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Molecular and Cellular Biology, October 1999, p. 6500-6508, Vol. 19, No. 10
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Mouse Receptor Interacting Protein 3 Does Not
Contain a Caspase-Recruiting or a Death Domain but Induces
Apoptosis and Activates NF-
B
Nanette J.
Pazdernik,1,2
David B.
Donner,2,3
Mark G.
Goebl,1,3 and
Maureen A.
Harrington1,3,*
Departments of Biochemistry and Molecular
Biology1 and Microbiology and
Immunology,2 Indiana University School of
Medicine, and Walther Cancer Institute,3
Indianapolis, Indiana 46202
Received 26 May 1999/Accepted 29 June 1999
 |
ABSTRACT |
The death domain-containing receptor superfamily and their
respective downstream mediators control whether or not cells initiate apoptosis or activate NF-
B, events critical for proper immune system
function. A screen for upstream activators of NF-
B identified a
novel serine-threonine kinase capable of activating NF-
B and inducing apoptosis. Based upon domain organization and sequence similarity, this novel kinase, named mRIP3 (mouse receptor interacting protein 3), appears to be a new RIP family member. RIP, RIP2, and mRIP3
contain an N-terminal kinase domain that share 30 to 40% homology. In
contrast to the C-terminal death domain found in RIP or the C-terminal
caspase-recruiting domain found in RIP2, the C-terminal tail of mRIP3
contains neither motif and is unique. Despite this feature,
overexpression of the mRIP3 C terminus is sufficient to induce
apoptosis, suggesting that mRIP3 uses a novel mechanism to induce
death. mRIP3 also induced NF-
B activity which was inhibited by
overexpression of either dominant-negative NIK or dominant-negative
TRAF2. In vitro kinase assays demonstrate that mRIP3 is catalytically
active and has autophosphorylation site(s) in the C-terminal domain,
but the mRIP3 catalytic activity is not required for mRIP3 induced
apoptosis and NF-
B activation. Unlike RIP and RIP2, mRIP3 mRNA is
expressed in a subset of adult tissues and is thus likely to be a
tissue-specific regulator of apoptosis and NF-
B activity. While the
lack of a dominant-negative mutant precludes linking mRIP3 to a known
upstream regulator, characterizing the expression pattern and the in
vitro functions of mRIP3 provides insight into the mechanism(s) by
which cells modulate the balance between survival and death in a
cell-type-specific manner.
 |
INTRODUCTION |
Apoptosis, or programmed cell death,
is critical for the development of many tissue types during
embryogenesis and in the adult is most clearly required for immune
system homeostasis. In fact, deregulation of apoptosis has been
implicated in autoimmune disorders such as rheumatoid arthritis and
Crohn's disease, as well as cancer and AIDS (46). A
critical component of the apoptotic machinery is a superfamily of
plasma membrane-spanning death domain-containing receptors that
includes: TNFR1, Fas receptor (FasR; also called CD95 or Apo1), death
receptor 3 (DR3; also called Apo3, WSL-1, TRAMP, or LARD), DR4 (also
called Apo2 or TRAIL-R1), DR5 (also called TRAIL-R2, TRICK 2, or
KILLER), and DR6. Ligation of death domain-containing receptors by
ligands such as tumor necrosis factor (TNF), Fas, Apo3L, and TRAIL
initiates immune responses and programmed cell death (1, 9, 12,
40, 41, 50). One way that death domain-containing receptors are
regulated is by tissue-specific expression, as TNFR1 and DR4-6 are
expressed in many normal and tumorigenic tissues, whereas a specific
DR3 isoform is expressed in lymphoid tissues (3, 6, 28, 31, 38,
39, 41, 51).
The Fas, TNFR1, and DR3-6 death signaling pathways are initiated by
ligand-induced receptor oligomerization, followed by binding of adapter
molecules mediated through death domain interactions. The TNF
receptor-associated death domain (TRADD) protein is recruited to TNFR1
(22) and DR3 (6). In turn, TRADD recruits the
