INTRODUCTION

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NF-B/Rel proteins comprise a family of inducible transcription factors which control the expression of numerous genes involved in the immune, inflammatory, and acute-phase responses (for reviews, see references 3, 5, and 18). There is increasing evidence that members of this family are also involved in the regulation of normal and malignant cellular growth, especially in hematopoietic cells (16). More recently, it was demonstrated that inhibition of NF-B/Rel induces apoptosis in various cell types, suggesting an antiapoptotic potential of NF-B/Rel proteins (6, 36, 56, 60, 62).

In higher vertebrates, the NF-B/Rel family encompasses five different genes: those encoding NF-B1 (p105/p50), NF-B2 (p100/p52), RelA (p65), and RelB, and the proto-oncogene encoding c-Rel. To a limited extent, these proteins can form homo- and heterodimers with distinct DNA-binding specificity (39, 43, 49). In most cell types, NF-B/Rel dimers are sequestered in the cytoplasm by a member of the IB family of inhibitory proteins. IB proteins mask the nuclear localization signal of NF-B/Rel, thereby preventing the nuclear translocation of NF-B/Rel. Upon stimulation, IB proteins are phosphorylated on specific serine residues, ubiquitinated, and degraded through proteasome-dependent proteolysis, thereby allowing NF-B/Rel dimers to translocate into the nucleus and bind to their cognant DNA sequences (for reviews, see references 4, 5, 54, and 57).

This initial activation of NF-B can occur without de novo protein synthesis. However, it was shown that maintenance of NF-B activity requires ongoing protein synthesis and continuous stimulation, indicating that NF-B/Rel is also regulated at a transcriptional or translational level (23).

In a previous study, we demonstrated that NF-B2 is positively autoregulated via two B-responsive elements (34), as shown for other family members, including NF-B1 (53) and IB (28). In addition, mutation of the B elements resulted in a dramatic increase in the basal NF-B2 promoter activity in various cell lines. Therefore, we postulated that there is a negative regulation of NF-B2 transcription mediated by the B elements. A putative repressive DNA binding activity, Rep-B, which interacts with a B motif in the NF-B2 promoter was identified. Rep-B binding activity was partially purified from different cell sources, indicating that its expression is ubiquitous (34).

Recombination signal binding protein J (RBP-J), also designated KBF2 or CBF1, was originally purified based on its binding to the recombination signal of the J immunoglobulin gene (38). Subsequently it was demonstrated that RBP-J acts as a transcriptional regulator, via binding to specific DNA motifs, rather than as a recombinase in V(D)J rearrangement (55). RBP-J proteins have been highly conserved during evolution not only in vertebrates but also in invertebrates. Genetic analysis revealed that the gene encoding RBP-J is conserved as the Drosophila melanogaster suppressor of hairless [SuH)], a member of the neurogenic gene family including Notch, Delta, Enhancer of split [E(spl)], and Hairless (15, 50). These genes participate in a lateral inhibition mechanism whereby singled-out sensory mother cells prevent their neighbors from adopting the neuronal fate (2). The first evidence that RBP-J acts as a transcription factor came from studies on viral gene expression. A cellular protein with 97% identity to a RBP-J splice variant (RBP-2N), which binds specifically to a 10-bp motif in the promoter region of the adenovirus capsid protein pIX, was purified. Transcriptional repression of the pIX promoter by RBP-2N was shown in in vitro as well as in vivo experiments (11). A transcriptional repression domain within RBP-J which might directly interact with the basal transcription machinery has been identified (24). Alternatively, this domain might function as a binding interface for an as-yet-unidentified corepressor protein (58).

RBP-J-mediated repression is overcome by interaction with the Epstein-Barr virus activator protein EBNA2. EBNA2 by itself is not able to bind DNA but is targeted to its DNA-responsive elements by direct physical interaction with RBP-J, thereby masking the RBP-J repression domain and acting as a strong transcriptional activator (19, 22, 24, 59, 64).

The gene encoding RBP-J/Su(H) is genetically mapped downstream of the Notch receptor in a signaling cascade controlling cell fate decisions during Drosophila development (14). One current model of Notch signaling postulates that after ligand binding the Notch receptor is activated by a proteolytic cleavage step. This activated form of Notch, Notch-IC, exerts its function by targeting DNA-bound RBP-J/Su(H), thereby masking the repression domain of RBP-J and activating transcription (25). In mammals, Notch homologs are implicated in neurogenesis and myogenesis (41), granulocyte differentiation (40), and CD4 versus CD8 as well as versus lineage decisions during T-lymphocyte development (45, 61). Direct physical interaction between activated forms of the murine Notch-1 receptor and RBP-J have been demonstrated (26, 29, 52), making this signal transduction cascade an exceptional short and simple communication strategy between the cell surface and the nucleus. So far, the only known Notch-1 target gene in mammals is the hairy enhancer of split (HES-1) gene, which encodes a basic helix-loop-helix protein that is able to block MyoD-induced myogenesis (32).

