclear
fractions for each time point. The exposure time for nuclear and the
cytoplasmic fractions was the same (3 days). Quantification by
PhosphorImager demonstrated that the half-life of cytoplasmic c-Rel was
>3 h, while that for nuclear c-Rel was 57 min.
|
|
Nuclear c-Rel is short-lived.
I
B
is complexed with c-Rel
in the cytoplasm (Fig. 1D) and undergoes rapid degradation. Since
inhibition of I
B
degradation reduces nuclear p50-c-Rel DNA
binding activity in a time-dependent manner (Fig. 7D), this process is
associated with the maintenance of constitutive p50-c-Rel activity.
Thus, continuous nuclear transport of cytoplasmic p50-c-Rel dimers may
be required to maintain nuclear p50-c-Rel activity. If this model is
correct, then the nuclear p50-c-Rel complex must have a relatively
short half-life to account for the progressive loss of the nuclear DNA
binding activity. To examine this possibility, the nuclear half-life of
c-Rel protein was measured by pulse-chase experiments. The half-life of
the cytoplasmic c-Rel was also measured as an internal control. The cytoplasmic c-Rel has a half-life of more than 3 h (Fig. 7E, lanes 1 to 4). In contrast, the half-life of nuclear c-Rel is only 57 min
(lanes 5 to 8; data quantified with a PhosphorImager not shown). This
short nuclear half-life correlates with the progressive loss of the
p50-c-Rel DNA binding activity seen in Fig. 7D. Consequently, reduced
DNA binding activity is likely due to reduced protein levels. Thus,
these results suggest that a continuous nuclear transport of c-Rel
complex is required to maintain nuclear p50-c-Rel DNA binding
activity. They further suggest that p50-c-Rel nuclear transport is
maintained by rapid proteolysis of associated I
B
in the
cytoplasm.
Basal I
B
degradation is slow and proteasome dependent in
WEHI231 cells.
The results thus far are consistent with the
hypothesis that rapid I
B
proteolysis in the cytoplasm maintains
nuclear p50-c-Rel activity in WEHI231 B cells. If basal I
B
degradation is rapid in unstimulated B cells, it may also significantly
contribute to constitutive p50-c-Rel activity. Accordingly, I
B
degradation has been suggested to regulate prolonged and constitutive
NF-
B activities (32, 54). To directly examine this
possibility, the level of I
B
degradation and its proteasome
dependence were examined in unstimulated WEHI231 cells. The pulse-chase
experiment shown in Fig. 8A and
quantification shown in 8B demonstrate that the half-life of I
B
was >3 h, much longer than that of I
B
(~40 min [Fig. 6E]).
The different degradation levels of I
B
(rapid) and I
B
(slow) are not due to associated Rel/NF-
B proteins, because most
I
B
is also found complexed with c-Rel (Fig. 8C). To determine if
the difference of degradation is due to the different protease systems,
the effect of the proteasome-specific inhibitor lactacystin was
examined. Figure 8D shows a Western blot analysis demonstrating that
lactacystin can efficiently block basal I
B
degradation over a 3-h
period (compare lanes 2 to 4 and 5 to 7). The dose response shown in
Fig. 8E demonstrates that relatively low doses (15 to 20 µM) of
lactacystin are sufficient to completely block basal I
B
degradation (lanes 5 and 6). These results demonstrate that both
I
B
and I
B
are associated with c-Rel but basal I
B
degradation is proteasome dependent in WEHI231 cells whereas I
B
degradation is not.

