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Molecular and Cellular Biology, January 1999, p. 495-504, Vol. 19, No. 1
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
CHOP-Dependent Stress-Inducible Expression of a
Novel Form of Carbonic Anhydrase VI
John
Sok,
Xiao-Zhong
Wang,
Nikoleta
Batchvarova,
Masahiko
Kuroda,
Heather
Harding, and
David
Ron*
Skirball Institute of Biomolecular Medicine,
Departments of Medicine and Cell Biology, and Kaplan Cancer Center,
New York University Medical Center, New York, New York 10016
Received 27 May 1998/Returned for modification 15 July
1998/Accepted 10 September 1998
 |
ABSTRACT |
CHOP (also called GADD153) is a stress-inducible nuclear protein
that dimerizes with members of the C/EBP family of transcription factors and was initially identified as an inhibitor of C/EBP binding
to classic C/EBP target genes. Subsequent experiments suggested a role
for CHOP-C/EBP heterodimers in positively regulating gene expression;
however, direct evidence that this is the case has so far not been
uncovered. Here we describe the identification of a positively
regulated direct CHOP-C/EBP target gene, that encoding murine carbonic
anhydrase VI (CA-VI). The stress-inducible form of the gene is
expressed from an internal promoter and encodes a novel intracellular
form of what is normally a secreted protein. Stress-induced expression
of CA-VI is both CHOP and C/EBP
dependent in that it does not occur in cells deficient in either gene.
A CHOP-responsive element was mapped to the inducible
CA-VI promoter, and in vitro footprinting revealed binding
of CHOP-C/EBP heterodimers to that site. Rescue of CA-VI
expression in c/ebp
/
cells by exogenous
C/EBP
and a shorter, normally inhibitory isoform of the protein
known as LIP suggests that the role of the C/EBP partner is limited to
targeting the CHOP-containing heterodimer to the response element and
points to a preeminent role for CHOP in CA-VI induction during stress.
 |
INTRODUCTION |
Stress is associated with adaptive
alterations in cellular gene expression programs. These in turn are
coordinated by transcription factors that serve as transducers of
stress signals to the nucleus. The GADD153 or
CHOP gene encodes the transcription factor CHOP, which is
highly responsive to certain forms of stress. Multiple toxins and
states of metabolic deprivation serve to activate CHOP gene
expression (3, 5, 7, 14, 16, 19, 26) and modulate the
activity of the CHOP protein (29, 32). These correlative
observations suggest that CHOP may play a role in regulating target
genes in response to stress.
Early biochemical studies of the CHOP protein indicated that it forms
stable dimers with transcription factors of the C/EBP family and that
such dimers are incapable of binding to classical C/EBP sites.
Therefore, under certain circumstances CHOP functions as an inhibitor
of C/EBP proteins (9, 11, 22). This simple picture of CHOP
as a stress-inducible inhibitor of C/EBP proteins was complicated by
the finding that CHOP-C/EBP heterodimers are capable of binding unique
DNA sequences that are distinct from classical C/EBP sites
(29). Furthermore, it was recently demonstrated that CHOP
forms stable dimers with a non-C/EBP transcription factor, ATF3. The
latter is encoded by a gene that is itself stress inducible, raising
the possibility of stress signaling by CHOP-ATF3 heterodimers (6,
15). In an effort to determine if CHOP plays a role in activating
gene expression in response to stress, we recently sought to identify
genes differentially expressed as a result of stress in cells that do
and do not contain CHOP. This analysis led to the
identification of three distinct genes that are absolutely dependent on
CHOP for their induction by stress (31).
The cloning of such CHOP-dependent, stress-inducible genes has allowed
us to examine the role of CHOP and its dimerization partners in the
activation of gene expression. Here we present data indicating that the
most stress-inducible of the CHOP-dependent genes identified in the
aforementioned screen encodes a novel intracellular form of the
normally secreted carbonic anhydrase VI protein (CA-VI). We perform a
functional analysis of the role of CHOP and its dimerization partners
in the stress-inducible activation of this novel CA-VI gene,
and we speculate on the possible physiological role that an
intracellular form of carbonic anhydrase may play in cellular
adaptation to stress.
 |
MATERIALS AND METHODS |
Cell culture, transfection, and treatment.
