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Mol Cell Biol, August 1998, p. 4698-4706, Vol. 18, No. 8
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Role of Tissue-Specific Transcription Factor LFB3
in a Cyclic AMP-Responsive Enhancer of the Urokinase-Type
Plasminogen Activator Gene in LLC-PK1 Cells
Mazin Khalil
Soubt,
René
Marksitzer,
Pierre-Alain
Menoud,
and
Yoshikuni
Nagamine*
Friedrich Miescher Institute, Basel,
Switzerland
Received 15 January 1998/Returned for modification 7 March
1998/Accepted 21 May 1998
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ABSTRACT |
A cyclic AMP (cAMP)-inducible enhancer in the pig urokinase-type
plasminogen activator gene located 3.4 kb upstream of the transcription
initiation site is composed of three protein-binding domains, A, B, and
C. Domains A and B each contain a CRE (cAMP response element)-like
sequence but require the adjoining C domain for full cAMP
responsiveness. A tissue-specific transcription factor,
LFB3/HNF1
/vHNF1, binds to the C domain. Mutation analyses suggest
that the imperfect CRE and LFB3-binding sequences are required for
tight coupling of hormonal and tissue-specific regulation. CREB and
ATF1 bind to domains A and B, and this binding is enhanced upon
phosphorylation by cAMP-dependent protein kinase (protein kinase A
[PKA]). Analysis in a mammalian two-hybrid system revealed that
CREB/ATF1 and LFB3 interact and that transactivation potential is
enhanced by PKA activation. Interestingly, however, phosphorylation of
CREB at Ser-133 does not contribute to its interaction with LFB3. The
region of LFB3 involved in its interaction with CREB/ATF1 lies, at
least partly, between amino acids 400 and 450. Deletion of this region
removed the ability of LFB3 to mediate cAMP induction of the ABC
enhancer but did not impair its basal transactivation activity on the
albumin promoter. Thus, the two activities are distinct functions of
LFB3.
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INTRODUCTION |
Many proteins are phosphorylated by
cyclic AMP (cAMP)-dependent protein kinase (protein kinase A [PKA]),
leading to the initiation of various cellular events (reviewed in
reference 48). Several transcription factors,
including multiple variants of CREB (44, 49), CREM
(11), and ATF1 (27, 41), have been implicated as
nuclear targets for PKA. CREM and ATF1 are highly related to CREB and
able to dimerize with it (11, 17). All mediate
transcriptional modulation by binding to cAMP response element (CRE)
sites (TGACGTCA). CREB is the best-studied CRE-binding protein and is
the basis of current concepts of CRE regulation (reviewed in reference
33). Two signals are essential for the activation of
a target gene by CREB: a phospho-Ser-133-dependent interaction of CREB
with RNA polymerase II via the coactivator CBP and a
glutamine-rich-domain interaction with TFIID via TAFII130
(7, 12, 36). In most cases, the CRE site is present in the
promoter not as an isolated, single copy but usually as a multimer or
in close proximity to other cis-acting elements (10,
38, 43). The additional cis elements may recruit other
transcription factors, which are often not ubiquitously expressed and,
therefore, provide the basis for tissue-specific gene expression
(reviewed in reference 26).
We have studied urokinase-type plasminogen activator (uPA)
gene regulation in LLC-PK1 cells, a cell line derived from
pig kidney epithelia (28, 31, 47). In these cells, uPA gene expression is regulated by many independent signaling pathways induced,
e.g., by cAMP (47), cytoskeletal reorganization (5, 18,
25), tumor promoter phorbol esters (25), or okadaic acid (24, 35). The cAMP-dependent induction of the uPA gene is cell specific, as cAMP is unable to induce the uPA gene in U937
(6), HeLa (31) or F9 (28) cells. The
pig uPA gene has a cAMP-responsive enhancer located 3.4 kb upstream of
the transcription initiation site and composed of three domains, A, B,
and C. Both the A domain and the B domain contain a CRE-like sequence
(TGACG), which is essential for cAMP induction, but require the
adjoining C domain to confer full cAMP inducibility on a heterologous promoter (31, 47). The C domain is distinct from the A and B
domains in that it contains no CRE. We have purified the protein binding to the C domain and found it to be the pig equivalent of LFB3
(31), also known as vHNF1 (3) or HNF1
(30), which is highly expressed in kidney. LFB3 is related
to the liver-specific transcription factor HNF1
(also termed LFB1);
both factors recognize the same consensus HNF1 sequence in vivo and in
vitro (9). The C domain sequence contains two imperfect HNF1
recognition sequences (47).
In the present study, we characterized the ABC enhancer and the role of
LFB3 in the coupling of tissue-specific and hormonal gene regulation.
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MATERIALS AND METHODS |
Reagents.
12-O-Tetradecanoylphorbol-13-acetate
(TPA) was obtained from Sigma, 8-bromo-cAMP (Br-cAMP) was obtained from
Boehringer Mannheim, and [
-32P]dATP (3,000 Ci/mmol)
was obtained from Amersham. The oligonucleotides used for
electromobility shift assays (EMSA) were as follows (only upper strands
are given): domain A, 5'-AATTCTGTGCCTGACGCACAG-3'; domain B,
5'-AATTCGCCCATGACGAACACTGGG-3'; domain C,
5'-GTGAATGAATAAAGGAATAAATGAATGATTTCACA-3'; somatostatin CRE,
5'-AATTCGCCTCCTTGGCTGACGTCAGAGAGAGAG-3'.
Cell culture.
LLC-PK1 (16), 293, and
COS-1 cells were cultured in Dulbecco's modified Eagle's medium
(Gibco-BRL) supplemented with 10% (vol/vol) fetal calf serum (AMIMED),
0.2 mg of streptomycin per ml, and 50 U of penicillin per ml at 37°C
in a humidified CO2 (5%) incubator. NIH 3T3, F9, and HeLa
cells were cultured in Dulbecco's medium supplemented with 5% calf
serum (NIH 3T3), 5% fetal calf serum (F9), or 3% fetal calf serum and
3% newborn calf serum (HeLa). All cell lines were plated directly on
plastic dishes except F9 cells, which were plated on gelatin-coated
plastic dishes.
Plasmids.
In pTATA (provided by A. E. Sippel), the
firefly luciferase gene is linked to a minimal promoter of the
thymidine kinase gene (
46 to +52) containing only the TATA box and
the transcription initiation site. Derivatives of pTATA containing the
entire sequence or parts of the ABC region at the
AccI-BamHI sites immediately 5' of the TATA box
have been described previously (28). The sequences used to
construct these derivatives are shown in Fig. 1A. In p3AP1-TATA, three tandem repeats
of the collagenase AP1 element were inserted at the same
AccI-BamHI sites of pTATA
(5'-cgacCGGCTGACTCATCACGGCTGACTCATCACGGCTGACTCATCAa-3'). In
pCRE-TATA, the rat somatostatin CRE sequence was used
(5'-cgacCGCCTCCTTGGCTGACGTCAGAGAGAGAGTTTa-3'). Similar
constructs with nonmutated sequences, but with the simian virus
40 early gene promoter, and the pig LFB3 expression vector have been
described previously (31). pALB-luc was derived by subcloning the 190-bp HindIII-BglII fragment
of the rat albumin proximal promoter from pALB-cat (15),
which was provided by M. Yaniv, into
HindIII-BglII sites of pGL2-basic (Promega).
pBGO-ATG-CREB and pBGO-ATG-ATF1 were constructed by cloning the
respective cDNAs amplified with PCR into pBGO-ATG (46),
provided by P. Matthias as SmaI/XbaI fragments.
The following primers were used for PCR: ATF13',
5'-CGTCTAGACTTTCTTAGGAATCAAACAC-3'; ATF15',
5'-ATGGAAGATTCCCACAAGAGTACCAC-3'; CREB3',
5'-CGTCTAGATAATCTGATTTGTGGCAGTAAAGG-3'; and CREB5',
5'-ATGACCATGGAATCTGGAGC-3'.