Here we demonstrate, on the basis of its DNA binding requirements, its gel mobility shift pattern, and its recognition by a specific antibody, that Rep-B is closely related or identical to RBP-J. Rep-B binds specifically to an 8-bp DNA motif in the NF-B2 promoter with a high degree of similarity to the RBP-J consensus sequence (55). This RBP-J binding site overlaps the 5'-half site of a functional B element. In transient-transfection assays, we show that RBP-J strongly inhibits basal as well as RelA (p65)-induced NF-B2 promoter activity. These data show that RBP-J behaves biochemically and functionally identically to the previous proposed Rep-B as a repressor of NF-B2 transcription. In addition, we show in transient-transfection assays that truncated Notch-1 overcomes RBP-J-mediated repression and strongly activates NF-B2 transcription through the RBP-J binding site.

	MATERIALS AND METHODS

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Plasmids. A 1.9-kb BamHI-XhoI fragment of the mouse RBP-J gene, kindly provided by Tasuku Honjo (Kyoto, Japan), was isolated and used to screen a cDNA library derived from HeLa cells (Stratagene). Screening was performed as described previously (35). Two independent cDNA clones with 1.8- and 1.5-kb insert sizes were isolated, subcloned into the EcoRI and XhoI sites of Bluescript SK(+) (Stratagene), and sequenced. Both clones represent 3' fragments of the RBP-J cDNA truncated in exon 2. To generate a full-length cDNA of RBP-2N, the missing 5' sequence was introduced by PCR, using BamHI and NdeI restriction sites. Using BamHI and XhoI, the full-length cDNA of RBP-2N was cloned into the pcDNA3 vector (Invitrogen), resulting in pCMV-RBP-2N. To generate an RBP-1 expression plasmid, a PCR fragment representing the 5' end of the RBP-1 gene, designated aPCR1 (1), was digested with ClaI, treated with the Klenow fragment of DNA polymerase, and digested with SphI to generate a fragment which was ligated to SpeI-digested RBP-2N DNA, blunted, and digested with SphI. The full-length RBP-1 gene was subcloned into the NotI and XhoI sites of pcDNA3. In addition, we searched a database of sequencing tags and identified a sequence identical to that of the full-length RBP-3 gene (GenBank accession no. Z36843). The plasmid was kindly provided by T. Gress (Ulm, Germany). The insert was cut out and cloned into the BamHI and NotI sites of Bluescript SK(+) and pcDNA3, resulting in pCMV-RBP-3. The identities of PCR fragments and cloning junctions were confirmed by sequencing.

Cell lines. The cell lines HEK-293 (ATCC CRL 1573) and COS-7 (DSM ACC 60) were grown at 37°C under 5% CO₂ in Dulbecco's modified Eagle's medium (Gibco) supplemented with 10% fetal calf serum (FCS). Jurkat T cells (ATCC TIB 152) were cultivated at 37°C under 5% CO₂ in RPMI 1640 medium (Gibco) supplemented with 5% FCS.

Preparation of cell extracts. Nuclear extracts were prepared as described elsewhere (34). Whole-cell lysates were prepared as follows. Cells were washed three times in phosphate-buffered saline (PBS) and pelleted by centrifugation at 300 × g. The pellet was resuspended in 5 volumes of ice-cold CHAPS lysis buffer, consisting of 10 mM 3-[(cholamidopropyl)-dimethylammonio]-1-propanesulfonate (CHAPS), 50 mM Tris-HCl (pH 7.9), 150 mM NaCl, 2 mM EDTA, 5 mM NaF, 10 µg of aprotinin per ml, 10 µg of leupeptin per ml, 1 mM dithiothreitol (DTT), and 0.5 mM phenylmethylsulfonyl fluoride; this was followed by incubation on ice for 40 min. The lysate was cleared by centrifugation at 80,000 × g for 30 min. Protein concentrations were determined by the Bradford method (Bio-Rad), and extracts were assayed for DNA binding activity by electromobility gel shift assays (EMSAs) and Western blotting.

Translation of recombinant proteins. In vitro-translated proteins were synthesized in a reticulocyte lysate-coupled transcription-translation system in accordance with the manufacturer's instructions (Promega). The quality of translation was monitored by simultaneously labeling with [³⁵S]methionine. After separation of the labeled translation products by sodium dodecyl sulfate (SDS) gel electrophoresis, the gels were dried and exposed to X-ray film.

Protein purification and in vitro interaction assay. Purification of Rep-B was performed essentially as described previously (34). Nuclear extracts from unstimulated Jurkat-T cells were applied to DNA-cellulose columns equilibrated at 100 mM NaCl. After several washing steps, protein fractions were eluted with increasing NaCl concentrations and analyzed by EMSA. Purification of a bacterially expressed glutathione S-transferase (GST)-Notch-1-IC fusion protein and in vitro interaction assays were performed as described in references 8 and 29.

