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Mol Cell Biol, April 1998, p. 2371-2381, Vol. 18, No. 4
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Coupling of Cell Growth Control and Apoptosis
Functions of Id Proteins
John D.
Norton* and
Graham T.
Atherton
CRC Department of Gene Regulation, Paterson
Institute for Cancer Research, Christie Hospital NHS Trust,
Manchester M20 9BX, United Kingdom
Received 22 May 1997/Returned for modification 27 July
1997/Accepted 23 December 1997
 |
ABSTRACT |
The Id family of helix-loop-helix proteins function as negative
regulators of cell differentiation and as positive regulators of
G1 cell cycle control. We report here that enforced
overexpression of the Id3 gene suppresses the colony-forming efficiency
of primary rat embryo fibroblasts. Cotransfection with the
antiapoptotic Bcl2 or BclXL gene alleviates this
suppression and leads to cell immortalization. Consistent with this,
enforced expression of Id genes in isolation was found to be a strong
inducer of apoptosis in serum-deprived fibroblast cells. Id3-induced
apoptosis was mediated at least in part through p53-independent
mechanisms and could be efficiently rescued by Bcl2, BclXL,
and the basic helix-loop-helix protein E47, which is known to oppose
the functions of Id3 in vivo through the formation of stable
heterodimers. Enforced overexpression of Id proteins has previously
been shown to promote the cell cycle S phase in serum-deprived embryo
fibroblasts (R. W. Deed, E. Hara, G. Atherton, G. Peters, and
J. D. Norton, Mol. Cell. Biol. 17:6815-6821, 1997). The extent of
apoptosis induced by loss- and gain-of-function Id3 mutants and by
wild-type Id3 either alone or in combination with the Bcl2,
BclXL, and E47 genes was invariably correlated with the
relative magnitude of cell cycle S phase promotion. In addition,
Id3-transfected cell populations displaying apoptosis and those in S
phase were largely coincident in different experiments. These findings
highlight the close coupling between the G1 progression and
apoptosis functions of Id proteins and hint at a common mechanism for
this family of transcriptional regulators in cell determination.
 |
INTRODUCTION |
In mammals, four distinct members of
the family of dominant negative helix-loop-helix (HLH) Id proteins, Id1
to Id4, have been identified (5, 6, 9, 36, 45). Accumulating
biochemical and genetic evidence implicates the function of these
proteins as being in the regulation of cell growth and
differentiation in numerous cell lineages. The distinguishing
characteristic shared by this family of transcriptional regulators, as
originally described for the prototype, Id1 (5), is their
lack of a basic DNA-binding domain and their consequent ability to
antagonize the functions of DNA-binding basic HLH (bHLH) transcription
factors through the formation of nonfunctional Id-bHLH heterodimers
(5, 36). In several cell types, exemplified by skeletal
myocytes (26) and B lymphocytes (39, 54, 61), Id
proteins inhibit bHLH-dependent expression of genes associated with
terminal differentiation. Moreover, enforced expression of at least the
three well-characterized Id proteins, Id1, Id2, and Id3, has been shown
to arrest differentiation in a variety of in vitro cell line models
(39, 54, 61), and targeted ectopic expression of the Id1
gene in vivo reportedly arrests early B-lymphocyte development
(53). Thus, Id proteins function at a general level as
negative regulators of differentiation by opposing the functions of
bHLH transcription factors.
In mammalian cell lines, the expression of Id genes is strongly
responsive to signalling pathways coupled to mitogenic growth factors
(5, 9, 12). Indeed, the mouse and human Id3 genes were
identified from cDNAs derived from transcripts encoded by early-response genes (ERGs) (9, 12). Following growth factor withdrawal or in quiescent, G0 senescent, or terminally
differentiated cells, Id expression is down-regulated (3, 9, 12,
22, 23). By contrast, Id genes in tumor cells display a general pattern of deregulation (1, 12, 62), consistent with the uncoupling of growth and differentiation controls characteristic of
malignancy. During traverse of the cell cycle, Id gene expression is
induced during the early G1 phase, followed by a second
minor peak of induction coincident with late G1 or early S
phase (3, 9, 12, 23). Moreover, partial ablation of Id
protein expression or function through antisense oligonucleotide
blockade (3, 23) or antibody microinjection (43)
strategies results in a delayed entry of cells into the S phase
of the cell cycle, implicating Id function in the regulation of
G1 progression. Such a role in cell cycle control is
further substantiated by the finding that certain bHLH
transcriptional regulators such as the E2A-encoded E47 (43)
and the muscle-determining MyoD (10, 52) proteins, whose functions are antagonized through heterodimerization with Id proteins, are themselves capable of mediating a G1
cell cycle arrest when ectopically overexpressed in cell line models.
In common with several other ERG-encoded proteins implicated in
G1 cell cycle control, enforced ectopic expression of Id
proteins, at least in some cell types, promotes cell growth, in
addition to arresting differentiation (2, 16, 25, 35).
Finally, the Id2 protein, but not apparently the Id1 or Id3 family
members, is capable of abrogating the growth-suppressive functions of
the tumor suppressor, p16, p21, and Rb proteins through a direct
interaction with the Rb protein (25, 33), which, in its
unphosphorylated state, acts as a pivotal negative regulator of cell
cycle S phase commitment (4).
We previously showed that transfection of the Id3 gene into established
mouse NIH 3T3 cells induces a morphologically transformed phenotype,
but this was not accompanied by any other features of oncogenic
transformation (12). In further evaluating its oncogenic
potential, we report here that the Id3 gene cooperates with the
antiapoptotic Bcl2 and BclXL genes to immortalize primary rat embryo fibroblasts (REF). Consistent with this, enforced expression of Id3 (and of Id1 and Id2) in isolation was found to be a strong inducer of apoptosis in serum-deprived REF cells. Id-mediated apoptosis
was mediated at least in part through p53-independent mechanisms and
could be efficiently rescued by Bcl2, BclXL, and the bHLH
protein E47. In addition, using various loss- and gain-of-function Id3
mutants, we found that the induction of apoptosis was invariably correlated with the ability of Id3 to promote the cell cycle S phase.