chop
/
mice and
c/ebp
/
mice have been previously
described (24, 34). Mouse embryonic fibroblasts with
wild-type or mutant genotypes were generated from day 14.5 mouse
embryos (20). chop
/
or
c/ebp
/
3T3 fibroblasts were produced from
the mouse embryonic fibroblasts by serial passage as described
previously (28) and were studied here between passages 22 and 27. NIH 3T3, COS1, and 293T cell lines were originally obtained
from the American Type Culture Collection. All cells were cultured in
Dulbecco modified Eagle medium in the presence of 10% fetal bovine
serum (Intergen) except during methionine starvation conditions, where
cells were cultured in methionine-deficient Dulbecco modified Eagle
medium with 10% dialyzed fetal bovine serum for 16 h. Unless
stated otherwise in the legends, tunicamycin (Sigma) was used at 2 µg/ml for 10 h. Retroviral vectors bearing genes encoding ATF3,
ATF3
LZ, CHOP, and the different C/EBP isoforms were constructed by
introducing the corresponding cDNAs into the pBABE-puromycin retroviral
vector (17). C/EBP
12K and LIP have been previously
described (8, 30). Retroviral vectors, together with the
expression vectors pCMV-HIV Tat, pSV-VSV-G, and pJK3 (bears the genes
that encode the retroviral Gag and Pol proteins), were cotransfected
into 293T cells by the calcium phosphate method; recombinant retroviral particles were harvested 48 h after transfection, and the viral supernatants were used to infect the mutant 3T3 fibroblasts.
Forty-eight hours after infection, the cells were placed in selection
medium containing puromycin (2 µg/ml) for 10 additional days.
RNA isolation, Northern blot analysis, and RT-PCR.
Total RNA
was prepared from cultured cells or tissues by the phenol-guandinium
isothiocyanate method (ULTRASPEC; Biotex Lab, Inc.). For
poly(A)+ RNA isolation, total RNA was purified by
additional CsCl ultracentrifugation, followed by double-passing the RNA
over an oligo(dT) cellulose column. For Northern blots, total RNA was
fractionated on a formaldehyde agarose gel and transferred onto
HyBond-N nylon membranes (Amersham). All cDNA probes were labeled by
random priming in the presence of [
-32P]dCTP and
hybridized at 65°C in Church solution (7% sodium dodecyl sulfate
[SDS], 1 mM EDTA, 0.5 M sodium phosphate buffer [pH 7.4]). Murine
CA-VI (DOC1), CHOP, C/EBP
, BiP, and
-tubulin were used as probes
as described previously (31). To analyze the expression of
CA-VI by reverse transcription (RT)-PCR, 1 µg of total RNA was primed with oligo(dT) to synthesize first-strand cDNA with reverse
transcriptase. The reaction mixture was diluted in Tris-EDTA, and 5%
of the reaction mixture was used for PCR. PCR conditions were 94°C (1 min), 62°C (45 s), and 72°C (1 min) for 30 cycles. CA-VI
type A mRNA was detected by using primers 3S and 6AS, whereas the type
B mRNA was detected by using primers 1S and 6AS. For primer sequence,
see Fig. 1B. The translated in liposarcoma (TLS) control PCR was
performed by using primers with the following sequences: GAT CAA GGA
TCT CGT CAT GAT TC for the sense primer and CCT CAC CCT TCA ACT TGC CAG
for the antisense primer.
Western blot analysis, immunocytochemistry, and
immunoprecipitation.
Whole-cell extracts were prepared in SDS
buffer, electrophoresed on an SDS-12% polyacrylamide gel (or 10%
polyacrylamide for C/EBP
immunoblots), transferred to nitrocellulose
filters (Micron Separations, Inc.), and then reacted with the antisera
indicated. CHOP and the Myc epitope were detected with the murine
monoclonal antibodies 9C8 and 9E10, respectively, as previously
described (4), while C/EBP
and TLS were detected with
rabbit polyclonal antibodies (21, 33). The immunoreactive
protein species were visualized by the enhanced-chemiluminescence
detection system (DuPont, NEN). For the glutathione
S-transferase (GST) pull-down experiments followed by
Western blotting (see Fig. 4D), plasmids bearing genes expressing CHOP
and a fusion protein containing GST and ATF3 or ATF3
LZ were
cotransfected into COS1 cells. All proteins were tagged with the Myc
epitope. Whole-cell extracts were isolated, and the GST fusion proteins
were purified on agarose beads conjugated with glutathione as described
previously (23). The presence of CHOP and ATF3 in the
GST-pulled-down protein complexes was determined by Western blotting
with a mixture of 1:10-diluted 9C8 and 9E10 antibodies (the anti-CHOP
9C8 antibody is required because 9E10-CHOP is poorly reactive with the
9E10 antibody on Western blots). 3' Myc-tagged versions of type A and B
CA-VI were constructed by a patch PCR with 9E10.CA6 (AGA GAT
CAG CTT CTG CTC GCC CCC AAA GTG CCG GTT CTT C) and 9E10.U (GGG GCT CGA
GTC ACA GAT CCT CCT CAG AGA TCA GCT TCT GCT C) primers at a 1:10 ratio. PCR conditions were 94°C (1 min), 50°C (1 min), and 72°C (2 min) for 33 cycles. Immunocytochemistry and immunoprecipitation with the
9E10 antibody were performed as previously described (32), with the modification that the 9E10 hybridoma supernatant was used at a
dilution of 1:5 in the immunocytochemistry experiments.
