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Molecular and Cellular Biology, September 1998, p. 5032-5041, Vol. 18, No. 9
0270-7306/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
A Cellular Repressor of E1A-Stimulated Genes
That Inhibits Activation by E2F
Elizabeth
Veal,1
Michael
Eisenstein,1
Zian H.
Tseng,2 and
Grace
Gill1,*
Department of Pathology, Harvard Medical
School, Boston, Massachusetts 02115,1 and
Department of Molecular and Cell Biology, University of
California Berkeley, Berkeley, California 947202
Received 18 March 1998/Returned for modification 3 June
1998/Accepted 12 June 1998
 |
ABSTRACT |
The adenovirus E1A protein both activates and represses gene
expression to promote cellular proliferation and inhibit
differentiation. Here we report the identification and characterization
of a cellular protein that antagonizes transcriptional activation and
cellular transformation by E1A. This protein, termed CREG for
cellular repressor of E1A-stimulated genes, shares limited sequence
similarity with E1A and binds both the general transcription
factor TBP and the tumor suppressor pRb in vitro. In transfection
assays, CREG represses transcription and antagonizes 12SE1A-mediated
activation of both the adenovirus E2 and cellular hsp70 promoters.
CREG also antagonizes E1A-mediated transformation, as expression of
CREG reduces the efficiency with which E1A and the oncogene
ras cooperate to transform primary cells. Binding sites for
E2F, a key transcriptional regulator of cell cycle progression,
were found to be required for repression of the adenovirus E2
promoter by CREG, and CREG was shown to inhibit activation by E2F.
Since both the adenovirus E1A protein and transcriptional activation by
E2F function to promote cellular proliferation, the results presented
here suggest that CREG activity may contribute to the transcriptional
control of cell growth and differentiation.
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INTRODUCTION |
Studies of the transforming proteins
of small DNA tumor viruses, such as adenovirus E1A, simian virus 40 large tumor antigen, or human papillomavirus E7, have revealed a great
deal about the proteins and pathways that regulate cellular
proliferation. In normal cells, the transition from G1 to S
phase and the start of DNA synthesis is tightly controlled by
mechanisms that include transcriptional regulation of genes encoding
proteins required in the S phase. In many cell types, the adenovirus
E1A protein dramatically alters the transcriptional program of the host
cell to stimulate cell division and inhibit differentiation. The
ability of E1A to reprogram cellular gene expression to promote entry into S phase correlates with the ability of E1A to cooperate with oncogenes, such as ras, to transform primary cells (38,
62).
The protein products of both the 12S and 13S mRNA forms of E1A (12SE1A
and 13SE1A, respectively) regulate the expression of a number of viral
and cellular genes. Although 13SEIA has a unique transcriptional
activation domain encoded by CR3, the sequences present in 12SE1A are
sufficient to mediate cellular transformation. Investigations into the
mechanisms by which E1A activates and represses expression of
particular genes have revealed that 12SE1A interacts with several
transcriptional regulators of cell proliferation, including the
retinoblastoma tumor suppressor protein, pRb, and the coactivators p300
and CBP. Two conserved regions of E1A, CR1 and CR2, have been shown to
mediate binding to pRb, and CR1 also participates in binding to p300
(14, 71). The functional importance of these interactions is
supported by the observation that mutations in CR1 and CR2 result in
E1A proteins defective in transcriptional regulation and cellular
transformation (62, 71). These same regions of E1A have also
been implicated in interactions with other cellular transcription
factors, such as TATA-binding protein (TBP), raising the possibility
that transcriptional regulation and cellular transformation by E1A may
involve additional mechanisms (22, 61).
12SE1A has been observed to activate transcription through several
different response elements, including both sequences in the core
promoter and binding sites for specific regulatory proteins. The
binding site for the cell cycle-regulated transcription factor E2F is
an E1A response element that was first identified in the adenoviral E2
(AdE2) promoter (49). A variety of other E1A response elements have been identified in the E1A-stimulated hsp70, PCNA, and
the adeno-associated virus P5 promoters (32, 36, 50, 54).
Multiple sequence elements in the hsp70 promoter have been implicated
in the response to E1A, including the TATA box and the CAAT box
(43, 55, 72). Transcriptional stimulation of the AdE2 and
hsp70 promoters by 12SE1A has therefore been thought to involve
distinct mechanisms and, in fact, these promoters have been shown to
respond differently to some E1A mutants (35). It is clear,
however, that E1A employs multiple mechanisms to regulate gene
expression, and it remains possible that some common mechanisms may be
involved in the activation of these disparate promoters.
Although initially identified as an E1A response element, binding sites
for E2F have been shown to be important for the regulated transcription
of many genes whose products contribute to cell cycle progression or
DNA synthesis. In mammalian cells, E2F activity is composed of at least
five E2F family proteins and two DP subunits that form E2F-DP
heterodimers, whose activity is highly regulated during the cell
cycle (reviewed in reference 56).
Overexpression of E2F in cell culture leads to increased cell
proliferation, often accompanied by apoptosis, which is dependent on
the transcriptional activation function (for a review, see reference
1 and references therein). These observations have
been confirmed in animal studies demonstrating that regulated E2F
activity is critical for normal cell cycle progression, cell survival,
and possibly differentiation in vivo (5, 8, 12, 13, 17, 73).
The transcriptional activity of the E2F proteins is regulated by
association with the retinoblastoma protein, pRb, and the related p107
and p130 proteins. pRb not only inhibits activation by E2F, but the
E2F-pRb complex also functions to repress transcription from other
activators bound at the promoter (70). E2F activity is
also regulated at other levels, including expression, nuclear
localization, DNA binding, and protein stability (3, 21, 27, 39,
47, 56, 68). The molecular mechanisms that ensure proper
regulation of the different E2F family proteins during cell
proliferation and differentiation are complex and not fully understood.
