Mol Cell Biol, August 1998, p. 4772-4782, Vol. 18, No. 8
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Department of Biological Science and Technology, Science University of Tokyo, Noda-shi, Chiba 278, Japan
Received 2 January 1998/Returned for modification 15 May 1998/Accepted 26 May 1998
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ABSTRACT |
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Fibronectin (FN) is an extracellular matrix protein that connects
the extracellular matrix to intracellular cortical actin filaments
through binding to its cell surface receptor,
5
1, a member of the
integrin superfamily. The expression level of FN is reduced in most
tumor cells, facilitating their anchorage-independent growth by still
unclarified mechanisms. The cDNA clone encoding G-rich sequence binding
protein G10BP-1, which is responsible for repression of the rat FN
gene, was isolated by using a yeast one-hybrid screen with the G10
stretch inserted upstream of the HIS3 and lacZ
gene minimal promoters. G10BP-1 comprises 385 amino acids and contains
two basic regions and a putative zipper structure. It has the same
specificity of binding to three G-rich sequences in the FN promoter and
the same size as the G10BP previously identified in adenovirus E1A- and
E1B-transformed rat cells. Expression of G10BP-1 is cell cycle
regulated; the level was almost undetectable in quiescent rat 3Y1 cells
but increased steeply after growth stimulation by serum, reaching a
maximum in late G1. Expression of FN mRNA is inversely
correlated with G10BP-1 expression, and the level decreased steeply
during G1-to-S progression. This down regulation was
strictly dependent on the downstream GC box (GCd), and base
substitutions within GCd abolished the sensitivity of the promoter to
G10BP-1. In contrast, the level of Sp1, which competes with G10BP for
binding to the G-rich sequences, was constant throughout the cell
cycle, suggesting that the concentration of G10BP-1 relative to that of
Sp1 determines the expression level of the FN gene. Preparation of
glutathione S-transferase pulldowns of native proteins from
the cell extracts containing exogenously or endogenously expressed
G10BP-1, followed by Western blot analysis, showed that G10BP-1 forms
homodimers through its basic-zipper structure.
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INTRODUCTION |
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Fibronectin (FN) is a large
glycoprotein of the extracellular matrix that binds to its cell surface
receptor,
5
1, a member of the integrin superfamily, as a dimer
(2, 15, 39). FN consists of multiple rodlike domains, and
each domain binds to a component of the extracellular matrix such as
collagen and heparin and to its receptor (16). The
cytoplasmic domain of the receptor binds to bundles of actin filaments
known as stress fibers indirectly through binding to the attachment
proteins (14). The binding of FN to its receptor at
so-called focal contact sites therefore connects the cytoskeleton with
the extracellular matrix (3, 17, 21, 39), governing cell
shape, adhesion, and movement. FN is also involved in the regulation of
cell proliferation and differentiation through organization of the
extracellular matrix and cytoskeleton (7, 15).
The expression level of FN is closely linked to the growth potential of cells. The level increases when cells cease growing, and senescent cells inevitably express FN at high levels (11, 28, 33). On the contrary, FN expression is greatly inhibited upon neoplastic transformation (10, 20, 35), and most tumor cells express very low levels of FN, resulting in disorganization of the cytoskeleton and extracellular matrix, which facilitates tumor metastasis.
Rat 3Y1-derivative cell line XhoC, transformed by the adenovirus E1A
and E1B genes, also expresses a very low level of FN (35).
Analysis of transcription factors in XhoC cells revealed an adenovirus
E1A-inducible negative regulator, G10BP, which binds to three G-rich
sequences in the FN promoter (43). One of the sequences,
located at positions
239 to
230, consists of only G residues (G10
stretch), and the other two, located at positions
105 to
95 and
54 to
44, consist of the G10 stretch with one internal C residue
insertion (GC boxes). Transcription factor Sp1 also binds to these
G-rich sequences. Transcription of an FN promoter-CAT (chloramphenicol
acetyltransferase) fusion gene in HeLa cell extract, which contains
abundant Sp1, was inhibited by the addition of purified G10BP. The
downstream GC box (GCd) seemed to be the most critical site, and G10BP
inhibited FN promoter activity primarily by excluding the binding of
Sp1 to this site (43). The human FN promoter also contains
multiple G-rich sequences (5).
In the present study, to correlate the function of G10BP with its structural features and control of expression, cDNA clones whose protein products bind to the G10 stretch were searched for by using the yeast one-hybrid system (3, 40). A tester strain containing the HIS3 and lacZ genes fused to the G10 stretch and minimal promoters was transformed with a pGAD-XhoC cell cDNA library, which directs the synthesis of fusion proteins between the cDNA-encoded polypeptides and the transcriptional activation domain of Gal4. A positive clone that was isolated encodes a G-rich sequence binding protein with a putative zipper structure, and the protein was designated G10BP-1. G10BP-1 comprises 385 amino acids and has properties identical to those of the previously identified G10BP protein with respect to specificity of binding to three G-rich sequences and electrophoretic mobility. Expression of G10BP-1 was undetectable in quiescent 3Y1 cells but was induced steeply after growth stimulation by serum or adenovirus E1A concomitant with the decrease in FN promoter activity. Glutathione S-transferase (GST) pulldown experiments performed with cell extracts containing exogenously or endogenously expressed G10BP-1 indicated that G10BP-1 forms homodimers.