Isolation of type A and B CA-VI clones and functional
characterization of the type B promoter.
Rapid amplification of 5'
cDNA ends (5'RACE) to clone type A (secreted form) CA-VI was
performed on poly(A)+ RNA from mouse salivary glands. RT
reaction mixtures were primed with the 4AS oligonucleotide (see Fig.
1B) followed by synthesis of a poly(A) tail and PCR amplification
between 2AS and the T.Ad primer as described previously
(13). To isolate the type B (stress-induced) version of
CA-VI, a
-Zap (Stratagene) library made from
tunicamycin-induced NIH 3T3 cells was screened with a 160-bp
AatII-XbaI fragment of the
representational-difference analysis product DOC1.3 (31). Twenty-nine positive plaques were identified after screening of 3 × 105 recombinants; of these, eight were further
characterized by restriction analysis and the two largest clones were
sequenced. The type B promoter was isolated by screening a murine S129
genomic library in
-Fix II (Stratagene), with the cloned cDNA as a
probe. A 2.8-kb ApaI-NcoI subclone containing
both the type A and type B first exons was obtained (see Fig. 3A).
DNase I footprint analysis was performed with bacterially expressed
C/EBP
and CHOP as previously described (29). The probe
consisted of a 479-bp Sau3A-PmlI fragment of the
type B CA-VI promoter labeled at the 5' end of the sense strand by [
-32P]ATP and T4 kinase. To assay promoter
activation by CHOP, the genomic fragment from
2.8 kb to +94 of the
type B transcription start site was fused upstream of the luciferase
gene in the pGL vector (Promega) and cotransfected into
chop
/
3T3 cells or NIH 3T3 cells with or
without expression plasmids bearing CHOP, CHOP
lacking the leucine zipper domain, or CHOP lacking the
DNA-binding basic region (29). The luciferase assay was
performed on duplicate samples 24 to 36 h after transfection, and
tunicamycin was introduced 20 h after transfection. 5' sections of
this promoter were serially deleted by using the restriction sites
shown in Fig. 3A to generate genomic fragments of 1.2, 0.6, 0.4, 0.35, and 0.2 kb in length. Replacement of the TGCAAT sequence with a BamHI site in the context of the 600-bp
Sau3A reporter was carried out by "sewing" PCR using
CA6.M1.S (TGT ACT GGA TCC CCT CCT GCC TCT ACC TCA) and a CA6.M1.AS (AGG
AGG GGA TCC AGT ACA AGG TCA TCC TCT). Transfection efficiency was
monitored by cotransfecting a
-galactosidase reporter driven by the
cytomegalovirus promoter, whose activity varied by less than 10%
between the samples in a given assay.
Nucleotide sequence accession numbers.
The sequences of the
mRNAs encoding the secreted (type A) and stress-induced (type B) CA-VI
proteins have been deposited in GenBank under accession no. AF079835
and AF079834, respectively. The sequence of the type B CA-VI
promoter from
527 to +100 with respect to the position of the
transcription start site has been given accession no. AF079836.
 |
RESULTS |
Genes dependent on CHOP are predicted to be expressed in stressed
wild-type cells but not in stressed cells derived from chop
knockout mice.
Representational-difference analysis of mRNAs
expressed in tunicamycin-treated (stressed)
chop+/+ and chop
/
mouse embryo fibroblasts identified several cDNA fragments from differentially expressed genes (31), two of which
(DOC1 and DOC3) proved, upon sequencing, to be
fragments of the mouse homologue of the carbonic anhydrase VI gene
(Fig. 1A and B). In
several mammalian species, including human and sheep, CA-VI
is highly expressed in the salivary and lachrymal glands and encodes a
secreted form of carbonic anhydrase that accumulates in saliva and
tears (10). The differentially expressed cDNA fragment was
used as a hybridization probe to isolate several full-length murine
CA-VI cDNAs from a tunicamycin-treated mouse fibroblast
library. Sequencing revealed that the encoded protein, while being
highly similar to the human and bovine CA-VIs from amino acid 60 on,
lacked a signal peptide and is not predicted to encode a secreted
protein (Fig. 1B). To further explore the relationship between the
tunicamycin-induced CA-VI cDNA isolated from fibroblasts and
the predicted murine homologue of the secreted form of the enzyme, the
tunicamycin-induced form was hybridized at high stringency to a
Northern blot of mouse submandibular salivary gland mRNAs derived from
chop+/+ and chop
/
mice. A very strong hybridization signal was obtained in both samples
(Fig. 1C, lanes 4 and 5). This result indicates that the tunicamycin-induced mRNA has significant nucleotide identity with murine salivary gland CA-VI and furthermore that CHOP plays
no role in the expression of the secreted form of the enzyme. In fact,
the hybridization signal in the salivary glands was much stronger than
that obtained in the stressed fibroblasts (Fig. 1C, compare lanes 2 and
3 with lanes 4 and 5), consistent with the reported enormous abundance
of the CA-VI protein in saliva (10).

