INTRODUCTION

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Proteolysis is one mechanism by which cells irreversibly control protein functions. The functions of many regulatory proteins, such as oncoproteins, tumor suppressors, cell cycle control proteins, and transcription factors, are controlled by modulated proteolysis (14, 41). In the case of Rel/NF-B, a family of transcription factors important for regulation of many cellular functions (5, 58), the proteolytic control is imposed not on the factors themselves but on the associated inhibitor protein, IB. Thus, an important area of Rel/NF-B studies focuses on the molecular mechanisms of IB degradation pathways.

IB comprises a family of related proteins that includes IB, IB, IB/p105, IB/p100, and IB (4). IB members form trimeric complexes with dimers of Rel/NF-B family members, p50 (NFKB1), p52 (NFKB2), RelA (p65), c-Rel, and RelB (4, 5, 58). Different IB members preferentially associate with specific Rel/NF-B dimers and sequester them in the cytoplasm (37). Upon stimulation with extracellular signals, such as cytokines, growth factors, chemical stresses, UV or ionizing radiation, bacterial lipopolysaccharide (LPS), or tetradecanoyl phorbol acetate, many IB members undergo phosphorylation-dependent degradation to release active Rel/NF-B dimers (5, 58). Signal-inducible degradation of IB, IB, and IB requires site-specific phosphorylation of serines 32 and 36, 19 and 23, and 157 and 161, respectively (9, 10, 16, 32, 60). These serines are conserved among family members; therefore, the same or similar kinases may be responsible for phosphorylation (4). Phosphorylation serves as a signal for subsequent attachment of multiple 76-amino-acid ubiquitin polypeptides (1, 12, 43). Ubiquitination targets IB to degradation by the 26S proteasome (12). Consequently, signal-inducible IB degradation and Rel/NF-B activation pathways can be efficiently blocked by various cell-permeable proteasome inhibitors (5, 58). Extracellular signal and cell type dictate which of coexisting Rel/NF-B/IB complexes become targeted for IB degradation and transient or long-term NF-B activation (54, 58, 60). The activated Rel/NF-B dimers migrate into the nucleus, bind to decameric B DNA binding sites, and regulate transcription of a wide variety of genes. These include Rel/NF-B/IB members (37) and those involved in immune, inflammatory, and acute-phase responses (28). Rel/NF-B proteins may also regulate oxidative stress responses (46), proliferation (17, 27, 49, 50), and apoptosis (7, 56, 59). Thus, IB degradation is one essential event in signaling pathways leading to Rel/NF-B activation and subsequent target gene activation. To date, degradation by the 26S proteasome is the only known process for IB degradation in cells (4, 5, 58).

In mouse splenic B cells and B-cell lines, Rel/NF-B activity is constitutively nuclear and is believed to regulate immunoglobulin kappa light chain (Ig) gene transcription (45, 48). The major constitutive dimers in these cells are a p50 homodimer and a p50-c-Rel heterodimer (31, 36). c-Rel contains a C-terminal transactivation domain which p50 lacks (6, 26); therefore, p50-c-Rel is considered to be the major transcriptional activator. In these B cells, the expression of p50/p105, c-Rel, and IB is augmented, compared to pre-B cells (36), presumably by autoregulation through the B sites in their genes (13, 22, 53). Other IB members are also expressed in B cells, but the level of IB is lower than that in pre-B cells (25, 30). IB preferentially blocks the DNA binding of homodimeric p50 protein (30). Coincidentally, the DNA binding of p50 homodimer is increased in B cells. Among the IB members, IB is selectively and rapidly degraded in B cells despite its high synthetic rate (34). IB can efficiently inhibit the DNA binding of p50-c-Rel present in B cells (34). In the present study, we examined this rapid IB proteolysis and its relationship to constitutive p50-c-Rel activity in WEHI231 murine B cells. Specifically, we examined the role of IB S32/36 phosphorylation and ubiquitin-proteasome degradation. In addition, we analyzed degradation, basal phosphorylation, and nuclear localization of IB in relation to constitutive p50-c-Rel activation. Our results suggest that a novel calcium-dependent but proteasome-independent IB proteolysis maintains constitutive p50-c-Rel activity in WEHI231 murine B cells.

	MATERIALS AND METHODS

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Cell culture. WEHI231 cells were maintained in RPMI 1640 medium (Cellgro; Mediatech) supplemented with 10% fetal bovine serum (HyClone Laboratory, Inc.), 5 × 10⁵ M -mercaptoethanol, 1,250 U of penicillin G (Sigma), and 0.5 mg of streptomycin sulfate (Sigma) per ml in a 5% CO₂ humidified incubator (Forma). 70Z/3-CD14 cells were maintained as described above in the presence of 1 mg of G418 (Gibco-BRL) per ml in the medium. The cells were passaged twice weekly before reaching a cell density of 2 × 10⁶ ml.

Chemicals. Calpain inhibitor I (ALLnL), calpain inhibitor II (ALLM), tosylphenylalanine chloromethyl ketone (TPCK), pyrrolidine dithiocarbamate (PDTC), NH₄Cl, dimethyl sulfoxide (DMSO), bacterial LPS, and cycloheximide were purchased from Sigma. Calpeptin (ZLnL) was from Calbiochem, and BAPTA-AM was from NovaBiochem. E64-d and ZLLF were generous gifts from K. Hanada (Taisho Pharmaceutical, Japan) and F. Mercurio (Signal Pharmaceutical), respectively. Lactacystin was generously provided by E. J. Corey (Harvard University). The stock solutions were prepared in DMSO at 50 mg/ml or 100 mM (ALLnL, ALLM, calpeptin, and E64-d), 50 mM (tosylleucine chloromethyl ketone [TLCK] and TPCK), 100 mM (PDTC), 4 mg/ml (ZLLF), 30 mM (BAPTA-AM), and 25 mM (lactacystin and 25% DMSO). NH₄Cl and cycloheximide were prepared in H₂O at 1 M and 10 mg/ml, respectively. LPS was prepared in the growth medium at 1 mg/ml. In every experiment presented, the amount of DMSO was corrected in each sample such that the effect of DMSO was controlled. All stocks were stored in aliquots either at 70 or 20°C.