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MATERIALS AND METHODS |
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Cell lines. 3Y1-B cell line clone 1-6 is a clonal line of Fischer rat embryo fibroblasts (24). The XhoC cell line was established by transformation of 3Y1 cells with the adenovirus type 2 E1A and E1B genes (35). g12 cells were established by transfection of 3Y1 cells with PM12SG, in which the adenovirus type 2 E1A 12S cDNA (49) was placed downstream of the mouse mammary tumor virus long terminal repeat (29). The YG1 cell line was established by introducing pCMV-G10BP-1 and pSV2neo (42) into 3Y1 cells and expresses G10BP-1 constitutively. These cell lines were cultivated at 37°C in Dulbecco's modified Eagle's minimal essential medium with 10% fetal calf serum (FCS).
Construction of a pGAD-XhoC cDNA library. Total cellular RNA was prepared from XhoC cells as described by Okayama et al. (37), and poly(A)+ RNA was reverse transcribed by using an oligo(dT) primer with an XhoI site. The RNA strand of the mRNA-cDNA hybrid was replaced with the corresponding DNA strand by using Escherichia coli RNase H, E. coli DNA polymerase I, and E. coli DNA ligase (37), and the cDNA was ligated to EcoRI linkers after both termini were blunt ended. After cleavage with EcoRI and XhoI, the cDNA (100 ng) was ligated to 100 ng of EcoRI/SalI-digested yeast expression plasmid pGAD424 (Clontech) by incubation at 16°C for 48 h. The ligated cDNA was extracted with phenol-chloroform, ultrafiltered by using micron 10 (Millipore), and electrotransformed into E. coli DH10B with an E. coli Pulser (Bio-Rad) to generate the pGAD-XhoC cDNA library (Fig. 1B). This library directs the expression of fused proteins between the DNA-binding domain of Gal4 and cDNA-encoded polypeptides from the crippled ADH1 promoter and replicates autonomously as plasmids in yeasts. The library contained 3.1 × 105 primary recombinants with an average cDNA size of about 0.9 kb.
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One-hybrid screening.
Reporter plasmids pHISi-G10 and
pLacZ-G10 (Fig. 1B) were constructed by inserting three
head-to-tail-ligated copies of 24-bp oligonucleotide
ACCAAAGGGGGGGGGGAAGTTCTC with an
EcoRI recognition sequence at the 5' end into the
EcoRI-SmaI site of pHISi and pLacZ located
upstream of the HIS3 and CYC1 promoters. The
oligonucleotide contains the rat FN promoter sequence from positions
245 to
222, including the G10 stretch which is underlined.
Saccharomyces cerevisiae YM4271 (his
ura
leu
) was transformed with these
two plasmids and plated on synthetic dropout (SD) medium lacking
histidine, and clones that grew slowly due to residual expression of
the HIS3 gene but were unable to grow in the presence of 60 mM 3-aminotriazole (3-AT) were selected. These clones were further
tested for residual expression of
-galactosidase (
-Gal) as stated
below, and a clone designated YMHL-G10, which integrated two reporter
plasmids, was finally established.
-Gal activity. Each
colony was streaked onto a square area printed on the nylon filter and
incubated by placing the filter on SD agar medium without histidine but
containing 30 mM 3-AT at 30°C for 2 days. The filter was then dipped
in liquid nitrogen, and the colonies were frozen and thawed three
times. The filter was overlaid onto Whatman 3 MM filters that had been
soaked in Z buffer (60 mM Na2HPO4 · 7H2O, 60 mM NaH2PO4 · 7H2O, 10 mM KCl, 1 mM MgSO4 · 7H2O, 50 mM
-mercaptoethanol, pH 7.0) containing 0.01%
5-bromo-4-chloro-3-indolyl-
-D-galactopyranoside (X-Gal) at 30°C for 1 to 2 h. Positive clones that were blue were
selected.
Screening of a
ZapII cDNA library.
A cDNA library was
constructed from XhoC cells by using
ZapII as a cloning vector. The
mRNA (5 µg) was reverse transcribed by using
ZapII cloning kit
(Stratagene), and the cDNA with an EcoRI site at the 5' end
and an XhoI site at the 3' end was inserted into 100 ng of
ZapII arms. The recombinant DNA was packaged by using GigapackII
Packaging Extract (Stratagene) to yield a
ZapII-XhoC cDNA library.
The cDNA library was plated on Luria-Bertani agar plates at about
5 × 104 recombinants per 137-mm-diameter dish and
incubated at 42°C for 3 to 4 h until visible plaques developed.