Fas-associated death domain (FADD) protein, whereas Fas receptor
recruits FADD directly (5, 21). FADD facilitates the
autocatalytic activation of caspase-8 (also known as FLICE [25,
36]). Caspase-8 activates other proteases, such as caspase-3,
culminating in apoptosis (for a review, see references 13,
41, and 50).
Activation of NF-
B is also achieved through the TNFR1 and DR3-6
receptors but not through the Fas receptor. TNFR1 activation of NF-
B
is mediated, in part, through the TRADD-dependent recruitment of a
TNFR-associated factor (TRAF) homo- or heterodimer and a serine/threonine kinase, receptor interacting protein (RIP) (20, 21, 49). The TNFR1-TRADD-TRAF-RIP complex formation results in
the activation of downstream kinases that lead to I
B phosphorylation and subsequent degradation. Once released from I
B, NF-
B
translocates to the nucleus and activates target genes important for
immunity and cell survival (for a review, see references 29,
30, and 32).
As already noted, one key downstream mediator of TNF-mediated apoptosis
and NF-
B activation is RIP. RIP has three domains: an N-terminal
kinase, an intermediate domain, and a C-terminal death domain
(43). In vitro overexpression of RIP induces
NF-
B-dependent transcription (20, 47). In support of the
conclusion that RIP is critical to NF-
B activity,
RIP
/
Abelson-transformed embryonic liver pre-B cells
are unable to activate NF-
B in response to TNF. Whether other
RIP
/
tissues have NF-
B activity was not reported
(26). Interestingly, a RIP subdomain that lies between the
kinase and the death domain is sufficient for NF-
B activation.
Therefore, RIP, like the TRAF proteins, may function as an adapter in
death domain-containing receptor signaling pathways. In vitro, RIP
overexpression also induces apoptosis via a C-terminal death domain.
Although RIP mRNA is expressed in almost all tissues except skeletal
muscle and colon, the RIP
/
mice only undergo extensive
apoptosis in lymphoid and adipose tissues (26). This
indicates that RIP is a tissue-specific cell survival factor in vivo
(26, 43). RIP2 (also known as RICK or CARDIAK), a RIP
homologue, is most highly expressed in the heart, testis, placenta,
spleen, and peripheral blood lymphocytes (24, 33, 45). RIP2
has an N-terminal kinase domain and a C-terminal caspase recruiting
domain (CARD) (19). As with RIP, RIP2 overexpression induces
NF-
B activity and apoptosis, and its functions are likely to be
tissue specific. Thus, identifying RIP homologues present in restricted
tissue groups is important in understanding development and how
viability is regulated in various cell types.
We describe the identification of a new RIP family member, mouse RIP3
(mRIP3). mRIP3 shares a higher degree of sequence homology with RIP2
and displays functional properties similar to RIP and RIP2 in vitro,
since it induces apoptosis and activates NF-
B. mRIP3 has a more
restricted tissue distribution than RIP or RIP2, providing important
evidence that cell viability in different tissue types is regulated by
unique adapters in death signaling pathways. Since mRIP3 contains
neither a CARD nor a death domain, its mechanism of action is likely to
be novel.
 |
MATERIALS AND METHODS |
Library screening and Northern blots.
The mRIP3 cDNA probe
was obtained in a screen of cDNAs amplified with degenerate primers to
the serine/threonine consensus site and the Mg2+-ATP
binding sites of the pelle, raf, and mos kinases. The degenerate primers were used to amplify related sequences from a mouse day-17 embryonic cDNA library (Clontech, Inc., Palo Alto, Calif.) by using
reverse transcriptase PCR (RT-PCR) (48). The same library (3 × 105 plaques) was screened with the PCR probe
containing subdomains I to VIb of the mRIP3 kinase domain radioactively
labeled by random priming with [
-32P]dCTP (3,000 mCi/ml; Amersham, Arlington Heights, Ill.). Three independent clones