Cell preparation and Western blotting. All incubations were performed in 1 ml of growth medium in 1.5-ml Eppendorf tubes secured on Labquaker (Barnstead/Thermolyne) which was placed in a 37°C incubator. The samples were continuously mixed by slow rotation for the period described for each experiment. Cells were then pelleted at 13,000 × g for 10 s in an Eppendorf centrifuge, rinsed twice with phosphate-buffered saline (PBS), resuspended in small amounts of PBS, and lysed by addition of 2× Laemmli buffer. The cell samples were immediately boiled for 10 min to inactivate proteases and phosphatases, electrophoresed in sodium dodecyl sulfate (SDS)-10 or 12.5% polyacrylamide gels, electroblotted (Bio-Rad) onto an Immobilon-P nylon membrane (GIBCO), and then incubated with appropriate IgG fractions in PBS containing 5% nonfat dry milk (Carnation), 0.2% Tween 20 (Sigma), and 0.02% sodium azide (Sigma). IgGs against IB (C21), IB (C20), c-Rel (C), RelA (A), and Sp-1 (1C6) were from Santa Cruz Biotechnology. The antibody against lamin B was from MatriTect. Following an overnight incubation, the blots were washed twice with a wash buffer (PBS-0.2% Tween 20) for 30 min each time at room temperature and then further incubated for 2 h with a secondary horseradish peroxidase (HRP)-conjugated donkey anti-rabbit antibody (Amersham), HRP-conjugated protein A (Amersham), or HRP-conjugated donkey anti-mouse antibody (Oncogene Science). The blots were washed twice as above and developed by using the enhanced chemiluminescence (ECL) procedure as specified by the manufacturer (Amersham).

In vivo labeling. Appropriate number of cells were rinsed with Met Cys RPMI 1640 medium (CellGro), resuspended at 10⁷ cells/ml, and pulse-labeled with [³⁵S]Met-Cys mixture (Amersham) as described previously (34). Cells were then rinsed twice with growth medium without the label and chased for indicated periods. Cells were then pelleted, rinsed twice with PBS, and frozen at 70°C until all samples were terminated. Samples used for immunoprecipitation experiments were resuspended in IP buffer (20 mM Tris-Cl [pH 8.0], 250 mM NaCl, 5 mM EDTA, 0.5% Nonidet P-40, 0.5% deoxycholic acid, 0.1% SDS, protease and phosphatase inhibitors) supplemented with 0.5% SDS, boiled for 10 min, diluted fivefold with IP buffer, and immunoprecipitated as described above. Following washes, the immunoprecipitates were boiled in the presence of 1 mg of bovine serum albumin and 0.5% SDS in IP buffer, diluted fivefold, and reprecipitated for the second time to reduce backgrounds. The immunoprecipitates were rinsed four times with IP buffer, resuspended in 2× Laemmli buffer, boiled for 10 min, and electrophoresed in SDS-10 or 12.5% polyacrylamide gels. The gels were processed as described previously (34). Nuclear and cytoplasmic fractions were prepared as described above, using the 50% sucrose cushion from cell pellets prepared at each time point of the pulse-chase experiments. The gels were exposed to either X-ray film for generation of figures or a PhosphorImager for quantification using the ImageQuant program.

Retrovirus construction and infection. The murine IB cDNA was cloned into the pLHL-CA retroviral vector as described previously (57). An oligonucleotide (5'-TATACGCGTTATGGCTAGCTACCCATACGACGTCCCAGATTACGCGGACTTAGGATCCGTTAACAAGCTTAGATCTTC-3') containing the hemagglutinin (HA) tag (underlined) (19) and three amino acids at both N and C termini was cloned into the MluI and BglII sites within the multiple cloning sites of the retroviral vector. The resulting vector is pLHL-CAHA. The murine IB cDNA clone was amplified by PCR, and the product was digested with BamHI and HindIII and cloned into the BamHI and HindIII sites downstream of the HA tag. This cloning procedure generated murine IB with an N-terminal HA tag in frame with a total of a 15-amino-acid extension. The S32/36A mutant was generated by site-directed mutagenesis using an oligonucleotide (5'-GTGGACGATCGCCACGACGCAGGTCTAGACGCCATGAAGGACGAGGAGTAC-3') which introduced a unique XbaI site along with change of serines 32 and 36 to alanines. The mutant clones were identified by the presence of a unique XbaI site and confirmed by sequencing. The mutant cDNA was then digested with ApaI and HindIII and cloned into ApaI and HindIII sites of the pLHL-CAHA-mIB, replacing the N-terminal wild-type (WT) sequence.

EMSA. Cell pellets were prepared as described above except that the concentration of cells used for initial incubations was 5 × 10⁶ to 10⁷ /ml. The cell pellets were stored frozen at 70°C until nuclear extract preparation. Nuclear extracts were prepared as described previously (2), and the conditions for the electrophoretic mobility shift assay (EMSA) were as published previously (36). The nature of the inducible and constitutive NF-B complexes in 70Z/3 and WEHI231 cells, respectively, has been previously published (36). The oligonucleotide used was a double-stranded 27-mer containing the Ig intronic B site (5'-CTCAACAGAGGGGACTTTCCGAGAGGCCAT-3'). Following electrophoresis in a 4% native acrylamide gel, the gels were dried, exposed to X-ray films, and developed as described above.