Nitrocellulose filters soaked with 20 mM
isopropyl-
-D-thiogalactopyranoside (IPTG) were overlaid
on the plates, and expression of fusion proteins consisting of
-Gal
and the polypeptide encoded by the cDNA was induced by incubation at
37°C overnight. The filters were washed in binding buffer (20 mM
HEPES, 40 mM KCl, 10 mM MgCl2, 1 mM dithiothreitol [DTT],
0.1 mM ZnSO4) (31), and the proteins were
denatured by incubating the filter in 50 ml of binding buffer
containing 6 M guanidinium hydrochloride at 4°C for 15 min. The
proteins were renatured in binding buffer containing a 1:2 serial
dilution of guanidinium hydrochloride from 6 to 0.1875 M at 4°C for 5 min. The filters were then blocked in binding buffer supplemented with sterilized 5% skim milk at 4°C for 30 min and incubated in binding buffer containing 10-µg/ml poly(dI-dC) · poly(dI-dC) and a
106-cpm/ml 32P-labeled 27-bp oligonucleotide
containing the G10 stretch. The filters were washed in binding buffer
and autoradiographed with an intensifying screen at
80°C.
Construction of G10BP-1 expression vectors.
For construction
of pCMV-G10BP-1, Bluescript SK (
) G10BP-1 was excised from the
ZapII recombinant after coinfection of XL-1 Blue cells with the
recombinant and the helper phage in accordance with the manufacturer's
(Stratagene) instructions. The DNA was cleaved with ApaI and
BamHI, and the 1.5-kb fragment containing the G10BP-1 cDNA
was inserted into the ApaI-BamHI site of pCMV to
generate pCMV-G10BP-1.
b-Zip was constructed by joining
two PCR products of the N- and C-terminal portions of the G10BP-1 cDNA.
The N-terminal portion was synthesized with the upstream sense primer
from positions 1 to 18 fused to the BamHI recognition
sequence and the downstream antisense primer from positions 497 to 517 fused to the SmaI recognition sequence and inserted into the
BamHI-SmaI site of pGEX-2TK to generate
pGEX-G10BP-1N. The C-terminal portion was synthesized with the upstream
sense primer from positions 738 to 756 fused to the SmaI
recognition sequence and the downstream antisense primer from positions
1144 to 1163 fused to the EcoRI recognition sequence and
inserted into the SmaI-EcoRI site of
pGEX-G10BP-1N to generate pGEX-G10BP-1
b-Zip.
Transient transfection and analysis of gene expression. DNA transfection was performed by using the CaPO4 coprecipitation procedure as modified by Chen and Okayama (4). For analysis of FN promoter activity during cell cycle progression, subconfluent monolayers of 3Y1 and YG1 cells were transfected with 10 µg each of FN promoter-luciferase constructs carrying base substitutions in the G-rich sequences. The total amount of the transfected DNA was adjusted to 20 µg per dish with pRSV0 DNA. The cells were maintained in low-serum (0.5% FCS) medium for 48 h, and growth was stimulated by replacing the medium with fresh medium containing 10% FCS. Cells harvested at various intervals were assayed for luciferase activity with 120 µg of protein from the cell extract and 100 µl of the luciferin substrate (Nippongene) with an LB9501 luminometer (Berthold).
Preparation of cell extracts.
Whole-cell extracts were
prepared essentially by the method of Manley et al. (30).
The cells were washed in phosphate-buffered saline (PBS) containing 0.5 mM MgCl2 and suspended in 4 volumes of hypotonic buffer (10 mM Tris-hydrochloride [pH 7.9] at 4°C, 1 mM EDTA, 5 mM DTT, 0.5 mM
phenylmethylsulfonyl fluoride [PMSF]). After 20 min, the cells were
homogenized and 4 volumes of sucrose-glycerol solution (50 mM
Tris-hydrochloride [pH 7.9] at 4°C, 10 mM MgCl2, 25%
[wt/vol] sucrose, 50% [vol/vol] glycerol, 2 mM DTT, 0.5 mM PMSF)
was added. After gentle stirring, 1 volume of saturated (NH4)2SO4 was added dropwise and
the homogenate was centrifuged at 53,000 rpm and 4°C for 3 h in
a Hitachi RP65T rotor. To the supernatant was added solid
(NH4)2SO4 to a final concentration of 0.33 g/ml, and the suspension was centrifuged at 53,000 rpm in a
Hitachi RP65T rotor for 30 min. The precipitate was dissolved in a
minimal volume of HM buffer (20 mM HEPES [pH 7.9], 100 mM KCl, 12.5 mM MgCl2, 0.1 mM EDTA, 17% [vol/vol] glycerol, 2 mM DTT,
0.5 mM PMSF). The sample was dialyzed against two changes of 1 liter of
HM buffer for at least 10 h and centrifuged at 37,000 rpm for
1 h in a Hitachi RP100AT rotor. The supernatant was quickly frozen
in dry ice-ethanol and stored at
80°C. Protein concentrations were
determined by a dye-binding assay (Bio-Rad Laboratories).