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FIG. 1.
A gene downstream of CHOP encodes a novel
form of carbonic anhydrase VI. (A) Northern blot of total cellular RNA
prepared from untreated and tunicamycin (2 µg/ml)-treated (10 h)
chop+/+ and chop /
fibroblasts. The blot was hybridized sequentially with a
DpnII fragment of CA-VI obtained by
representational-difference analysis of genes downstream of
CHOP (31), followed by hybridization with
CHOP and BiP (which served to document that a
stress response had been induced) and Tubulin as a control
for integrity of the RNA. (B) (Top) Diagram depicting the structure of
the 5' end of the murine CA-VI gene. A indicates the
promoter that is active in salivary glands and that directs the
expression of a secreted form of the protein with a signal peptide
(SP). B indicates the internal, stress-induced, and CHOP-dependent
promoter that encodes an intracellular form of the protein. Coding
regions are indicated by wide boxes, and noncoding regions are
indicated by thin boxes. Introns are presented as thin lines. The
positions of the two initiating methionines are indicated. (Middle)
Nucleotide sequences of the mRNAs encoding the secreted (type A) and
stress-induced (type B) proteins. Lowercase letters are used to
indicate nucleotides contributed by exons unique to either type of
mRNA, and uppercase letters are used for those residues common to both
forms. The methionine at codons 222 to 224 of the type A sequence
corresponds to codons 285 to 287 of the type B mRNA. The positions of
the PCR primers used in performing the RACE and RT-PCR analyses are
indicated. The DpnII fragment constituting
DOC1/CA-VI corresponds to nucleotides 870 to 1394 of the type B mRNA. (Bottom) Alignment between the amino acid sequences
of the secreted forms of mouse and human CA-VI. Identical
residues are shaded, the asterisk denotes the initiation codon for the
type B protein, and the diamonds denote residues that are essential for
enzymatic activity and conserved between all carbonic anhydrases. (C)
Northern blot of total RNA from NIH 3T3 cells left untreated, treated
with tunicamycin, or exposed to methionine-deficient medium for 16 h (left blots) and RNAs from the salivary glands of mice with the
indicated CHOP genotypes (right blots). The blot was
sequentially hybridized with CA-VI, CHOP, and
Tubulin probes. The exposure of the left blot was
approximately five times longer than that of the right blot. (D) RT-PCR
analysis of the RNAs from panel C with primers specific for the type A
and type B mRNAs.
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|
5'RACE with primers located in the portion of the tunicamycin-induced
CA-VI cDNA that is homologous to the human
CA-VI
cDNA
was used to obtain the 5' end of the salivary gland version of
the
murine mRNA (Fig.
1B). Sequencing of the RACE products revealed
that
the salivary gland form of
CA-VI encodes a protein that has
a long hydrophobic N-terminal stretch consistent with a signal
peptide.
The predicted amino acid sequence immediately downstream
of this
hydrophobic domain corresponded exactly to that obtained
by N-terminal
sequencing of purified mouse salivary carbonic anhydrase
protein
(
10). Comparison of the salivary gland (type A) and
tunicamycin-induced (type B) forms of CA-VI revealed the presence
of
divergent N-terminal sequences in proteins that were otherwise
identical, indicating that both the secreted form and the
stress-induced
form of CA-VI are likely to be products of the same gene
(Fig.
1B). PCR analysis of cDNA from untreated and tunicamycin-treated
fibroblasts revealed that only the type B
CA-VI was
expressed
in response to stress in these cells and that the type A
CA-VI (secreted form) was restricted to the salivary glands.
A small
amount of type B transcript was also present in the salivary
gland
(Fig.
1D). Since the active site of the enzyme (beginning at
histidine
84 of the secreted form [
25]) is encoded by
sequences shared
by the two forms, it is likely that both proteins are
active carbonic
anhydrases.
Based on the predicted peptide sequence, the type A mRNA encodes a
secreted protein whereas the type B mRNA is expected to
be retained in
the cell. To examine this issue experimentally,
both forms of CA-VI
were tagged at their C termini with an epitope
tag and expression
vectors for the corresponding proteins were
transfected into COS1 cells
(Fig.
2A). Metabolic labeling followed
by
immunoprecipitation of the tagged proteins from the cell lysate
or the
culture supernatant revealed that the type B protein was
entirely
intracellular but that the type A protein accumulated
in the medium
(Fig.
2B). Immunofluorescence microscopy with an
antibody directed
against the epitope tag revealed that staining
of cells transfected
with an expression plasmid encoding the type
A protein was restricted
to a focal eccentric structure, presumably
reflecting protein in
transit through the endomembrane system,
but that staining of cells
expressing the type B protein was present
in the nucleus and to a
lesser degree in the cytoplasm (diffuse
staining) (Fig.