These findings highlight the close coupling between the G1
progression and apoptosis functions of Id proteins and indicate a
common mechanism for this family of transcriptional regulators in cell
determination.
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MATERIALS AND METHODS |
Cell culture.
NIH 3T3 cells were maintained in Dulbecco
modified Eagle medium supplemented with 10% newborn calf serum (NBCS).
Primary REF were prepared from day 14 rat embryos (32).
Primary mouse embryo fibroblasts (MEF) from day 16 to 18 wild-type and
p53
/
mice were prepared as described previously
(60) and were cultured in Dulbecco modified Eagle medium
supplemented with 10% fetal calf serum. All primary cells were
cryopreserved and used for experiments within two or three passages of
isolation. Cos7 cells and RPMI 8225 cells (obtained from the American
Type Culture Collection, Rockville, Md.) were maintained in RPMI medium
supplemented with 10% fetal calf serum.
Plasmid and vector constructs.
Full-length cDNAs
encompassing the respective coding regions of human Id1
(15), Id2 (14), and Id3 (12) together
with Id3 Ala5 and Id3 Asp5 mutants (13) were cloned into the
vector pcDNA3 (Invitrogen) to generate pcDNAId vectors for use in
transient transfections. For some stable transfections, wild-type Id3
cDNA was cloned into the vector pcDNA1 and used in conjunction with pSV2Neo, providing a selectable marker. Additionally, the Id3 cDNA was
cloned into the vector pUHD10-1 (20) to generate the tetracycline transactivator (tTA)-responsive vector pUHId3 and was used
in conjunction with pJEF33, encoding the tetracycline-regulatable tTA
protein (49). Expression constructs carrying
c-myc (pDoRG123) (42) and activated
ras (pUC EJ6.6) (48) oncogenes were a gift from
H. Land (ICRF Laboratory, London, United Kingdom). The Bcl2 expression
vector (pMPZenBcl2) (55) was obtained from S. Cory, and the
BclXL vector (pSFFV-Bclxl) (7) was obtained from
C. Thompson. pCMVE47, encoding the E2A protein E47 (56), was
obtained from X.-H. Sun, and the LacZ expression vector, pEQ176
(47), was obtained from M. R. Schleiss.
Transient-transfection analysis.
Subconfluent cultures of
embryo fibroblasts in 60-mm-diameter dishes were transfected with a
total of 8 µg of DNA by using the standard calcium phosphate
procedure, essentially as described previously (12).
Typically, transfected DNA comprised 6 µg of Id expression construct
and 2 µg of pEQ176 LacZ marker gene. In experiments employing
multiple expression constructs (at 3-µg input), the total DNA input
was adjusted to 8 µg with empty vector (pcDNA3). After incubation
overnight with DNA precipitate, cells were trypsinized and reseeded
onto glass slides for a further 24-h culture period. As appropriate,
cells were then shifted to low-serum (0.5%) culture medium for a
further 18 to 24 h. Cells were pulsed with 10 µM
bromodeoxyuridine (BrdU) for 2 h prior to fixation to facilitate
analysis of cell cycle S phase. Cells were fixed in 4%
paraformaldehyde for 30 min at room temperature and then incubated for
a further 1 h at room temperature in blocking solution (5%
Marvel) (dried milk in phosphate-buffered saline [PBS]). For
immunostaining for LacZ expression, cells were incubated overnight at
4°C with a 1/500 dilution of rabbit LacZ antibody (5 Prime to 3 Prime
Inc.). After being washed three times in PBS, slides were treated with
a 1/500 dilution of biotin-labelled antirabbit secondary antibody
(Dako) for 1 h at room temperature, washed three times in PBS, and
then incubated for 1 h with a 1/100 dilution of
streptavidin-fluorescein isothiocyanate (FITC) (Dako) at room temperature. In some experiments, cells were immunostained for Id3
expression instead of for LacZ expression (see below). Cells were then
treated with 2 M HCl for 20 min at 37°C and immunostained for BrdU
incorporation by using a commercial kit (Boehringer) according to the
manufacturer's instructions, except that a Texas red-conjugated
antimouse antibody was substituted for the secondary antibody step.
Slides were finally mounted in Vectashield mountant containing
4',6-diamidino-2-phenylindole (DAPI) and were evaluated by fluorescence
microscopy. In quantitative analysis, a minimum of 200 LacZ-positive
cells were evaluated in each transfection.
Stable transfections.
For focus assays, 50% confluent
monolayers of REF cells in 3.5-cm-diameter dishes were transfected with
8 µg of DNA by the calcium phosphate procedure as described above.
DNA mixtures comprised 6 µg of each expression construct as
appropriate and were normalized to 8 µg with pBluescript carrier DNA
(Stratagene). Cells were trypsinized after overnight incubation with
precipitates and were seeded into 25-ml flasks (for enumeration of
foci) or onto glass slides (for immunostaining). Cells were refed every
3 to 4 days and were evaluated for foci after 3 weeks for Ras- plus
Myc-generated foci and after 4 weeks for Id3-generated foci.
Colony-forming efficiency (CFE) assays were performed by transfection
of fibroblasts as described above except that 2 µg of pSV2Neo vector
was included as a selectable marker. Following transfection, cells were
reseeded into 10-cm-diameter dishes. G418 selection (0.15 mg/ml for
REF; 0.5 mg/ml for NIH 3T3 cells) was applied the following day, and
individual colonies (comprising greater than 100 cells) were scored
after a further 2 weeks for NIH 3T3 cells and after 3 weeks for REF
cells. Stable transfectant cell lines were established from individual
colonies in some experiments. Cells were passaged every 3 days
continuously over several months (or until the cells ceased to be
viable). Immortalized lines were maintained in 5% NBCS after week 15.