Western blotting. For preparation of anti-G10BP-1 antibody, GST-G10BP-1 produced in E. coli was purified through a glutathione-Sepharose column (41) and used to immunize rabbits. The rabbit antiserum obtained was first passed through a glutathione-Sepharose column preloaded with GST, and the flowthrough fraction was collected. The fraction was then loaded onto a column made by coupling GST-G10BP-1 to CNBr-Sepharose 4B (Pharmacia LKB Biotechnology), and the antiserum was eluted with 50% ethylene glycol containing 1 M KCl.
Eight to 10 µg of cell extract protein was electrophoresed on 15 and 8% polyacrylamide gels with Laemmli running buffer (25 mM Tris · glycine [pH 8.3], 0.1% sodium dodecyl sulfate [SDS]). Proteins were electrophoretically transferred to nitrocellulose membrane filters (BA85; Schleicher & Schuell) and incubated in immunoblotting diluent solution (5% skim milk, 5% FCS, 1% Tween 20 in PBS) at room temperature for 1 h to minimize nonspecific antibody binding. The filter was incubated with the primary antibody at an appropriate dilution, as indicated in the figure legends, at room temperature for 1 h and washed three times in PBS containing 1% Tween 20 for 15 min each time. The filter was then incubated with a secondary antibody at an appropriate dilution at room temperature for 1 h and washed three times in PBS containing 1% Tween 20 for 15 min. Immune complexes were detected by enhanced chemiluminescence (ECL) by treating the membrane with the ECL detection system in accordance with the manufacturer's (Amersham) protocol and exposed to X-ray film.Preparation of 32P-labeled GST fusion proteins.
Expression of GST fusion proteins in E. coli and
purification on glutathione-Sepharose were performed as described by
Kaelin et al. (22). The fusion protein was phosphorylated in
a 60-µl reaction mixture containing HMK buffer (20 mM
Tris-hydrochloride [pH 7.5], 100 mM NaCl, 12 mM MgCl2),
10 µg of the GST fusion protein, 185 kBq of
[
-32P]ATP, 1 mM DTT, and 50 U of the catalytic subunit
of cyclic AMP (cAMP)-dependent protein kinase (Sigma) at room
temperature for 30 min. The reaction was terminated by addition of 40 µl of stop buffer (10 mM sodium phosphate [pH 8.0], 10 mM sodium
pyrophosphate, 10 mM EDTA, 1-mg/ml bovine serum albumin), and the
mixture was applied to a Sephadex G50 column. 32P-labeled
GST fusion protein was eluted by centrifugation of the column at 4°C
for 5 min.
In vitro protein binding assay.
GST fusion proteins were
electrophoresed on SDS-15% polyacrylamide gels at 150 V for 3 h
and transferred to nitrocellulose filters. The proteins were denatured
by incubating the filters in 50 ml of HBB buffer (20 mM HEPES-KOH [pH
7.5], 50 mM KCl, 5 mM MgCl2, 1 mM DTT, 0.1% Nonidet P-40)
containing 6 M guanidinium hydrochloride at 4°C for 5 min and
renatured successively in HBB buffer containing 1:2 serial dilutions of
guanidinium hydrochloride of 6 to 0.1875 M at 4°C for 5 min. The
filters were blocked with 5% sterilized skim milk (Difco) at 4°C for
30 min and reacted with 32P-labeled GST fusion proteins in
HBB buffer supplemented with 1% skim milk at 2.5 × 105 cpm/ml at 4°C for 4 h. The filters were washed
in PBS-Tween 20 buffer at 4°C for 10 min and autoradiographed with an
intensifying screen at
80°C.
b-Zip (50 µg of each)
were preincubated with 10 µl of glutathione-Sepharose 4B beads
(Pharmacia) at 4°C for 1 h, and the beads were then incubated
with the cell extracts (700 µg of protein each) at 4°C for 1 h
(25) and collected by centrifugation. The beads were washed
five times with TNE buffer, and the bound proteins were eluted from the
beads by boiling in 30 µl of 2× Laemmli buffer for 5 min. The sample
(10 µl) was subjected to SDS-polyacrylamide gel electrophoresis
(PAGE). The presence of G10BP-1 in the eluate was analyzed by Western
blotting.
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RESULTS |
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Molecular cloning of a cDNA encoding the G10 stretch binding
protein with a yeast one-hybrid system.
The expression of the rat
FN gene is regulated by competitive binding of transcription factor Sp1
and its negative regulator G10BP to three G-rich sequences present in
the promoter (43). These sequences are the G10 stretch
between positions
239 and
230 and two GC boxes consisting of the
G10 stretch with one internal C residue insertion between positions
105 and
95 and between
54 and
44 (Fig. 1A). GCd is the most
critical site, and G10BP represses the promoter activity primarily by
exclusion of Sp1 binding to this site.