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FIG. 8.
I B is complexed with c-Rel and degraded slowly by
the proteasome-dependent pathway in WEHI231 cells. (A)
Pulse-chase of I B in WEHI231 cells. WEHI231 cells were
pulse-labeled with [35S]Met-Cys for 3.5 h and chased
with growth medium for the indicated periods. The labeled I B
protein was immunoprecipitated with anti-I B antibody in the
presence of various protease inhibitors and phosphatase inhibitors as
described in Materials and Methods. The position of I B is shown
by the arrow, and the molecular weight markers are shown on the right.
(B) Quantification of I B by PhosphorImager. The gel in
panel A was exposed to a PhosphorImager, and I B bands were
quantified. The value at the start of the chase (OT) was used as 100%,
and the fractions remaining were plotted against time. The half-life
was slightly greater than 3 h. (C) I B is associated with
c-Rel in WEHI231 cells. Coimmunoprecipitation and Western blotting were
performed as for Fig. 1D. The blots were first incubated with
HRP-protein A in the presence of sodium azide to saturate the Igµ
reactivity. Sodium azide inactivated the HRP activity of HRP-protein A
bound to the Igµ heavy chain. The blot was then washed extensively,
incubated with anti-I B antibody, rinsed, incubated with
HRP-protein A without sodium azide, and developed by ECL. No Igµ
chain is visible in the blot shown. The arrow points to the I B
band. (D) Time course of lactacystin-mediated inhibition of basal
I B degradation in WEHI231 cells. WEHI231 cells were treated with
cycloheximide (20 µg/ml) and lactacystin (25 µM) for the indicated
periods of time, and the I B was detected by Western blotting and
ECL reaction using HRP-conjugated goat anti-rabbit antibody. (E) Dose
response of lactacystin-mediated inhibition of basal I B
degradation in WEHI231 cells. WEHI231 cells were treated with
cycloheximide (Cx; 20 µg/ml) and lactacystin at doses shown for
3 h, and I B was detected as described above.
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|
I
B
is basally phosphorylated and cytoplasmic in WEHI231
cells.
Prolonged activation of NF-
B has been suggested to
involve production of hypophosphorylated I
B
which shields NF-
B
from I
B
proteins and allows nuclear transport of NF-
B
(52). To examine if such hypophosphorylated nuclear I
B
is constitutively expressed in WEHI231 cells, we compared the
forms (slower-migrating phosphorylated versus faster-migrating
hypophosphorylated) and subcellular localization (nuclear versus
cytoplasmic) of I
B
in unstimulated WEHI231 B cells.
70Z/3-CD14 pre-B cells were also analyzed as a control. There is no
difference in level and form of I
B
in these two cell types (Fig.
9A), suggesting that
hypophosphorylated I
B
is not present at augmented level in
WEHI231 cells. The absence of mobility difference between
I
B
in these cell types is not technical, because the
faster-migrating hypophosphorylated I
B
protein can be detected
when pre-B cells are stimulated with LPS for prolonged periods (Fig.
9B). Furthermore, I
B
is mostly cytoplasmic in unstimulated
WEHI231 cells (Fig. 9C, lanes 7, 9, and 11) as in 70Z/3-CD14 cells
(lanes 1, 3, and 5), further arguing against the presence of
significant level of constitutively nuclear hypophosphorylated I
B
protein. In contrast, two nuclear proteins, Sp-1 and lamin B, are seen
only in the nuclear fractions, demonstrating that the
cytoplasmic/nuclear fractionation is complete in these experiments. These results together with the results shown in Fig. 8 suggest that
I
B
is not a regulator of constitutive p50-c-Rel activity in
WEHI231 immature B cells.

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FIG. 9.
Level, migration pattern, and subcellular localization
of I B are the same in WEHI231 cells as in 70Z/3-CD14 cells. (A)
Steady-state level of I B in WEHI231 and 70Z/3-CD14 cells. The
Western blot shown in Fig. 1C was also probed with anti-I B
antibody to examine the relative level of I B protein (arrow).
Samples were as in Fig. 1C. (B) Hypophosphorylated I B produced
following prolonged stimulation of 70Z/3-CD14 with LPS. 70Z/3-CD14
cells were treated with LPS (1 µg/ml) for up to 8 h. Equal
fractions of cells were terminated at each time point and analyzed by
Western blotting using anti-I B antibody. The filled arrow shows
basally phosphorylated I B , while the open arrow points to newly
synthesized hypophosphorylated I B (lanes 4 to 6). (C) I B is
cytoplasmic in both WEHI231 and 70Z/3-CD14 cells. Three sets of
70Z/3-CD14 and WEHI231 cells were fractionated into cytoplasmic (C) and
nuclear (N) fractions independently as described in Materials and
Methods. The resulting fractions were analyzed by Western blotting
using anti-I B antibody. (D) Sp-1 and lamin B are nuclear. The
blot in panel C was reprobed with antibodies against nuclear proteins
Sp-1 (open arrow) and lamin B (closed arrow). The bands were visualized
with HRP-conjugated anti-mouse antibody followed by ECL reaction. An
asterisk points to an unknown protein which is exclusively localized in
the cytoplasmic fraction.
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 |
DISCUSSION |
In this study, we present several lines of evidence for a novel
I
B
degradation process that coexists with the well-characterized S32/36 phosphorylation-K21/22 ubiquitination-proteasome pathway (Fig.
10A). We suggest a model (Fig. 10B) in
which continuous nuclear transport of p50-c-Rel dimer is induced by a
high-level basal degradation of associated I
B
protein. This
continuous nuclear transport counterbalances the short half-life of
nuclear c-Rel complex in WEHI231 cells. The constitutive p50-c-Rel
presumably activates transcription of genes encoding I
B
, c-Rel,
and p50 to replace the degraded pool for the maintenance of this
dynamic cycle. We further suggest that rapid I
B
proteolysis
requires free calcium, likely imported from outside the cell.