EMSAs. Approximately 5 to 10 µg of cell extract was used for EMSAs in a binding buffer consisting of 10 mM Tris-HCl (pH 7.5), 100 mM NaCl, 0.1 mM EDTA, 0.5 mM DTT, and 4% glycerol. For binding reactions, 2 µg of poly(dI-dC) (Pharmacia) and approximately 0.5 ng of ³²P-labeled oligonucleotides were added. For competition experiments, a 10- to 60-fold molar excess of unlabeled competitor was used. For antibody perturbation experiments, 0.5 µg of antibody directed against RBP-J (K0043) (21, 46), 10 µg of antibody directed against RelA (p65) (SC109X; Santa Cruz Biotechnology), or 10 µg of antibody directed against the FLAG epitope (M-5; Kodak) was added to the reaction mixture. The reaction products were separated on 5% polyacrylamide gels with 1× Tris-glycine-EDTA at room temperature. The gels were dried and exposed to X-ray film.

Oligonucleotides. The sequences of the oligodeoxynucleotides SL350 and SL366 are as follows. SL350, 5'-CTAGTAACGTCATGGGAATTCCCCCCTCCGGGGGGCCGAGAAGGGGCTTTCCCGGCCCT-3', corresponds to positions 119 to 64 of the human NF-B2 gene and contains two NF-B binding sites (34). SL366, 5'-GATCGTTACTGTGGGAAAGAAAGTTTGGGAAGTTTCACAC-3', spans positions 91 to 47 of the murine HES-1 promoter and contains two RBP-J binding sites. SL49, 5'-GCACGGAAACGTGAGGGGAATTCCCCC-3', was used for site-directed mutagenesis to introduce a mutation into the RBP-J consensus sequence in the reporter construct pASwt to generate pAS-SL49. The sense strand of each oligonucleotide is shown. Sequences of other oligodeoxynucleotides are shown in the respective figures.

DNA transfection and luciferase assay. A total of 10⁶ HEK-293 cells were transfected in 90-mm-diameter culture dishes with 5 to 10 µg of plasmid DNA expressing RBP-J splice forms and murine Notch-1-IC by calcium phosphate coprecipitation, as described previously (48). Forty-eight hours after transfection, nuclear proteins were prepared and the extracts were assayed for DNA binding activity and protein expression. COS-7 cells were transfected with DEAE-dextran essentially as described previously (49). Cells (2 × 10⁵) in 35-mm-diameter culture dishes were transfected with 2 µg of reporter plasmid DNA together with various amounts of plasmid expressing RelA (p65), RBP-2N, RBP-3, or murine Notch-1-IC. Transfection of Jurkat-T cells was performed as follows. Cells (10⁷) were electroporated in a total volume of 300 µl of RPMI 1640 medium supplemented with 5% FCS. Electroporations were performed with a Gene Pulser II apparatus (Bio-Rad) at 260 V and 975 µF in 40-mm electroporation cuvettes. To quantitate luciferase activity, cells were harvested 48 h after transfection and lysed in 100 µl of a buffer containing 25 mM Tris-HCl (pH 7.8), 2 mM EDTA, 2 mM DTT, 10% glycerol, and 1% Triton X-100 for 10 min at room temperature. Lysates were centrifuged at 7,000 × g for 5 min. Luciferase activity of at least four independent transfections with 20 µl of cleared lysate was determined in an LB 9501 luminometer (Berthold), using a luciferase assay system (Promega). All transfections were normalized for the level of total cellular protein (Bradford assay; Bio-Rad).

Western blotting. SDS-polyacrylamide gels (7.5%) were transferred to a nitrocellulose filter (BA85; Schleicher & Schuell) for 20 min at 4°C and 150 mA, using a Tris-glycine buffer system. The membrane was blocked for 2 to 3 h in a solution of 5% dry milk powder in PBS-T (0.05% Tween 20 in PBS), incubated with the primary antibody directed against the FLAG epitope (M-5; Kodak) for 1 to 2 h in PBS-T containing 5% dry milk powder, and then washed three times in PBS-T (10 min each). The secondary antibody (1:7,000 dilution of peroxidase-conjugated sheep anti-mouse immunoglobulin G (IgG; Sigma) was incubated with the membrane for 30 min. After the membrane was washed, specific proteins were detected by using an enhanced chemiluminescence system (Amersham).

	RESULTS

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Purification of Rep-B DNA binding activity. Previously, we had shown that two B elements within the human NF-B2 promoter are critical for responsiveness of NF-B2 to tumor necrosis factor alpha (TNF-) and phorbol myristate acetate. Interestingly, mutation of the B elements led to a strong induction of basal promoter activity in unstimulated cells. Therefore, we postulated that there is a B element DNA binding activity which mediates transcriptional repression of the NF-B2 gene in the absence of NF-B. A nuclear complex, which we named Rep-B, likely to be responsible for this transcriptional repression could be identified. To further characterize this putative repressive DNA binding activity, we partially purified protein complexes from nuclear extracts of unstimulated Jurkat-T cells, using DNA-cellulose columns. Proteins were eluted with increasing NaCl concentrations. DNA binding activity in the eluted fractions was monitored by EMSA using the ³²P-labeled oligonucleotide SL350, which contains both B sites (positions 119 to 63) of the NF-B2 promoter. The specificity of DNA binding was tested by competition with increasing amounts of unlabeled oligonucleotide SL350 (Fig. 1A, lanes 3 and 4). Two major complexes, A and B, turned out to bind specifically to the NF-B2 probe. On the basis of previous experiments, we identified complex A as Rep-B activity. Rep-B was eluted at 280 to 320 mM NaCl (Fig. 1A, fractions 10 to 13). Further characterizations of Rep-B were performed with fractions 11 and 12. 