	RESULTS

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Total IB is rapidly degraded in WEHI231 murine B cells. The p50-c-Rel dimer is constitutively nuclear in WEHI231 murine B cells (36). We previously demonstrated that newly synthesized IB is rapidly degraded in these cells (34). In contrast, rapid proteolysis of newly synthesized IB is not seen in 70Z/3 murine pre-B cells. Coincidentally, these pre-B cells lack constitutive NF-B activity. To further address the question of rapid IB degradation in B cells, we examined the degradation of the total IB population. We used anti-IB to probe immunoblots of total cellular proteins from WEHI231 cells treated for various lengths of time with the protein synthesis inhibitor cycloheximide (Fig. 1A). A 70Z/3 cell line expressing human CD14, 70Z/3-CD14 (23), was similarly examined. The results shown in Fig. 1A demonstrate that total IB turns over more rapidly in WEHI231 (lanes 8 to 14) than 70Z/3-CD14 (lanes 1 to 7) cells. Equivalent loading between samples is shown by the presence of nonspecific protein (Fig. 1B). Although degradation is augmented, the net steady-state level of IB protein is ~2-fold higher in WEHI231 cells (Fig. 1C; compare lanes 1 and 5) due to an even greater augmentation of synthesis (34). To determine whether this rapid proteolysis is due to the presence of excess free IB protein, which has a half-life of about 30 min in Cos cells (51), we performed coimmunoprecipitation using antisera against NF-B subunit proteins. We reasoned that if free IB was produced in a large quantity to account for the overall half-life of about 40 min, then we should be able to detect some IB protein which was not bound to NF-B subunit proteins at steady state. As shown in Fig. 1D, all detectable IB coimmunoprecipitated with c-Rel (lanes 1 and 3) and no free IB was seen (lane 5). These results demonstrate that most, if not all, IB is bound to c-Rel and suggest that excess free IB is unlikely to account for faster IB turnover in B cells (WEHI231) than in pre-B cells (70Z/3-CD14).

View larger version (46K): [in this window] [in a new window]   FIG. 1.   IB is associated with c-Rel and undergoes rapid proteolysis in WEHI231 cells. (A) Total IB degrades faster in WEHI231 cells than in 70Z/3-CD14 cells. The same number of 70Z/3-CD14 and WEHI231 cells (1.4 × 106) were incubated with cycloheximide (20 µg/ml) and terminated at the time points shown. Total cell pellets were dissolved in 2× Laemmli sample buffer and immediately boiled to preserve potentially modified IB forms. The samples were electrophoresed in SDS-12.5% polyacrylamide gels, transferred to a nylon membrane, and probed with IgG against IB protein. The protein bands (arrow) were visualized by ECL reaction. (B) Loading control for blot in panel A. The blot in panel A was reprobed with IgG against RelA and developed as described above; a nonspecific band (arrow) is shown. (C) Relative steady-state levels of IB in WEHI231 and 70Z/3-CD14 cells. Serial dilutions of 70Z/3-CD14 and WEHI231 cells (shown above each lane in cell number) were loaded. Positions of IB are shown on the left (arrow). (D) IB is complexed exclusively with c-Rel in WEHI231 cells. WEHI231 cells (106) were lysed in a hypotonic buffer in the presence of various protease inhibitors and phosphatase inhibitors as described in Materials and Methods, and the cytoplasmic fraction was split into two equal fractions. One fraction was immunoprecipitated with antibody against IB (lane 1), and the unprecipitated supernatant was reimmunoprecipitated to examine the efficiency of the first precipitation (lane 2). The other half of the original fraction was first immunoprecipitated with anti-c-Rel (lane 3). The unprecipitated proteins were then immunoprecipitated with anti-RelA (lane 4), and the same procedure was repeated for final IB precipitation (lane 5). The immunoprecipitates were electrophoresed in SDS-10% polyacrylamide gels, blotted, and probed with anti-IB antibody. The IB band (filled arrow) was visualized by ECL reaction using HRP-conjugated protein A to reduce reactivity with the rabbit Igµ heavy chains used for immunoprecipitation (open arrow).

Rapid IB degradation is insensitive to proteasome inhibitors. Since 26S proteasome is the only known in vivo IB protease (4, 5, 58), the requirement of proteasome activity for rapid IB proteolysis in WEHI231 cells was next examined. We treated WEHI231 cells with cycloheximide and the proteasome inhibitor ALLnL (58). ALLnL poorly inhibited IB degradation in these cells (Fig. 2A). As a positive control, we showed that ALLnL blocks IB degradation induced by LPS in pre-B cells (Fig. 2B). We then examined the effects of a highly specific proteasome inhibitor, lactacystin (18). High doses of lactacystin (up to 75 µM) show no detectable inhibitory activity in WEHI231 cells (Fig. 2C) but block the signal-inducible IB degradation in pre-B cells (Fig. 2D). Pulse-chase experiments also demonstrated that lactacystin (even at 100 µM) is ineffective at blocking IB degradation in these B cells (Fig. 2E and quantification by PhosphorImager not shown). These results provide evidence for proteasome-independent IB proteolysis in WEHI231 cells.

View larger version (48K): [in this window] [in a new window]   FIG. 2.   Proteasome inhibitors fail to block rapid IB proteolysis in WEHI231 cells. (A) ALLnL only slightly blocks basal IB turnover. WEHI231 cells were preincubated with various concentrations of ALLnL as shown for 30 min and then treated with cycloheximide (Cx) for an additional 2 h. Cell samples were processed, and IB (arrow) was visualized. OT, samples terminated prior to addition of inhibitors. (B) ALLnL efficiently blocks LPS-induced IB degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells were pretreated with various doses of ALLnL for 30 min and then treated with LPS (1 µg/ml; lanes 2 to 5) for 15 min. Cells were processed, and IB was visualized. A slight mobility shift of IB associated with hyperphosphorylation in lanes 3 to 5 is shown by IB-P. (C) Lactacystin fails to block rapid IB degradation in WEHI231 cells. WEHI231 cells were pretreated with various doses of lactacystin for 30 min then treated with cycloheximide for 1.5 h followed by Western blot analysis of IB. (D) Lactacystin is capable of inhibiting LPS-inducible IB degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells were preincubated with various doses of lactacystin for 30 min and then stimulated with LPS (1 µg/ml) for 15 min, and the level of IB was determined. Lane 8 is loaded with half as many untreated WEHI231 cells as a migration control. Hyperphosphorylated IB (IB-P) is in lanes 4 to 7. (E) Pulse-chase of IB in untreated and lactacystin-treated WEHI231 cells. WEHI231 cells (8 × 106) were pulse-labeled with [35S]Met-Cys for 3.5 h, rinsed with excess growth medium, and incubated with either 0.1% DMSO or 100 µM lactacystin (final DMSO concentration, 0.1%) for various periods. OT was taken immediately after addition of DMSO or lactacystin. Cell samples were processed as described in Materials and Methods, and the resulting dry gel was exposed to X-ray films to visualize IB. Scanning with a PhosophorImager and quantification by ImageQuant show a slight overloading in lanes 5 and 6, but there was no difference of degradation between these two treatment groups. In addition, a proteolytic intermediate (asterisk) was observed in both the control and treated cells. A similar proteolytic intermediate was not seen during LPS-induced IB degradation (not shown).