We have identified a human cellular repressor of E1A-stimulated genes,
designated hCREG, that shares limited sequence similarity with E1A and
binds both the general transcription factor TBP and the tumor
suppressor pRb in vitro. When tethered to a promoter by fusion to
a heterologous DNA binding domain, hCREG represses transcription. In
transient-transfection assays, hCREG was found to repress transcription
and antagonize the ability of adenovirus E1A to stimulate the AdE2
and hsp70 promoters. Expression of hCREG also reduces the ability of
E1A to cooperate with the oncogene ras in the
transformation of primary cells. Analysis of mutant derivatives
of the AdE2 promoter revealed that binding sites for the cell
cycle regulator E2F constitute one target of hCREG-mediated repression. Analysis of CREG activity on several different
E2F-regulated promoters and Gal4E2F fusion proteins indicates
that hCREG functions by inhibiting the transcriptional activation
function of E2F. The results presented here suggest that hCREG may
contribute to the transcriptional control of cell growth by repression
of specific activators such as E2F.
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MATERIALS AND METHODS |
Plasmids.
Fragments of 0.7 kb containing the hCREG open
reading frame were inserted into the HindIII and
XbaI sites of Rc/CMV (Invitrogen) to give CMVhCREG, the
EcoRI and XbaI sites of pGEX4T-1 (Pharmacia Biotech) to give pGEX+hCREG, into the EcoRI and
XbaI sites of pSG424 (53) to give pSG424+hCREG,
and into pT
STOP for in vitro transcription and translation. All
other Gal4(1-147) fusion proteins have been previously described:
pSG147 and pSGVP (53); Gal4+E2F1 expresses a
Gal4(1-147)+E2F1(aa284-437) fusion protein; Gal4+E2F1(
417-437) expresses a Gal4(1-147)+E2F1(aa284-417) fusion protein, and
Gal4+E2F1(Y411C) expresses a Gal4(1-147)+E2F1(aa284-437)
fusion protein with a single amino acid change from tyrosine to cystine
at position 411 (24); pJ3-Gal4-E2F4 and pJ3-Gal4-E2F5
express Gal4+E2F4(aa276-412) and Gal4+E2F5(aa222-346) fusion
proteins (25).
The reporters used in transfection assays have all been previously
described: Gal4TkCAT (54); pBLCAT2 (42); G5luc,
which contains the luciferase gene under the control of the minimal E1B
TATA with five Gal4 binding sites upstream (23); pE2w.t.CAT and the mutants (
80
70)E2CAT and (
64
60)(
45
36)E2CAT
(41); pMaeWTDHFR contains the wild-type dihydrofolate
reductase (DHFR) promoter, and pMaeNWDHFR contains a mutant DHFR
promoter in which the E2F sites have been disrupted (45);
pGL2-(
536) contains the wild-type b-myb promoter, and
pGL2-(
536)mut contains a mutant b-myb promoter in which
the E2F site has been disrupted (37); pGL2AN contains the
E2F1 promoter and the pGL2AN 5'-3' mutant contains an E2F1 promoter
mutant in which the E2F sites have been disrupted (48); and
pHC1170 contains the hsp70 promoter (55).
GST-Rb, GST-Rb(379-792), pRb, and pRb
22 expression constructs were
provided by Bill Kaelin (Dana Farber Cancer Institute). CMV12SE1A and
GST-12SE1A plasmids were provided by Yang Shi (Harvard Medical School).
Expression plasmids used in the baby rat kidney (BRK) assay were
13S-SVE expressing the adenovirus type 5 13S cDNA from the simian virus
40 early promoter and pucEJRas containing an oncogenic allele of
Ha-ras under the control of the EJ promoter (26).
Analysis of protein interactions in vitro.
Glutathione
S-transferase (GST) and GST fusion proteins were purified
from DH5 cells with glutathione-Sepharose 4B (Pharmacia) beads.
35S-methionine-labeled proteins were generated by in vitro
transcription and translation with the Promega TNT reticulocyte lysate
kit and then diluted with NETN (0.5% Nonidet P-40, 20 mM Tris-HCl [pH 8.0], 100 mM NaCl, 1 mM EDTA, 1 mM dithiothreitol [DTT]). A 20-µl portion of diluted in vitro-translated protein was reserved as input,
and 200 µl was combined with 20 µl of GST slurry (1:1). Binding
reactions were carried out with gentle rotation at 4°C for 1 h,
after which the beads were pelleted. The beads were washed four or five
times with NETN, and bound protein was separated by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and visualized by
autoradiography. Whole-cell lysate (1 mg) prepared in ELB (250 mM NaCl,
50 mM HEPES, 0.1% Nonidet P-40, 1 mM DTT, 1 mM EDTA, 0.4 mM
phenylmethylsulfonyl fluoride [PMSF]) from a p107-overexpressing
stable cell line, U2OS-p107 (74), was used in binding
reactions as described above. Bound proteins were analyzed by Western
blotting with mouse anti-p107 (a gift from N. Dyson).
Transfections and reporter assays.
CV-1 monkey kidney cells
were seeded onto 10- or 6-cm plates 24 to 30 h before
transfection. Medium was replaced 1 to 3 h prior to transfection.