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FIG. 10.
Signal-inducible and constitutive Rel/NF- B
activation pathways in murine B cells. (A) A signal-inducible NF- B
activation pathway in 70Z/3-CD14 pre-B cells. The NF- B activation
pathway induced by extracellular stimuli involves activation of a
specific I B kinase resulting in site-specific phosphorylation at
serine residues 32 and 36. This phosphorylation event signals the
multiubiquitination event primarily at lysine residues 21 and 22 by a
ubiquitin-conjugating enzyme system, E1-E2-E3 (14). Finally,
the multiubiquitinated I B protein while still complexed with
NF- B is then selectively and extensively degraded by the 26S
proteasome complex. The liberated NF- B migrates into the nucleus and
regulates target genes, including that of I B . If an activating
signal is terminated or downregulated, the newly synthesized I B
will terminate the NF- B activity, resulting in transient NF- B
activation. Extracellular signals can also induce degradation of
I B , resulting in prolonged NF- B activation. (B) Constitutive
p50/c-Rel activation pathway in WEHI231 cells. This pathway is a novel
Rel/NF- B activation pathway which is distinct from the conventional
signal-inducible pathway shown in panel A. This constitutive pathway
does not require the S32/36 phosphorylation or the ubiquitin-proteasome
pathway. It likely depends on high-level constitutive I B
degradation. This degradation requires free calcium, likely maintained
by continuous influx through a calcium channel. Continuous I B
degradation allows continuous nuclear transport of p50-c-Rel complex,
which has a relatively short half-life of only 1 h in the nucleus.
p50-c-Rel then activates the transcription of genes encoding I B ,
c-Rel, and p50/p105 to replenish the degrading pools.
|
|
I
B
is a target of two distinct proteases, constitutive
proteasome-independent protease and the signal-inducible 26S
proteasome.
Rel/NF-
B activation induced by a wide variety
of extracellular signals requires proteolysis of the associated
I
B
by the phosphorylation-dependent ubiquitin-proteasome pathway
(reviewed in references 4, 5, and 58). This
conclusion is supported by evidence showing that (i) various proteasome
inhibitors prevent I
B
degradation, (ii) the stabilized I
B
is hyperphosphorylated at S32/36 and multiubiquitinated, (iii)
S32/36A phosphorylation site mutant is resistant to signal-inducible
ubiquitination and degradation, (iv) K21/22R mutant allows
signal-inducible S32/36 phosphorylation but retards
ubiquitination and degradation, (v) the modified forms of I
B
are
still bound to NF-
B, (vi) proteasome inhibitors also block
Rel/NF-
B appearance in the nucleus, and finally (vii) an S32/36A
mutation or deletion of the N-terminal phosphorylation and
ubiquitination sites produces a dominant-negative mutant of
I
B
that is capable of preventing Rel/NF-
B activation induced
by many extracellular signals. The only reported exception thus
far is NF-
B activation following exposure to hypoxia-reoxygenation, which induces I
B
phosphorylation at tyrosine 42 and dissociation from NF-
B without degradation (24).
In the present study, we used many of these criteria to test whether
rapid I

B

proteolysis in unstimulated WEHI231 cells
is a result of
constitutive activation of a signal-inducible degradation
pathway. Our
results demonstrate that high-level constitutive
I

B

proteolysis
is not mediated by a phosphorylation-ubiquitin-proteasome
pathway.
Since this process involves degradation of I

B

protein
without a
shift of mobility of I

B

in polyacrylamide gel electrophoresis,
it
is also not a tyrosine phosphorylation-mediated event (
24).
Additionally, it is not due to overproduction of free I