S32/36 phosphorylation is not an absolute requirement for rapid IB proteolysis. Prior phosphorylation at S32/36 is an essential requirement for most signal-inducible IB degradation pathways (9, 10). This phosphorylation induces a characteristic mobility shift of the IB protein during polyacrylamide gel electrophoresis (Fig. 2B and D, IB-P). However, this mobility shift of IB was not observed in WEHI231 cells treated with proteasome inhibitors (Fig. 2A and C). To determine if S32/36 phosphorylation is an essential requirement for rapid IB proteolysis in WEHI231 cells, we examined the degradation of an HA epitope-tagged S32/36A IB mutant. This mutant contains alanines at positions 32 and 36. As a positive control, WT IB was also expressed in these cells. Both the WT and endogenous IB proteins are rapidly degraded in control cells (Fig. 3A, lanes 1 to 5). Therefore, the N-terminal HA epitope does not interfere with degradation. The S32/36A mutant and the endogenous IB protein are also rapidly degraded in a pool of cells stably expressing this mutant protein (Fig. 3A, lanes 6 to 10). Rapid proteolysis of the S32/36A mutant also occurs in nine independent stable clones that express various levels of the S32/36A mutant (Fig. 3B). These results are in sharp contrast to the absolute requirement of the S32/36 phosphorylation sites for LPS-inducible IB phosphorylation (Fig. 3C, lanes 3 and 6) and degradation (lanes 2 and 5) in pre-B cells. A mutant of IB with lysine-to-arginine changes at ubiquitination sites, positions 21 and 22 (K21/22R), also degrades efficiently in WEHI231 cells (not shown). Thus, these results demonstrate that rapid IB proteolysis can occur in the absence of S32/36 phosphorylation and K21/22 ubiquitination in WEHI231 cells.

View larger version (52K): [in this window] [in a new window]   FIG. 3.   S32/36 phosphorylation of IB is not required for rapid IB proteolysis in WEHI231 cells. (A) Both WT and S32/36A mutant IB degrade in WEHI231 cells. Pooled WT (lanes 1 to 5)- or S32/36A (lanes 6 to 10)-expressing WEHI231 cells were treated with cycloheximide and terminated at different time points. Exogenous IB proteins are shown by an open arrow, while the endogenous protein is shown by a filled arrow. An asterisk shows a possible proteolytic intermediate. (B) Degradation of the S32/36A mutant in stable clones. Nine independent clones of WEHI231 cells expressing the S32/36A mutant IB protein were analyzed for the ability to degrade the mutant IB protein as described above. The open arrow points to the S32/36A mutant, while the filled arrow points to the endogenous IB protein. An asterisk shows a possible proteolytic intermediate. (C) The endogenous and exogenous WT but not the exogenous S32/36A mutant IB undergo LPS-induced hyperphosphorylation and degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells expressing either WT (lanes 1 to 3) or S32/36A (lanes 4 to 6) were treated with LPS (lanes 2, 3, 5, and 6) without (lanes 2 and 5) or with ALLnL (lanes 3 and 6) (50 µg/ml). Cells were processed and blotted with anti-IB antibody as for Fig. 1A. The positions of exogenous (exo), endogenous (endo), phosphorylated exogenous (exo-p) and phosphorylated endogenous (endo-p) IB proteins are shown.

Constitutive p50-c-Rel activity is insensitive to proteasome inhibitors. Even though rapid IB proteolysis cannot be blocked by proteasome inhibitors in WEHI231 cells, constitutive p50-c-Rel activity may require a proteasome-dependent process. For example, proteasome-dependent degradation of other IB members, such as IB or IB, may be required (32, 39, 60). To directly examine this possibility, WEHI231 cells were treated with doses of ALLnL and lactacystin for times up to 3.5 h. Although these inhibitors have been shown to efficiently block signal-induced NF-B activation (58), EMSAs demonstrate that neither proteasome inhibitor is able to inhibit constitutive p50-c-Rel activity (Fig. 4A). The control experiments shown in Fig. 4B demonstrate that both proteasome inhibitors efficiently block LPS-inducible NF-B activation in a dose-dependent manner. Thus, like rapid IB proteolysis, constitutive p50-c-Rel activation is a proteasome-independent process in WEHI231 B cells.

View larger version (46K): [in this window] [in a new window]   FIG. 4.   Proteasome inhibitors fail to block constitutive p50-c-Rel activity in WEHI231 cells. (A) ALLnL and lactacystin fail to block constitutive p50-c-Rel activity in WEHI231 cells. WEHI231 cells were treated with various doses of ALLnL (lanes 3 to 5) and lactacystin (lanes 6 to 8) or with DMSO (0.2%) alone (lane 2) for 3 h. Nuclear extracts were analyzed by EMSA using the Ig B site (see Materials and Methods). Lane 1 contains untreated WEHI231 cells. The positions of p50-c-Rel, p50 homodimer, and free probe are shown on the left. (B) ALLnL and lactacystin efficiently block LPS-inducible NF-B activation in 70Z/3-CD14 cells. 70Z/3-CD14 cells were pretreated with inhibitors and concentrations as indicated for 30 min, followed by stimulation with LPS (1 µg/ml) for 15 min. Lane 1 contains untreated cells. The nuclear extracts were analyzed as described above. The positions of the inducible p50-p65 (RelA) complex and the free probe are shown on left.