DNA (10 µg/10-cm plate or 5 µg/6-cm plate) was precipitated by the
calcium phosphate method and spread over the cells. At 16 to 20 h
after transfection, the medium was removed, and the plates were washed
once with phosphate-buffered saline (PBS); then fresh medium was added
to each plate. For transcription assays, cells were harvested 36 to
44 h after transfection, by which time the plates were up to 95%
confluent. For luciferase assays, cells were washed twice with PBS and
then harvested into 200 µl of lysis buffer (25 mM
Tris-PO4, 15% [vol/vol] glycerol, 2% [wt/vol] CHAPS
(3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate), 1%
[wt/vol] lecithin, 1% [wt/vol] bovine serum albumin, 4 mM EGTA, 8 mM MgCl2, 1 mM DTT, 0.4 mM PMSF). A luminometer was used to inject 1 mM D-luciferin into 300 µl of luciferase assay
buffer (25 mM glycylglycine, 15 mM MgSO4, 15 mM potassium
phosphate [pH 7.8], 4 mM EGTA, 1 mM DTT, 1 mM ATP), to which 20 µl
of cell lysate had just been added. The luminescence over 20 s was
then recorded as the luciferase activity. Chloramphenicol
acetyltransferase (CAT) assays were carried out as previously described
(58).
Preparation of BRK cells and BRK transformation assay.
BRK
cells were prepared by dissociation of 5- to 6-day-old Sprague-Dawley
rat kidneys with trypsin and plated out at 4 × 105 to
6 × 105 cells per 6-cm plate in Dulbecco modified
Eagle medium that included 5 mM penicillin-streptomycin and 10%
(vol/vol) fetal calf serum.
At 2 to 3 days after preparation, cells were transfected with a total
of 10 µg of DNA per plate containing 3 µg of SV13SE1A, 2 µg of
EJ-Ras and either 5 µg of CMVhCREG or 5 µg of carrier DNA. At 16 to
20 h after transfection, the medium was discarded and each plate
was rinsed four times with 2 ml of PBS before the addition of fresh
medium. At 48 h after transfection the medium was removed and
replaced with fresh medium containing 5% (vol/vol) fetal calf serum,
and at 14 days after transfection the foci were counted on each plate.
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RESULTS |
Cloning of hCREG.
In an attempt to identify novel
transcriptional regulators, a Drosophila cDNA library was
screened by the yeast two-hybrid method for proteins that interact with
the Drosophila TBP. A novel protein, dCREG, has been
identified in this screen; the identification and
characterization of dCREG will be described elsewhere. Sequence analysis of dCREG revealed it to share amino acid sequence similarity with the regions of the adenovirus E1A protein, CR1 and CR2, that have been shown to be important for the transcriptional and
transforming functions of this viral oncoprotein (Fig.
1B). Sequences in CR1 mediate
binding to both pRb and p300 family proteins, and the pRb binding
domain in CR2 contains an LXCXE motif found in many pRb-binding
proteins (64, 71). A partial cDNA capable of encoding a
human homolog was identified in the GenBank human EST sequence database. The cloning and characterization of this protein, human CREG (hCREG), are described here.

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FIG. 1.
Amino acid sequence of human CREG. (A) The amino acid
sequence of human CREG aligned with the sequences of the mouse and
Drosophila CREG proteins. The human and
Drosophila proteins are 31% identical; the human and mouse
CREG sequences are 77% identical. (B) Alignment of human and
Drosophila CREG sequences with conserved regions of the
adenovirus E1A protein. CR1 E1A(41-77) and CR2 E1A(121-136) are
shown. Positions at which mutations in E1A disrupt binding to pRb and
p300 are indicated. Identical amino acids are shaded and boxed, and
similar amino acids are boxed.
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A 2.0-kb hCREG cDNA was cloned from a HeLa cDNA library. This cDNA
contained a 660-base open reading frame followed by approximately 1.2 kb of 3' untranslated region (UTR). Northern blot analysis revealed
that hCREG mRNA is widely expressed in adult human tissues (data
not shown). As shown in Fig. 1A, the CREG protein sequence is well conserved between species; the predicted human CREG
protein is 31% identical and 55% similar to the Drosophila
CREG. We have also identified a murine CREG homolog that is 77%
identical to the human protein (Fig. 1A). Although CREG is well
conserved across species, the human and mouse CREG homologs are less
similar to E1A. Human CREG shows some similarities with E1A CR1,
particularly in the region implicated in pRb binding; however, this
protein lacks the LXCXE motif that is critical for CR2 function
(11). Despite this limited sequence similarity, we have
found that hCREG regulates expression from several E1A-responsive genes
(see below).
hCREG binds TBP, pRb, p107, and p130 in vitro.
Since
Drosophila CREG was cloned as a TBP-binding protein, the
ability of the human homolog to interact with TBP was investigated. As
shown in Fig. 2A, in vitro-translated TBP
bound to a GST-hCREG fusion protein but not to GST alone. The hCREG
interaction with TBP was not reduced by the presence of ethidium
bromide in the reaction, indicating that this interaction is not
mediated by DNA (data not shown).

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FIG. 2.
hCREG interacts with the transcriptional regulators TBP,
pRb, and p107. (A) hCREG binds TBP in vitro. In vitro-translated,
35S-methionine-labeled, full-length human TBP bound to
GST-hCREG but not to GST alone. (B and C) Like E1A, hCREG binds pRb in
vitro, and the pocket domain of pRb is necessary for this interaction.
(B) Binding reactions were carried out between GST-hCREG or GST-12SE1A
and in vitro-translated, 35S-methionine-labeled,
full-length human pRb or the mutant pRb 22. (C) GST-pRb(379-792)
bound in vitro-translated hCREG and E1A. Binding reactions were carried
out between GST-Rb(379-792) and in vitro-translated,
35S-methionine-labeled, hCREG or 12SE1A. (D) GST-hCREG
binds p107 in an extract from p107-overexpressing U2OS cells.