View larger version (101K): [in this window] [in a new window]   View larger version (20K): [in this window] [in a new window]   View larger version (92K): [in this window] [in a new window]   View larger version (80K): [in this window] [in a new window]   FIG. 1.   (A) Purification of Rep-B activity from Jurkat-T cells. Nuclear extracts (NE), flowthrough (Flow), and eluted fractions were tested for binding to the oligonucleotide SL350, which contains both B elements in the human NF-B2 promoter and flanking regions (positions 119 to 63). The specificity of binding was analyzed by adding 20- and 60-fold molar excesses of a homologous competitor (lanes 3 and 4). A and B indicate the positions of specific DNA binding complexes. Complex A was identified as Rep-B activity. (B) Sequence requirements for Rep-B binding. Competition experiments were performed with eluted fraction 11 (5 µl) and 20- to 60-fold molar excesses of the unlabeled competitor (Comp.) oligonucleotides shown in panel C. As a probe, the 32P-labeled oligonucleotide SL350 was used. , no competitor added. (C) Sequences and Rep-B binding abilities of different oligonucleotides derived from the first B element in the NF-B2 promoter. Only the positive strand of each oligonucleotide is shown. Lowercase letters represent added linker sequences; dashes indicate identity with the consensus (Consens.) sequence. (D) Rep-B activity is recognized by an antibody directed against RBP-J. Treatment of eluted fractions 11 and 12 (5 µl) with an RBP-J-specific antibody (-RBP) specifically abolished band A. Instead, a more slowly migrating complex (band C, lanes 2 and 4) appeared. Another DNA binding activity (complex B) was not affected by the antibody. The probe was a 32P-labeled oligonucleotide, SL332, containing the first B element (positions 119 to 90) within the NF-B2 promoter. , control (antibody not added). (E) Rep-B binds specifically to the RBP-J site in the murine HES-1 promoter. Nuclear extracts and eluted fractions from Jurkat-T cells were analyzed for specific DNA binding activity, using the 32P labeled oligonucleotide HES-1 as a probe. This oligonucleotide contains the known RBP-J consensus sequence 5'-CTGTGGGAAAGA-3'. As a competitor, a 50-fold molar excess of unlabeled oligonucleotide SL332 (lane 2) or HES-1 (lane 3) was used. Band A represents Rep-B binding activity. , control (competitor not added).

Sequence requirements for Rep-B binding. To determine the DNA binding properties of Rep-B in more detail, we carried out competition experiments with eluted fraction 11 and the ³²P-labeled oligonucleotide SL350 as a probe (Fig. 1B). For competition, the oligonucleotides shown in Fig. 1C were used at a 20- or 60-fold molar excess. The oligonucleotide SL332 represents the first B element (positions 119 to 90) in the human NF-B2 promoter (see also Fig. 3). Since the labeled probe contains both B elements, the competition experiment with SL332 (Fig. 1B, lanes 2 and 3) suggests that the first B element is the major target site for Rep-B binding. Therefore, we introduced various nucleotide changes in the flanking region or within the B element and used the double-stranded oligonucleotides shown in Fig. 1C as competitors. As shown in Fig. 1B, excesses of oligonucleotides SL336, SL338, SL340 and SL342 did not titrate out Rep-B binding. However, the competitors SL346 and SL348 were still able to bind Rep-B activity. Interestingly, we identified a binding consensus element (5'-CATGGGAA-3' [Fig. 1C]) with obvious similarity to that of RBP-J (5'-CGTGGGAA-3'), the mammalian homolog of Drosophila melanogaster suppressor of hairless (54). Indeed, oligonucleotide SL344, containing the ideal RBP-J consensus sequence (Fig. 1C), did compete for Rep-B binding (Fig. 1B, lanes 16 and 17). These experiments clearly demonstrate that the 5'-half site of the first B element in the NF-B2 promoter, rather than the whole B element, is necessary for Rep-B binding. In addition, the sequence requirements for Rep-B DNA interaction are almost identical to those of RBP-J.

Rep-B is most likely identical to RBP-J. Additional evidence that Rep-B is closely related to RBP-J was obtained from gel shift analyses performed in the presence of an RBP-J-specific antibody (Fig. 1D). Eluted fractions 11 (lanes 1 and 2) and 12 (lanes 3 and 4) were incubated with or without the monoclonal rat antibody K0043 (21, 46) prior to gel shift analysis. The presence of the antibody led to the disappearance of complex A in both fractions and to the appearance of a supershifted, novel band. This complex (band C) most likely contains RBP-J. Furthermore, we performed a band shift experiment with crude nuclear extracts from Jurkat-T cells and eluted fractions 9 to 15. As a probe for DNA binding, we used a ³²P-labeled oligonucleotide derived from the murine HES-1 promoter. This promoter sequence contains a perfect RBP-J consensus sequence, 5'-CTGTGGGAAAGA-3' (positions 82 to 71), without an overlapping B element (8). As shown in Fig. 1E, complex A from Jurkat-T cell nuclear extracts binds specifically to the RBP-J site of the HES-1 promoter (lane 1). Competition for this binding activity was provided by a 50-fold molar excess of unlabeled oligonucleotide SL332 (lane 2) as well as by a 50-fold molar excess of the homologous competitor HES-1 (lane 3). Furthermore, the DNA binding activity associated with the HES-1 site in the eluted fractions corresponds exactly to the NF-B2-specific Rep-B activity shown in Fig. 1A, suggesting that Rep-B is identical to RBP-J.