IB is a target of at least two proteolytic processes in WEHI231 cells. The foregoing data demonstrate that rapid IB proteolysis and constitutive p50-c-Rel activity in WEHI231 cells are mechanistically distinct from known signal-inducible pathways. This may be due to the lack of the signal-inducible pathway or insufficient uptake of proteasome inhibitors. To directly address these possibilities, WEHI231 cells were stimulated with LPS in the presence and absence of proteasome inhibitors. Stimulation of WEHI231 cells with LPS induces modest IB degradation in 30 min (Fig. 5A; compare lanes 1, 4, and 6 to lanes 2, 5, and 7). Even though the rate of degradation induced by LPS is lower in this cell type than in pre-B cells (Fig. 2B and D), ALLnL can efficiently block this degradation. Additionally, ALLnL induces accumulation of the slower-migrating S32/36 phosphorylated IB protein (lane 3). Longer exposure shows the accumulation of a high-molecular-weight IB ladder, consistent with formation of multiubiquitinated IB proteins (Fig. 5B, lane 3). More pronounced effects of LPS-inducible degradation and proteasome inhibitors can be seen when WEHI231 cells are treated with cycloheximide to eliminate high-level IB synthesis (not shown). Finally, the S32/36A mutant is resistant to degradation by LPS stimulation (Fig. 5B, lanes 6 and 7) and remains associated with c-Rel (Fig. 5C, lanes 3 and 6). These results demonstrate that the LPS-inducible IB degradation processes in B (WEHI231) and pre-B (70Z/3-CD14) cells are indistinguishable and dependent on the S32/36 phosphorylation-dependent ubiquitin-proteasome pathway. Furthermore, the uptake of proteasome inhibitors is sufficient to block LPS-stimulated IB degradation in these cells. Thus, the results demonstrate that IB is targeted to at least two proteolytic systems, signal-inducible proteasome-dependent and constitutive proteasome-independent systems, in WEHI231 B cells.

View larger version (31K): [in this window] [in a new window]   FIG. 5.   Inducible IB degradation requires the S32/36 phosphorylation-dependent ubiquitin-proteasome pathway in WEHI231 cells. (A) IB degradation induced by LPS in control, WT, or S32/36 WEHI231 cells. WEHI231 cells were treated with LPS (10 µg/ml) for 30 min with (lane 3) and without (other lanes) 30-min pretreatment with ALLnL (50 µg/ml). Similar numbers of cells stably expressing either WT or S32/36A mutant IB were also stimulated with LPS as described above. Hyperphosphorylated IB (IB-P) is shown in lane 3. (B) Longer exposure of the blot in panel A. A high-molecular-weight ladder and a smaller antiserum-reactive band are seen in lane 3. WT IB is degraded (compare lanes 4 and 5, band labeled Exo.), while S32/36A is not (lanes 6 and 7). (C) Both exogenous and endogenous IB are complexed with c-Rel in WEHI231 cells. WEHI231 cells expressing WT (lanes 1 to 3) or S32/36A (lanes 4 to 6) were processed for coimmunoprecipitation as described in legend to Fig. 1D. The positions of exogenous (open arrow) and endogenous (filled arrow) proteins are shown on the left.

Calpain inhibitors and calcium chelators selectively block rapid IB proteolysis in WEHI231 cells. To further distinguish between constitutive and inducible IB degradation processes in WEHI231 cells, effects of various protease inhibitors were next examined. Our previous study (Fig. 2A) demonstrated that ALLnL, but not lactacystin, slightly inhibits IB turnover in unstimulated WEHI231 B cells. Since ALLnL can inhibit the activity of calpain, a calcium-dependent cysteine protease, other calpain inhibitors were also examined. The results shown in Fig. 6A (1.5-h treatment) and B (3.5-h treatment) demonstrate that ALLM can also slightly block basal IB turnover (lane 4). ALLnL and ALLM possess distinct potencies toward 26S proteasome activity (K_i of 0.67 and 28 µM for ALLnL and ALLM, respectively [42]), but they block the activity of calpain equivalently (K_i of 190 and 120 nM for ALLnL and ALLM, respectively [21]). Consequently, their similar effects on IB degradation suggest that this process may be calpain mediated. Other calpain inhibitors, such as calpeptin (50% inhibitory dose of 52 nM against calpain I) and a cysteine protease inhibitor, E64-d, are also effective at partially inhibiting IB proteolysis (Fig. 6A and B, lanes 5 and 6, respectively). Higher doses of ALLnL, ALLM, calpeptin, and E64-d are toxic to the cells and do not further inhibit IB turnover (not shown). Since calpains require calcium for their activity, we also examined the effects of BAPTA-AM, an intracellular calcium chelator, and EGTA, an extracellular calcium chelator (55). BAPTA-AM and EGTA show marked inhibitory activities both in the Western blot assay (Fig. 6A and B) and the pulse-chase assay (Fig. 6D and E). Equivalent doses of calpeptin, E64-d, EGTA, and BAPTA-AM do not affect LPS-stimulated IB degradation in 70A/3-CD14 cells (Fig. 6C, lanes 5, 6, and 10; results for EGTA not shown). Also, calpeptin, E64-d, and EGTA are incapable of blocking IB degradation induced by LPS and cycloheximide in WEHI231 cells (not shown). In contrast, the proteasome inhibitors ALLnL, ALLM, and ZLLF block LPS-induced degradation of IB, resulting in the accumulation of hyperphosphorylated forms in pre-B (Fig. 6C, lanes 3, 4, and 7) and WEHI231 cells (Fig. 5). A lysosomal inhibitor, NH₄Cl, is ineffective but TPCK is effective for inhibiting both processes (Fig. 6A and C, lanes 9 and 8, respectively) as reported previously (34, 35). NH₄Cl does not block calpain activity, but TPCK does (8). These results demonstrate that calcium chelators and some calpain inhibitors can selectively block high constitutive IB turnover.