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Guided by the sequence similarity with E1A, we had previously shown
that dCREG interacts with RBF, the Drosophila homolog of the
retinoblastoma protein, both in vitro and in vivo (to be described
elsewhere). Therefore, in vitro binding assays were carried out to
determine whether hCREG was able to interact with the human
retinoblastoma protein pRb. As shown in Fig. 2B, pRb bound GST-hCREG in
vitro. The central domain of pRb, often called the "pocket", is
required for binding viral oncoproteins, such as E1A, and is also
necessary for Rb-mediated growth arrest (64). The pocket of
Rb is necessary and sufficient for hCREG binding, since hCREG binds
Rb(379-792), which contains only the pocket, and does not bind
22,
a tumor-derived Rb mutant from which the pocket is absent (Fig. 2B and
C) (28). The pattern and extent of binding observed with
hCREG are similar to those observed with E1A in these experiments. The
GST-hCREG fusion was also used in affinity chromatography experiments
with mammalian cell lysates. Western blotting analysis revealed that
hCREG also bound the pRb-related p107 and p130 proteins from cell
lysates (Fig. 2D and data not shown). Consistent with the observation
that hCREG binds pRb and related proteins in vitro, we have shown that
hCREG is able to regulate transcription from some pRb-responsive
promoters (see below).
hCREG represses transcription when tethered to the promoter.
Analysis of the amino acid sequence of hCREG did not reveal the
presence of any sequences characteristic of known DNA-binding domains. In order to determine whether hCREG affects
transcriptional activity when tethered to the promoter, the entire
hCREG open reading frame was fused in frame to the cDNA encoding the
DNA binding domain of GAL4, Gal4(1-147). CV-1 cells were
cotransfected with a plasmid expressing the Gal4-hCREG
fusion and a reporter plasmid, Gal4TkCAT, that contains
five Gal4 binding sites 105 bases upstream of the herpes simplex virus
thymidine kinase (tk) promoter. As shown in Fig.
3, the Gal4-hCREG fusion lowered
expression from this promoter by fivefold relative to Gal4(1-147).
Similar results were obtained when this experiment was carried out in HeLa or U2OS cells (data not shown). The observed fivefold repression is comparable to the level seen when other repressors, e.g., pRb, are
tethered to this promoter (2, 7). Gal4-hCREG had no effect
on expression from the TkCAT reporter, which lacks Gal4 binding sites
(Fig. 3B). It is therefore unlikely that Gal4-hCREG reduces CAT
activity via a nonspecific, global effect on transcription, translation, or cell viability. Instead, these data support the conclusion that, when tethered to the promoter, hCREG functions as a
transcriptional repressor.

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FIG. 3.
hCREG represses transcription when tethered to a
promoter by a heterologous DNA binding domain. (A) A Gal4-hCREG fusion
represses transcription from a promoter bearing Gal4 binding sites.
CV-1 cells on 10-cm plates were transfected with 5 µg of Gal4TkCAT, a
reporter plasmid bearing Gal4 binding sites upstream of the HSVtk
promoter; 1 µg of pSG147 expressing Gal4(1-147); or 1 µg of
pSG424+hCREG expressing Gal4-hCREG. Each group of CV-1 cells was also
transfected with 4 µg of carrier DNA. The CAT activity observed with
Gal4-hCREG is shown relative to the CAT activity with Gal4(1-147),
which was taken as 100%. (B) Repression by Gal4-hCREG is dependent on
the presence of Gal4 binding sites in the reporter. CV-1 cells were
transiently transfected as described above but with pBL2CAT, a reporter
plasmid expressing CAT under the control of the tk promoter. The
experiment was performed in triplicate more than three times; results
from a representative experiment are shown. Error bars represent the
standard deviation of the mean.
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CREG functions antagonistically to E1A to repress transcription
from the AdE2 promoter.
Having established that hCREG can repress
transcription when tethered to the promoter, we considered the
possibility that hCREG may repress particular target promoters. In
vitro binding studies demonstrated that hCREG can bind the E1A-binding
proteins TBP and pRb. We therefore investigated whether CREG was able
to regulate the expression of any E1A-responsive promoters. E1A
stimulates transcription of the other early adenoviral genes including
AdE2. 12SE1A activates the AdE2 promoter through a direct interaction with pRb (and the related p107 and p130 proteins), thereby relieving pRb-mediated repression of E2F (reviewed in reference
49).
To investigate whether hCREG can regulate the AdE2 promoter, CV-1 cells
were cotransfected with a CAT reporter plasmid containing the AdE2
promoter and an expression plasmid containing hCREG under the control
of the CMV promoter. A four- to sixfold repression of the AdE2 promoter
was observed in cells transfected with CMVhCREG compared with cells
transfected with a control CMV plasmid. Repression of the AdE2 promoter
showed a dose-dependent response to the amount of CMVhCREG DNA added
(Fig. 4A). Repression by hCREG depends on specific sequences in the AdE2 promoter (see below).

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FIG. 4.
hCREG and E1A have opposing activities on the AdE2
promoter. (A) hCREG represses expression from the AdE2 promoter. CV-1
cells on 10-cm plates were transfected with 10 µg of DNA, of which 5 µg was the pE2w.t.CAT reporter plasmid. Cells were also
transfected with increasing amounts of CMVhCREG DNA, as
indicated, which was made up to a total of 5 µg of
expression plasmid with CMV gal. (B) hCREG abrogates E1A-mediated
activation of AdE2. CV-1 cells on 10-cm plates were transfected with 10 µg of DNA, of which 5 µg was the pE2w.t.CAT reporter plasmid. Cells
were also transfected with 50 ng of the E1A expression vector
CMV12SE1A, 4.95 µg of CMVhCREG, or the control plasmid (CMV gal),
as indicated in the figure. The experiment was carried out in
triplicate and repeated at least three times. Data are from a
representative experiment, and the error bars indicate the standard
deviation.