were obtained, and both strands were sequenced (Indiana University
Biotechnology Facility). All three phage clones contained an open
reading frame of 1,461 nucleotides that was 99% identical from
nucleotides 260 to 577 to the PCR probe sequence. For Northern
analysis, the same probe (radioactively labeled as described above) was
hybridized to a mouse embryo and an adult Multiple Tissue Northern
Blots (Clontech) according to the manufacturer's recommendations.
mRIP3 mutants.
An mRIP3 site-directed mutant was made by
using the Altered Sites II in vitro Mutagenesis System (Promega,
Madison, Wis.). The mutation changed nucleotide 631 from a G to an A,
resulting in a conserved amino acid substitution of the aspartic acid
(amino acid 161) with an asparagine in the putative
Mg2+-ATP binding site. The mRIP3 deletion constructs were
produced by PCR amplification of the indicated region (see Fig. 1C) and subsequently subcloned into a mammalian expression vector, pcDNA3.1 (Invitrogen, Inc., Carlsbad, Calif.). The kinase-only construct includes the coding region for amino acids 1 to 248, and the tail-only construct includes the coding region for amino acids 1 to 13 and 245 to
486 fused in frame. All four constructs contained a C-terminal Myc-His
tag fused in frame with the mRIP3 coding sequence.
Cell culture and transfections.
For transfections, human
embryonic kidney cells, HEK 293 (American Type Culture Collection)
plated at 106 cells/60-mm dish were maintained in Dulbecco
modified Eagle medium containing 4.5 g of glucose per ml, 10%
fetal calf serum, 100 IU of penicillin per ml, 100 µg of streptomycin
per ml, and 2 mM glutamine. Approximately 30 h later, the cells
were transfected with the indicated DNAs by using the calcium phosphate
method described previously (16). The DNA amount added to
each dish was equalized by the addition of pcDNA3.1 containing no insert.
DNA laddering and apoptosis assays.
Approximately 24 h
after transfection, floating and adherent cells were harvested, and
genomic DNA was obtained by using the Purgene DNA Isolation Kit (Gentra
Systems, Minneapolis, Minn.). Fifteen micrograms of total genomic DNA
from each sample was electrophoresed through 1% agarose by standard procedures.
For cellular death quantification, HEK 293 cells were cultured and
transfected as described above with the addition of pCMV-
-Gal as a
marker of transfection efficiency. At 24 h after transfection, adherent cells and floating cells were harvested.
-Galactosidase (
-Gal) activity was determined for each fraction by using
Galacto-Light Plus (Tropix, Bedford, Mass.) according to the
manufacturer's recommendations. The percentage of the total
-Gal
activity was calculated for the adherent cells in three separate
experiments. The average value is reported with the standard deviation.
A loss of
-Gal activity in the adherent cell fraction represents an induction of apoptosis.
Reporter gene assays.
HEK 293 cells were cultured and
transfected as described above. To inhibit apoptosis, precipitates
contained CrmA, which had no effect on the activation of the three
promoter constructs tested (data not shown). At 15 to 17 h after
transfection, adherent cells were harvested and assayed for luciferase
activity by using the Luciferase Assay System (Promega). As a control
for transfection efficiency,
-Gal activity was measured according to
manufacturer's recommendation (Tropix). Transfection efficiency was
normalized by calculating the ratio of luciferase activity to
-Gal
activity for each test. Each datum point represents the average of four independent tests, with the standard error indicated.
Immunoprecipitation.
HEK 293 cells were transfected with the
indicated constructs in addition to CrmA. At 24 h after
transfection, the adherent cells were harvested and lysed in 1 ml of
immunoprecipitation lysis buffer (10 mM HEPES, pH 7.6; 150 mM NaCl; 5 mM EDTA; 1% Triton X-100; Complete Protease Cocktail [Roche