View larger version (35K): [in this window] [in a new window]   FIG. 6.   Calpain inhibitors and calcium chelators block rapid IB proteolysis in WEHI231 cells. (A) Calpain inhibitors and calcium chelators block basal IB turnover in WEHI231 cells. WEHI231 cells were incubated with cycloheximide (Cx; 20 µg/ml) and the inhibitors for 1.5 h prior to Western blot analysis using IB antibody. The inhibitors used were ALLnL (50 µg/ml), ALLnM (50 µg/ml), calpeptin (10 µg/ml), E64-d (25 µg/ml), ZLLF (2 µg/ml), TPCK (12.5 µg/ml), NH4Cl (30 mM), BAPTA-AM (30µM), and DMSO (0.2%). Lanes 3 to 11 had same final DMSO concentrations. (B) Longer treatment of WEHI231 cells with inhibitors. WEHI231 cells were treated with various inhibitors plus cycloheximide for 3.5 h and analyzed as described above. The concentrations of inhibitors were the same as specified above. EGTA (lane 8) was at 2.5 mM (final concentration). (C) Calpain inhibitors and calcium chelators do not block LPS-inducible IB degradation in 70Z/3-CD14 cells. 70Z/3-CD14 cells were pretreated with inhibitors at concentrations as in panel A for 30 min and then treated with LPS (1 µg/ml) for 15 min. IB was visualized as described above, and the positions of IB (filled arrow) and hyperphosphorylated IB (open arrow) are shown on the left. Note the presence of IB-P in lanes 3, 4, and 7. A band seen above the IB protein is a nonspecific band. (D) Pulse-chase experiment of IB in WEHI231 cells treated with various inhibitors. WEHI231 cells were pulse-labeled for 2 h, rinsed with growth medium and incubated with 50 µg of ALLnL per ml (lanes 5 to 8) and 30 µM BAPTA-AM plus 1.25 mM EGTA (lanes 9 to 12) or untreated for 15 min. Samples were terminated immediately after addition of inhibitors (lanes 1, 5, and 9). At various time points thereafter, equivalent numbers of cells were terminated for each condition. The DMSO control (lane 13) was treated for a total of 3 h 15 min (equivalent to 3-h time points in other conditions). IB was immunoprecipitated and visualized as for Fig. 2E. (E) Quantification of IB bands in panel D. The dried gel was exposed to a PhosphorImager cassette, scanned with a PhosphorImager, and quantified by ImageQuant, and the values were plotted by using the OT values as 100% against time in hours.

Calcium chelators also block constitutive p50-c-Rel activity. We previously showed that TPCK blocks both rapid IB degradation and constitutive p50-c-Rel activity (34). If rapid IB proteolysis is involved in constitutive p50-c-Rel activation, inhibitors of rapid but not signal-inducible IB degradation should also block constitutive p50-c-Rel activity. Thus, we examined the effects of doses of calpeptin, E64-d, and BAPTA-AM with or without EGTA on the level of constitutive p50-c-Rel activity. BAPTA-AM is able to selectively reduce the level of nuclear p50-c-Rel DNA binding in a dose-dependent manner (Fig. 7A, lanes 2 to 6). This inhibitory effect of BAPTA-AM can be augmented by simultaneous addition of EGTA (lanes 8 to 12). EGTA can also inhibit this process alone (compare lanes 1 and 7). This inhibitory effect is not due to direct inhibition of the DNA binding activity, because BAPTA-AM with or without EGTA does not inhibit p50-c-Rel DNA binding activity when directly added to nuclear extracts isolated from untreated WEHI231 cells (Fig. 7B). This inhibitory effect is also not a result of NF-B nuclear transport blockage, because BAPTA-AM with or without EGTA did not block LPS-induced NF-B nuclear transport (Fig. 7C). The effects of BAPTA-AM and EGTA are not only dose dependent but also time dependent, because the level of constitutive p50-c-Rel activity is progressively reduced over the 3-h period examined (Fig. 7D, lanes 2 to 4 and 5 to 7, respectively). Similarly, calpeptin and E64-d can also selectively reduce the level of p50-c-Rel activity, although not as efficiently as BAPTA-AM and EGTA (not shown). These results demonstrate that inhibitors capable of blocking rapid IB proteolysis can also selectively block constitutive p50-c-Rel activity in murine B cells. Furthermore, there is a correlation between the degree of inhibition of IB degradation and p50-c-Rel activity in WEHI231 cells.

