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Molecular and Cellular Biology, November 1999, p. 7491-7500, Vol. 19, No. 11
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Multiple Cbfa/AML Sites in the Rat Osteocalcin
Promoter Are Required for Basal and Vitamin D-Responsive Transcription
and Contribute to Chromatin Organization
Amjad
Javed,1
Soraya
Gutierrez,1
Martin
Montecino,2
André J.
van Wijnen,1
Janet L.
Stein,1
Gary S.
Stein,1 and
Jane B.
Lian1,*
Department of Cell Biology, University of
Massachusetts Medical School, Worcester, Massachusetts
01655-0106,1 and Departamento de
Biologia Molecular, Facultad de Ciencias Biologicas, Universidad de
Concepcion, Concepcion, Chile2
Received 25 March 1999/Returned for modification 12 May
1999/Accepted 5 August 1999
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ABSTRACT |
Three Cbfa motifs are strategically positioned in the bone-specific
rat osteocalcin (rOC) promoter. Sites A and B flank the vitamin D
response element in the distal promoter and sites B and C flank a
positioned nucleosome in the proximal promoter. The functional
significance of each Cbfa element was addressed by mutating individual
or multiple Cbfa sites within the context of the
1.1-kb rOC promoter
fused to a chloramphenicol acetyltransferase reporter gene. Promoter
activity was assayed following transient transfection and after stable
genomic integration in ROS 17/2.8 osteoblastic cell lines. We show that
all three Cbfa sites are required for maximal basal expression of the
rOC promoter. However, the distal sites A and B each contribute
significantly more (P < 0.001) to promoter activity
than site C. In a genomic context, sites A and B can largely compensate
for a mutation at the proximal site C, and paired mutations involving
site A (mAB or mAC) result in a far greater loss of activity than the
mBC mutation. Strikingly, mutation of the three Cbfa sites leads to
abrogation of responsiveness to vitamin D. Vitamin D-enhanced activity
is also not observed when sites A and B are mutated. Significantly,
related to these losses in transcriptional activity, mutation of the
three Cbfa sites results in altered chromatin structure as reflected by
loss of DNase I-hypersensitive sites at the vitamin D response element and over the proximal tissue-specific basal promoter. These findings strongly support a multifunctional role for Cbfa factors in
regulating gene expression, not only as simple transcriptional
transactivators but also by facilitating modifications in promoter
architecture and chromatin organization.
 |
INTRODUCTION |
Bone tissue-restricted expression of
the osteocalcin (OC) gene during development of the osteoblast
phenotype requires a multiplicity of transactivating factors. Among the
key regulators of OC expression are transcription factors that play
essential roles in embryonic formation of the skeleton and osteoblast
differentiation. These include the Cbfa (core binding factors
)/AML
(acute myelogenous leukemia) family of runt homology domain
(rhd) DNA binding proteins (reviewed in reference
33), the Msx and Dlx homeodomain proteins (28,
51, 63), AP-1 proteins (41), and steroid hormone receptors (reviewed in reference 40).
The Cbfa/AML family of transcriptional activators are critical
factors for the development of hematopoietic and skeletal tissues. Each
of three known genes, Cbfa1 (human AML-3/mouse Pebp2a
[hAML-3/mPebp2a]), Cbfa2 (hAML-1/mPebp2b), and Cbfa3
(hAML-2/mPebp2c), encodes several mRNA splice variants (1, 37,
56). The tissue-specific transcriptional properties of the Cbfa
proteins are in part accounted for by their selective representation in
distinct cellular phenotypes. Cbfa2/AML-1 primarily regulates
expression of genes related to the development of thymus and
hematopoietic tissues, and a null mutant of this gene results in
embryonic lethality due to the absence of definitive hematopoiesis.
Several isoforms of Cbfa1 have been described; one is expressed in
hematopoietic tissues (71), and another is highly expressed
in osteoblast lineage cells of bone (6, 14, 58, 60, 66) and
in hypertrophic chondrocytes (34). Ablation of the Cbfa1
gene in mice reveals the importance of this factor in development of
the skeleton with a consequent absence of mineralized connective
tissues (34, 48, 49). The Cbfa class of rhd proteins was
initially identified in bone as an osseous-cell-specific DNA binding
complex extracted from the nuclear matrix (9, 43). Subsequently, Cbfa proteins were shown to regulate tissue-specific expression of the OC promoter (5, 13). Although
overexpression of the Cbfa1/AML-3, Cbfa2/AML-1, or Cbfa3/AML-2 factors
in nonosseous cells can confer expression of the bone-specific OC gene
(5), the DNA binding activity present in mature osteoblasts
consists primarily of the Cbfa1 gene product (6, 14).