View larger version (77K): [in this window] [in a new window]   FIG. 2.   The RBP-J splice variants RBP-2N, RBP-1, and RBP-3 bind specifically to the first B element in the NF-B2 promoter. Eluted fraction 12 (5 µl) and RBP-J splice variants synthesized in a cell-free system were incubated with (+) or without () an antibody directed against RBP-J (-RBP) prior to gel electrophoresis. Treatment of lysates with the antibody specifically abolished complex A (lanes 2, 6, 8, and 10). This complex was absent from the lysate in which a control plasmid [Bluescript SK(+) (BS)] was used in the translation assay (lane 4). The added reticulocyte lysate (5 µl) contained NF-B binding activity (complex B) which covered the supershifted antibody-RBP complex (band C) detected in lane 2. The 32P-labeled oligonucleotide SL332, containing the first B element of the NF-B2 promoter, was used as a probe.

The human NF-B2 promoter is repressed by RBP-2N. Previously, the human RBP-J splice form RBP-2N was shown to act as a transcriptional repressor of adenovirus pIX gene expression via sequence-specific DNA binding (11). To test the regulation of the human NF-B2 gene in response to RBP-J, NF-B2-specific luciferase constructs were transiently cotransfected with plasmids expressing RBP-2N, under the control of the cytomegalovirus (CMV) promoter, into COS-7 or Jurkat-T cells. As shown in Fig. 3, the reporter construct pASwt contains NF-B2-specific promoter sequences (positions 198 to +165), including both B elements. The first B element overlaps the putative RBP-J consensus site, 5'-CATGGGAA-3'. In pAS-SL49, this site has been mutated to 5'-GAGGGGAA-3' without affecting the functional B element. Coexpression of increasing amounts of RBP-2N into COS-7 cells resulted in a 70% repression of the basal luciferase activity of pASwt. No significant effect was observed with the reporter construct pAS-SL49, which contains a mutated RBP-J site (Fig. 4A).

View larger version (12K): [in this window] [in a new window]   FIG. 3.   Schematic representation of the luciferase (LUC) reporter constructs used for transfection assays. The constructs pASwt and pAS-SL49 contain a DNA fragment (positions 198 to +165) derived from the human NF-B2 promoter. The sequences of the B elements (black boxes) and the overlapping putative RBP-J elements (open boxes) are shown. In the construct pAS-SL49, the putative RBP-J consensus element is mutated as indicated. Abbreviations: A, AvaI; E, EcoRI; N, NruI; Pv, PvuI; S, SalI.

View larger version (23K): [in this window] [in a new window]   FIG. 4.   Repression of basal as well as RelA (p65)-stimulated NF-B2 promoter activity by RBP-2N depends on a functional RBP-J consensus sequence. (A) Portions (2 µg) of reporter constructs pASwt (black bars) and pAS-SL49 (open bars) were cotransfected into COS-7 cells with increasing amounts of an RBP-2N expression plasmid. (B and C) Portions (2 µg) of reporter constructs pASwt (black bars) and pAS-SL49 (open bars) were cotransfected with 500 ng of pRSVRelA and increasing amounts of CMV-RBP-2N into COS-7 cells (B) or Jurkat-T cells (C). Luciferase activity was determined from 100 µg of total cell extract, and the basal promoter activity of each construct was set to one. Mean values and standard deviations for at least four independent experiments are shown.