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FIG. 1.
Significance of the deviation of protein-binding
sequences in the ABC enhancer from respective consensus sequences. (A)
Wild-type and mutated sequences derived from the ABC enhancer located
at 3.4 kb of the pig uPA promoter were cloned in front of a reporter
gene. The mutated sequences are shown in lower case (in reverse type),
the half-palindromic CREs are boxed, and domains A, B, and C are
separated by vertical lines. (B) Different constructs were transiently
transfected into LLC-PK1 cells; 16 h later, cells were
induced by 1 mM Br-cAMP for 6 h and luciferase activity was
measured. (C) pABC-TATA and pABHNF-TATA were transiently transfected
into F9 cells with or without expression vectors for the catalytic
subunit of PKA (CEV) and LFB3. After 16-h transfection, cells were
collected and luciferase activity was measured.
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To prepare an expression vector for His-tagged LFB3, the
EcoRI-
BamHI PCR fragment of the LFB3 coding
region was subcloned
into
XhoI/
BamHI-digested
pMT-PKA (
51), where the
EcoRI end of
the fragment
and the
XhoI end of the vector had been blunt ended
by using
the DNA polymerase I Klenow fragment. pMT-PKA was provided
by T. Wirth.
Different Gal4-LFB3 mutants were constructed by cloning the respective
PCR fragments, digested by
EcoRI/
XbaI, into the
vector
pM (Clontech) in frame at the C terminus of the Gal4 DNA-binding
domain (amino acids [aa] 1 to 147). The following primers were
used
for PCR: for LBF3(1-314) (Gal4-A), M5
(5'-CGGAATTCATGGTGTCCAAGCTCACG-3')
and M6
(5'-CGTCTAGATCACAGCTTCTGCCGGAACGC-3'); for LFB3(315-559)
(Gal4-B, M7 (5'-CGGAATTCGCCATGGACGCCTACAGC-3') and M8
(5'-CGTCTAGATCACCAGGCTTGGAGAGG-3');
for LFB3(394-559)
(Gal4-C), M8 and M9 (5'-CGGAATTCCACAATCTCCTCTCACCTG-3');
for
LFB3(477-559) (Gal4-D), M8 and M10
(5'-CGGAATTCTCCCAGCAGCTGCACAGC-3');
for LFB3(315-393)
(Gal4-E), M7 and M11 (5'-GCTCTAGATCAGCCCGGGTCCAGGCTGGC-3');
for LFB3(315-476) (Gal4-F), M7 and M12
(5'-GCTCTAGATCAGAACTGCACGGGCTGCAG-3').
The full-length
Gal4-LFB3 was constructed by subcloning the
EcoRI/
XbaI
fragment prepared from pcDNA3-LFB3
into the pM vector. pVP16 (Clontech)
and PCR fragments containing the
coding sequences of CREB and
ATF1 were used to generate plasmids
expressing VP16-CREB and VP16-ATF1
fusion proteins. PCR products were
subcloned into pVP16 as
EcoRI/
XbaI
fragments.
Primers used for PCR were CrebEcoRI5'
(5'-CGGAATTCATGACCATGGAATCTGGAGC-3'),
CREB3'
(5'-CGTCTAGATAATCTGATTTGTGGCAGTAAAGG-3'), ATF1EcoRI5'
(5'-CGGAATTCATGGAAGATTCCCACAAGAGTACCAC-3'),
and ATF13'
(5'-CGTCTAGACTTTCTTAGGAATCAAACAC-3').
To change the codon for Ser-133 (TCC) in CREB into Ala (GCC), we
applied the QuickChange site-directed mutagenesis kit (Stratagene)
using two complementary oligonucleotides bearing the following
mutation
(underlined) in the forward oligonucleotide:
5'-CCTTTCAAGGAGGCCT
GCCTACAGGAAAATTTTG-3'.
The
resulting plasmid was called pVP16-CREB (S133A). pVP16-CREB
and
pVP16-CREB (S133A) were further used to generate plasmids
expressing a
CREB mutant lacking 71 C-terminal amino acids corresponding
to the
basic leucine zipper region. For this purpose, pVP16-CREB
and
pVP16-CREB(S133A) were first digested with
HinfI, followed
by blunt-end formation using the DNA polymerase I Klenow fragment,
and
then digested with
EcoRI to recover deleted CREB cDNA. The
fragments were then cloned into pVP16 digested with
EcoRI/
SmaI,
resulting in pVP16-CREB