Ura
Leu
) (Fig. 1B). Both pHISi-G10 and pLacZi-G10 contain
three multimerized 26-bp sequences from the FN promoter containing the
G10 stretch upstream of the minimal promoters of the HIS3
and lacZ genes. A pGAD-XhoC cDNA library was constructed
from XhoC cells, a rat 3Y1 derivative transformed by the adenovirus E1A
and E1B genes, by using a yeast expression vector tagged with the
transcriptional activation domain from the Gal4 transcription factor.
The vector thus directs the synthesis of fusion proteins composed of
cDNA-encoded polypeptides and the Gal4 transcriptional activation
domain. Strain YMHL-G10 was transformed with an aliquot of the
pGAD-XhoC cDNA library which yields about 2 × 106
Leu+ colonies and plated on medium lacking leucine and
histidine and containing 20 mM 3-AT. The His+ colonies (116 clones) developed were streaked on nylon filters placed on medium
containing tryptophan and leucine, and the colonies grown were quickly
frozen in liquid nitrogen and dipped in Z buffer containing X-Gal.
Three positive clones that were blue and thus expressed
-Gal were
isolated. The library plasmids were recovered from each of these
clones, amplified in E. coli, and used for retransformation
of the tester strain. The isolation of His+
-Gal+ colonies was repeated twice more, and two clones
were finally selected. The clone containing a 6.6-kb cDNA insert has
homology with the human elastin gene, and the other clone, containing a 1.7-kb insert, has the sequence with the basic-zipper motif described below. Elastin is a main component of elastic fibers in the
extracellular matrix and was not applicable to the present study.
Isolation of the cDNA clone encoding G10BP was also performed by
screening approximately 5 × 105 recombinant phages
from a
ZapII XhoC cell cDNA library with the 32P-labeled
oligonucleotide containing the G10 stretch as a probe. The plaques
transferred to nitrocellulose filters were dipped in an IPTG solution,
and the clones that expressed fusion proteins consisting of a
cDNA-encoded polypeptide and
-Gal were detected. One positive clone
contained the 1.6-kb cDNA insert whose sequence is identical to that of
the 1.7-kb cDNA clone isolated from the pGAD-XhoC cDNA library. The
protein encoded by this cDNA was named G10BP-1.
Structural features of G10BP-1.
The G10BP-1 cDNA insert of a
ZapII clone was sequenced as shown in Fig.
2. The predicted amino acid sequence
derived from the open reading frame comprises 385 amino acids. The
basic regions shown by the dark boxes are located in the middle and on
the C-terminal side of the coding region. In the middle basic region, 9 of the 24 amino acid residues are arginine and lysine. The stretch of four basic amino acids adjacent to proline (underlined in the box)
might be the nuclear localization signal. A putative zipper structure
consisting of a heptad repeat of four hydrophobic amino acids is
located downstream of the middle basic region. In the C-terminal side
basic region, 11 of the 26 residues are basic amino acids. The
C-terminal portion of G10BP-1 indicated by the open box is unusually
acidic in nature, and 17 of the 49 amino acid residues are glutamic
acid or aspartic acid. A search of the GenBank protein database with
the predicted sequence revealed that the N-terminal half of G10BP-1
from codons 1 to 235 is identical to the amino acid sequence of
resiniferatoxin-binding protein (RBP) (36). The RBP cDNA was
isolated from a rat ganglion cDNA library during isolation of the cDNA
clone for a channel-like RBP. However, RBP lacks channel-like
characteristics, as the authors discussed, and is present ubiquitously
in nonneural cells. Comparison of the RBP sequence with that of G10BP-1
revealed that the A residue in codon 230 adjacent to the first Leu
codon in the zipper structure is missing in the RBP sequence. If the A
residue is inserted, the open reading frame of RBP extends to codon
499. Although the N-terminal half of G10BP-1 is identical to that of
RBP, the length and sequence of the C-terminal half of G10BP-1 are both
considerably different from those of RBP.
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Affinity of binding of G10BP-1 to three G-rich sequences.
To
analyze the specificity of binding of G10BP-1 to three G-rich sequences
in the FN promoter, the
ZapII clone encoding the G10BP-1-
-Gal
fusion protein was plated and its synthesis was induced by covering the
plate with a filter dipped in an IPTG solution. After denaturation and
renaturation of the protein, the filter was cut into four pieces and
each piece was probed with 32P-labeled oligonucleotides
containing either the G10 stretch (G10), the upstream GC box (GCu),
GCd, or G10 with four base substitutions (G10m), as shown
in Fig. 3A. G10BP-1 bound strongly to G10
and GCd and very weakly to GCu and did not bind to G10m.
The pattern of the affinity of binding to three G-rich sequences is the
same as that of the G10BP protein previously purified from E1A- and
E1B-transformed 3Y1 (XhoC) cells, as shown in Fig. 1A.