Stable transfectant cell lines were also generated by cotransfecting
REF cells either with 3 µg of pUHD10-1 (control vector)
(
20) or with 3 µg of pUHDId3 together with 3 µg of
pJEF33 and
2 µg of pSV2Neo. Cells were trypsinized at 24 h
posttransfection
and were reseeded into replicate 25-ml flasks and
10-cm-diameter
dishes and subjected to G418 selection (0.15 mg/ml) in
the presence
of 100 ng of anhydrotetracycline (TET) (Janssen Chimica
Co.) per
ml. After a further 3 weeks, pools of cell clones (derived
from
at least 200 colonies) were subjected to further analysis.
Individual
cell colonies were picked from dishes and expanded for
analysis
of Id3 expression. TET suppression of expression was
maintained
throughout unless otherwise stated.
Immunostaining and Western analysis of Id3 protein.
Cells
grown on microscope slides were fixed in 4% paraformaldehyde for 30 min at room temperature and then incubated with 5% Marvel evaporated
milk blocking solution in PBS for a further 1 h. Incubation with
primary anti-Id3 rabbit polyclonal antibody, RD1 (11), was
performed for 16 h at 4°C with a 1/400 dilution of antiserum
(diluted in PBS supplemented with 3% bovine serum albumin). Slides
were washed in PBS, incubated with a 1/100 dilution of FITC-conjugated
antirabbit secondary antibody (Dako) for 1 h at room temperature,
and then washed in PBS prior to evaluation by fluorescence microscopy.
To demonstrate the specificity of Id3 staining in selected experiments,
a homologous peptide competitor (PIQTAELAPELVISNDKRSF) or heterologous
peptide competitor (ISALAAEAACVPADDRIL) at a concentration
of 200 µg/ml was used to block the RD1 primary Id3 antibody prior to
addition to fixed cells. For Western analysis, cells were harvested by
lysis in radioimmunoprecipitation assay buffer (50 mM Tris [pH 8.0],
150 mM sodium chloride, 1% Nonidet P-40, 0.5% sodium deoxycholate,
0.1% sodium dodecyl sulfate), followed by electrophoresis on a 12%
polyacrylamide-sodium dodecyl sulfate gel and Western blotting and
probing with RD1 anti-Id3 antibody, essentially as described previously
(2). Western analysis for Bcl2 and BclXL
proteins was performed following electrophoresis on 12% polyacrylamide
gels. For Bcl2, a mouse monoclonal antibody (Dako) was used at a
dilution of 1/250, followed by incubation with horseradish
peroxidase-conjugated rabbit antimouse antibody (Dako) at a dilution of
1/2,000. For BclXL, a rabbit polyclonal antibody
(Transduction Labs) was used at a dilution of 1/100, followed by
incubation with horseradish peroxidase-conjugated swine antirabbit
antibody at a dilution of 1/2,000. Horseradish peroxidase activity was
detected by using an ECL chemiluminescence kit (Amersham Life Sciences,
Amersham, United Kingdom) as described by the manufacturer.
Analysis of apoptosis and cell cycle S phase in stable
transfectants.
Analysis of apoptosis from nuclear morphology (DAPI
staining) and determination of cell cycle S phase by BrdU incorporation in individual cell clones was performed exactly as described above for
transient transfections except that the step for detection of LacZ
marker gene expression was omitted. Pooled cell populations were
evaluated for coexpression of exogenous Id3 protein and DAPI-stained nuclear morphology as described for transient transfections.
Apoptotic cells were also monitored by an in situ end-labelling (ISEL)
procedure utilizing DNA polymerase I to label DNA ends
generated in
fragmented nuclei (
59). This used digoxin-labelled
deoxynucleoside triphosphates and detection with anti-digoxigenin
peroxidase and diaminobenzene. Slides were counterstained with
hematoxylin.
Detection of early apoptotoic cells (following serum deprivation for
2 h) by monitoring cell surface expression of phosphatidylserine
was performed by staining with an FITC conjugate of annexin V
(
38) by using a commercial kit (Clontech Labs Inc.)
essentially
as described by the manufacturer. Cells were counterstained
with
propidium iodide (PI). pUHId3-transfected cells were also
incubated
in low-serum medium for 24 h prior to PI staining to
detect late
apoptotic cells and as a positive control for PI staining.
 |
RESULTS |
Transformation of primary embryo fibroblasts by Id proteins.
We evaluated the oncogenic potential of Id genes by using the sensitive
assay of primary REF cells (32). As shown in Fig. 1, transfection of the pcDNAId3
expression vector alone into REF cells led to the appearance of
morphologically distinct foci of transformed cells which immunostained
strongly positively for Id3 protein. Similar foci were also induced by
the Id1 and Id2 genes (data not shown). To determine whether the Id3
gene could cooperate with other oncogenes in transforming primary
cells, the number of foci induced by pcDNAId3 in combination with Ras- or Myc-expressing constructs was evaluated, as shown in Fig.
2. Whereas a combination of Id3 plus Ras
led to a marginal (30%) increase in the number of foci compared with
that induced by Id3 alone, Id3 plus Myc resulted in a marginal (30%)
suppression in focus formation. In both cases the morphology and time
of appearance of foci were indistinguishable from those seen with Id3
in isolation. The foci were also clearly distinct from the ill-defined
foci induced by Ras or Myc alone (data not shown). These results
contrasted markedly with the approximately 10-fold increase in the
number of foci induced by a combination of Myc plus Ras (Fig. 2).