Biochemicals, Indianapolis, Ind.]). Cell lysates were spun at 14,000 rpm at 4°C for 5 min to remove cellular debris and nuclei. Then, 1 µg of anti-c-myc antibody (mouse monoclonal clone 9E10;
Roche Biochemicals) was added to the lysate and mixed gently overnight
at 4°C. Next, 200 µl of protein A-Sepharose (10% [vol/vol]
slurry) was added, and lysates were mixed for an additional 2 h at
4°C. Immunocomplexed material was isolated by gentle centrifugation,
and the pellets were washed twice with immunoprecipitation wash buffer
(10 mM HEPES, pH 7.6; 150 mM NaCl; 5 mM EDTA; 0.1% Triton X-100;
Complete Protease Cocktail). Immunocomplexed material was subjected to in vitro kinase assays or analyzed by sodium dodecyl sulfate
(SDS)-12% polyacrylamide gel electrophoresis (PAGE) followed by
Western blotting.
In vitro kinase assays.
Immunocomplexed material was
adjusted to contain 20 mM Tris-Cl (pH 7.6), 20 mM MgCl2, 20 mM
-glycerol phosphate, 1 mM sodium orthovanadate, 1 mM benzamidine,
0.4 mM phenylmethyl sulfonyl fluoride, 2 µM ATP, and 10 µCi of
[
-32P]dATP (3,000 mCi/ml). Reactions were incubated at
30°C for 30 min and stopped by the addition of 2× Laemmli buffer.
Reactions were electrophoresed in a SDS-12% PAGE, the gel was stained
with GelCode Blue (Pierce, Rockford, Ill.), and the gels were then dried on Whatman paper. Phosphoproteins were identified by autoradiography.
Western blots.
Immunocomplexed material was subjected to
SDS-12% PAGE by using standard techniques and then transferred to
polyvinylidene difluoride membranes by liquid tank transfer. The
membrane was blocked in 5% milk-KPBS-T (140 mM NaCl, 2.7 mM KCl, 8 mM
Na2HPO4, 1.5 mM KH2PO4,
0.4% Tween 20) for 1 h. The Western blots were probed with a
monoclonal antibody to the myc epitope (Roche Biochemicals) for 2 h at room temperature. The blot was washed three times with KPBS-T and
probed with anti-mouse F(ab)2 fragments conjugated to HRP
(Jackson Immunochemicals, West Grove, Pa.) for 1 h. The blot was
washed three more times in KPBS-T, and the horseradish peroxidase (HRP)
tag was visualized by enhanced chemiluminescence (Amersham).
 |
RESULTS |
mRIP3 is a novel member of the RIP family of serine/threonine
protein kinases.
To identify novel serine/threonine kinases
involved in NF-
B regulation, conserved domains of pelle, raf, and
mos were identified by sequence alignment. Pelle, a serine/threonine
kinase, mediates activation of the Drosophila NF-
B
homologue that controls dorsal and ventral polarity in early
development and immunity to fungal pathogens in adult flies (2,
10, 34). raf and mos are mammalian serine/threonine kinases with
a high degree of homology to pelle. Degenerate primers based upon the
serine/threonine consensus motifs and the Mg2+-ATP binding
site motifs were used to amplify novel gene fragments from an embryonic
day 17 mouse cDNA library. A PCR product identified in the screen
encoded a novel sequence with homology to RIP, which we named mRIP3. A
day 17 mouse embryonic cDNA library was screened for a full-length
mRIP3 clone. Three were identified, each containing an open reading
frame of 1,461 nucleotides, which were identical to the probe sequence
from nucleotides 260 to 577 (Fig.
1A). The N-terminal half
of the deduced amino acid sequence has 29% identity to RIP and 36%
identity to RIP2 (Fig. 1B). In addition, the mRIP3 N-terminal domain
has all of the conserved hallmark features of a serine/threonine kinase
(Fig. 1A and B) (14, 15, 27, 42). In vitro kinase assays
demonstrate that mRIP3 is catalytically active, since
immunoprecipitated mRIP3 undergoes autophosphorylation (see Fig. 3A).
Sequence analysis indicates that the C terminus of mRIP3, unlike RIP
and RIP2, contains neither a death domain nor a CARD and has no
significant homology with any protein presently in the National Center
for Biotechnology Information (NCBI) database.