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Suppression of FN promoter activity by G10BP-1 during G1-to-S progression depends on the genotypes of the G-rich sequences. To analyze the negative role of G10BP-1 in FN promoter activity during cell cycle progression and the requirement of three G-rich sequences in the promoter for this negative regulation, subconfluent cultures of 3Y1 and YG1 cells were transfected with FN promoter-luciferase cDNA constructs carrying base substitutions in the G-rich sequences and maintained in low-serum medium for 48 h to synchronize the cells in the quiescent state. The YG1 cell line was established by introduction of pCMV-G10BP-1 into 3Y1 cells and expresses G10BP-1 constitutively. The cells were then growth stimulated by replacing the medium with fresh medium containing 10% FCS. Progression of the cell cycle was analyzed by the incorporation of [3H]thymidine into the acid-insoluble fraction in untransfected cells similarly synchronized in the quiescent state. Incorporation began to increase steeply in both 3Y1 and YG1 cells at about 12 h after stimulation, localizing the G1-to-S boundary at around this time (Fig. 4A). The level of endogenous FN mRNA, which was extremely high in quiescent 3Y1 cells (0 h), decreased steeply, reaching a minimal level of about one-fifth of the original level. The level of FN mRNA in YG1 cells was low, but the level decreased gradually, reaching the minimal level.
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414 and base substitutions in the three G-rich sequences (Fig. 4). The wild type (wt) sequence is shown by a capital G, and the base-substituted sequence is shown by a small g. The first letter represents the G10 stretch, and the second and third letters represent GCu and GCd. When 3Y1 cells were transfected with pFGGGluc (Fig. 4B),
the promoter activity decreased during cell cycle progression and
reached a minimal level at 20 to 24 h. Cotransfection with pRSV-Sp1 had little effect on the decrease, although the activity was
elevated significantly. In YG1 cells, the promoter activity was very
low, even in the quiescent state (time zero), irrespective of
cotransfection with pRSV-Sp1, indicating that exogenously expressed G10BP-1 suppressed the promoter activity almost completely. When 3Y1
and YG1 cells were transfected with pFgggluc (Fig. 4C), which carries
base substitutions in all of the G-rich sequences, the promoter
activities were low in both cells throughout progression of the cell
cycle. No significant difference was observed between 3Y1 and YG1
cells, indicating that G10BP-1 is unable to interact with any of the
base-substituted G-rich sequences. The reduction in the basal promoter
activity at 0 h is likely to be caused by base substitutions,
although the substitutions were introduced outside the Sp1 motif
GGGCGG. The affinity of Sp1 binding to its motif is
influenced greatly by the surrounding sequence, as we found in the
human FN promoter (44) and as found in the
2-integrin promoter (48). The promoter activity of pFgGgluc carrying
the base substitutions in the G10 stretch and GCd but containing wt GCu
(Fig. 4D) was similar to that of pFgggluc in both 3Y1 and YG1 cells. In
contrast, expression of the promoter of pFggGluc (Fig. 4E), which
carries base substitutions in the G10 stretch and GCu but contains wt
GCd, was at a high level in the quiescent state and decreased during
G1-to-S progression, just like that observed with pFGGGluc
(Fig. 4B). The activity expressed in YG1 cells was very low throughout
cell cycle progression. These results indicate that FN promoter
activity and its suppression by G10BP-1 are regulated primarily through
GCd and GCu plays only a minor role.
To correlate the changes in FN promoter activity during
G1-to-S progression with the levels of G10BP-1 and Sp1
expression, the same cultures of 3Y1 and YG1 cells were similarly made
quiescent and growth stimulated by replacing the medium. Aliquots of
the cell extracts prepared at 4-h intervals were electrophoresed, and
the amounts of G10BP-1 and Sp1 were analyzed by Western blotting (Fig.
5). G10BP-1 could not be detected in 0- and 4-h extracts prepared from 3Y1 cell in the quiescent state and
early G1 but began to be detected in mid-G (Fig. 5A). The
level reached a maximum in late G1 (12 h), and the high
level was maintained until mid-S. The level decreased steeply
thereafter. In YG1 cells (Fig. 5B), the exogenously introduced G10BP-1
cDNA was expressed constitutively, and a significant level of G10BP-1
was detected in quiescent and early G1 cells. The
expression of endogenous G10BP-1 began to increase after
mid-G1, as observed in 3Y1 cells. The level of G10BP-1
endogenously expressed was higher than that expressed exogenously. In
contrast, Sp1 was expressed constitutively in both 3Y1 and YG1 cells
(Fig. 5C and D), and the levels did not change significantly throughout
cell cycle progression. These results show a good correlation between
the induction of G10BP-1 expression and the decrease in FN promoter
activity (Fig. 4), suggesting that FN promoter activity is determined
by the concentration of G10BP-1 relative to that of Sp1.
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Induction of G10BP-1 by adenovirus E1A.
To test the induction
of G10BP-1 by adenovirus E1A, a 3Y1 derivative cell line, g12, which
expresses the exogenously introduced E1A 12S cDNA in response to
dexamethasone (dex) (18) was made quiescent by maintenance
in low-serum (0.5% FCS) medium, and cell cycle progression was induced
by addition of 10
6 M dex. The levels of E1A and G10BP-1
were monitored by Western blotting (Fig.