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Since hCREG was found to repress the E1A-stimulated AdE2 promoter, the
effects of cotransfecting hCREG and E1A on AdE2 CAT expression were
determined. As shown in Fig. 4B, hCREG and E1A have mutually opposing
effects on expression from the AdE2 promoter; as expected, 12SE1A
stimulated expression, but this increase was not observed in the
presence of CMVhCREG. Similarly, E1A relieves CREG-mediated repression.
The ability of hCREG to inhibit the activation of the AdE2 promoter by
E1A was not due to reduced expression of E1A, as cotransfection of CREG
did not significantly reduce the level of E1A protein detected on a
Western blot of transfected cells (data not shown). The abrogation of
E1A activation of AdE2 by hCREG is consistent with the hypothesis that
CREG and E1A have opposing effects on the expression of a common set of target genes.
hCREG abrogates E1A-mediated activation of the hsp70 promoter.
Having established that hCREG abrogates E1A-mediated activation of the
AdE2 promoter, we investigated whether hCREG also repressed the
expression of an E1A-stimulated promoter lacking E2F sites. For this
purpose, we chose the hsp70 promoter, a cellular gene whose expression
is stimulated by E1A. Although many sequence elements in the hsp70
promoter have been implicated in the response to E1A, including the
CAAT box and the TATA box, they are distinct from the E1A response
elements in AdE2 (43, 55, 72). In order to examine the
effect of hCREG on expression from the hsp70 promoter, CV-1 cells were
cotransfected with a reporter expressing CAT under the control of the
hsp70 promoter and CMVhCREG or a control CMV plasmid. In these
experiments, hCREG was observed to repress the activity of the hsp70
promoter four- to sixfold (Fig. 5A).
Thus, the hsp70 promoter is also a target for hCREG-mediated repression. In an experiment similar to that described above, the
ability of E1A to stimulate expression from the hsp70 promoter was
severely impaired, in a dose-dependent manner, by cotransfection with
hCREG (Fig. 5B). This experiment also revealed the ability of E1A to
relieve CREG-mediated repression of the hsp70 promoter. Thus, hCREG and
E1A have opposing effects on transcription from two dissimilar
promoters.

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FIG. 5.
hCREG represses the E1A-stimulated hsp70 promoter. (A)
hCREG represses the hsp70 promoter. CV-1 cells on 10-cm plates were
transfected with a total of 10 µg of DNA, of which 5 µg was
pHC1170, a CAT reporter plasmid containing the hsp70 promoter
(55). Cells were also transfected with increasing amounts of
CMVhCREG DNA as indicated. (B) hCREG antagonizes activation by E1A.
Cells were transfected as described above with the addition of 100 ng
of CMV12SE1A where indicated (+). The total amount of expression
plasmid was brought to 5 µg per plate with CMV gal. These
experiments were performed in triplicate and repeated at least three
times. Representative experiments are shown, and the error bars
indicate the standard deviation.
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hCREG interferes with the ability of E1A and ras to
transform BRK cells.
E1A, together with a cooperating oncogene
such as activated ras, will transform primary BRK cells,
giving rise to foci of proliferating cells that are no longer contact
inhibited (52). Since hCREG was found to antagonize
E1A-mediated activation of both the AdE2 and hsp70 promoters, we tested
whether hCREG would also antagonize the transforming activity of E1A.
BRK cells were prepared and transfected with vectors expressing
13SE1A and an oncogenic allele of Ha-Ras (hereafter referred
to as Ras) or 13SE1A, Ras, and hCREG. Foci of rapidly dividing
cells were counted 14 days after transfection. Although the average
number of foci per plate varied between experiments, cotransfection
with CMVhCREG reproducibly reduced the number of foci per
plate (Table 1). Overall, expression of
hCREG was observed to lower the transformation efficiency by
approximately threefold. A threefold reduction in the number of
foci is similar to the level of inhibition observed upon cotransfection
of CREB binding protein (CBP) with E1A and E1B (59).
In a separate experiment, cotransfection of hCREG was not found to
detectably alter the levels of E1A and Ras expression as determined by
Western blot analysis (data not shown). No foci were ever observed on
plates transfected with E1A, Ras, or hCREG alone or on plates
cotransfected with hCREG and Ras, indicating that hCREG displays no
oncogenic activity in this assay. hCREG's ability to interfere with
the combined oncogenic activity of E1A and Ras suggests that CREG
inhibits cell proliferation, presumably through its ability to repress
the expression of cellular genes required for immortalization.
CREG repression of the AdE2 promoter is E2F site dependent.
To
address the mechanisms by which hCREG acts to antagonize some of the
transcriptional and transforming activities of E1A, we wished to
determine if hCREG mediates repression through specific promoter
elements and, if so, if these correspond to E1A response elements. The
AdE2 promoter is somewhat simpler than the large hsp70 promoter
fragment used in these studies, and the E1A response elements of the
AdE2 promoter have been well defined. This promoter contains two E2F
binding sites and an ATF site through which E1A is able to stimulate
expression (Fig. 6A) (41).