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FIG. 1.
mRIP3 is a novel serine/threonine kinase related to the
RIP family of kinases. (A) Nucleotide sequence of the mRIP3 cDNA and
putative open reading frame with the number of amino acid residues
listed at the right. Boxed residues are the conserved amino acids found
in serine/threonine kinases. (B) Amino acid sequence alignments of RIP,
RIP2, and mRIP3 N-terminal kinase domains. Roman numerals indicate the
location of the kinase subdomains. Asterisks indicate the invariant
kinase residues boxed in panel A. The analysis was performed by using
the MegAlign program (DNAStar, Inc., Madison, Wis.). (C) Schematic of
mRIP3 constructs. mRIP3 (wild-type protein), ciRIP3 (catalytically
inactive mRIP3 in which the Mg2+-ATP binding site aspartic
acid [amino acid 161] has been changed to asparagine), and tail-only
and kinase-only (two deletion mutants in which each domain is expressed
separately) are depicted. Kinase-only and tail-only proteins include
amino acids 1 to 248 and amino acids 1 to 13 fused to 245 to 486, respectively. (D) mRIP3 is expressed in embryonic mouse tissues. A
Clontech Mouse Multiple Tissue Embryo blot was probed with a
radioactively labeled cDNA probe (see Materials and Methods for
details). (E) mRIP3 mRNA is present in the heart, brain, spleen, lung,
liver, kidney, and testis. The Clontech Adult Mouse Multiple Tissue
Northern blot was probed with a radioactively labeled mRIP3 cDNA probe
(see Materials and Methods for details). Size markers (in kilobases)
are indicated on the left side of the panel.
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|
To determine which mouse tissues express mRIP3, an mRIP3-specific probe
was hybridized to poly(A)
+ RNA isolated from developing
mouse embryos and various adult
tissues. One primary transcript (~1.8
kb) of equal abundance in
all stages of mouse development was detected,
which suggests that
mRIP3 is expressed early in development (Fig.
1D).
Only certain
adult tissues, the liver, lung, spleen, brain, heart, and
testis,
expressed the mRIP3 mRNA (Fig.
1E). The 1.8-kb transcript
corresponded
to the size of the cDNA obtained in the library screening;
therefore,
the library clone appears to contain the full-length mRIP3
transcript.
In adult tissues, a second band slightly smaller than the
1.8-kb
transcript was detected and may represent a splice
variant.
mRIP3-induced apoptosis is FADD and caspase dependent.
The
overexpression of RIP and RIP2 induces apoptosis; therefore, the
ability of mRIP3 to induce apoptosis was examined. A mammalian
expression vector containing the mRIP3 open reading frame was
transfected into HEK 293 cells (16). Genomic DNA was harvested and assessed for fragmentation by agarose gel
electrophoresis. Genomic DNA from cells overexpressing TRADD was used
as a positive control. DNA from cells transfected with TRADD, as well
as with mRIP3, contained fragments that are approximately 200 bp apart, a result indicative of apoptosis (Fig.
2A). Since DNA fragmentation occurs in
response to caspase activation, we determined whether mRIP3-induced
fragmentation was caspase dependent. CrmA, a nonspecific caspase
inhibitor from the cowpox virus (44), was coexpressed with
mRIP3 in HEK 293 cells. CrmA abolished mRIP3-dependent DNA fragmentation (Fig. 2A). FADD, another inducer of apoptosis, is a
component of the TNFR1, the FasR, and the DR3-5 death signal transduction pathways (4-6). Deletion of the FADD death
effector domain (DED) acts in a dominant-negative manner and inhibits
FADD-induced apoptosis (5, 36, 37). To determine whether
mRIP3-induced apoptosis is dependent upon or requires FADD,
dominant-negative FADD (DN-FADD) was cotransfected with mRIP3 into HEK
293 cells. DNA fragments were not detected in cells coexpressing mRIP3
and DN-FADD (Fig. 2A). Thus, mRIP3-induced apoptosis is FADD and
caspase dependent.