B

protein,
which degrades rapidly through a
phosphorylation-ubiquitination-independent
but proteasome-dependent
pathway in HeLa cells (
29). Rapid degradation
of free
I

B

also requires basal phosphorylation in the C-terminal
PEST
sequence (
47). It is not known whether this basal PEST
phosphorylation is required for high turnover in WEHI231 cells.
Although constitutive I

B

degradation cannot be inhibited by
different proteasome inhibitors, the proteasome-dependent pathway
can
be induced by LPS (with or without cycloheximide) stimulation
of
WEHI231 cells. Thus, constitutive I

B

proteolysis in WEHI231
cells represents a novel I

B

degradation pathway which is
present
together with the signal-inducible pathway. Identification of
amino acid sequence requirements, such as the C-terminal PEST
sequence
and the basal phosphorylation sites, for constitutive
I

B

degradation in WEHI231 cells will help to further define
this novel
I

B

degradation pathway.
Protease(s) responsible for rapid I
B
proteolysis
in WEHI231 cells.
What is the protease(s) responsible for
constitutive I
B
degradation in WEHI231 cells? This degradation
process cannot be prevented by lysosomal or proteasome inhibitors. This
degradation pathway is, however, sensitive to various inhibitors of
calpains. Calpains are calcium-dependent cysteine proteases that play
important physiological roles, including those for platelet functions
(15). Calpains are also associated with a number of
pathological conditions, such as ischemia, cataract, muscular
dystrophy, and arthritis (15, 44). There are two major forms
of calpains, calpain I (µ-calpain) and calpain II (m-calpain). Either
or both can be found in the cytoplasm of most mammalian cells
(15). Calpain activity can be blocked by high levels of
cell-permeable inhibitors, such as ALLnL, ALLM, and calpeptin, as well
as cysteine protease inhibitors, such as leupeptin (ALLR) and E64-d
(15, 33). Additionally, removal of free calcium can also
block in vivo calpain activity. We have shown that high basal
I
B
degradation is blocked by calpain inhibitors. The rank
order of inhibitor potency against I
B
proteolysis in WEHI231
cells is BAPTA-AM and EGTA > calpeptin and E64-d > ALLnL and ALLM. These inhibitors may directly modulate the activity of
the I
B
protease, or they may inhibit an upstream event involved in activation of the protease. These results nevertheless suggest a
potential role for calpain in high constitutive I
B
degradation in
WEHI231 cells.
Rapid I
B
proteolysis maintains continuous nuclear
transport of p50-c-Rel to counterbalance short-lived nuclear
p50-c-Rel complex.
We hypothesized that high I
B
proteolysis
in unstimulated B cells is responsible for the maintenance of
constitutive p50-c-Rel activity (34). This hypothesis
predicts that conditions which prevent high basal I
B
degradation
should also block constitutive p50-c-Rel activity. Additionally,
conditions that fail to block the former would not inhibit the latter.
Consistent with this hypothesis, proteasome inhibitors or lysosomal
inhibitors fail to block I
B
turnover and also p50-c-Rel
activity. In contrast, calcium chelators and some calpain inhibitors
inhibit I
B
degradation and constitutive p50-c-Rel activity.
Additionally, there is a correlation between the effectiveness of these
inhibitors for blocking I
B
degradation and inhibiting
constitutive p50-c-Rel activity. These results strongly suggest a
causal relationship between high basal I
B
degradation and
constitutive p50-c-Rel activity in WEHI231 cells. However, it is also
possible that rapid I
B
degradation is a mechanistically unrelated
paralleling event and that its inhibition increases the relative level
of I
B
resulting in artificial blockage of constitutive
p50-c-Rel activity.
Inhibition of I

B

degradation reduces nuclear p50-c-Rel activity
in a time-dependent manner. Maximum loss of p50-c-Rel activity
in the
nucleus may require 3 to 4 h, depending on the inhibitors
used.
This time lag may be due to a slow inactivation of the existing
nuclear
p50-c-Rel complex. Correspondingly, the progressive loss
of p50-c-Rel
DNA binding activity correlates with the half-life
of nuclear c-Rel
protein. The short half-life of nuclear c-Rel
is not due to inhibition
by nuclear I

B

protein, since none is
detected in WEHI231 nuclei.
Therefore, this inactivation mechanism
appears distinct from the
autoregulatory mechanism where excess
free I