Consistent with previous studies (32), these foci appeared
with a shorter latency period (3 weeks), were faster growing, and
displayed a highly refractive morphology comprised of rounded cells
which readily detached from the culture dish (data not shown). Numerous attempts to derive established lines from REF cells transfected with
Id3 either alone or in combination with Ras or Myc were unsuccessful. Either the cells underwent senescence after several passages or, when
stable lines were obtained, they failed to express levels of Id3 mRNA
and protein above those seen in controls (data not shown). This finding
suggested that ectopic expression of Id3, although capable of
stimulating growth to the extent that morphologically distinct foci
were induced in monolayer cultures, was not compatible with long-term
survival of these primary cells. Moreover, this failure to grow out as
stable transformants could not be compensated by cooperative functions
supplied by either Ras or Myc oncogenes.

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FIG. 1.
Morphology of foci induced by Id3 transfection of REF
cells. (A) Early-passage primary REF cells were transfected with
pcDNAId3 vector and scored for morphologically transformed foci after 3 to 4 weeks. The phase-contrast photograph illustrates the morphology of
a typical Id3-induced focus of transformed cells, and the
immunofluorescence photograph shows high levels of Id3 protein
associated with the focus in the same field of view. Cells transfected
with a control, empty vector (pcDNA3) did not give rise to such
distinctive Id3-expressing foci (data not shown). (B) An individual Id3
focus was picked, and the cells were replated onto slides. To
demonstrate the specificity of detection of Id3 protein, the cells were
subjected to immunostaining either with or without primary antibody (in
combination with FITC-labelled secondary antibody) and with either a
homologous or heterologous competitor peptide as shown.
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FIG. 2.
Induction of foci by Id3 in combination with
ras and c-myc oncogenes. Replicate
3.5-cm-diameter dishes of primary REF cells were transfected with the
indicated expression constructs for Id3 (pcDNAId3), Ras (pUC EJ6.6) and
c-Myc (pDoRG123). Input DNA was normalized to 8 µg for all
transfections with pBluescript carrier DNA. Numbers of foci were scored
after 2 to 3 weeks for Ras plus c-Myc or after 5 weeks for all other
transfections. The data from replicate analyses are representative of
several independent experiments. Error bars indicate standard
deviations.
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The antiapoptotic Bcl2 and BclXL genes cooperate with
Id3.
The apparent poor survival of Id3-expressing cells and/or
their intolerance of exogenous Id3 was intriguing, since we and others
previously reported that stable transformants of established NIH 3T3
fibroblast lines could be readily generated following transfection with
Id genes (12, 43). We further evaluated this issue by
employing a colony survival assay with either NIH 3T3 cells or REF
cells as recipients for transfection, as shown in Fig.
3. Consistent with previous data
(12, 43), transfection of Id3 into established NIH 3T3 cells
did not significantly affect the number of surviving colonies (Fig. 3)
or the growth rate of transfected cells, although the majority of
colonies were comprised of highly refractive cells as reported in our
earlier studies (reference 12 and data not shown).
By contrast, the number of surviving colonies of REF cells was
suppressed approximately 10-fold following transfection with Id3 (Fig.
3), consistent with the apparent intolerance of these cells to
exogenous Id3 alluded to above. We also noted that many of the colonies
generated from Id3-transfected REF cells grew poorly and had a
propensity to detach from the culture dish, with widespread cell death.
This observation prompted us to investigate whether cotransfection of
the cell survival Bcl2 and BclXL genes (29, 57)
could rescue the Id transfectants. However, overexpression of Bcl2 and
BclXL family members themselves has previously been shown
to be growth suppressive and/or to reduce survival in several cell
types (41). Consistent with this, transfection with the Bcl2
expression vector alone suppressed colony formation of REF cells to the
same extent as did Id3 (Fig. 3). The suppressive effect of
BclXL transfection in isolation was less marked than this,
reducing CFE by around 60% (Fig. 3). In marked contrast, when either
of these two genes was transfected in combination with the Id3 vector,
the CFE was stimulated 10-fold compared with that seen with the Id3
vector alone and indeed was restored to the level seen in cells
transfected with control vector (Fig. 3). Moreover, individual colonies
from Id3- plus Bcl2- or from Id3- plus BclXL-transfected
cells readily established rapidly proliferating immortalized cell
lines, in contrast to cells transfected with each of these genes in
isolation (Table 1). These stable
transformants expressed readily detectable Id3 protein (Fig.
4) and have been maintained continuously
in culture for several months.

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FIG. 3.
Effect of Id3 transfection on CFE. Replicate
3.5-cm-diameter dishes of subconfluent NIH 3T3 cells or primary REF
cells were transfected with pSV2Neo vector in combination with Id3
vector (pcDNA1Id3), Bcl2 vector (pMPZenBcl2), or BclXL
vector (pSFFV-Bclxl). All transfections were normalized to 8 µg with
pBluescript carrier DNA. At 24 h posttransfection, cells were
trypsinized and replated in 10-cm-diameter dishes and G418 selection
was applied for 2 to 3 weeks, at which time colonies comprised of
greater than 100 cells were enumerated. Error bars indicate standard
deviations.
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FIG. 4.
Detection of Id3 and Bcl proteins in immortalized REF
transfectants. Western blot analysis was performed on cell lysates from
two cell clones (cl2 and cl4) transfected with Id3 plus Bcl2 vectors
and from two clones (cl6 and cl7) transfected with Id3 plus
BclXL vectors. The expression levels of Id3 in
transfectants were compared with those of endogenous Id3 protein from
control REF cells and from Cos cells either mock transfected (Cos) or
transfected with Id3 vector (Cos plus Id3). The expression levels of
Bcl2 and BclXL proteins in immortalized clones were
similarly compared with endogenous levels of these proteins in control
REF cells and in Cos cells either mock transfected or transfected with
the respective Bcl vector. An additional positive control from the
human B-cell line RPMI 8225 was included in the analysis of Bcl2
protein.
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We conclude from these experiments that Id3 cooperates with the Bcl2
and BclX
L oncogenes to immortalize primary REF cells.