2C). These
experiments strongly suggest that the
stress-induced form of
CA-VI encodes an intracellular carbonic
anhydrase.

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FIG. 2.
The stress-inducible form of CA-VI encodes an
intracellular protein. (A) Diagram depicting the proteins encoded by
the type A and type B CA-VI mRNAs, which were tagged with
the myc (9E10) epitope at their C termini. (B) COS1 cells transiently
expressing the tagged proteins were metabolically labeled for 3 h,
followed by immunoprecipitation of the tagged proteins from the cell
extract (lanes 1 and 3) and the medium (lanes 2 and 4) and then
resolving by SDS-polyacrylamide gel electrophoresis and
autoradiography. The smaller type B protein product is present only in
the cell extract (lane 1), whereas the type A protein is observed as a
stable protein present in both the cellular extracts and in the medium
(lanes 3 and 4). (C) COS1 cells transiently expressing the
epitope-tagged forms of CA-VI were fixed, permeabilized, and
immunostained with a monoclonal antibody to the Myc tag, 9E10 (left
images), and the nucleophilic dye H33258 (right images). Type A CA-VI
can be visualized, in transit, as punctuate staining that outlines the
endosomal compartment (i), whereas type B CA-VI can be visualized as an
intracellular, predominantly nuclear pattern of staining (ii).
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To determine the genomic basis for the diversity in
CA-VI
mRNAs, mouse genomic clones containing the region corresponding
to both
the type A and type B cDNA 5' ends of
CA-VI were isolated.
Restriction fragment analysis and Southern blotting combined with
genomic PCR and sequencing revealed that the type A 5' sequence
that
encodes the signal peptide is derived from a separate 5'
first exon but
that the type B mRNA 5' end is derived from a different
exon and arises
from transcription initiated from an alternative
promoter, contained
within a large first intron of the gene (Fig.
1B and
3A).

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FIG. 3.
Identification of a cis-acting element
that mediates CHOP induction of the type B CA-VI promoter.
(A) Schematic representation of the type B CA-VI promoter
region in the S129 mouse genome. The thin line represents the 5'
flanking region, and the thick line represents the transcribed region
corresponding to exon 1 of the type A and type B mRNAs. The position of
the CHOP response element, TGCAAT, is indicated. (B) Type B
CA-VI promoter sequence from 527 to +100 with respect to
the position of the transcription start site. The CHOP-C/EBP binding
site is boxed, and the transcribed region is denoted by capital
letters. (C) DNase I footprint analysis of the CA-VI type B
promoter with the indicated bacterially expressed proteins. The probe
was the 479-bp Sau3A-PmlI fragment labeled on the
sense strand at the 5' end. The footprinted region is indicated by the
asterisk. (D) Functional analysis of the type B CA-VI
promoter with luciferase reporter genes transiently transfected into
wild-type NIH 3T3 cells (dark bars) or chop /
3T3 cells (light bars). Where indicated, cells were cotransfected with
wild-type CHOP (CHOP WT) or mutant CHOP (CHOP
LZ , with leucine zipper deleted; CHOP BR , with basic region
deleted) expression plasmids or treated with tunicamycin (TUNIC; 5 µg/ml, 4 h). The position of the CHOP response element is
indicated by diamonds. An X is used to indicate that the CHOP binding
site was replaced by a BamHI linker (TGCAAT
mutant). The simian virus 40 (SV40) minimal promoter served to
control for any nonspecific effects CHOP might have.
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5'RACE of the tunicamycin-induced mRNA confirmed that the cDNA sequence
presented in Fig.
1B is full length and thus that
its 5' end defines
the transcription start site of the putative
tunicamycin-induced
promoter. Sequencing the genomic clone 5'
of the tunicamycin-induced
first exon revealed, at a position
386 nucleotides upstream of the
transcription start site, the
presence of a perfect match for a
CHOP-C/EBP binding site, as
previously defined by in vitro site
selection (
29) (Fig.
3B).
DNase I footprint analysis of this
region with purified, bacterially
expressed CHOP and C/EBP proteins
showed that this sequence is
a binding site for both C/EBP homodimers
and C/EBP-CHOP heterodimers;
the latter gave rise to a stronger and
more extended footprint
than that of the C/EBP homodimers (Fig.
3C,
compare lanes 4 and
5). CHOP by itself does not alter the footprint
pattern of this
region (lane
3).