6). Under these conditions, the rate of
[3H]thymidine uptake into the acid-insoluble fraction
began to increase after about 8 h. E1A expression was fully
induced within 7 h, and the level was maintained throughout cell
cycle progression (Fig. 6A). G10BP-1 was not expressed in the quiescent
state (0 h) but was maximally induced within 7 h, concomitant with
E1A expression (Fig. 6B). The level decreased gradually during cell cycle progression. This indicates that the G10BP-1 gene is a target of
E1A. Similar treatment of quiescent 3Y1 cells with dex did not result
in the induction of G10BP-1.
|
Homodimerization of G10BP-1.
The presence of the zipper motif
in G10BP-1 suggested that it forms homo- and/or heterodimers. To test
homodimer formation and the involvement of the basic-zipper motif in
dimerization, the G10BP-1 and G10BP-1
b-Zip cDNAs were cloned into
the pGEX-2TK vector (22), in which the nucleotide sequence
corresponding to the amino acid sequence RRASV for recognition by the
catalytic subunit of cAMP-dependent protein kinase A (1, 38)
was placed between the GST sequence and the cDNA cloning site. The
G10BP-1
b-Zip cDNA lacks the middle basic region and the zipper motif
from codons 172 to 244. GST-G10BP-1 and GST-G10BP-1
b-Zip produced
in E. coli were purified and subjected to SDS-PAGE. The
proteins were denatured and renatured after transfer to a
nitrocellulose filter and probed with 32P-labeled
GST-G10BP-1 prepared by phosphorylation with cAMP-dependent protein
kinase A. As shown in Fig. 7A, the probe
bound to GST-G10BP-1 but not to GST-G10BP-1
b-Zip or to GST alone,
indicating that G10BP-1 forms the homodimer through its basic-zipper
region.
|
b-Zip were preloaded onto
glutathione-Sepharose beads and incubated with the YG1 0-h extract,
which contains only exogenous G10BP-1, and the 3Y1 16-h extract, which
contains endogenous G10BP-1, as shown in Fig. 5. Specifically retained
proteins were eluted together with the GST fusion protein by boiling
the beads in SDS loading buffer and resolved by SDS-PAGE. The proteins
that bound to G10BP-1 were detected by Western blotting using
anti-G10BP-1 antibody. The eluates obtained from the YG1 0-h and 3Y1
16-h extracts after incubation with preloaded GST-G10BP-1 showed few
bands (lane 3 and 5). The two slow-migrating bands corresponded to
GST-G10BP-1 and its cleavage product, judging from the bands in lane
1, in which purified GST-G10BP-1 was electrophoresed. The
fast-migrating band shown by the arrow corresponded to G10BP-1, because
it showed the same mobility as the G10BP-1 protein present in the YG1
0-h extract (lane 7). No G10BP-1 was detected in the eluates recovered after incubation with preloaded GST-G10BP-1
b-Zip (lanes 4 and 6).
The slow-migrating band corresponded to GST-G10BP-1
b-Zip (lane 2).
These results indicate that both exogenous G10BP-1 in the YG1 0-h
extract and endogenous G10BP-1 in the 3Y1 16-h extract bound to
GST-G10BP-1 in its native state through the basic-zipper region.
| |
DISCUSSION |
|---|
|
|
|---|
In the present study, a cDNA encoding an Sp1 negative regulator, G10BP (43), which suppresses FN promoter activity through binding to three G-rich sequences was cloned by the yeast one-hybrid system. A tester strain, YMHL-G10, containing the HIS3 and lacZ genes fused to the G10 stretch and minimal promoters was transformed by a pGAD-XhoC cDNA library constructed in a yeast expression vector tagged with the transcriptional activation domain from the Gal4 transcription factor. One positive clone encodes a G-rich sequence binding protein, designated G10BP-1, which comprises 385 amino acids. G10BP-1 has regions rich in basic residues and a zipper structure; however, it may not belong to the basic-zipper DNA binding protein family. First, the basic region, usually located adjacent to the helically stacked hydrophobic residues, is located at a considerable distance in G10BP-1. Second, there is a proline in the first heptad and no hydrophobic residues are present at positions 3 and 4 in the first and the third heptads, which are found in true zippers.
The following features of G10BP-1 suggest that it is identical or closely related to the G10BP protein previously purified from XhoC cells, which were derived from rat 3Y1 cells transformed by the adenovirus E1A and E1B genes (43). (i) The affinity of G10BP-1 binding to the three G-rich sequences, the G10 stretch (G10), GCu, GCd, and these sequences containing base substitutions is identical to that of G10BP (Fig. 3A). (ii) The promoter activity of FN promoter-luciferase cDNA constructs is repressed by G10BP-1, and the repression is strictly dependent on GCd, as previously shown with purified G10BP (43) (Fig. 4). (iii) The expression of G10BP-1 is induced by E1A and serum factors (Fig. 5 and 6). (iv) The size of G10BP-1 analyzed by Southwestern blotting was the same as that of G10BP (Fig. 3B).