B

enters the nucleus
and rapidly shuts off an otherwise
long-lasting NF-

B activity
(
3). It is of interest to determine
if the loss of nuclear
c-Rel is due to degradation in the nucleus
or to cytoplasmic export.
Regardless of the exact mechanism, these
results demonstrate that
continuous nuclear import of the c-Rel
complex is necessary to maintain
constitutive p50-c-Rel activity
in WEHI231 cells.
I
B
does not regulate constitutive p50-c-Rel activity.
I
B
degradation has been suggested to regulate prolonged NF-
B
activity induced by extracellular stimuli or constitutive activity
induced by infection with the human T-cell leukemia virus type 1 (20, 32, 54). These studies raise the possibility that
I
B
degradation also contributes to constitutive p50-c-Rel activity in WEHI231 cells. However, I
B
degradation is relatively slow (half-life of >3 h) and proteasome dependent. Since
proteasome inhibitors capable of blocking I
B
degradation do
not affect constitutive p50-c-Rel activity, I
B
degradation is
not a regulatory contributor for constitutive p50-c-Rel activation.
A study by Suyang et al. (
52) suggests that
hypophosphorylated I

B

can induce prolonged NF-

B
activity. Hypophosphorylated
I

B

is induced by prolonged
stimulation with certain agents,
such as LPS or interleukin-1.
Prolonged stimulation induces I

B
degradation by
proteasome-mediated pathway followed by new synthesis
of
hypophosphorylated I

B

. In the continual presence of stimuli,
newly synthesized I

B

remains hypophosphorylated and is believed
to associate with NF-

B at a higher affinity than I

B

and allow
NF-

B nuclear translocation. Thus, this form of I

B

is found
in
the nucleus in association with NF-

B and the target DNA binding
site
(
52). If hypophosphorylated I

B

is constitutively
produced
in unstimulated WEHI231 cells, it may contribute to
constitutive
p50-c-Rel activity. While this report was under review, a
report
by the above-cited group demonstrated that WEHI231 cells
contained
this hypophosphorylated I

B

protein in the nucleus
(
40). However,
our results demonstrate that the majority of
detectable I

B

is
not hypophosphorylated (Fig.
9A), is cytoplasmic
(Fig.
9C), and
is associated with c-Rel (Fig.
8C). Although it was also
suggested
that I

B

degradation is not inhibited by proteasome
inhibitors
by the same group (
40), we were able to block its
degradation
by various proteasome inhibitors. We were also able to
detect
I

B

mobility shift in Western blots due to S32/36
phosphorylation
and multiubiquitination which were not detected by the
above-cited
investigators in WEHI231 cells. These discrepancies may
stem from
the differences of procedures used or cell line variation.
Our
results, however, demonstrate that I

B

is unlikely to play a
regulatory role for constitutive p50-c-Rel activity in WEHI231
cells.
Furthermore, they suggest an intriguing proteolytic process
that
induces selective degradation of I

B

protein without affecting
I

B

proteins, even though both are associated with c-Rel in the
cytoplasm of WEHI231 cells. Thus, future investigations aim to
define
the protease responsible for high basal I

B

proteolysis
as well as
the regulatory mechanism(s) for its activity in WEHI231
cells and in
other B cells.
 |
ACKNOWLEDGMENTS |
We thank members of the Verma laboratory, M. Maki, and Z. J. Chen for many discussions. We appreciate R. Wisdom, E. Oltz, E. T. Alarid, and J. Stevenson for critical reading of the manuscript. We
also acknowledge P. Chaio for murine I
B
cDNA, J. Stevenson for
generating pLHL-CAHA and pLHL-CAHA-mI
B
clones, E. J. Corey for providing lactacystin, M. Maki for E64-d (through Taisho
Pharmaceutical), F. Mercurio for ZLLF, R. Naviaux for pCLeco vector, C. Akazawa for CA promoter, and R. J. Ulevitch for 70Z/3-CD14 cells.
This work was funded by a Howard Hughes Medical Institute grant through
the UW Medical School and a Shaw Scientist Award from Milwaukee
Foundation to S.M. S.D.S. is a trainee under NIH predoctoral training grant T32GM07215.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Program in Cell
and Molecular Biology, Department of Human Oncology, K4/554 Clinical Science Center, 600 Highland Ave., Madison, WI 53792. Phone: (608) 262-9281. Fax: (608) 262-8430. E-mail:
miyamoto{at}humonc.wisc.edu.
 |
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