To address the functional role of this CHOP-C/EBP binding site,
reporter genes were constructed by fusing the genomic fragment
from

2.8 kb to +94 to a luciferase encoding cDNA. Serial deletions
of the
5' sequence were also performed, and a mutant reporter
was constructed
by replacing the CHOP-C/EBP binding site at

386
with a
BamHI restriction endonuclease site. Wild-type reporter
genes containing a minimum of 400 bp of promoter sequence were
responsive to cotransfected
CHOP. Deletion of an additional
45
bp containing the footprinted region led to significant loss of
CHOP
responsiveness. The mutant reporter gene in which the CHOP-C/EBP
binding site had been deleted by introduction of a
BamHI
linker
at

386 was likewise unresponsive to CHOP. Mutant forms of
CHOP that lack either the leucine zipper dimerization domain
or the
DNA-binding basic region did not activate the reporter (Fig.
3D).
These experiments established a correlation between the presence
of a CHOP-C/EBP binding site in the type B (tunicamycin-inducible)
CA-VI promoter and its activation by the CHOP protein. We
also
measured the response of the type B
CA-VI reporter
constructs
to tunicamycin stimulation. In
chop+/+ cells, tunicamycin treatment led to a
modest but highly reproducible
twofold activation of the wild-type
reporters. The mutant reporter
lacking the CHOP-C/EBP binding site was
not induced by tunicamycin,
and a wild-type reporter was not inducible
in
chop
/
cells. While these results do not
fully recapitulate the strong
stress dependence of the activation of
the endogenous
CA-VI gene
by the CHOP protein
(
31) (Fig.
4C, compare lanes 3 and 4), they
do indicate that this experimental system is capable of
determining
the CHOP inducibility of the
CA-VI promoter.

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FIG. 4.
CA-VI induction by CHOP is C/EBP dependent
but is indifferent to the C/EBP isoforms available. (A) Schematic
representation of the C/EBP proteins used in the experiment. AD,
activation domain; DB, DNA-binding basic region; LZ, leucine zipper
domain. (B) Northern blot analysis of total RNA from
c/ebp / fibroblasts transduced with
retroviral vectors bearing genes encoding the indicated C/EBP proteins.
Cells were treated with tunicamycin or left untreated. The blot was
sequentially hybridized with labeled CA-VI, CHOP,
and Tubulin cDNAs. (C) C/EBP overexpression
does not activate CA-VI in the absence of CHOP.
Shown is a Northern blot of RNA from chop /
fibroblasts infected with the indicated retroviral vectors and either
left untreated or treated with tunicamycin. The blot was hybridized
sequentially to labeled CA-VI, BiP, and
C/EBP cDNAs. C/EBP served as the internal
control while BiP served to document the stress response in
the chop / cells. A Western blot (inset)
documents the expression of human C/EBP in the cells transduced by
that virus. TLS, an abundantly expressed nuclear protein, served as the
internal control. (D) The bZIP protein ATF3, which is unrelated to
C/EBPs but capable of dimerizing with CHOP, is incapable of replacing
C/EBP in the stress-induced activation of CA-VI. (Left
blot) Soluble GST proteins from a lysate of COS1 cells transfected with
the indicated expression plasmids were subjected to purification on
glutathione-agarose beads. The isolated protein complexes were boiled
in SDS and resolved by SDS-polyacrylamide gel electrophoresis, blotted
to a nitrocellulose membrane, and reacted with a mixture of anti-Myc
(9E10) and anti-CHOP (9C8) antibodies. The positions of the migrations
of the proteins are indicated by arrows on the right. (Right gels)
RT-PCR estimation of CA-VI expression in
c/ebp / fibroblasts, uninfected or
infected with C/EBP or ATF3 retroviral vectors and treated or not
treated with tunicamycin. TLS expression served as an internal control
for the integrity of the RNA.
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CA-VI was identified as a CHOP target gene in mouse
embryonic fibroblasts. In fibroblasts C/EBP

is the major
dimerization
partner of CHOP (
2,
31,
33). CHOP induction of
CA-VI maps
to a promoter element that interacts with CHOP
only in the context
of a CHOP-C/EBP heterodimer. Consistent with these
facts we find
that CA-VI is not inducible in
c/ebp
/
cells (Fig.
4B). To analyze the
role of the C/EBP dimerization
partner in
CA-VI induction by
CHOP, we rescued the
c/ebp
/
fibroblasts
with a C/EBP

-expressing retrovirus and with viruses
expressing
various derivatives of C/EBP. Stress-induced expression
of
CA-VI did not require the activation domain of C/EBP

, as
LIP,
an isoform of C/EBP that lacks an activation domain
(
8), was
still capable of rescuing
CA-VI
expression. An even smaller derivative
of a C/EBP protein, consisting
entirely of the DNA-contacting
basic region and leucine zipper
dimerization domain of C/EBP

,
was also capable of rescuing
CA-VI expression as was full-length
C/EBP

(Fig.
4B, lanes
8 and 10). Rescue of
CA-VI expression by
all these forms of
C/EBP was strictly CHOP dependent, as reflected
in the requirement for
stress (Fig.