Rep-B/RBP-J and NF-B/Rel (p50/p65) compete for binding to the first B element within the NF-B2 promoter. To investigate the binding of NF-B/Rel complexes and Rep-B/RBP-J to their overlapping sites in more detail, we first performed a semiquantitative binding analysis for Rep-B/RBP-J and NF-B/Rel (p50/p65) by the method of Scatchard (12). Fraction 12, containing partially purified Rep-B protein (Fig. 1A, lane 14), was used as the source of Rep-B/RBP-J DNA binding activity, and cell-free system-cotranslated p50/p65 heterodimers were used to determine NF-B/Rel-specific affinity for the first B site. Figure 5A shows a graph of the binding of the NF-B/Rel (p50/p65) heterodimers to the labeled oligonucleotide SL332, with saturation for values exceeding 1 nM free probe. For Rep-B/RBP-J, no saturation could be obtained with a probe concentration of 2 nM. Although we could not precisely determine the binding affinity of Rep-B/RBP-J for the NF-B2-specific oligonucleotide, this experiment shows that the affinity of NF-B/Rel (p50/p65) for the B element is at least sixfold higher than that of Rep-B/RBP-J (Fig. 5A). To investigate whether NF-B/Rel proteins and Rep-B/RBP-J could bind to their overlapping sites simultaneously, we carried out band shift experiments; the results are shown in Fig. 5B. Fraction 12 was incubated with increasing amounts of cell-free system-synthesized p50/p65 heterodimers and constant amounts of ³²P-labeled oligodeoxynucleotide SL332, resulting in the subsequent appearance of the NF-B-specific complex B (Fig. 5B, lanes 3 to 5). The specificity of this complex was tested by treatment with antiserum directed against RelA (p65), which induced a supershifted novel band, band F (Fig. 5B, lane 6). Interestingly, augmenting NF-B/Rel (p50/p65)-specific DNA binding activity (complex B) was associated with a gradual loss of Rep-B/RBP-J-specific DNA binding (complex A), suggesting that NF-B/Rel and Rep-B/RBP-J compete for binding to overlapping sites within the NF-B2 promoter.

View larger version (20K): [in this window] [in a new window]   FIG. 5.   (A) Affinity of Rep-B/RBP-J and NF-B/Rel (p50/p65) for the first B element and the overlapping RBP-J site within the NF-B2 promoter, evaluated by Scatchard analysis. Protein-DNA binding studies were performed with a range of concentrations of labeled oligonucleotide SL332 in a 20-µl reaction volume. Bound and free probe species were quantitated with a PhosphorImager (Molecular Dynamics). Reactions were performed in triplicate. (B) Competitive binding of NF-B/Rel (complex B) and Rep-B/RBP-J (complex A). The band shift experiment was performed with fraction 12 of partially purified nuclear extracts from Jurkat-T cells and increasing amounts of cell-free cotranslated NF-B/Rel (p50/p65) heterodimers. Band F represents a RelA (p65)-containing complex which was supershifted after treatment with antiserum (-p65). Radiolabeled oligonucleotide SL332 was used as a probe. , control (no NF-B/Rel added).

Activated mammalian Notch-1 interacts with Rep-B/RBP-J. Truncated Notch-1 was shown to activate transcription mediated by physical interaction with RBP-J, thereby masking the repressive effect of RBP-J (25). In mammals, this was demonstrated with the murine HES-1 promoter (29). To investigate whether activated Notch-1 is also involved in the transcriptional regulation of NF-B2, we first performed band shift experiments (Fig. 6). Nuclear extracts from Jurkat-T cells were incubated with and without increasing amounts of cell-free system-synthesized truncated Notch-1 protein (Notch-1-IC). As a probe, we used a ³²P-labeled oligonucleotide derived from the murine HES-1 promoter (positions 91 to 47), which contains two RBP-J consensus sequences (80 to 74 [5'-GTGGGAA-3'] and 66 to 60 [5'-TTGGGAA-3']) (Fig. 6A), or the NF-B2-specific oligonucleotide SL332 (Fig. 6B). Specific protein-DNA complexes were identified by using antibodies directed against RBP-J and RelA (p65). Complex A turned out to contain RBP-J (Fig. 6A, lane 5). This complex binds to the NF-B2 probe (Fig. 6B) as well as to the HES-1 probe (Fig. 6A). In contrast, an additional, more slowly migrating complex (Fig. 6B, band B) could be identified with the NF-B2-specific oligonucleotide but not the HES-1 probe, which contains no B site. A RelA (p65)-specific antiserum supershifted this additional complex (Fig. 6B, band F, lanes 3 and 8), suggesting that this complex contains RelA. The strong NF-B binding activity is in part due to intrinsic NF-B proteins in the reticulocyte lysate added to the binding reactions shown in lanes 4 to 8 (compare with Fig. 2, lanes 3 to 10). Increasing amounts of cell-free system-synthesized truncated Notch-1 protein led to the disappearance of the RBP-J-specific complex A, which bound to the HES-1 probe (Fig. 6A; compare lanes 2 to 4 with lane 1) and to the NF-B2 probe (Fig. 6B; compare lanes 4 to 7 with lane 1), suggesting that activated Notch-1 interacts with Rep-B/RBP-J in both cases.

View larger version (87K): [in this window] [in a new window]   FIG. 6.   Cell-free system-synthesized Notch-1-IC interacts with Rep-B/RBP-J from Jurkat T cell nuclear extracts (Jurkat-NE) at the HES-1 and NF-B2 promoters. (A) Extracts (2 µg) were incubated without (lane 1) or with increasing amounts of (lanes 2 to 5) reticulocyte lysate programmed with Notch-1-IC (mNotch-1IC). Volumes were equalized by addition of pure reticulocyte lysate. A 32P-labeled HES-1-specific double-stranded oligonucleotide (SL366) was used as a probe. Rep-B/RBP-J binding activity (complex A) is evidenced by an RBP-J-specific antibody (-RBP) supershifting a novel band (complex C). Note that this more slowly migrating band (lane 5) does not represent a Notch-1-IC-containing complex. (B) Extracts (2 µg) were incubated without (lane 1) and with increasing amounts of (lanes 4 to 8) reticulocyte lysate programmed with Notch-1-IC. 32P-labeled NF-B2-specific oligonucleotide SL332 was used as a probe. In addition to the Rep-B/RBP-J-specific DNA binding activity (complex A) that was recognized by a specific antibody (-RBP), a second complex (complex B) was detected in nuclear extracts and was more abundant after addition of reticulocyte lysate. Treatment with an antiserum directed against RelA (p65) (-p65) interfered with this binding activity and supershifted band F (lanes 3 and 8).