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FIG. 2.
mRIP3 induces apoptosis. (A) mRIP3 overexpression
induces DNA fragmentation. HEK 293 cells were transfected with 0.5 or
1.0 µg of TRADD with or without a fourfold excess of CrmA (lanes 2 to
5, respectively). In lanes 6 to 9, HEK 293 cells were transfected with
0.5 or 1.0 µg of mRIP3 with or without a fourfold excess of CrmA. In
the right panel, 2 µg of mRIP3 was cotransfected with 2 µg of FADD
or 10 µg of DN-FADD. At 24 h after transfection, genomic DNA was
isolated and processed as described in Materials and Methods. (B) mRIP3
kinase domain does not induce apoptosis. HEK 293 cells were transfected
with mRIP3, ciRIP3, and tail-only or kinase-only constructs plus 0.25 µg of pCMV- -Gal. -Gal activity was measured for adherent cells
and floating apoptotic cells as described in Materials and Methods. The
mean percentage of -Gal in the adherent-cell fraction was calculated
for three experiments and plotted with the standard deviation. (C)
DN-FADD and CrmA inhibit mRIP3, ciRIP3, or mRIP3-tail-only-induced
apoptosis. HEK 293 cells were transfected with the indicated mRIP3
constructs. Cell lysates were assayed as in panel B.
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In addition to DNA fragmentation, apoptotic cells undergo membrane
blebbing that can be visualized by the release of adherent
cells from
tissue culture dishes (
18). To quantify the proportion
of
cells induced to undergo apoptosis in response to mRIP3, cotransfection
assays were performed with mammalian expression vectors containing
mRIP3 and