The expression of G10BP-1 is cell cycle regulated and dependent on cell growth arrest rather than cell density. The level of G10BP-1 was very low or undetectable in quiescent 3Y1 cells but increased steeply after growth stimulation by serum, reaching a maximum in late G1. Transcription factor Sp1, which competes with G10BP-1 for binding to three G-rich sequences, is expressed at a constant level throughout cell cycle progression from G1 to S phase. The elevation of the expression level of G10BP-1 may exclude the binding of Sp1 to these sites after mid-G1 and suppresses FN promoter activity. E1A mutants dl646N and dl922/947 (47), containing deletions of codons 30 to 85 and 122 to 129, respectively, lose the ability to repress FN gene expression (34). Since these regions are essential for binding of E1A to the retinoblastoma protein (pRB) and related proteins p107 and p130 (46, 47), the expression of G10BP-1 might be repressed by pRB family members and E1A may overcome this repression through complex formation with pRB family members. Negative regulation of G10BP-1 expression by pRB family members may also be released through phosphorylation of these members by cyclin-dependent kinases, cyclin D/cdk4,6, and cyclin E/cdk2 (6, 8, 9, 23, 26, 32), since in quiescent 3Y1 cells, cyclin D1 is induced in mid-G1 and cyclin E and cdk2 are induced in late G1 after growth stimulation by serum (18). The time course of the induction of these cyclins and cdks is well correlated with that of G10BP-1 accumulation.
Analysis of the dimerization of G10BP-1 by Western blotting (Fig. 7A)
suggested that G10BP-1 forms homodimers through the basic-zipper
region. Far Western blotting of the YG1 0- and 24-h extracts with
anti-G10BP-1 antibody (Fig. 7B) revealed only one band, which migrated
to the same position as did G10BP-1 prepared from GST-G10BP-1 by
cleavage with thrombin. The same band was also detected in the XhoC
cell extract from which G10BP was purified. Since the YG1 0-h extract
contains only exogenously expressed G10BP-1 and the YG1 24-h extract
contains both exogenous and endogenous G10BP-1, this result also
suggests that G10BP-1 expressed by the expression vector is identical
to endogenous G10BP and forms homodimers but not heterodimers. G10BP-1
was also recovered from the YG1 0-h and 3Y1 16-h extracts by GST
pulldown assays (Fig. 7C), indicating that G10BP-1 is capable of
homodimer formation in its native state. The pattern of complex
formation between the G10 stretch and G10BP-1 varies, depending on the
concentration of cell extracts. When the amount of the extracts was
limited, fast-migrating complex I was formed, but slow-migrating
complexes II and III began to be formed as the amounts of extract added
increased (data not shown), suggesting that G10BP-1 forms homomultimers
depending on its concentration. The formation of three- and
four-stranded
-helical coiled coils has been reported with the GCN4
leucine zipper protein (12).
The isolation of cDNA clones encoding the G10 stretch binding protein
was performed by both a yeast one-hybrid system and Southwestern
blotting of a
ZapII cDNA library. The G10BP-1 cDNA was isolated by
either method, but it was a sole clone encoding a nuclear protein,
suggesting that the number of G10 binding proteins in the cells is
limited. As the affinity of Sp1 binding to its consensus motif is
strongly influenced by adjacent sequences, the affinity of G10BP-1
binding is also influenced by the position of the C residue(s) in the G
stretch, since it binds strongly to GCd but poorly to GCu. GC boxes are
the most ubiquitous promoter elements, but the recognition of the
sequence by positive and negative factors is highly specific, and a
particular GC box seems to be the target of both factors. As shown in
Fig. 4, GCd is the target of both Sp1 and G10BP-1 and primarily
determines FN promoter activity. We recently found that the expression
level of the FN gene in NEC14 human embryonal carcinoma cells is very
low but is steeply enhanced by the induction of Sp1 following induction of differentiation (44). Among four GC boxes in the human FN promoter, Sp1 binds preferentially to one of them, and the factor UnDF,
which is present specifically in undifferentiated cells and competes
with Sp1 for binding, also binds preferentially to the same GC box.
After induction of NEC14 cell differentiation, the expression of the
2(I) procollagen and
2-integrin genes is also stimulated
concomitant with expression of the FN gene. The expression of these
genes and of the human
1(1) precollagen gene (19) is also
regulated by Sp1 (45, 48). It would be interesting to
determine whether the expression of these genes encoding cell adhesion
molecules is also negatively regulated by a common factor or a
respective factor specific to the base sequence of the GC box.
| |
ACKNOWLEDGMENT |
|---|
We thank Y. Fujii for Sp1 expression plasmid pRSV-Sp1.
| |
FOOTNOTES |
|---|
* Corresponding author. Mailing address: Department of Biological Science and Technology, Science University of Tokyo, Noda-shi, Chiba 278, Japan. Phone: 81-471-24-1501, ext. 4401. Fax: 81-471-25-1841. E-mail: koda{at}rs.noda.sut.ac.jp.
| |
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