Since
the distinguishing property of the Bcl2 and BclX
L genes
is
their ability to rescue cells from apoptosis (
29,
57),
these
data also suggested that our earlier failure to generate
established
lines with Id3 in isolation was attributable to an
ability of this
gene, when overexpressed, to promote apoptosis.
It should be noted,
however, that because of the considerable
cell death in control cells
that occurred during drug selection
in the CFE assay (Fig.
3) and
during continual passage of control
REF cells in the immortalization
assay (Table
1), we were unable
to demonstrate directly that Id3
promotes apoptosis under these
experimental conditions.
Id genes induce apoptosis in serum-deprived fibroblasts.
Enforced overexpression of all three well-characterized Id genes, Id1,
Id2, and Id3, has been reported to promote cell growth in some but not
all cell types (2, 13, 16, 25, 35). Typically, this is
manifested by the ability of Id-transfected cells to continue cycling
on withdrawal of mitogenic growth factors, as evidenced by the
percentage of cells in S phase (2, 13). We reasoned that by
analogy with other growth-promoting ERGs which also induce apoptosis,
such as c-myc (17, 18) and the cyclin D gene
(31, 51), these experimental conditions would also be most
conducive for observing any apoptotic effects elicited by
overexpression of Id genes. As depicted in Fig.
5A, transient transfection of expression
constructs carrying the three Id genes into REF cells led to an
accumulation of a significant fraction of cells in S phase following
serum deprivation. Similarly, when the nuclear morphology of Id
transfectants under these conditions was assessed by staining with
DAPI, all three Id-transfected lines displayed evidence of apoptotic
nuclei (Fig. 5B). Significantly, the S phase and presumptive apoptotic
cell populations in these experiments were largely coincident (Fig.
5C). By contrast, no significant apoptosis above the level in control
transfectants was observed in the presence of serum (data not shown).

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FIG. 5.
Induction of apoptosis by transient transfection of Id
genes. Subconfluent replicate monolayers of primary REF cells in
3.5-cm-diameter dishes were transfected with the LacZ-expressing marker
gene pEQ176 in combination with carrier DNA alone (bars C) or with each
of the Id vectors as indicated. At 36 h posttransfection, cells
were deprived of serum for 24 h and then pulse-labelled with BrdU,
after which plates were fixed and immunostained for LacZ expression and
for BrdU incorporation and the DAPI stained for evaluation of nuclear
morphology. At least 200 LacZ-positive cells were scored for each
transfection. Panel C illustrates the appearance of typical fragmented
nuclei revealed by DAPI staining in LacZ-positive (Id3-expressing)
cells that were also BrdU positive.
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To obtain more conclusive evidence for this Id-mediated apoptosis, we
derived stable transfectants in which the Id3 gene was
conditionally
expressed under control of the tTA protein, facilitating
negative
regulation by the drug TET (
20,
49). By maintaining
cells in
TET-containing medium throughout selection and subsequent
propagation,
we could obviate the potential toxicity caused by
exogenous Id3
expression. Initially, we examined polyclonal populations
of such
transfectants. Because these cells were generated by cotransfection
with three different plasmid vectors (pUHId3, under control of
the tTA
protein; pJEF33, encoding the tTA protein itself; and
pSV2Neo, to
facilitate selection), only a fraction of the resulting
G418-resistant
population (10 to 20% of cells) expressed detectable
exogenous Id3
protein when assessed by immunofluorescence (Fig.
6A). This expression was almost totally
suppressed when cells
were cultured in the presence
of the drug TET (Fig.
6A and B).
When the Id-expressing transfectants
were cultured in the presence
of serum, the nuclear morphology of
Id3-expressing cells as assessed
by DAPI staining appeared normal,
whereas on removal of serum
for 24 h, the Id3-expressing cells,
but not nonexpressing cells
in the same population (or cells in control
transfectants), acquired
a highly condensed nuclear morphology,
characteristic of apoptotic
cells (Fig.
6A). These experiments with
cells stably transfected
with inducible Id3 vector essentially confirm
the results obtained
with transient transfections. As additional
criteria of apoptosis,
the cell population stably transfected with Id3
stained positive
following ISEL analysis (
59) and annexin
labelling (
38) when
cultured in the absence of TET and serum
(Fig.
6C). As with the
DAPI analysis, no significant staining with
these markers was
observed in Id3 transfectants cultured in the
presence of TET
or in control, empty vector transfectants in the
absence of TET
(Fig.
6C).

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FIG. 6.
Id3 overexpression induces apoptosis in stable
transfectants. (A) Primary REF cells stably transfected with the Id3
vector pUHD-Id3 and then selected as a polyclonal population were
seeded onto slides and cultured in either the presence or absence of
TET for 2 days. An additional parallel culture was deprived of serum
during the second day of the experiment. Cells were immunostained by
using anti-Id3 antibody (FITC) and counterstained with DAPI for
evaluation of nuclear morphology. The photograph shows representative
fields of view for each of the culture conditions. The percentage of
Id3-positive cells displaying an apoptotic nuclear morphology was
assessed from evaluation of at least 200 Id3-positive cells under each
set of culture conditions. Control, empty vector (pUHD10-1)-transfected
cell populations assessed in parallel displayed only low (endogenous)
levels of Id3 protein expression and did not exhibit significant
apoptosis under the different growth conditions used in the experiment
(data not shown). From the number of G418-resistant colonies obtained
following drug selection, the transfection efficiency of these cells
was comparable to that obtained with pUHDId3. ND, not determined since
there were too few cells with levels of Id3 protein significantly
higher than the endogenous level to permit evaluation. (B) Lysates from
cells transfected with either empty vector control (pUHD10-1) or pUHId3
and cultured in the presence or absence of TET for 48 h were
analyzed by Western blotting for Id3 protein, migrating as a 15-kDa
species. (C) Cells stably transfected with control empty vector
(pUHD10-1) or with the Id3 vector pUHDId3 were seeded onto microscope
slides and were cultured in low-serum medium for up to 24 h. Where
indicated, TET was removed from cultures 24 h prior to the shift
to serum deprivation conditions. Cells were stained for ISEL at 24 h and for annexin (in parallel with PI) after 2 h of serum
deprivation. As a marker of late apoptosis and as a positive control,
pUHDId3-transfected cells were further stained with PI after 24 h
of serum deprivation. For pUHDId3-transfected cells cultured in the
absence of TET (permissive for inducible Id3 expression [see panel
A]), 5 to 10% of the total population of serum-deprived cells was
apoptotic by ISEL and annexin analysis in several experiments (400 to
500 cells were evaluated). By contrast, fewer than 0.5% of
pUHDId3-transfected cells grown in the presence of TET or pUHD10-1
(control) cells grown in the absence of drug were apoptotic.