View larger version (51K): [in this window] [in a new window]   FIG. 7.   (A) GST-Notch-1-IC forms a higher-order complex with Rep-B/RBP-J bound to the RBP-J site within the NF-B2 promoter. Fractions 12 and 25 were incubated with the GST proteins as indicated. Only the addition of GST-Notch-1-IC to a Rep-B/RBP-J-containing fraction resulted in a decrease in RBP-J-specific DNA binding activity (complex A), and a novel, more slowly migrating complex (band D) appeared. (B) GST-Notch-1-IC interacts with recombinant RBP-J in vitro. GST proteins were immobilized with Sepharose beads and incubated with cell-free system-synthesized RBP-3 (TNT-RBP-3). After extensive washing steps, the reaction mixtures were boiled and proteins were separated by SDS-polyacrylamide gel electrophoresis. The positions of molecular size markers (in kilodaltons) are shown on the left.

View larger version (30K): [in this window] [in a new window]   FIG. 8.   Truncated mammalian Notch-1 interacts with Rep-B/RBP-J DNA binding activity in transfected HEK-293 cells. (A) In cell extracts from HEK-293 cells transfected with a Notch-1-IC expression plasmid, Rep-B/RBP-J-specific DNA binding activity bound to the HES-1-specific oligonucleotide (complex A) was decreased and a more slowly migrating complex appeared (complex D). Treatment with an anti-FLAG antibody (-FLAG) recognized complex D and supershifted a novel complex, labeled E. (B) Cell extracts were prepared 48 h after transfection of 5 µg of pCMV-RBP-3 and/or 5 µg pSV-mNotch-1-IC and assayed for Notch-1-IC expression by Western blotting. (C) In cell lysates transfected with a Notch-1-IC expression plasmid, Rep-B/RBP-J-specific DNA binding activity bound to the NF-B2-specific oligonucleotide (complex A) was abolished, but no higher-order complex, could be identified; it was probably masked by additional NF-B-specific DNA binding activity (complex B).

Activated mammalian Notch-1 stimulates NF-B2 promoter activity. Since the interaction of Rep-B/RBP-J with truncated Notch-1 results in alterations of the RBP-J-specific DNA binding, we were interested in the functional consequences. Therefore, we carried out transient-transfection experiments with NF-B2-specific reporter constructs (Fig. 3) and expression plasmids for Notch-1-IC, RBP-2N, and RelA (p65). Luciferase activity of pASwt was stimulated 21-fold after transfecting 2 µg of pSV-mNotch-1-IC into COS-7 cells. This strong stimulation mediated by truncated Notch-1 was clearly diminished when pAS-SL49, which has a mutated RBP-J binding site, was used as a reporter (Fig. 9A). Therefore, transactivation of NF-B2 by truncated mammalian Notch-1 depends on the functional RBP-J site within the NF-B2 promoter.

View larger version (24K): [in this window] [in a new window]   FIG. 9.   (A) Stimulation of the NF-B2 promoter by activated Notch-1. Portions (2 µg) of reporter construct pASwt (black bars) and pAS-SL49 (open bars) were cotransfected into COS-7 cells with the indicated amounts of plasmid DNA expressing truncated Notch-1. (B) The RelA (p65)-mediated promoter activity is not further increased by the addition of Notch-1-IC, but Notch-1-IC-stimulated NF-B2 promoter activity is abrogated by RBP-2N. Portions (2 µg) of reporter construct pASwt were cotransfected into COS-7 cells with the indicated amounts of plasmid DNA expressing RelA (p65), Notch-1-IC, and RBP-2N. Luciferase activity in 100 µg of total cellular extract was determined. The basal promoter activity of each construct was set to one. Mean values and standard deviations for at least four independent experiments are shown.