View larger version (62K): [in this window] [in a new window]   FIG. 7.   Calcium is essential for the maintenance of constitutive p50-c-Rel activity in WEHI231 cells. (A) EMSA of WEHI231 cells treated with BAPTA-AM with or without EGTA. WEHI231 cells were treated with various doses of BAPTA-AM without (lanes 2 to 6) or with (lanes 8 to 12) EGTA (2.5 mM). Lane 1, DMSO alone (0.2%); lane 7, DMSO plus EGTA; lane 13, without a nuclear extract. Position of the p50-c-Rel heterodimer is shown by the filled arrow, whereas a p50 homodimer is shown by an open arrow. (B) BAPTA-AM and EGTA do not directly block p50-c-Rel DNA binding activity. A nuclear extract prepared from untreated WEHI231 cells was incubated with doses of BAPTA-AM (lanes 2 to 4), EGTA (lane 5), or BAPTA-AM plus EGTA (lanes 6 to 8) for 40 min and analyzed by EMSA. An area of the gel with p50-c-Rel complex is shown (arrow). (C) BAPTA-AM and EGTA do not block LPS-induced p50-RelA binding activity in 70Z/3-CD14 cells. 70Z/3-CD14 cells were treated with doses of BAPTA-AM without (lanes 3 to 5) or with (lanes 7 to 9) EGTA or with EGTA alone (lane 6) and treated with LPS (1 µg/ml) for 15 min, and nuclear extracts were analyzed by EMSA. Lane 1, unstimulated cells; lane 2, DMSO- and LPS-treated cells. An area of the gel with p50-RelA complex is shown (arrow). (D) Time course of inhibition of p50-c-Rel binding in WEHI231 cells by BAPTA-AM and EGTA. WEHI231 cells were treated with either BAPTA-AM (30 µM; lanes 2 to 4) or EGTA (2.5 mM; lanes 5 to 7) for the indicated periods of time. Nuclear extracts were analyzed by EMSA as described above. Lane 1, untreated cells. The filled arrow points to p50-c-Rel, while the open arrow points to p50 homodimer. (E) Pulse-chase of cytoplasmic and nuclear c-Rel protein in WEHI231 cells. WEHI231 cells were pulse-labeled with [35S]Met-Cys for 3.5 h, washed with growth medium, and incubated in growth medium, and equal cell numbers were terminated at time points shown. The cells were then fractionated into cytoplasmic and nuclear pools, and each pool was immunoprecipitated with anti-c-Rel antibody. Cytoplasmic fractions used for immunoprecipitation were one-fourth the level of the nuclear fractions for each time point. The exposure time for nuclear and the cytoplasmic fractions was the same (3 days). Quantification by PhosphorImager demonstrated that the half-life of cytoplasmic c-Rel was >3 h, while that for nuclear c-Rel was 57 min.

Nuclear c-Rel is short-lived. IB is complexed with c-Rel in the cytoplasm (Fig. 1D) and undergoes rapid degradation. Since inhibition of IB degradation reduces nuclear p50-c-Rel DNA binding activity in a time-dependent manner (Fig. 7D), this process is associated with the maintenance of constitutive p50-c-Rel activity. Thus, continuous nuclear transport of cytoplasmic p50-c-Rel dimers may be required to maintain nuclear p50-c-Rel activity. If this model is correct, then the nuclear p50-c-Rel complex must have a relatively short half-life to account for the progressive loss of the nuclear DNA binding activity. To examine this possibility, the nuclear half-life of c-Rel protein was measured by pulse-chase experiments. The half-life of the cytoplasmic c-Rel was also measured as an internal control. The cytoplasmic c-Rel has a half-life of more than 3 h (Fig. 7E, lanes 1 to 4). In contrast, the half-life of nuclear c-Rel is only 57 min (lanes 5 to 8; data quantified with a PhosphorImager not shown). This short nuclear half-life correlates with the progressive loss of the p50-c-Rel DNA binding activity seen in Fig. 7D. Consequently, reduced DNA binding activity is likely due to reduced protein levels. Thus, these results suggest that a continuous nuclear transport of c-Rel complex is required to maintain nuclear p50-c-Rel DNA binding activity. They further suggest that p50-c-Rel nuclear transport is maintained by rapid proteolysis of associated IB in the cytoplasm.

Basal IB degradation is slow and proteasome dependent in WEHI231 cells. The results thus far are consistent with the hypothesis that rapid IB proteolysis in the cytoplasm maintains nuclear p50-c-Rel activity in WEHI231 B cells. If basal IB degradation is rapid in unstimulated B cells, it may also significantly contribute to constitutive p50-c-Rel activity. Accordingly, IB degradation has been suggested to regulate prolonged and constitutive NF-B activities (32, 54). To directly examine this possibility, the level of IB degradation and its proteasome dependence were examined in unstimulated WEHI231 cells. The pulse-chase experiment shown in Fig. 8A and quantification shown in 8B demonstrate that the half-life of IB was >3 h, much longer than that of IB (~40 min [Fig. 6E]). The different degradation levels of IB (rapid) and IB (slow) are not due to associated Rel/NF-B proteins, because most IB is also found complexed with c-Rel (Fig. 8C). To determine if the difference of degradation is due to the different protease systems, the effect of the proteasome-specific inhibitor lactacystin was examined. Figure 8D shows a Western blot analysis demonstrating that lactacystin can efficiently block basal IB degradation over a 3-h period (compare lanes 2 to 4 and 5 to 7). The dose response shown in Fig. 8E demonstrates that relatively low doses (15 to 20 µM) of lactacystin are sufficient to completely block basal IB degradation (lanes 5 and 6). These results demonstrate that both IB and IB are associated with c-Rel but basal IB degradation is proteasome dependent in WEHI231 cells whereas IB degradation is not.

View larger version (57K): [in this window] [in a new window]   FIG. 8.   IB is complexed with c-Rel and degraded slowly by the proteasome-dependent pathway in WEHI231 cells. (A) Pulse-chase of IB in WEHI231 cells. WEHI231 cells were pulse-labeled with [35S]Met-Cys for 3.5 h and chased with growth medium for the indicated periods. The labeled IB protein was immunoprecipitated with anti-IB antibody in the presence of various protease inhibitors and phosphatase inhibitors as described in Materials and Methods. The position of IB is shown by the arrow, and the molecular weight markers are shown on the right. (B) Quantification of IB by PhosphorImager. The gel in panel A was exposed to a PhosphorImager, and IB bands were quantified. The value at the start of the chase (OT) was used as 100%, and the fractions remaining were plotted against time. The half-life was slightly greater than 3 h. (C) IB is associated with c-Rel in WEHI231 cells. Coimmunoprecipitation and Western blotting were performed as for Fig. 1D. The blots were first incubated with HRP-protein A in the presence of sodium azide to saturate the Igµ reactivity. Sodium azide inactivated the HRP activity of HRP-protein A bound to the Igµ heavy chain. The blot was then washed extensively, incubated with anti-IB antibody, rinsed, incubated with HRP-protein A without sodium azide, and developed by ECL. No Igµ chain is visible in the blot shown. The arrow points to the IB band. (D) Time course of lactacystin-mediated inhibition of basal IB degradation in WEHI231 cells. WEHI231 cells were treated with cycloheximide (20 µg/ml) and lactacystin (25 µM) for the indicated periods of time, and the IB was detected by Western blotting and ECL reaction using HRP-conjugated goat anti-rabbit antibody. (E) Dose response of lactacystin-mediated inhibition of basal IB degradation in WEHI231 cells. WEHI231 cells were treated with cycloheximide (Cx; 20 µg/ml) and lactacystin at doses shown for 3 h, and IB was detected as described above.