and
pVP16-CREB

(S133A), respectively.
To generate a vector expressing LFB3 tagged with the hemagglutinin (HA)
epitope at its N terminus, we first ligated a
KpnI/
EcoRI
double-stranded oligonucleotide
containing the sequence encoding
the HA epitope (sense strand
oligonucleotide, 5'-CCCACCATGGCTTACCCATACGATGTTCCAGATTACGCTG-3')
into
KpnI/
EcoRI-digested pcDNA3
(Invitrogen), resulting in pcDNA3-HA.
Subsequently, we cloned LFB3 cDNA
into pcDNA3-HA using
EcoRI/
XbaI
restriction
sites. pcDNA3-HALFB3

(400-450) was constructed by
ligating two LFB3
PCR fragments comprising the sequences coding
for aa 1 to 400 and 450 to 559 into pcDNA3-HA digested with
EcoRI/
XbaI.
The following primers were used for PCR amplification: for LFB3(1-400),
M5 and 3del2a (5'-AGGTGAGAGGAGATTGTG-3'); for LFB3(450-559),
M8
and 5del2a (5'-AACTCCTCCCAAGCTCAG-3'). An expression
vector for
His-tagged LFB3

(400-450) was constructed by
linking a PCR fragment
generated from pcDNA3-HALFB3

(400-450)
with M5 and M8 as primers
to pQE-30 (Qiagen). All constructs were
verified by sequencing.
The expression vector for the catalytic subunit of PKA (pCEV) was
provided by S. McKnight, the pJ6-ATF1 expression vector
was provided by
P. Verde, and the pmcCREB vector was provided
by G. Schütz.
Transient transfection assays.
For transient transfection
experiments, cells were seeded and transfected as described elsewhere
(28). In brief, cells were transfected by calcium
phosphate-mediated precipitation and treated 20 h later with 1 mM
Br-cAMP for 6 h. Where cells were induced by coexpression of the
catalytic subunit of PKA, they were collected after 20 h of
transfection. Cell extracts were assayed for luciferase activity as
described elsewhere (31) by using a luminometer (Autolumat
LB 953; Berthold) or for chloramphenicol acetyltransferase (CAT)
activity by using a CAT-ELISA assay kit (Boehringer Mannheim).
Nuclear extracts and EMSA.
Nuclear extracts were prepared
from LLC-PK1 cells, and EMSA were performed as previously
described (25). Oligonucleotide probes were radiolabeled by
using the DNA polymerase I Klenow fragment and
[
-32P]dATP. Supershift experiments using anti-ATF1
(FI-1; Santa Cruz), anti-CREB (X-12; Santa Cruz), or anti-glutathione
S-transferase (Z.5; Santa Cruz) antibodies were performed as
described elsewhere (8). Briefly, nuclear extracts were
incubated for 4 h at 4°C with 2 µl of the appropriate
antiserum prior to the addition of the radioactive probe. Thereafter,
samples were run on a 0.25× Tris-borate-EDTA gel at 200 V for 2 h
and exposed to Kodak X-Omat AR film with an intensifying screen at
70°C.
EMSA-Western analysis.
Proteins binding to specific DNA
sequences were detected by a method which is a composite of EMSA and
Western blot (39). Nuclear extracts (25 µg of protein)
from LLC-PK1 cells were incubated with 10 pmol of
nonradioactive double-stranded oligonucleotides corresponding to domain
A or B or somatostatin CRE for 30 min at room temperature in binding
buffer as above. Samples were run on 0.25× Tris-borate-EDTA at 200 V
for 2 h. Proteins were blotted and analyzed for CREB/ATF1 with
anti-human CREB rabbit antibody or anti-human ATF1 sheep antibody
(Upstate Biotechnology).
Coprecipitation assays.
Recombinant LFB3 and
LFB3
(400-450) proteins with six N-terminal histidine residues were
prepared by transformation of BL21(DE3)pLysS and M15 bacteria (Qiagen),
respectively, with the corresponding expression vectors and
subsequently purified as described elsewhere (50). In
vitro-translated ATF1 and CREB were obtained by use of pBGO-ATG-ATF1 or
pBGO-ATG-CREB, respectively, as template in the TNT reticulocyte lysate
system (Promega). Ten microliters of in vitro-translated
[35S]methionine-labeled ATF1 or CREB was incubated with
His-tagged LFB3 or LFB3
(400-450) protein coupled to Ni-chelating
Sepharose (Pharmacia) in Dignam buffer D (20 mM HEPES [pH 7.9], 20%
glycerol, 100 mM KCl) for 2 h at 4°C. Samples were then washed
three times with 20 mM HEPES (pH 7.9)-20% glycerol-500 mM KCl-0.5%
Triton X-100-10 mM imidazole and once with TTBS (10 mM Tris HCl [pH
7.6], 50 mM NaCl, 0.2% Tween 20), eluted in sodium dodecyl sulfate
(SDS) sample buffer, and subjected to SDS-polyacrylamide gene
electrophoresis. Radioactive bands were visualized by fluorography.
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RESULTS |
Coupling of hormonal and tissue-specific gene regulation.
To
characterize the ABC enhancer, we introduced a series of mutations
(Fig. 1A) and cloned these mutated enhancers in front of a luciferase
reporter gene with a minimal thymidine kinase promoter. The sequences