4B, compare odd- and even-numbered
lanes) and in the fact
that the expression of C/EBP

alone in
chop
/
cells could not induce
CA-VI (Fig.
4C, lanes 5 and 6). These
experiments indicate
that the activation domain of the C/EBPs
does not play an essential
role in
CA-VI activation by stress,
implying that activation
is contributed by the CHOP portion of
the
heterodimer.
The transcription factor ATF3, a member of the CREB-ATF family of bZIP
proteins, has recently been shown to associate with
CHOP
(
6). ATF3 is not normally expressed in fibroblasts and
is
not induced in these cells by stress (data not shown). The
DNA-binding
domain of ATF3 and its target sequences are very different
from those
of the C/EBP family. It was of interest, therefore,
to determine if
ATF3 could also rescue
CA-VI expression in
c/ebp
/
cells. We first confirmed that the
ATF3 and CHOP proteins expressed
in our system form stable heterodimers
that coprecipitate in vivo
(Fig.
4D, left gel) and then measured
CA-VI induction by stress
in ATF3-rescued cells; none was
evident (Fig.
4D, right gel).
We thus conclude that
CA-VI is
a specific target gene of CHOP-C/EBP
heterodimers and that CHOP
dimerization partners that do not belong
to the C/EBP family cannot
substitute for the essential role of
the C/EBPs.
 |
DISCUSSION |
The identification of a novel stress-inducible form of
CA-VI downstream of CHOP and the demonstration of the
presence of a functional CHOP-C/EBP binding site in its
stress-inducible promoter provide the first direct evidence for CHOP's
activity as a DNA-binding transcription factor capable of positively
regulating a direct cellular target gene. These experiments provide
evidence for a dual role for CHOP in the regulation of cellular gene
expression: both as an inhibitor of C/EBP binding to classical C/EBP
target genes (9, 11, 22) and as an activator of genes that
have CHOP-C/EBP binding sites; CA-VI is prototypical of the
latter group. This new evidence for a positive component to CHOP action fits nicely with previous experimental results in which it has been
found that the DNA-contacting basic region of CHOP is essential for
eliciting CHOP-dependent phenotypes (2, 33). Furthermore, the existence of a positively regulated direct CHOP target
gene provides a teleological explanation for the presence of a strong and regulated transcriptional activation domain in the CHOP protein (32).
The functional CHOP-C/EBP binding site in the CA-VI promoter
is very similar to the CHOP-C/EBP consensus site selected in vitro in
that both contain the TGCAAT hexanucleotide motif. Both sites are also capable of binding C/EBP homodimers as well as CHOP-C/EBP heterodimers, and the footprints obtained from the selected
consensus site and the functional site from the CA-VI gene
are similar in that the CHOP-C/EBP heterodimer consistently gives rise
to a stronger protection pattern than that observed with C/EBP
homodimers (Fig. 3C) (29). CHOP's participation in the
DNA-binding complex at the tunicamycin-inducible CA-VI
promoter is also supported by the observation that a basic-region
mutant of CHOP is incapable of activating a reporter gene driven by the promoter (Fig. 3D) and by the inability of the basic-region mutant of
CHOP to rescue CA-VI expression in response to stress in
chop
/
cells (data not shown). In spite of
the compelling genetic evidence, the mechanistic aspects of CHOP
interaction with DNA are far from clear. The TGCAAT motif,
common to the in vitro-selected sites and the CA-VI
promoter, represents little more than a C/EBP half-site, GCAAT preceded
by a T (18, 30). This suggests that it is the C/EBP partner
that provides most of the sequence-specific information for the
interaction of the heterodimer with DNA. Indeed, the rescue experiments with c/ebp
/
cells
suggest that the C/EBP dimerization partner contributes nothing
more than a DNA-binding component in that endogenous C/EBP
can be
replaced not only by C/EBP
but also by nonactivating isoforms such
as LIP or truncated versions of C/EBP
that entirely lack a
transactivation domain (8, 12). The specific role played by
the C/EBP component in DNA binding in CA-VI activation by
stress is demonstrated by the fact that ATF3 (a protein that dimerizes avidly with CHOP but has a different ATF-type DNA-binding domain) is
incapable of rescuing CA-VI expression in
c/ebp
/
cells. In spite of the essential
role of the C/EBP dimerization partner in directing the heterodimer to
the response element, the inability of CHOP to activate through classic
C/EBP target sites (22), together with the complete
dependence of activation of CA-VI on an intact CHOP basic
region, suggests that CHOP too plays some role in mediating protein-DNA
interactions. The structural basis for this activity of CHOP remains to
be defined.