|
|
To confirm and extend these findings, we also isolated a number of
single clones of Id3 transfectants from these polyclonal
populations.
As shown in Fig.
7, three clones which
expressed
exogenous Id3 were identified in this way. In two cell
clones,
Trld3-4 and Trld3-12, expression of Id3 protein was TET
repressible,
whereas in the third (Trld3-13), the expression of
exogenous protein
was essentially constitutive, with only a marginal
induction on
removal of TET. The immunofluorescence data in Fig.
7 also
illustrate
the predominantly perinuclear intracellular distribution of
exogenous
Id3 protein, as reported in previous studies (
11).

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FIG. 7.
Detection of exogenous Id3 protein in stable
transfectant clones. Cells from a control transfectant (transduced with
empty vector [pUHD10-1]) and from the three Id3 transfectants
indicated were seeded on microscope slides and cultured in the presence
or absence of TET for 48 h prior to fixation and immunostaining
with RD1 anti-Id3 antibody and counterstaining with DAPI as a
cell/nuclear marker.
|
|
Cultures of all three transfectant clones died after 1 to 2 days
following removal of serum in the absence of TET, with virtually
all
cells rounding up and forming cytoplasmic protrusions prior
to
detachment, in a manner typical of apoptosis (data not shown).
In the
two clones Trld3-4 and Trld3-12, this cell death was TET
suppressible.
To more empirically evaluate the apoptotic responses
of these Id3
transfectants, we analyzed the three clones in parallel
with two
control clones (transduced with empty vector, pUHD10-1)
by DAPI
staining and ISEL analysis, as shown in Fig.
8. The apoptotic
responses in Id3 clones
Trld3-4 and Trld3-12 as assessed by both
criteria were strongly
regulatable by TET, whereas in Trld3-13,
expressing constitutive levels
of Id3, the apoptotic response
was largely independent of the presence
of the drug.

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FIG. 8.
TET-regulated apoptotic response in Id3-transfected cell
clones. Replicate cultures of two control cell lines and three Id3
transfectants on slides were incubated in the presence or absence of
serum, having been removed from TET-containing medium 48 h prior
to this where indicated. Cells were assessed by ISEL analysis at
24 h or by DAPI staining at 24 h, and the results were
evaluated for at least 100 cells in each culture. Data for apoptotic
response in the presence of serum are not shown, since in all cases
this was minimal (less than 5%). Error bars indicate standard
deviations.
|
|
Mechanisms of Id-induced apoptosis.
Recent studies have shown
that cyclin A- and cyclin E-dependent Cdk2 phosphorylation of the Id2
and Id3 proteins at a conserved serine residue at position 5 modulates
the ability of these proteins to antagonize bHLH-dependent gene
expression (21) and abrogates their function in promoting
cell cycle S phase in serum-deprived fibroblasts (13). To
determine whether this cell cycle-regulated phosphorylation of Id
proteins affects their apoptotic functions, we transfected
phospho-ablation (Ala5) and phospho-mimicking (Asp5) mutants of the Id3
expression construct into REF cells and then subjected the cells to
serum deprivation. In addition to empty vector and wild-type Id3
controls, we also included another Id3 mutant, the Pro49 mutant, in
which substitution of a proline residue in the H1 domain severely
impairs its ability to heterodimerize with bHLH protein targets
(11, 58). The expression levels of wild-type and mutant
proteins were comparable in transfected cells (data not shown). As
shown by the experiment in Fig. 9A, whereas the Asp5 mutant had a much-reduced function in promoting cell
cycle S phase (comparable to that of the Pro49 mutant), the phospho-ablation Ala5 mutant exhibited a gain-of-function effect compared with wild-type Id3, a finding consistent with our previous studies (13). When the cells in these transfection
experiments were DAPI stained for nuclear morphology (Fig. 9B), the
apoptotic responses exactly mirrored those of the cell cycle S phase.
This implies that the Id determinants and cell cycle-linked mechanisms responsible for promoting the G1-to-S phase transition are
tightly coupled to those driving apoptosis.

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|
FIG. 9.
Effect of phospho-ablation and phospho-mimicking mutants
of Id3 on cell cycle S phase and apoptotic responses. Replicate
subconfluent cultures of primary REF cells were transfected with pEQ176
LacZ vector together with either the control, empty vector (pcDNA3) or
expression constructs encoding wild-type Id3 (WT) or Id3 mutants (Ala5,
Asp5, and Pro49). At 24 h posttransfection, cells were shifted to
low-serum medium, and after a further 24 h they were pulsed with
BrdU and then fixed and immunostained for LacZ expression and BrdU
incorporation and counterstained with DAPI. At least 200 LacZ-positive
cells were evaluated in each transfection for BrdU positivity (A) and
for apoptotic nuclear morphology (B). C, control. Error bars indicate
standard deviations.
|
|
To further investigate the mechanisms of Id-induced apoptosis, we
evaluated how the presence of other gene products affected
the ability
of Id3 to induce apoptosis in serum-deprived fibroblasts.