-Gal cDNAs. The total number of transfected cells was
determined by measuring the amount of

-Gal activity in the floating
apoptotic bodies and the adherent cells, and then the percentage
of the
total

-Gal activity present in each fraction was calculated.
The
loss of

-Gal activity in the adherent fraction represents
cellular
release and apoptosis. After HEK 293 cells were transfected
with mRIP3,
little

-Gal activity remained in the adherent cells
(Fig.
2B).
mRIP3-dependent apoptosis was reversed by the addition
of DN-FADD or
CrmA (Fig.
2A and
C).
The C-terminal domain of mRIP3 induces apoptosis.
An
intriguing aspect of RIP and RIP2 in vitro activity is that neither
induction of apoptosis nor NF-
B activity is dependent upon kinase
catalytic activity (20, 24, 26, 33, 45, 47). To determine
whether mRIP3 catalytic activity was necessary for the induction of
apoptosis, the conserved aspartic acid residue in the
Mg2+-ATP binding site was changed to asparagine (14,
15, 27, 42). The Asp
Asn substitution had no effect on protein
expression (Fig. 3B) but completely
inhibited the mRIP3 autophosphorylation (Fig. 3A). To determine whether
mRIP3 kinase activity was required for apoptosis,
-Gal and
catalytically inactive mRIP3 (ciRIP3) cotransfection assays were
performed to quantify the apoptotic membrane blebbing and cellular
release. Consistent with results obtained with RIP and RIP2, ciRIP3
induced apoptosis as well as the wild-type mRIP3 (Fig. 2B). To
determine the domain responsible for apoptosis, two deletion constructs
were made. In the mRIP3 kinase-only mutant, the entire tail region
downstream of the last kinase subdomain was deleted. The second
construct, mRIP3 tail-only, deletes the entire kinase domain, leaving
the first 13 amino acids of the coding region fused in frame to the
C-terminal half (Fig. 1C). Both deletion proteins are expressed,
although the tail-only protein migrates at a higher molecular mass than
expected (34 kDa instead of 30 kDa [see Fig. 3B]). Overexpression of
the kinase-only protein did not induce apoptosis, whereas
overexpression of the mRIP3 tail-only protein did induce apoptosis
(Fig. 2B and C). As with wild-type mRIP3, apoptosis induced by ciRIP3
or the tail-only protein was reversed by DN-FADD and CrmA. Therefore,
the mRIP3 C-terminal domain induces death in a FADD- and CrmA-dependent pathway, even though it does not contain a CARD or death domain, which
are present in RIP2 and RIP.

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FIG. 3.
mRIP3 autophosphorylates site(s) in the C-terminal
domain. HEK 293 cells were transfected with the indicated constructs
plus CrmA and Myc-His-LacZ (Invitrogen). Cell lysates were harvested,
and fusion proteins were immunoprecipitated as described in Materials
and Methods. Immunoprecipitates were divided in half and were subjected
to in vitro kinase assays (A) or Western blot analysis (B) to determine
the protein expression level.
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mRIP3 autophosphorylates its C-terminal domain.
To assess
whether the mRIP3 kinase domain was catalytically active, in vitro
kinase assays were performed with immunoprecipitated mRIP3. As seen in
Fig. 3B, immunoprecipitated mRIP3 migrates slightly faster than the
predicted size of full-length mRIP3 (53 kDa). In the mRIP3
immunoprecipitates, a phosphorylated protein that comigrates with mRIP3
was detected after the addition of [
-32P]ATP,
suggesting that wild-type mRIP3 undergoes autophosphorylation. In
contrast, full-length mRIP3 with a mutation in the Mg2+-ATP
binding site has no autocatalytic activity. The catalytic activity of
the mRIP3 deletion constructs was also assessed. As expected,
immunoprecipitates of the tail-only protein did not produce a
phosphoprotein at 34 kDa. Surprisingly, the kinase-only construct also
did not produce a phosphoprotein. The latter observation suggests
either that the kinase-only protein is catalytically inactive due to
disruption of tertiary structure or that the autophosphorylation site
is located in the C-terminal domain. To distinguish between these
possibilities, the tail-only and the kinase-only constructs (each
myc-tagged) were coexpressed in HEK 293 cells. The truncated proteins
were coimmunoprecipitated and subjected to in vitro kinase assays. A
phosphoprotein corresponding to the tail-only protein was detected,
suggesting that the truncated kinase-only mutant is catalytically
active and that the tail-only mutant was a substrate for the kinase
activity (Fig. 3B). These data support the conclusion that mRIP3
autophosphorylation site(s) lie in the C-terminal tail.
mRIP3 induction of NF-
B is inhibited by ciNIK or
TRAF2.
To determine whether mRIP3 could transactivate NF-
B, mRIP3
expression constructs were cotransfected with a luciferase reporter gene under the control of the interleukin-8 (IL-8) promoter (IL-8-LUC) (35), the E-selectin promoter (E-selectin-LUC)
(52), or an artificial promoter containing three tandem
NF-
B sites [HIV-(
B)3-LUC] (17).
E-selectin and IL-8 promoters contain cis-acting elements in
addition to the NF-
B binding site but are considered NF-
B dependent. CrmA was included in these transfections to inhibit mRIP3-induced apoptosis and did not independently induce
transactivation of the reporter constructs (data not shown). mRIP3
overexpression induces NF-
B activity in assays with each of the
reporter constructs (Fig. 4). Induction
of NF-
B was approximately 2.5-fold lower in wild-type mRIP3 than in
wild-type RIP transfectants, as assayed by transactivation of the
HIV-(
B)3-LUC promoter (data not shown). Additionally,
DN-RIP (deletion of the intermediate domain) did not block mRIP3
induced HIV-(
B)3-LUC promoter activity. Catalytically inactive mRIP3 also induced NF-
B activity. Thus, mRIP3 kinase activity is not required for NF-
B activation in vitro. The mRIP3 kinase-only and tail-only proteins have NF-
B inducing activity; therefore, segments that transactivate NF-
B may be embedded within each domain. In contrast to RIP, which transactivates both NF-
B and
AP-1 in vitro, mRIP3 did not activate reporter constructs under the
control of AP-1 (data not shown).