in the ABC domains responsible for cAMP induction are imperfect CRE and
HNF1-binding sequences. First, we examined the significance of their
deviation from the consensus CRE and HNF1-binding sequences. When the
imperfect CRE sequence was converted to the consensus CRE sequence,
mutated AB domains (termed A*B*) mediated cAMP inducibility even in the
absence of the adjoining C domain. The conversion of the domain C
sequence to the consensus HNF1-recognition sequence (termed ABHNF)
led to a strong increase in basal promoter activity (Fig. 1B).
Involvement of LFB3 in the activity of the ABC enhancer was confirmed
by cotransfection in F9 cells lacking endogenous LFB3.
We used the
catalytic subunit of PKA to induce these cells, since
undifferentiated
F9 cells are not responsive to cAMP (
17). As
shown in Fig.
1C, cotransfection of an LFB3 expression vector
had no effect on the
ABC enhancer unless there was a cAMP signal
but strongly enhanced
luciferase expression from the ABHNF-driven
promoter without a cAMP
signal. These results suggest that the
imperfect CRE sequences in
domains A and B and the imperfect HNF1-binding
sequences in domain C
are required for tight coupling of hormonal
and tissue-specific
regulation; the ABC enhancer is active only
in the presence of both a
cAMP signal and LFB3.
The ABC enhancer does not mediate TPA-dependent gene
induction.
The CRE-like elements in the A and the B domains differ
in only 1 and 2 nucleotides, respectively, from the consensus AP1 site
TGA(C/G)TCA, also called the TPA response element (TRE). This sequence
similarity prompted us to ask if the wild-type ABC enhancer or the
mutated ABC enhancer AP1C (Fig. 1A), where CRE-like sequences in the AB
domains are converted to the consensus AP1 sequence, could mediate TPA
induction. As shown in Fig. 2, TPA treatment led to only modest induction (1.5-fold) from the ABC or AP1C
construct. This induction is comparable to that for the empty vector
pTATA and, therefore, not significant. In contrast, a construct with
three AP1-binding sites was approximately threefold inducible. Thus,
the ABC enhancer cannot mediate TPA induction. Conversion of CRE-like
elements into perfect AP1 sites did not make the cAMP-inducible
enhancer TPA inducible. This suggests that LFB3 cooperates specifically
with the AB-binding proteins but not with AP1 factors.

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FIG. 2.
Specificity of LFB3 cooperation. LLC-PK1
cells were transfected with different reporter constructs and 16 h
later induced either with 1 mM Br-cAMP or with 100 ng of TPA per ml for
6 h. Cells were then collected, and luciferase activity was
measured. pAP1-TATA contains three copies of the AP1 sequence from the
collagen gene. In the pAP1C-TATA construct, CRE-like sequences were
converted to AP1. For details of these constructs, see Materials and
Methods. Luciferase activity was measured as for Fig. 1C, and values
are plotted as fold induction relative to noninduced cells.
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ATF-1 and CREB interact with the AB domains.
Several
transcription factors have been reported to mediate cAMP-dependent gene
activation, of which the best studied so far are CREB and ATF1. Using
recombinant CREB protein, Nichols et al. (37) showed that
CREB can bind both A and B domains and that the binding is enhanced by
treatment with PKA. We examined the possible involvement of these
proteins by testing the effects of antibodies against these molecules
in EMSA using nuclear extracts from LLC-PK1 cells. As shown
in Fig. 3A, oligonucleotides of domain A
and B sequences, like that of the somatostatin CRE sequence, gave rise
to single bands which could be competed by excess cold oligonucleotide
of the same sequence. Inclusion of anti-CREB-specific antiserum in
the binding reaction with domain A and B oligonucleotides produced a
band slower than the main band. Inclusion of anti-ATF1-specific antiserum produced two slow-migrating bands. In contrast, a nonspecific antiserum did not change the migration pattern. This suggests that the
retarded bands produced by the anti-CREB- and anti-ATF1 antisera are
specific and that CREB and ATF1 can bind both A and B domains. The two
retarded bands produced by the anti-ATF1-antiserum may indicate
different ATF1-containing complexes: an ATF1 homodimer and a
heterodimer with another protein. To further confirm that CREB and ATF1
bind to both A and B domains, we performed EMSA-Western blot analysis
(39). As shown in Fig. 3B, both CREB and ATF1 were detected
in fractions that bound to domains A and B as well as somatostatin CRE.