Activation through the ATF site requires E1A CR3, which is unique to
the 13SE1A product (40). Sequences in CR1 and CR2 of E1A,
present in both the 12S and 13S gene products, participate in
activation through the E2F sites. By using AdE2 promoters with
mutations in the known E1A response elements, the ATF or E2F sites, the
contribution of these sequence elements to repression by hCREG was
determined. The ATF and E2F sites both contribute to the expression of
AdE2; however, these sites respond differently to transfection with
CREG. The mutant promoter with a disruption of the ATF site
[pE2(
80/
70)CAT] was still repressed by cotransfection with
CMVhCREG (Fig. 6B). In contrast, hCREG was unable to repress the
activity of the AdE2 mutant reporter in which both E2F sites have been
disrupted, i.e., the pE2(
64/
60,
45/
36)CAT reporter (Fig. 6C).
Curiously, the activity of this mutant reporter, lacking E2F sites, was
slightly elevated in cells cotransfected with CMVhCREG. Thus, hCREG
repression of the AdE2 promoter is mediated through specific upstream
promoter elements, the E2F sites, that also support activation by E1A.

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|
FIG. 6.
hCREG repression of the AdE2 promoter is E2F site
dependent. (A) The wild-type AdE2 promoter contains three
E1A-responsive sites: an ATF site and two E2F sites. Two previously
characterized mutant promoters E2( 80 70), in which the ATF site (B)
had been disrupted, and E2( 64 60)( 45 36), in which the E2F sites
(C) had been disrupted were also used (41). CV-1 cells on
10-cm plates were cotransfected with either 5 µg of wild-type or
mutant AdE2 CAT reporter and either 5 µg of CMVhCREG(+) or 5 µg of
control plasmid CMV gal( ) DNA. (A) hCREG represses the wild-type
AdE2 promoter. (B) hCREG represses the ( 80 70)AdE2 promoter. (C)
hCREG does not repress the ( 64 60)( 45 36)AdE2 promoter. Relative
CAT activities are shown with the activity of each reporter with the
control effector plasmid (CMV gal) taken to be 1. Experiments were
performed at least three times. The data shown in all three panels are
from a single representative experiment, and the error bars indicate
the standard deviation.
|
|
E2F site-dependent repression by CREG is context dependent.
Since hCREG-mediated repression of AdE2 is E2F site dependent, the
effect of hCREG on the expression from cellular E2F-regulated promoters
was examined. E2F sites have been shown to be important for the cell
cycle-regulated expression of many cellular genes whose products are
involved in cell cycle progression or DNA synthesis, including the
DHFR, b-myb, and E2F1 genes (6, 29, 31, 37, 48,
57). Transcriptional regulation by E2F appears to involve both
repression by complexes between E2F and members of the pRb protein
family during G0-early G1 phase and activation
by E2F at G1-S. The E2F sites in the DHFR promoter, for
example, contribute to activation at the G1-S phase
(6, 57). In the b-myb and E2F1 promoters,
however, the E2F sites have been implicated in transcriptional
repression during G0-early G1 (29, 31, 37, 48). We have examined the ability of CREG to regulate the
expression of promoters subject to both E2F site-dependent activation
and repression.
Upon cotransfection into CV-1 cells, hCREG was found to repress the
activity of the mouse DHFR promoter 4.4-fold (Table
2). In the absence of functional E2F
sites in the DHFR promoter, cotransfection with CMVhCREG resulted in a
twofold reduction of DHFR promoter-driven luciferase activity. Thus,
maximal hCREG-mediated repression of DHFR, like AdE2, requires the E2F
site(s). Additional elements in the DHFR promoter appear to
contribute to the hCREG response, however, since twofold
repression of the DHFR promoter was observed in the absence of
E2F sites in marked contrast to the AdE2 promoter (Fig. 6C). When
CMVhCREG was cotransfected into CV-1 cells with either a luciferase
reporter containing the b-myb or the E2F1 promoters only a
2- to 2.5-fold decrease in luciferase activity was observed (Table 2).
This moderate repression was also observed in the absence of functional
E2F sites, suggesting that in the b-myb and E2F1 promoters
the E2F sites are not sufficient to confer a response to hCREG. The
sequence elements in these promoters that confer the twofold response
to hCREG have not been determined. Thus, although maximal
hCREG-mediated repression of the AdE2 and DHFR promoters is E2F
site dependent, these experiments suggest that the ability of an E2F
site to support hCREG-mediated repression is context dependent.
CREG is able to repress activation by Gal4E2F1, Gal4E2F4, or
Gal4E2F5.
The E2F site-dependent repression of transcription by
hCREG observed for the AdE2 and DHFR promoters suggests that hCREG is able to specifically repress transcriptional activation by E2F. E2F
activity in mammalian cells results from heterodimers of at least five
different E2F family members with two DP proteins. The E2F proteins
share a similar overall structure, with domains for sequence-specific
DNA binding and dimerization located towards the amino-terminal half
and sequences required for transcriptional activation and binding to
the pRb family of repressors at the C terminus (56).
Although the different E2F family proteins have overlapping activities
in many in vitro and overexpression assays, specific E2F family members
are subject to differential regulation of expression, subcellular
localization, and complex formation (10, 39, 47, 56, 68).