Consistent
with the data obtained in CFE and cell transformation
assays (Fig.
3
and Table
1), cotransfection of Id3 with constructs
carrying the Bcl2
and BclX
L oncogenes efficiently rescued cells
from
Id3-induced apoptosis (Fig.
10A). The
bHLH protein E47 is
known to arrest the G
1-to-S phase
transition of cell cycle progression
(
43) and, as a
principle bHLH target for Id proteins, effectively
opposes their
functions (
2,
5,
26,
39,
43,
53,
54,
61). Previously, we
showed that in cells cotransfected with
Id3 and E47 vectors, the Id3
protein is associated with E47 as
a stable heterodimer in coimmune
precipitates and that the E47
protein is in functional excess
(
11). Consistent with this,
when cells were cotransfected
with a combination of E47 and Id3
vectors, only 5% of the cells were
found to be in S phase, compared
with 15% for cells transfected with
Id3 alone (Fig.
10B). As shown
in Fig.
10A, cotransfection of an E47
construct was almost as efficient
as Bcl2 or BclX
L in
rescuing cells from Id3-driven apoptosis.
Finally, we investigated
whether Id3-induced apoptosis is mediated
through p53-dependent or
p53-independent mechanisms by comparing
the responses of wild-type and
p53
/
primary MEF to enforced expression of Id3. These
experiments
were complicated by the greater propensity of MEF cells
than of
REF cells to detach from the culture dish and/or to undergo
spontaneous
apoptosis in serum-depleted medium (
34).
However, as shown in
Fig.
10A, wild-type and p53
/
MEF
cells displayed comparable susceptibilities to Id3-induced
apoptosis, a
finding which implicates mechanisms that are at least
in part
independent of p53 function.

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|
FIG. 10.
Effect of apoptosis-regulatory gene products on
Id3-induced apoptosis and cell cycle S phase. Replicate subconfluent
cultures of either primary REF cells or primary MEF cells (from
wild-type [WT] or p53 / mice) were cotransfected with
pEQ176, encoding the LacZ marker, either alone or in combination with
Id3, Bcl2, BclXL, or E47 expression constructs as
indicated. At 24 h posttransfection, REF cells were shifted to
low-serum medium for 24 h, while MEF cells were serum shifted for
only 18 h to minimize cell loss through detachment from the
monolayer. Both sets of cells were pulsed with BrdU for 2 h prior
to fixation and immunostaining for LacZ expression, BrdU incorporation,
and DAPI counterstaining for evaluation of nuclei with apoptotic
morphology. Error bars indicate standard deviations.
|
|
Since the experiments in Fig.
9 showed that Cdk2-dependent
phosphorylation determinants could not dissociate the apoptotic
from
the G
1-to-S cell cycle functional effects of Id3, we also
examined how the transfection experiments in Fig.
10, affected
cell
cycle S phase. As can be seen from Fig.
10B, the profile of
S phase
responses elicited by overexpression of Id3 closely mirrored
the
apoptotic responses (Fig.
10A). This observation further highlights
the
close association between the mechanisms of Id function driving
cell
cycle progression into S phase and those driving apoptosis.
 |
DISCUSSION |
A number of positive regulators of G1 cell cycle
progression, such as E2F (27, 28, 50) and cyclin D1
(24, 37), have recently been reported to display oncogenic
potential in transformation assays of primary embryo fibroblasts.
Indeed, several of the classical, mitogen-responsive proto-oncogenes
exemplified by c-myc, c-fos, and c-jun
are themselves known to be intimately involved in the regulation of
G1 cell cycle progression (40). Since enforced ectopic expression of Id genes has been reported to promote growth in
at least some cell types (2, 16, 25, 35), we reasoned that
they might also be capable of functioning as dominant oncogenes. However, our previous attempts to demonstrate oncogenic potential of Id
genes by transfection of established fibroblast cell lines revealed a
capacity to induce a transformed cell morphology but none of the other
features characteristic of malignant transformation (12).
Moreover, this response could not be further augmented by
cotransfection with other oncogenes (1b). By contrast, using a more sensitive primary embryo fibroblast transformation assay (32), we have now found that transfection of Id genes alone readily induced foci in monolayer cultures but that these failed to
grow out as immortalized lines unless supplied with cooperating functions provided by the antiapoptotic Bcl2 or BclXL gene.
Neither of the two dominant oncogenes, c-myc and
ras, significantly affected the response seen with Id3
alone. Interestingly, Hara et al. (22) previously reported
that the Id1 gene is capable of inducing a small but significant DNA
synthesis response in senescent human fibroblasts when cotransfected
with an attenuated mutant of the simian virus 40 T antigen. Such an
observation is consistent with the ability of enforced overexpression
of Id genes to impart immortalization functions under appropriate
conditions. In this regard, it will be of interest to determine if Id
genes can cooperate with a spectrum of other classes of viral and
cellular oncogenes in immortalization of primary rodent fibroblasts and
how this compares with the responses seen for other G1 cell
cycle regulators, since this might provide important clues about
mechanisms of function.
The observations that Id3-overexpressing REF cell lines could be
readily established by cotransfection with the antiapoptotic Bcl2 and
BclXL oncogenes and that the suppression in CFE induced either by Id3 alone or by the Bcl2 and BclXL genes
themselves could be reversed by cotransfection of the two genes in
combination suggested that Id3 in isolation might induce cell death.