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FIG. 3.
Involvement of ATF1 and CREB in ABC enhancer-mediated
cAMP induction. (A) EMSA. Nuclear extracts (NE) prepared from
LLC-PK1 cells were tested for binding to oligonucleotides
containing sequences from the somatostatin promoter CRE region or from
domain A or B. Radioactive oligonucleotides indicated at the bottom of
each panel were incubated without ( ) or with nuclear extracts plus
anti-ATF1 ( -ATF1) antibody, anti-CREB antibody, nonspecific
antiserum (immunoglobulin G) (ns. IgG), or a 100-fold excess of cold
oligonucleotide of the same sequence. Reaction products were
fractionated in nondenaturing acrylamide (5%) gel electrophoresis and
exposed in a PhosphorImager or to X-Omat X-ray film with an
intensifying screen at 70°C for 4 days for the A and B probes and 3 days for the somatostatin CRE probe. (B) Detection of CREB and ATF1 by
blotting EMSA gels. Nuclear extracts (25 µg of protein) from
LLC-PK1 cells were incubated in the absence of
oligonucleotide (control) or with oligonucleotides corresponding to
domain A or B or somatostatin CRE or a nonspecific oligonucleotide (ns)
and separated by nondenaturing gel electrophoresis. Proteins were
analyzed by immunoblotting with polyclonal antisera to CREB and ATF1.
Only regions corresponding to the main complex are shown. (C)
Comparisons of different cell lines for ABC enhancer-mediated cAMP
induction. Cell lines were transfected with 1 µg of pABC-TATA
together with 0.5 µg (or 0.1 µg for COS-1 and NIH 3T3 cells) of
pRSV-LFB3 and/or 0.5 µg of pCEV. After 16-h transfection, cells were
collected and luciferase activity was measured. Assays were done in
duplicate, and mean values are shown with error bars.
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To date, ATF1 has been found in all cell lines examined (
40,
41). We examined ABC enhancer-mediated cAMP induction in
NIH 3T3,
COS-1, and 293 cell lines; 293 has been shown to express
ATF1
(
41). In all cell lines, the ABC enhancer was inducible
when
the catalytic subunits of PKA and LFB3 were cotransfected,
suggesting
that the proteins binding to domains A and B are ubiquitous
(Fig.
3C).
Binding of ATF1 and CREB to domains A and B is regulated by
PKA-mediated phosphorylation.
We addressed the role of the
phosphorylation of ATF1 and CREB by PKA with respect to their affinity
for CRE sites. Nuclear extracts from LLC-PK1 cells were
treated with PKA, and DNA-binding activity was measured by EMSA in the
presence of specific antisera against CREB and ATF1 (Fig.
4). Treatment with PKA resulted in increased DNA-binding activities of CREB and ATF1, suggesting that the
binding of each protein is increased upon phosphorylation. In contrast,
binding of ATF1 or CREB to consensus CRE was not affected by PKA
treatment. This result is in agreement with previous reports that
asymmetric CREs are only weakly bound by CREB unless they are
phosphorylated, whereas symmetrical consensus CREs also have a high
affinity for nonphosphorylated forms of CREB (37).

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FIG. 4.
Increased DNA-binding activity of nuclear extracts (NE)
from LLC-PK1 cells by PKA treatment. Nuclear extracts were
treated where indicated with 100 U of the catalytic subunit of PKA for
90 min at 37°C. Afterwards, samples were incubated with or without 2 µg of the indicated antibodies (Ab) for 4 h at 4°C and assayed
for DNA-binding activity as described in the legend to Fig. 3. The gels
were dried and exposed to X-Omat AR film for 1 day for the somatostatin
CRE probe and 4 days for the domain B probe.
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Interaction between ATF1 or CREB and LFB3.
Next, we examined
the nature of the cooperation between the AB and C domains by inserting
between them 5 or 10 nucleotides, corresponding to a half or a full
turn, respectively, of the DNA helix (Fig. 1A). The insertion of 5 nucleotides (AB5C) reduced the inducibility to about 30% of the wild
type (Fig. 5). Insertion of 10 nucleotides (AB10C) reduced the inducibility even further. These
results suggest that the proximity and angular orientation of these
proteins, LFB3 and the proteins binding to the AB domains, are
important for their functional cooperation in mediating cAMP induction
and indicate some form of physical interaction.

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FIG. 5.
Interaction of LFB3 with CREB and ATF1. Effects of the
insertion of 5 or 10 nucleotides between domains A, B, and C on ABC
enhancer-mediated cAMP inducibility. Luciferase constructs (1 µg)
were induced either with 1 mM Br-cAMP or by cotransfecting 0.5 µg of
pCEV, a vector expressing a catalytic subunit of the PKA. Assays were
done in duplicate, and mean values are shown with error bars. For
details of the different constructs, see Materials and Methods and Fig.
1A.
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We examined this interaction by the mammalian two-hybrid system
(Clontech) in which the interaction was measured as CAT reporter
gene
activity in LLC-PK
1 cells. For this, we generated a panel
of LFB3 deletion mutants fused to the DNA-binding domain of the
yeast
transcription factor GAL4 (Fig.
6A). As
interaction partners,
CREB and ATF1 were fused to the viral VP16
transactivation domain.
As shown in Fig.
6B, GAL4-LFB3(1-559) did not
mediate PKA stimulation
either with or without coexpression of
VP16-CREB or VP16-ATF1.
However, when the carboxyl-terminal half of
LFB3 [GAL4-LFB3(315-559)]
was used, CAT expression was stimulated by
the PKA signal and
was further enhanced by coexpression of VP16-CREB or
VP16-ATF1.
A possible reason that the full-length LFB3 did not mediate
the
interaction is that the accessibility of the LFB3 region
responsible
for CREB/ATF1 binding was affected by the fusion of the
GAL4 DNA-binding
domain.