IB is basally phosphorylated and cytoplasmic in WEHI231 cells. Prolonged activation of NF-B has been suggested to involve production of hypophosphorylated IB which shields NF-B from IB proteins and allows nuclear transport of NF-B (52). To examine if such hypophosphorylated nuclear IB is constitutively expressed in WEHI231 cells, we compared the forms (slower-migrating phosphorylated versus faster-migrating hypophosphorylated) and subcellular localization (nuclear versus cytoplasmic) of IB in unstimulated WEHI231 B cells. 70Z/3-CD14 pre-B cells were also analyzed as a control. There is no difference in level and form of IB in these two cell types (Fig. 9A), suggesting that hypophosphorylated IB is not present at augmented level in WEHI231 cells. The absence of mobility difference between IB in these cell types is not technical, because the faster-migrating hypophosphorylated IB protein can be detected when pre-B cells are stimulated with LPS for prolonged periods (Fig. 9B). Furthermore, IB is mostly cytoplasmic in unstimulated WEHI231 cells (Fig. 9C, lanes 7, 9, and 11) as in 70Z/3-CD14 cells (lanes 1, 3, and 5), further arguing against the presence of significant level of constitutively nuclear hypophosphorylated IB protein. In contrast, two nuclear proteins, Sp-1 and lamin B, are seen only in the nuclear fractions, demonstrating that the cytoplasmic/nuclear fractionation is complete in these experiments. These results together with the results shown in Fig. 8 suggest that IB is not a regulator of constitutive p50-c-Rel activity in WEHI231 immature B cells.

View larger version (50K): [in this window] [in a new window]   FIG. 9.   Level, migration pattern, and subcellular localization of IB are the same in WEHI231 cells as in 70Z/3-CD14 cells. (A) Steady-state level of IB in WEHI231 and 70Z/3-CD14 cells. The Western blot shown in Fig. 1C was also probed with anti-IB antibody to examine the relative level of IB protein (arrow). Samples were as in Fig. 1C. (B) Hypophosphorylated IB produced following prolonged stimulation of 70Z/3-CD14 with LPS. 70Z/3-CD14 cells were treated with LPS (1 µg/ml) for up to 8 h. Equal fractions of cells were terminated at each time point and analyzed by Western blotting using anti-IB antibody. The filled arrow shows basally phosphorylated IB, while the open arrow points to newly synthesized hypophosphorylated IB (lanes 4 to 6). (C) IB is cytoplasmic in both WEHI231 and 70Z/3-CD14 cells. Three sets of 70Z/3-CD14 and WEHI231 cells were fractionated into cytoplasmic (C) and nuclear (N) fractions independently as described in Materials and Methods. The resulting fractions were analyzed by Western blotting using anti-IB antibody. (D) Sp-1 and lamin B are nuclear. The blot in panel C was reprobed with antibodies against nuclear proteins Sp-1 (open arrow) and lamin B (closed arrow). The bands were visualized with HRP-conjugated anti-mouse antibody followed by ECL reaction. An asterisk points to an unknown protein which is exclusively localized in the cytoplasmic fraction.

	DISCUSSION

Top Abstract Introduction Materials & Methods Results Discussion References

In this study, we present several lines of evidence for a novel IB degradation process that coexists with the well-characterized S32/36 phosphorylation-K21/22 ubiquitination-proteasome pathway (Fig. 10A). We suggest a model (Fig. 10B) in which continuous nuclear transport of p50-c-Rel dimer is induced by a high-level basal degradation of associated IB protein. This continuous nuclear transport counterbalances the short half-life of nuclear c-Rel complex in WEHI231 cells. The constitutive p50-c-Rel presumably activates transcription of genes encoding IB, c-Rel, and p50 to replace the degraded pool for the maintenance of this dynamic cycle. We further suggest that rapid IB proteolysis requires free calcium, likely imported from outside the cell.

View larger version (42K): [in this window] [in a new window]   FIG. 10.   Signal-inducible and constitutive Rel/NF-B activation pathways in murine B cells. (A) A signal-inducible NF-B activation pathway in 70Z/3-CD14 pre-B cells. The NF-B activation pathway induced by extracellular stimuli involves activation of a specific IB kinase resulting in site-specific phosphorylation at serine residues 32 and 36. This phosphorylation event signals the multiubiquitination event primarily at lysine residues 21 and 22 by a ubiquitin-conjugating enzyme system, E1-E2-E3 (14). Finally, the multiubiquitinated IB protein while still complexed with NF-B is then selectively and extensively degraded by the 26S proteasome complex. The liberated NF-B migrates into the nucleus and regulates target genes, including that of IB. If an activating signal is terminated or downregulated, the newly synthesized IB will terminate the NF-B activity, resulting in transient NF-B activation. Extracellular signals can also induce degradation of IB, resulting in prolonged NF-B activation. (B) Constitutive p50/c-Rel activation pathway in WEHI231 cells. This pathway is a novel Rel/NF-B activation pathway which is distinct from the conventional signal-inducible pathway shown in panel A. This constitutive pathway does not require the S32/36 phosphorylation or the ubiquitin-proteasome pathway. It likely depends on high-level constitutive IB degradation. This degradation requires free calcium, likely maintained by continuous influx through a calcium channel. Continuous IB degradation allows continuous nuclear transport of p50-c-Rel complex, which has a relatively short half-life of only 1 h in the nucleus. p50-c-Rel then activates the transcription of genes encoding IB, c-Rel, and p50/p105 to replenish the degrading pools.

IB is a target of two distinct proteases, constitutive proteasome-independent protease and the signal-induci