This would account for our inability to propagate Id3-transfected REF cell lines and would also explain the reported difficulties encountered by several laboratories in obtaining cell lines stably expressing high
levels of Id genes (2, 26). Evidently, this is a
cell-type-specific phenomenon, since a number of established cell lines
besides NIH 3T3 cells tolerate high levels of Id gene expression
without discernible effects on cell growth or survival characteristics
(1a, 12, 43). In addition, several of the other
aforementioned positive regulators of early G1 cell cycle
progression which, like Id proteins, function as cooperating
oncoproteins, are also capable of promoting apoptosis under appropriate
growth conditions (30, 31, 44, 51). In evaluating this
functional property of Id proteins, we found that in both transient-
and stable-transfection assays, Id3 promotes apoptosis in
serum-deprived REF cells. In transient assays we also demonstrated a
similar effect of the Id1 and Id2 genes. Besides assessing apoptotic
cells from DAPI-stained nuclear morphology, we also established the
apoptotic nature of Id3-induced cell death in stable transformants by
the independent criteria of cell morphology, ISEL analysis of DNA
fragmentation (59), and detection of membrane
phosphatidylserine by staining with annexin V (38).
Induction of apoptosis by several other positive regulators of
G1 cell cycle progression and by viral and cellular
oncogenes is mediated through either p53-dependent or p53-independent
pathways (57). For example, the prototype c-myc
oncogene induces apoptosis (18), at least in part through a
p53-dependent pathway coupled to induction of the Cdc25A phosphatase
gene (19). Apoptosis in this case is evidently independent
of the ability of this oncogene to activate Cdk activity involved in
cell cycle progression, which is apparently dispensable for Myc-induced
apoptosis (46). Our observation that the extent of
Id3-induced apoptosis in p53
/
MEF cells was comparable
to that seen in wild-type MEF cells argues for a p53-independent
mechanism, perhaps analogous to that used by cyclin D1 (31,
51), which shares many of the functional biological properties of
the Id proteins. However, the cyclin D1 and Id proteins do differ in
one important functional attribute. Whereas cyclin D1 cooperates with
Ras to immortalize primary REF cells (37), Id proteins do
not.
Induction of apoptosis by ectopic overexpression of some ERGs, such as
c-myc (46) and c-jun (8),
is dissociable from the ability of these genes to promote DNA
synthesis. However, two observations in our study suggest a close
coupling between the pathways through which Id proteins promote the
G1-to-S phase cell cycle transition and those which mediate
apoptosis. First, the extent of Id-induced apoptosis in different
experiments was invariably correlated with the relative magnitude of
cell cycle S phase promotion. Second, the Id-expressing cell
populations displaying apoptosis in low-serum medium and those in S
phase were largely coincident, a phenomenon which has been previously reported for E2F-1- and cyclin D1-induced apoptosis (30, 44, 51). This close association between the cell cycle and apoptosis function of Id proteins was further highlighted by the functional properties of the Id3 serine 5 phospho-ablation and phospo-mimickry mutants. Cyclin A- and cyclin E-dependent phosphorylation of the conserved serine 5 residue in the Id3 and Id2 proteins during the
G1-to-S phase transition of the cell cycle alters their
bHLH target protein specificities, and phospho-mimickry mutants of these Id proteins have a severely impaired ability to promote cell
cycling in serum-deprived fibroblasts (13, 20). In the present study, this mutant of Id3 was correspondingly attenuated in its
ability to promote apoptosis. This implies that the unphosphorylated form of Id3 (normally present throughout early G1) but not
the phosphorylated form (persisting from late G1 throughout
S phase of the cell cycle) drives apoptosis. Consistent with this,
prevention of Cdk2-dependent phosphorylation of transfected Id3 by
using the Id3 Ala5 mutant significantly enhanced both the cell cycling and apoptotic responses. A lowering of functional Cdk2 activity and
consequent hypophosphorylation of Id protein in serum-deprived fibroblasts might therefore act to trigger apoptosis induced by overexpression of Id genes. Further experiments will be required to
address this question.
The precise mechanisms through which the different Id proteins function
in G1 cell cycle progression are currently enigmatic. Only
the Id2 protein is reportedly capable of direct functional antagonism
of the Rb, p107, and p130 checkpoint control pocket proteins (22,
25, 33), yet all three of the well-characterized Id family
members are capable of promoting cell growth (2, 13, 16, 25,
35) and are demonstrably involved in G1 progression (3, 23, 43). Several lines of evidence do, however,
implicate bHLH-dependent mechanisms in Id cell cycle function
(43). It is noteworthy, therefore, that cotransfection with
the E47 bHLH gene was almost as efficient as that with the Bcl2 and
BclXL genes in rescuing Id3-induced apoptosis and that the
Pro49 Id3 mutant, which is severely impaired in its ability to
heterodimerize with bHLH partners, was also attenuated in apoptotic and
growth-promoting functions. We speculate that, in addition to
inhibiting bHLH-dependent expression of genes associated with terminal
cell differentiation, Id functions are integrated in the cell cycle
machinery through a common pathway involving bHLH-dependent mechanisms
that regulate G1 progression, apoptosis, and oncogenesis.
 |
ACKNOWLEDGMENTS |
We thank S. Cory for the Bcl2 expression construct, C. Thompson
for the BclXL vector, X.-H. Sun for the E47 vector, H. Land for the ras and c-myc oncogene expression
vectors, and M. R. Schleiss for the LacZ expression vector. We are
also indebted to L. Peterson for assistance with Western analysis, to
G. Craggs and S. Harran for preparation of embryo fibroblasts, and to
R. Deed, G. Peters, and M. Dexter for helpful discussions and for
critical reading of the manuscript.
This work was supported by the UK Cancer Research Campaign.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: CRC Department
of Gene Regulation, Paterson Institute for Cancer Research, Christie Hospital NHS Trust, Wilmslow Rd., Manchester M20 9BX, United Kingdom. Phone: 44 161 4463129. Fax: 44 161 4463109. E-mail:
grgjdn{at}picr.cr.man.ac.uk.
 |
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Mol Cell Biol, April 1998, p. 2371-2381, Vol. 18, No. 4
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