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FIG. 6.
Analysis of the LFB3 molecule in a mammalian two-hybrid
system for interaction with CREB and ATF1. (A) Schematic representation
of Gal4-LFB3 and its deletion derivatives. DD, dimerization domain;
POU, POU-specific domain; Pro-Glu, proline- and glutamine-rich
activation domain. HA-tagged LFB3 (400-450) is diagrammed below. (B)
CREB and ATF1 interact with the C terminus of LFB3. The CAT reporter
gene construct pG5CAT (1 µg) was cotransfected into
LLC-PK1 cells with vectors expressing different Gal4-LFB3
deletion mutants and with either pVP16, pVP16-CREB, or pVP16-ATF1 (1 µg each). cAMP signaling was triggered by coexpressing the catalytic
subunit of PKA (pCEV, 0.5 µg). CAT activity was measured as described
in Materials and Methods. (C) Mapping of the LFB3 site interacting with
CREB and ATF1. The CAT reporter gene construct pG5CAT was cotransfected
into LLC-PK1 cells with vectors expressing different
Gal4-LFB3 deletion mutants and with either pVP16, pVP16-CREB, or
pVP16-ATF1. cAMP signaling was triggered by coexpressing the catalytic
subunit of PKA (pCEV). CAT activity was measured as described above.
|
|
Further dissection of the carboxyl terminus showed that the construct
Gal4-LFB3(315-476), which does not contain the transactivation
domain
of LFB3, is able to mediate PKA-enhanced interaction (Fig.
6C). The
shorter construct Gal4-LFB3(315-393) failed to bind CREB
or ATF1,
suggesting that the interaction region lies between aa
393 and 476 of
LFB3. In agreement with this result, Gal4-LFB3(394-559)
showed
interaction with CREB and ATF1. Interestingly, CAT expression
mediated
by the construct Gal4-LFB3(477-559), which contained
only the
transactivation domain, could be induced by PKA (see
Discussion).
Phosphorylation of CREB at Ser-133 is not important for interaction
with LFB3.
The CREB protein belongs to the basic leucine zipper
group of transcriptional regulators. The basic leucine zipper motif is a prerequisite for dimerization and DNA binding (2, 20). It
also mediates protein-protein interaction with the oncoprotein Tax, a
product of the human T-cell leukemia virus type 1 (1). Further, CREB harbors two distinct activation domains, a glutamine-rich constitutive activator (Q2) and a kinase-inducible domain, which function synergistically to stimulate target gene expression (reviewed in reference 32). PKA induces CREB phosphorylation
at Ser-133 in the kinase-inducible domain, which then recruits the RNA
polymerase II complex via the coactivator CBP (22).
To examine the role of Ser-133 and the bZIP motif in the interaction
with LFB3, we introduced two kinds of mutations into
CREB: the first
converting Ser-133 to Ala-133 [CREB(S133A)] and
the second
deleting 71 amino acids at the carboxyl terminus encompassing
the basic
leucine zipper region (CREB

). We tested these mutations
in a
mammalian two-hybrid system and found that mutant CREB(S133A)
behaved
similarly to wild-type CREB with respect to PKA-enhanced
LFB3 binding,
suggesting that Ser-133 is not relevant for this
interaction (Fig.
7). Additionally, we found that deletion
of
the basic leucine zipper region of CREB abolished PKA-enhanced
interaction with LFB3 (Fig.
7). This suggests that CREB has to
be a
dimer to interact with LFB3 or that the basic-leucine zipper
region is
directly involved in the interaction with LFB3.

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|
FIG. 7.
Unimportance of CREB Ser-133 in LFB3 binding. Two CREB
mutants, a Ser-to-Ala mutant (CREBS133A) and a mutant lacking the
leucine zipper (CREB ) (0.5 µg each), were cotransfected into
LLC-PK1 cells together with a vector expressing
Gal4-LFB3(315-559) (0.5 µg) and the CAT reporter gene construct
pG5CAT (1 µg). cAMP signaling was triggered by coexpression of the
catalytic subunit of PKA (pCEV, 0.5 µg). CAT activity was measured as
described in Materials and Methods.
|
|
As PKA enhanced the interaction of CREB with LFB3 without involving
Ser-133 of CREB, we examined the possibility that PKA
phosphorylates
and activates LFB3. For this purpose, we carried
out an in vitro PKA
assay using HA-tagged LFB3 as substrate. We
found that, in contrast to
CREB, which was avidly phosphorylated,
LFB3 was not phosphorylated in
vitro by PKA or by cell extracts
from cAMP-stimulated
LLC-PK
1 cells (data not shown). It is possible
that PKA
indirectly activates LFB3 or CREB by phosphorylating
a third protein,
which in turn activates LFB3 or CREB and thus
enhances the interaction
between LFB3 and CREB. Cotransfection
of vectors expressing HA-tagged
LFB3 and either CREB or ATF1 in
293 cells followed by
immunoprecipitation and immunoblotting with
antiserum to either CREB or
ATF1 did not lead to the detection
of these proteins in the
immunoprecipitates (data not shown).
This may suggest the participation
of the third protein.
Separation of CREB or ATF1 cooperating activity and basal enhancer
activity of LFB3.
In order to verify the role of the region
comprising aa 393 to 476 of LFB3 in the cooperation, we generated an
internal deletion of aa 400 to 450 to produce LFB3
(400-450). We
compared the effects of HA-tagged LFB3 and LFB3
(400-450) on cAMP
induction of the ABC enhancer. In transient transfection assays with
LLC-PK1 cells using pABC-TATA as a luciferase reporter gene
construct, we found that, in contrast to wild-type LFB3, increasing
amounts of the LFB3
(400-450) expression vector did not lead to
enhancement of cAMP induction. This result confirms that the region aa
400 to 450 is necessary for LFB3 to cooperate with CREB and ATF1 and mediate the cAMP signal (Fig. 8). To
prove that the deletion of aa 400 to 450 affects only the mediation of
the cAMP signal and not the transactivation capacity of transcription
factor LFB3, we carried out transient transfection assays in 293 cells,
where the level of endogenous LFB3 is very low. We compared two
luciferase reporter constructs: the cAMP-sensitive construct pABC-TATA
and the cAMP-independent pAlb-Luc, which is derived from the albumin promoter and bears a consensus binding site for LFB1 and -3. LFB3 has
been shown to act as a basic (i.e., without additional signal) transactivation factor and activate the albumin promoter
(42). It is clear that LFB3
(400-450) was as active as
LFB3 in activating the albumin promoter (Fig.
9A), while LFB3
(400-450) failed to mediate cAMP induction of the ABC enhancer (Fig. 9B). We also confirmed
the importance of aa 400 to 450 in LFB3 for the interaction with CREB
and ATF1 by coprecipitation analysis. As shown in Fig. 9C, CREB and
ATF1 bound to His-LFB3 but not to His-LFB3
(400-450). These results
suggest that CREB and ATF1 cooperating activities and basal
transactivation activity are ascribable to distinct regions of LFB3 and
that they are separate activities.