In order to shed light upon the mechanism of E2F site-dependent
repression by hCREG, experiments were performed to investigate whether
hCREG repressed stimulation by hybrid activators consisting of the
C-terminal activation domain of E2F1, E2F4, or E2F5 fused to the
Gal4(1-147) DNA-binding domain. Gal4E2F1, Gal4E2F4, or Gal4E2F5 each
strongly activated transcription of the G5luc reporter (at least
100-fold; data not shown). Cotransfection of CMVhCREG strongly
repressed activation by both the Gal4E2F4 and Gal4E2F5 fusions as shown
in Fig. 7A; these activators were
repressed eight- to ninefold by hCREG. Cotransfection of CMVhCREG with
Gal4E2F1 resulted in four- to fivefold repression. This is comparable
to the magnitude of repression observed when Gal4E2F1 was cotransfected with Rb in Rb-deficient cells (24). In contrast, activation by Gal4VP16 was only reduced twofold, indicating that hCREG acts preferentially to inhibit the activity of E2F. Expression of the Gal4+E2F fusions was not reduced by cotransfection with CMV-hCREG, as
revealed by immunoblot analysis (data not shown). Since the Gal4E2F
fusion proteins lack the E2F DNA binding and dimerization domains,
these data indicate that hCREG does not repress E2F site-dependent transcription by interfering with the ability of E2F to bind its cognate binding site.

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|
FIG. 7.
hCREG represses the activation function of E2F. (A)
hCREG represses activation by E2F1, E2F4, and E2F5. CV-1 cells on 6-cm
plates were cotransfected with 2.5 µg of G5 luciferase, a reporter
plasmid containing a minimal promoter (E1B TATA) and five binding sites
for the yeast transactivator Gal4; 10 ng of expression vector for the
indicated Gal4(1-147) fusion protein; and 2.5 µg of CMVhCREG or
control plasmid (CMV gal). Each Gal4-activation domain fusion protein
activated transcription by more than 100-fold. The figure shows the
average fold repression from at least three independent experiments
performed in triplicate, and the error bars indicate the standard error
of the mean. (B) hCREG represses activation by Gal4E2F1 mutants that
are unable to bind to Rb. Experiments were carried out as in panel A
with the indicated Gal4E2F1 fusions. WT contains the wild-type E2F1
activation domain; 417-437 contains a deletion and Y411C contains a
point mutation in the activation domain, both of which eliminate Rb
binding in vitro (24). The experiment was performed in
triplicate and repeated twice. The figure shows the fold repression
from a single representative experiment.
|
|
The retinoblastoma protein, which interacts with hCREG in in vitro
binding assays (Fig. 2), represses E2F-dependent transcription through
binding to specific sequences in the activation domain. We have been
unable to detect an interaction in in vitro binding assays between E2F1
and hCREG (15). Mutants of E2F1 that fail to bind pRb but
retain the activation function have been described (24). As
shown in Fig. 7B, cotransfection with hCREG represses these Gal4+E2F1
mutants as efficiently as did the wild type. These data show that pRb
binding by E2F is not required for repression by CREG and thus rule out
the simple model whereby pRb serves as a bridge for recruiting the
hCREG repressor to E2F. Consistent with the context dependence of E2F
site-dependent repression, these data suggest that, rather than
augmenting the repression activity associated with E2F-pRb complexes,
CREG acts to inhibit the activation function of E2F.
 |
DISCUSSION |
We report here the identification of a novel cellular protein,
hCREG, that antagonizes the transcriptional activation and cellular
transformation activities of the adenovirus E1A oncoprotein. These
studies suggest that, in addition to the other known activities of E1A,
its ability to functionally antagonize hCREG-mediated repression may
contribute to the transcriptional and transforming properties of this
viral oncoprotein. Cotransfection of hCREG was found to inhibit the
ability of E1A and Ras to cooperate in the oncogenic transformation of
primary cells. Other cellular proteins such as p300, CBP, and p53, that
have been shown to inhibit transformation in this assay have clear and
dramatic effects on cell growth and/or differentiation (18,
59). Transcriptional activation by E2F, an important regulator of
cell cycle progression, is specifically repressed by hCREG. The
complete inability of hCREG to repress transcription from a mutant AdE2
promoter lacking functional E2F sites indicates that repression is
specific for certain target promoters and not due to global inhibitory
effects on transcription, translation, or cell viability. Although
understanding the full biological activity of hCREG will require
additional studies, the data presented here suggest that the normal
role of CREG may be to inhibit proliferation and/or promote
differentiation.
The adenovirus E1A protein utilizes multiple mechanisms to regulate
gene expression. The ability of E1A to repress transcription of many
genes implicated in terminal differentiation has largely been
correlated with binding to p300 and CBP, although interactions with
additional proteins, including TBP and promoter-specific activators,
may also be involved (60-63, 69). Interestingly, CREG
shares sequence similarity with E1A CR1, which is required for
E1A-mediated repression. We have so far failed to observe an
interaction between hCREG and p300 or CBP, and the ability of hCREG to
regulate transcription of promoters repressed by E1A has not been
extensively studied to date (16). The best-understood mechanism of transcriptional activation by 12SE1A is through a direct
interaction with the tumor suppressor pRb and the related proteins p107
and p130; for example, E1A binding to pRb relieves pRb-mediated
repression of the E2F sites in the AdE2 promoter (49). In
vitro, hCREG interacts with the E1A-binding proteins TBP, pRb, p107,
and p130, raising the possibility that CREG may antagonize E1A by
direct binding to the same protein targets. Alternatively, CREG may
antagonize E1A by acting at a different step in an E1A-regulated
pathway.
We have shown that hCREG and E1A have opposing effects on transcription
from both the AdE2 and hsp70 promoters. Several models have been put
forth to explain the mechanism by which E1A activates the hsp70
promoter, including the activation of CAAT box-dependent transcription
and the relief of Dr1-mediated repression (34, 43). Our
results suggest an additional mechanism for E1A-mediated activation
that is common to the hsp70 and AdE2 genes: the relief of
hCREG-mediated repression. Since repression of the AdE2 promoter by
CREG is dependent on specific promoter elements, it is likely that
repression of the hsp70 promoter by hCREG, as well as the modest
twofold repression seen with several other promoters, is also mediated
through specific upstream or core promoter elements. Interestingly,
expression of the hsp70 promoter has been found to be regulated during
the cell cycle (33, 46). It is not known at present if the
different CREG responsive promoters are downstream of a common pathway
or if CREG, like E1A, affects the activity of several pathways
important for regulation of gene expression.