Rep-B/RBP-J binds to a subset of NF-B-responsive elements. In a previous study, we investigated whether Rep-B binding was specific for the NF-B2 B elements or could also bind to other known B elements. At that time, we did not know that Rep-B was identical to RBP-J. Furthermore, we believed that the observed repression was mediated by B elements in the NF-B2 promoter. The oligonucleotides used in the former competition experiments were not designed in view of an RBP-J site overlapping the B element. For these reasons, new oligonucleotides representing B elements and flanking sequences from various genes were designed (Fig. 10B). Partially purified Rep-B/RBP-J binding activity (fraction 12 [Fig. 1A]) was used in competition experiments with the oligonucleotide SL332 as a probe. The various competitors were added in 10- and 60-fold molar excesses, and the HES-1-specific oligonucleotide SL366 served as a control. The results are shown in Fig. 10A and summarized in Fig. 10B. The tested sequences could be divided into three subclasses with regard to Rep-B/RBP-J DNA binding affinity: sequences with high, intermediate, and low levels of binding activity. Oligonucleotides with high affinity for Rep-B/RBP-J DNA were derived from the promoters of the following genes, as listed in Fig. 10B: HES-1, used as a control (lanes 6 and 7); mRBP-J (lanes 10 and 11); Bcl-3 (lanes 8 and 9); interleukin-6 (IL-6) (lanes 30 and 31); IB (lanes 28 and 29); ₂-microglobulin (lanes 20 and 21); beta interferon (IFN-) (lanes 24 and 25); and NF-B2 (first B site) (lanes 2 and 3). Moderate-level binding of Rep-B/RBP-J was observed with oligonucleotides derived from the promoters of the following genes: angiotensinogen (one B site) (lanes 18 and 19), invariant chain (lanes 32 and 33), major histocompatibility complex (MHC) class I (lanes 34 and 35), serum amyloid A₁ (SAA-1) (lanes 14 and 15), and TNF- (lanes 38 and 39). Weak binding or no affinity for Rep-B/RBP-J was detected with oligonucleotides derived from the following promoters: A20 (lanes 16 and 17), immunoglobulin heavy chain (lanes 22 and 23), Ig enhancer (lanes 26 and 27), NF-B1 (lanes 36 and 37), and NF-B2 (second B site) (lanes 12 and 13).

View larger version (72K): [in this window] [in a new window]   FIG. 10.   Rep-B/RBP-J binds to a subset of B elements. (A) Competition experiments were performed with fraction 12 of partially purified nuclear extract from Jurkat-T cells; a radiolabeled oligonucleotide (SL332) encompassing the first B element of the human NF-B2 promoter (positions 119 to 90) was used as a probe. As competitors, the unlabeled double-stranded oligonucleotides (shown in panel B) were added at 20- and 60-fold molar excesses. (B) Oligonucleotides used for competition analysis. The sequences were derived from the promoters-enhancers of the genes indicated. In each case, the putative B element (underlined) and the overlapping RBP-J site are marked. Their GenBank accession numbers are as follows: A20, M96756; angiotensinogen (Angioten.), M31673; Bcl-3, M31731; 2-microglobulin (2-Micro), M12485; immunoglobulin heavy chain, U17387; HES-1, D16464; IFN-, V00534; Ig, X00268; IB, U08468; IL-6, M22111; invariant chain, M35872; MHC-I, M11847; NF-B1, X63942; RBP-J, X58337; SAA-1, M64088; and TNF-, X59352. Symbols: +, strong binding; +/, intermediate-level binding; , weak or no binding.

	DISCUSSION

Top Abstract Introduction Materials & Methods Results Discussion References

In a previous report, we demonstrated a negative transcriptional regulation of NF-B2 mediated by B elements in its promoter region. A ubiquitously expressed DNA binding activity which binds specifically to this region was identified. Because of its putative repressive effect, this binding activity was named Rep-B. Rep-B activity did not bind solely to the NF-B2 B element; it also bound to B sites present in the IFN- and ₂-microglobulin enhancers. In contrast, no binding to the canonical B site was observed. Therefore, we postulated the existence of a novel mode of B-dependent regulation mediated by Rep-B (34).

Here we have provided biochemical and functional evidence that Rep-B binding activity is identical or closely related to RBP-J. This assumption is based on the following findings. (i) By using partially purified Rep-B binding activity in competition experiments, we identified an 8-bp Rep-B binding motif (CATGGGAA) with strong sequence homology to the RBP-J consensus site (CGTGGGAA). This Rep-B/RBP-J binding site partially overlaps a functional B element (GGGAATTCCC). (ii) Partially purified Rep-B activity binds with high affinity to a known RBP-J-responsive site in the murine HES-1 promoter. (iii) Different in vitro-translated RBP-J splice variants bind to the Rep-B binding site in the NF-B2 promoter. (iv) In supershift assays, Rep-B activity is recognized by a specific antibody raised against RBP-J. (v) In transient-transfection assays, RBP-2N represses NF-B2 promoter activity.

Several observations suggesting a role for RBP-J in the regulation of NF-B-inducible genes have been published. (i) KBF2 was purified with a ₂-microglobulin B affinity column and found to be identical to RBP-J (27). (ii) A DNA binding activity with affinity for the MHC class I probe was purified from thymic nuclear extracts and identified as RBP-J (51). Binding of RBP-J to the MHC class I oligonucleotide was not evident in splenic extracts, suggesting the occurrence of tissue-specific binding. (iii) Recently, RBP-J was shown to be involved in transcriptional repression of the IL-6 gene. An RBP-J binding site overlapping with a functional B element was identified as being responsible for this repression (30, 44).

In this report, we have shown that human RBP-J (RBP-2N) strongly represses basal as well as RelA (p65)-induced NF-B2 promoter activity, suggesting that RBP-J acts as a repressor of NF-B2 transcription. Previously, we did no