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FIG. 4.
mRIP3 induces NF- B activity. HEK 293 cells were
transfected the indicated expression constructs plus
HIV-( B)3-LUC (A), E-selectin-LUC (B), or IL-8-LUC
(C). Cell lysates were assayed for luciferase and -Gal activity as
described in Materials and Methods. The mean of four experiments with
the standard error is shown.
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To identify other molecules involved in the mRIP3 signal transduction
pathway, mRIP3-dependent NF-

B activation was assayed
in cells
transfected with dominant-negative TRAF2 or dominant-negative
NIK. The
RING finger motif of TRAF2 is critical for NF-

B activation,
and
without this domain TRAF2 blocks its own signal as well as
a
TNF-induced NF-

B activity (
8). TRAF2 deleted for the RING
finger (

TRAF2) completely inhibited IL-8-LUC activation by mRIP3
(Fig.
5A). In addition, a
dominant-negative version of NIK completely
blocked mRIP3-induced
NF-

B activity (Fig.
5B).

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FIG. 5.
mRIP3-induced NF- B activity is blocked by ciNIK and
TRAF2. HEK 293 cells were transfected with the indicated constructs.
Cell lysates were harvested and assayed as described in the legend to
Fig. 4.
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 |
DISCUSSION |
This study identifies and characterizes a novel tissue-specific
kinase, mRIP3, that induces apoptosis and activates NF-
B. The method
used to clone mRIP3 was previously used by our group to clone mouse
pelle-like kinase (mPLK), a homologue of IL-1 receptor-associated kinase (IRAK), a TNF- and IL-1-responsive regulator of NF-
B activity (48, 49). The mRIP3 in vitro function, domain structure, and homology suggest that this protein belongs to the RIP family. Although
the N-terminal kinase domain has 30 to 40% homology to RIP and RIP2,
the mRIP3 C-terminal tail has no significant homology with RIP, RIP2,
or any other protein presently in the NCBI database. Even though the C
terminus is does not contain a CARD or death domain, overexpression of
the truncated C-terminal protein induces apoptosis in a FADD- and
caspase-dependent pathway. In addition to inducing apoptosis, mRIP3
induces NF-
B activity. Catalytically inactive mRIP3 retains the
ability to induce apoptosis and activate NF-
B; therefore, the role
of the mRIP3 kinase activity is unclear. Since a dominant-negative
version of mRIP3 was not identified, the upstream regulators of mRIP3
activity remain unknown. Yet, mRIP3 is expressed in a restricted group
of tissues and is, therefore, a novel cell-type-specific mediator of
apoptosis and NF-
B. Also in distinction to RIP and RIP2, mRIP3 is
unable to activate AP-1-dependent promoters, indicating that RIP family
members have overlapping and distinct functions.
All three RIP family members have a C-terminal domain that induces
death when overexpressed in vitro: RIP has a C-terminal death domain
and RIP2 has a C-terminal CARD motif. Overexpression of the mRIP3
C-terminal tail can induce apoptosis, although this domain has no
significant homology to any known protein or to any previously
identified motif associated with cell death. Therefore, we propose that
mRIP3 may induce apoptosis through a novel mechanism. Fine mapping of
the C terminus is needed to determine the minimal sequence requirements
for this activity. Hydropathy analysis and crystal structure analysis
of CARDs, death domains, and death effector domains show high
-helical content that is postulated to mediate protein-protein
interactions (7, 11, 23). Hydropathy analysis of mRIP3
C-terminal domain predicts very little
-helical secondary structure;
therefore, the mechanism by which mRIP3 induces death may be due to a
domain with a different secondary structure than the previously
identified death-inducing domains.
The mRIP3 C terminus activates apoptosis in a FADD- and
caspase-dependent pathway. FADD mediates the death signal from a
variety of death receptors, including Fas receptor, TNFR1, and DR3-6
(41). Since the Fas receptor is not thought to activate
NF-
B (9), mRIP3 is most likely not a component of the Fas
pathway. In the absence of a dominant-negative mRIP3, we are unable to
exclusively link mRIP3 to a known receptor pathway. mRIP3 may either be
a downstream component of one or more of the known receptor signaling pathways and/or a component of a novel receptor signaling pathway.
mRIP3 activation of NF-
B is blocked by dominant-negative TRAF2 or
dominant-negative NIK. Although NF-
B activity is not defective in
TRAF2 knockout animals, the animals may be able to compensate for the
loss of TRAF2 by using oligomers containing other TRAF members.
Overexpression of DN-TRAF2 can disrupt TNF-induced NF-
B activity as
well as mRIP3 induction of NF-
B, suggesting that TRAF2 somehow
affects mRIP3 signal transduction to NF-
B. In addition, mRIP3 is
unable to transactivate AP-1-dependent promoters; therefore, the TRAF2
effect is most likely due to the ability to DN-TRAF2 to disrupt
activation of the NF-
B signaling pathway.
The mRIP3 kinase domain has all the conserved elements of a
serine/threonine kinase and is catalytically active in vitro. Interestingly, mRIP3 catalytic activity is not required for apoptosis or NF-
B activation. Similarly, RIP kinase activity is not required for apoptosis or NF-
B induction via TNFR1. Thus, the emerging family
of RIP-like kinases appears to have an unidentified use for the kinase
activity. Further analysis will be necessary to determine what role
mRIP3 kinase activity plays in signal transduction.
The lack of expression of mRIP3 mRNA in skeletal muscle and varied
levels of mRNA in other tissues suggest that mRIP3 is a tissue-specific
homologue. Since RIP and RIP2 are expressed in a wide variety of
tissues, whereas mRIP3 seem to be restricted to certain tissues, this
growing family of kinases may be an important point of regulation
between death domain receptor-activated cell death and cell survival.
Thus, mRIP3 is a novel kinase involved in the activation of NF-
B,
but not AP-1, and in the induction of apoptosis. Understanding the
pattern of mRIP3 expression in relation to RIP1 and RIP2 provides
insight into the mechanism through which the balance between survival
and death is modulated in distinct cell types.
 |
ACKNOWLEDGMENTS |
We thank J. M. Kyriakis for the RIP constructs used in this study.
This research was supported in part by National Institutes of Health
grants AI42798 (M.A.H.) and CA67891 and CA73023 (D.B.D.) and in part by
the Project Development Program, Research and Sponsored Programs,
Indiana University at Indianapolis (M.A.H.).
 |
ADDENDUM IN PROOF |
Two independent groups (P. W. Yu et al., Curr. Biol.
9:539-542, 1999; X. Sun et al., J. Biol. Chem.
274:16871-16875, 1999) have recently reported cloning of
human RIP3.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: 1044 West Walnut
St., R4-359, Indianapolis, IN 46202. Phone: (317) 274-7527. Fax: (317) 274-7592. E-mail: mharrin{at}iupui.edu.
 |
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