Although the E2F sites in both the AdE2 and DHFR promoters were
required for full repression by hCREG, we did not observe E2F
site-dependent repression of the E2F1 and b-myb promoters. Mutation of the E2F sites in the AdE2 and DHFR promoters causes a
decrease in promoter activity, indicating that E2F contributes to
activation of these promoters (6, 41, 57). In contrast, mutation of the E2F sites in the E2F1 and b-myb promoters
results in an elevated level of expression, indicating that
E2F-containing complexes contribute predominantly to repression
(29, 31, 37, 48). Consistent with this view, in vivo
footprinting of the b-myb promoter has shown that the E2F
sites are only occupied during G0-G1, when the
gene is not expressed (75). Although the underlying
mechanism remains obscure, whether a given E2F binding site contributes
to positive or negative regulation depends on the promoter context
(19, 66). Similarly, in our assays, the ability of an E2F
site to support repression by hCREG is context dependent, and we have
only observed E2F site-dependent repression by hCREG on positively
acting E2F sites. Although it remains possible that the failure of the
E2F sites in the b-myb and E2F-1 promoters to support
repression by hCREG is due to other sequence elements present in, or
absent from, these promoters, these observations suggest that it is the
activation function of E2F that is inhibited by CREG.
We have shown that hCREG preferentially represses activation by Gal4
fusion proteins bearing E2F activation domains. Thus, in contrast to
other factors that repress E2F activity, such as p202 and PPAR
,
hCREG does not act predominantly through inhibition of the DNA
binding activity of E2F (4, 9). Interestingly, hCREG showed
twofold-greater repression of Gal4E2F4 and Gal4E2F5 than Gal4E2F1,
suggesting that hCREG-mediated repression may contribute to
differential regulation of these highly related proteins. Since in in
vitro binding assays we have been unable to detect any interaction between E2F1 and hCREG (15), we consider it unlikely that
the repression of E2F activity by hCREG is via a direct interaction. hCREG interacts in vitro with the pRb, p107, and p130 repressor proteins, raising the possibility that these interactions may contribute to specific repression by hCREG in vivo. The simple model
whereby pRb serves as a bridge to recruit the hCREG repressor to E2F is
not supported by our observation that hCREG efficiently inhibited
activation by E2F1 mutants defective in binding pRb. The results with
Gal4+E2F fusions are consistent with the context-dependent effects of
CREG on E2F sites and further support the hypothesis that CREG
represses E2F site-dependent transcription by inhibiting the activation
by "free" E2F and not by augmenting repression by E2F-pRb
complexes.
The mechanism of transcriptional activation by E2F has not been
determined. Fry et al. (19) have reported that the
N-terminal VP16 activation domain will not substitute for E2F in
stimulation of the DHFR promoter, indicating that there is some unique
aspect to the E2F activation function. Although E2F4 and E2F5
activation domains have not been extensively characterized, the
activation domain of E2F1 has been shown to interact with TBP, TFIIH,
MDM2, p300, and CBP (20, 44, 51, 65), any or all of which
may function as coactivators for E2F-dependent activation and are therefore potential targets for hCREG-mediated repression. The observation that hCREG represses transcription when tethered to the promoter suggests that hCREG has a repression domain that inhibits
some aspect of the transcription process common to many genes. Many
transcriptional repressors, such as Dr1, interfere with the function of
the general transcription factor TBP (30). Future studies
should reveal whether hCREG-mediated repression results from inhibition
of the activity of general transcription factors such as TBP,
coactivators, alterations in chromatin structure, or other mechanisms.
The results reported here demonstrate that the hCREG protein represses
E2F-dependent activation and antagonizes the ability of the adenovirus
E1A oncoprotein to stimulate the expression of several genes and to
cooperate with oncogenic ras in the transformation of
primary cells. Both the adenovirus E1A protein and transcriptional activation by E2F function to promote cellular proliferation. hCREG
activity is therefore likely to play a role in inhibiting cell growth
and/or promoting differentiation. Although Northern analysis
revealed that hCREG mRNA is widely expressed in human tissues, we have
found that hCREG mRNA levels increase during the terminal
differentiation of several cell lines (67). Future studies
will examine how changes in hCREG activity affect cell proliferation
and differentiation or influence the cellular response to infection by
DNA tumor viruses.
 |
ACKNOWLEDGMENTS |
We thank Amelia Tung for technical assistance. Studies of
Drosophila CREG were initiated in the laboratory of Robert
Tjian at the University of California, Berkeley. We are grateful to Jennifer Dowhanick for help in setting up the BRK transformation assays. Reagents used in this study were kindly provided by Rene Bernards, Nicholas Dyson, Bill Kaelin, Karl Munger, Joseph Nevins, Bill
Sellers, and Yang Shi. We also thank Keith Blackwell, Mike Carey, Phil
Hinds, Karl Munger, and Yang Shi for helpful comments on the
manuscript.
This work was supported in part by a grant from The Jessie B. Cox
Charitable Trust and The Medical Foundation to G.G.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Pathology, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115. Phone: (617) 432-0985. Fax: (617) 432-1313. E-mail:
ggill{at}warren.med.harvard.edu.
 |
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