Activation of the tunicamycin-inducible promoter of CA-VI as
well as activation of two other genes downstream of CHOP
(DOC4 and DOC6) requires that, in addition to
CHOP being expressed, a stress signal be provided to the cell. This is
revealed by CHOP rescue experiments in
chop
/
cells in which the induction of
CHOP and stress are effectively unlinked (Fig. 4C)
(31). This stress dependence of CA-VI expression is not recapitulated by the reporter gene we have constructed (the
latter is, however, responsive to CHOP). Furthermore, the full
magnitude of the tunicamycin inducibility of even the largest reporter
construct we have tested (2.8 kb) is increased only ~2-fold compared
to the >20-fold increase in the expression of the endogenous gene.
Stable integration of the 2.8-kb reporter does not remedy this
low-level inducibility (data not shown). Collectively, these results
suggest that portions of the gene lying outside the fragment used in
constructing the reporter contribute to the inducibility of
CA-VI by stress. We have no way to know if these putative
additional regulatory elements are CHOP responsive or if they are used
to allow the convergence of a parallel, chop-independent
stress-inducible pathway on the CA-VI promoter. The fact
that stress induction of CA-VI (DOC1) in
chop
/
cells can be rescued by a mutant CHOP
protein that lacks the stress-inducible phosphorylation sites
(31) suggests that at least part of this second signal in
CA-VI induction is CHOP independent. Either way, CHOP
appears to exert an essential permissive role on the induction of the
stress-inducible CA-VI promoter, and this permissive effect
correlates with the presence of a direct binding site in the type B
promoter-proximal region. A model for the role of CHOP and its
dimerization partner in the induction of CA-VI is diagramed
in Fig. 5.

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|
FIG. 5.
Diagram depicting components of the signaling pathway
hypothesized to play a role in cellular stress-mediated induction of
type B CA-VI. Cellular stress leads to the induction of the
chop gene and accumulation of CHOP protein. The latter forms
a dimer with a member of the C/EBP family, and this activates the type
B CA-VI promoter. Intracellular accumulation of CA-VI is
predicted to increase the proton concentration in the cell by promoting
the hydration of CO2 produced by the metabolic activity of
the cell.
|
|
The CHOP-dependent, novel form of CA-VI induced in response
to stress encodes a protein that is retained intracellularly. This fact
is in marked contrast to the major exocrine-gland-specific product of
the CA-VI gene which is a constitutively secreted form of
carbonic anhydrase (expression of the latter is not CHOP dependent; compare lanes 4 and 5 in Fig. 1C). There is every reason to believe that, as with the secreted form of CA-VI, the stress-induced form is a
protein with carbonic anhydrase and esterase activities; this
assumption is based on the fact that both forms contain most of the
residues conserved among other known carbonic anhydrases and all of the
residues that are known to contribute to the active site of the enzyme
(25). Carbonic anhydrase catalyzes the reversible hydration
of CO2 to H2CO3 (27).
Inside the cell, where a net production of CO2 takes place,
the cell's CO2 hydration may have the effect of acidifying
the intracellular milieu (this is because of the disassociation of
H2CO3 into H+ and
HCO3
). We do not at present have measurements
for the magnitude of this hypothesized CHOP- and CA-VI-dependent
stress-inducible acidification of the cell, and therefore, the
physiological significance of the expression of the stress-induced form
of CA-VI is not known. However, changes in intracellular pH,
even those occurring within the physiological range, may significantly
affect many cellular processes. It is intriguing to speculate,
therefore, that CHOP-dependent expression of CA-VI, by
altering intracellular pH, may contribute in some way to the
CHOP-dependent component of the response of cells to stress. Cells from
chop knockout mice exhibit less programmed cell death in
response to stress than cells from wild-type mice (34).
Recently, it has been demonstrated that the membrane pore-forming activity of the proapoptotic regulator Bax is pH dependent, increasing with decreasing pH (1). We propose, as a hypothesis for
future testing, that during stress, CHOP- and CA-VI-dependent
intracellular acidification may contribute to apoptosis by increasing
the pore-forming activity of proapoptotic mediators such as Bax.
 |
ACKNOWLEDGMENTS |
We are indebted to Valeria Poli for the gift of C/EBP
knockout
mice; to Ross Fernley and Thomas Maren for advice on carbonic anhydrases; to Tsonwin Hai for discussions on ATF3; to Edward Skolnik,
Lennart Philipson, and members of their lab as well as the other
members of the Ron lab for criticism and advice; and to Jue Yee Kim for
assistance with the figure layouts.
This work was supported by NIH grants DK47119 and ES08681. J.S. is a
trainee in the NYU MSTP program and supported by NIGMS grant GM07308.
D.R. is a Stephen Birnbaum Scholar of the Leukemia Society of America.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Skirball
Institute of Biomolecular Medicine, New York University Medical Center,
New York, NY 10016. Phone: (212) 263-7786. Fax: (212) 263-8951. E-mail: ron{at}saturn.med.nyu.edu.
 |
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