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FIG. 8.
Inability of LFB3 (400-450) to mediate cAMP-dependent
induction of the ABC enhancer in LLC-PK1 cells.
LLC-PK1 cells were transfected with pABC-TATA (0.5 µg) as
luciferase reporter gene construct, along with increasing amounts (0, 50, and 100 ng) of empty vector or vectors expressing
HALFB3 (400-450) or HALFB3. cAMP signaling was triggered by adding 1 mM Br-cAMP (6 h) before luciferase activity was measured.
|
|

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FIG. 9.
Distinct functions of LFB3 for basal transactivation and
mediation of cAMP induction. (A) LFB3 (400-450) retains its
transactivation capacity. 293 cells were transiently transfected with
the cAMP-independent reporter gene expression vector pAlb-Luc (0.5 µg) together with vectors encoding either HALFB3 or
HALFB3 (400-450) (50 ng). Luciferase activity was measured and
expressed as for Fig. 3B. (B) LFB3 (400-450) is unable to mediate
cAMP induction. 293 cells were transiently transfected with the
cAMP-dependent reporter gene expression vector pABC-TATA (0.5 µg)
together with vectors encoding either HALFB3 or HALFB3 (400-450) (5 ng). cAMP signaling was triggered by coexpressing the catalytic subunit
of PKA (pCEV, 0.5 µg). Luciferase activity was measured and expressed
as described above. (C) CREB and ATF1 coprecipitate with LFB3 but not
with LFB3 (400-450). In vitro [35S]methionine-labeled
CREB or ATF1 was incubated with empty Ni-chelating Sepharose beads
(Pharmacia) (control) or with beads coupled with His-tagged LFB3 or
LFB3 (400-450) protein. After a wash and elution, samples were
subjected to SDS-polyacrylamide gel electrophoresis. The bands were
visualized by fluorography.
|
|
 |
DISCUSSION |
The ABC enhancer of the pig uPA promoter consists of three
protein-binding domains and mediates cAMP induction. The presence of
all three domains is required for full inducibility. We showed previously that LFB3 binds to the C domain and cooperates with the
proteins binding to domains A and B (28, 31). In the present study, we report that ATF1 and CREB bind to the AB domains. However, we
cannot exclude the possibility that other CREB/ATF1 family members bind
to these domains, since the main protein-DNA complex was not completely
supershifted by antibodies against CREB and ATF1 (Fig. 3A). The ABC
enhancer was inducible in all cell lines tested when LFB3 was
coexpressed, suggesting that the ubiquitous ATF1 and CREB are likely to
be the proteins mediating cAMP induction of the ABC enhancer (Fig. 3C).
We characterized the ABC enhancer by creation of several mutations. A
5- or 10-nucleotide insertion between domains AB and the LFB3-binding
domain C substantially reduced inducibility. Therefore, both close
proximity and a certain angular orientation between LFB3 and AB
domain-binding proteins are required for their cooperativity. These
requirements suggest a physical interaction; indeed, mammalian
two-hybrid systems and coprecipitation studies showed that CREB and
ATF1 bind to LFB3 (Fig. 6 and 9).
The consensus CRE sequence differs from the TRE sequence only in 1 nucleotide (34), and the transcription factors binding to
TREs, the AP1 factors, are structurally related to CREB and ATF1,
having a basic leucine zipper domain as DNA-binding motif (19). However, AP1 factors cannot heterodimerize with CREB
(4) or with ATF1 (14, 29). We tested the possible
interaction of LFB3 with AP1 factors by converting the imperfect CRE
sites into consensus AP1-binding sites. However, no significant
induction by TPA was detected on such a construct. Therefore, the
cooperative role of LFB3 is specific for the cAMP induction of the ABC
enhancer (Fig. 2). Thus, LFB3 interacts most likely with an area of
CREB or ATF1 that is not present in AP1 factors.
The deviation of protein-binding sequences in the ABC enhancer from the
respective consensus sequences is instrumental in ensuring the tight
regulation of uPA gene expression in a hormone-dependent and
tissue-specific manner. The AB domains alone do not allow cAMP
induction, and the C domain alone does not lead to enhanced basal
activity. However, if each binding sequence is converted to the
consensus element, the A*B* domains without the C domain can mediate
cAMP induction and the ABHNF shows considerable basal activity, thus
weakening both tissue specificity and hormone dependency (Fig. 1). The
most likely explanation for the loss of tissue specificity with A*B*C
is that, while CREB/ATF1 binds only weakly to the imperfect CRE
sequence, it binds to the consensus CRE with a higher affinity. It is
known that PKA-induced phosphorylation influences two aspects of CREB
regulation: DNA binding and transactivation. CREB binds to the
consensus CRE with a high affinity without being phosphorylated (37), and the role of its phosphorylation lies mainly in
recruitment of the cofactor CBP (7). In fact, we could show
that the binding of CREB or ATF1 to the A and B domains is increased
upon phosphorylation by PKA but that consensus CREs are bound by CREB
and ATF1 independently of PKA treatment (Fig. 4). Similar results with
purified CREB were described earlier (37). Binding of LFB3
to the consensus LFB1/3 sequence is stronger than that to the domain C
sequence (data not shown). Cooperation between LFB3 and CREB or ATF1
may lead to stronger binding of the whole complex to the ABC enhancer than binding of the individual factors to their binding sites. Therefore, the imperfect consensus sequences in the ABC enhancer are
necessary for the weak binding of the individual transcription factors
to their binding sites, ensuring the coupling of hormonal and
tissue-specific gene regulation. Only upon formation of the whole
complex with LFB3 and CREB or ATF1 after phosphorylation by PKA, is the
binding of the transcription factors strong and transcription is
initiated.
Experiments using the mammalian two-hybrid system showed
that PKA enhances the interaction between LFB3 and CREB or ATF1 (Fig. 6). The influence of PKA on gene expression is mediated by
phosphorylation of various transcription factors, including CREB, ATF1,
and CREM (13, 23). Phosphorylation of CREB at Ser-133 by PKA
results in increased transactivation activity, paralleled by induced
association with CBP. CBP interacts with TFIIB, thus connecting CREB to
the basal transcriptional machinery (12, 22). Our
observation that Ser-133 is not relevant for CREB/LFB3 interaction
(Fig. 7) supports the notion that this residue has to remain accessible for CBP. In addition, cell-free phosphorylation experiments showed that
LFB3 is not the direct target of PKA. It remains to be seen whether
LFB3 is phosphorylated in vivo upon stimulation with agents leading to
PKA activation. In the two-hybrid system, we observed that
Gal4-LFB3(477-559), which is composed of the transactivation domain of
LFB3, could activate the reporter gene when the PKA catalytic subunit
was coexpressed. Currently, we are examining the possibility that the
transactivation domain of LFB3 is indirectly phosphorylated in vivo by
PKA or interacts with a protein whose activity is modulated by PKA. The
potential involvement of another protein in the hormonal or
tissue-specific regulation of the uPA gene might be supported by the
fact that an attempt to coimmunoprecipitate LFB3 with either CREB or
ATF1 was not successful (data not shown).
The mammalian two-hybrid system showed that the region aa 393 to 476 of
LFB3 is involved in the interaction with CREB or ATF1. The importance
of this region for mediating cAMP induction was confirmed in transient
transfection assays. In contrast to full-length LFB3, LFB3 lacking aa
400 to 450 failed to mediate cAMP induction of the ABC enhancer (Fig. 8
and 9B). Interestingly, the capacities of the two proteins LFB3 and
LFB3
(400-450) to enhance basal transcription activity were
comparable (Fig. 9A), indicating that cooperation with CREB or ATF1 and
basal transactivation activity are two distinct functions of LFB3
mapping to two different regions of the protein. A corresponding region
(aa 280 to 440) of HNF1
(LFB1), the LFB3-related, liver-enriched
transcription factor, has recently been reported to be involved in
protein-protein interaction with another liver-enriched transcription
factor, HNF4 (21). In contrast to our observation, where
LFB3 cooperates with CREB or ATF1 in positively mediating cAMP signals
on the ABC enhancer, this region of HNF1
mediates suppression of
HNF4-dependent genes without directly binding to DNA. HNF4 is a
liver-enriched transcription factor of the steroid hormone receptor
superfamily (45), distinct from basic leucine zipper type
transcription factors such as CREB. It would be interesting to see
whether the region aa 400 to 450 of LFB3 cooperates with transcription
factors other than CREB and ATF1.
 |
ACKNOWLEDGMENTS |
Mazin Khalil Soubt and René Marksitzer contributed equally
to this work.
We thank P. Sassone-Corsi and M. Green for helpful discussion; P. King,
P. Matthias, and P. Caroni for critical reading of the manuscript; and
Birgitta Kiefer for excellent technical assistance.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Friedrich
Miescher Institute, P.O. Box 2543, CH-4002 Basel, Switzerland. Phone:
41-61-697-6669 or -697-4499. Fax: 41-61-697-3976. E-mail:
nagamine{at}fmi.ch.
Present address: Institut d'Histologie et d'Embryologie
Générale, Faculté des Sciences, CH-1705 Fribourg,
Switzerland.
 |
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Mol Cell Biol, August 1998, p. 4698-4706, Vol. 18, No. 8
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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