The bone-specific rat OC promoter contains three recognition sites for
Cbfa interactions (sites A, B, and C [43]). Notably, all three motifs bind a similar osteoblast-specific DNA binding complex, first designated NMP-2 (9, 43). While only one Cbfa site fused to a minimal OC promoter is sufficient to confer enhancer activity in osseous and nonosseous cells (5), the presence and positioning of multiple Cbfa sites suggest that spatial
organization of the native OC promoter may be important for interaction
of Cbfa proteins with other OC promoter regulatory factors. For
example, transcription of the rat and human OC genes is strongly
influenced by 1,25-dihydroxyvitamin D. Cbfa sites A and B flank the
vitamin D response element which mediates 3- to 10-fold enhancer
activity of the rat and human promoters. A third Cbfa site, C (also
designated OSE2 in mice [13]), is located in the
proximal promoter (nucleotides [nt]
136 to
130). A nucleosome is
positioned between Cbfa sites B and C in the transcriptionally active
rat OC promoter (46). Because Cbfa factors associate with
the nuclear matrix (57) and can recruit other factors into
complexes (3, 29, 36, 50, 56), Cbfa binding sites may impose
structural constraints on the OC promoter to facilitate interaction and
activities of the proximal and distal regulatory elements (e.g., the
vitamin D response element [VDRE] and TATA domains). The function of
the Cbfa motifs within the context of the native rat OC promoter has yet to be examined.
In these studies, we establish that all three Cbfa elements within the
rat OC promoter contribute to basal transcriptional activity,
suggesting a functional interaction among the three sites. In contrast
to recent studies of the mouse OC promoter (17), the distal
site A (nt
605 to
599) in the rat OC promoter contributes far more
to Cbfa-dependent promoter activity than the proximal site C/OSE2.
Furthermore, the presence of the upstream Cbfa sites is critical for
vitamin D induction of OC promoter activity. Mutation of all three Cbfa
sites results in altered chromatin organization, as reflected by loss
of DNase I-hypersensitive sites in the OC promoter. These findings
suggest that transcriptional activity of the OC gene, which requires
interactions of proximal and distal regulatory elements, may be
facilitated through spatial constraints of the promoter imposed by the
binding of the nuclear-matrix-associated Cbfa factors to critically
positioned recognition sequences.
 |
MATERIALS AND METHODS |
Plasmid constructs.
Site-directed mutagenesis was performed
to incorporate 2-nt substitutions into the core binding motif (ACC) of
each individual Cbfa site (RACCRCW) in the 1.1-kb rat OC promoter
fragment (Fig. 1). Mutations were
generated by a PCR-based approach (4) with the following
synthetic oligonucleotides (Integrated DNA Technologies, Inc.,
Coralville, Iowa): Site A, 5'
CCATCAAAAagACTAAATAAGAAATGCC 3'; Site B, 5'
CATTACTGAttGCTCCTTCCTGGGG 3'; and Site C, 5'
GTCACCAAgaACAGCATCCTTTG 3'. The mutations (indicated
by lowercase letters) within the Cbfa consensus motif (underlined) were
selected such that no other DNA-protein binding sites would be
generated. Plasmids bearing mutations in two of the three Cbfa sites
were generated by replacing the wild-type (WT) sequence with the mutant
by restriction digestion of the
1.1-kb ratOC promoter. The mABC
plasmid bearing mutations in all three Cbfa sites was obtained by
digestion of mAB with BglII-HindIII to
release the WT site C, which was replaced with the mutant site C
plasmid fragment.

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FIG. 1.
Wild-type and mutated Cbfa motifs in the rat OC gene
promoter. The positions and nucleotide numbers of the three Cbfa sites
(A, B, and C) relative to the VDRE, the glucocorticoid response element
(GRE), a TGF -responsive AP-1 site, and two primary transcriptional
elements requisite for basal transcription, the OC box and the TATA
box, are indicated. The positioned nucleosome and DNase
I-hypersensitive sites that are present when the gene is transcribed
are also indicated. The Cbfa core recognition sequence at each site is
indicated in boldface, with mutant nucleotides (mt) designated below.
The lower panel shows the WT oligonucleotide probes, used in gel
mobility shift assays, containing the site A, B, and C Cbfa motifs
within the context of flanking sequences of the rat OC promoter.
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Transient transfection and CAT reporter assays.
Ros 17/2.8
cells were plated at a density of 8 × 104/well in
six-well plates and transfected 24 h later with 3 µg of either WT or mutant plasmids and 100 ng of Rous sarcoma virus luciferase. The
total amount of exogenous DNA was maintained at 5 µg/well with salmon
sperm DNA. The cells were transfected with DNA in the presence of 50 µg of DEAE-dextran (Pharmacia, Piscataway, N.J.)/ml and 50 µg of
chloroquine (Sigma, St. Louis, Mo.)/ml and incubated at 37°C for
2.5 h with occasional swirling. The transfection mix was
aspirated, and the cells were shocked for 90 s with 10% glycerol
in serum-free F12 medium, washed twice with phosphate-buffered saline
(PBS), and then incubated at 37°C in F12 medium supplemented with 5%
fetal calf serum (Gibco Life Technology, Grand Island, N.Y.) for 24 to
48 h. The cells were washed twice with ice-cold PBS and lysed with
300 µl of reporter lysis buffer (Promega Corp., Madison, Wis.) at
room temperature for 30 min. The cell lysates were collected and stored
at
70°C or used immediately for chloramphenicol acetyltransferase
(CAT) assays as described previously (18). Luciferase
activity was determined in the same lysate with luciferase assay
reagents from Promega Corp. Luminescence was quantitated with a
Monolite TM 2010 instrument (Analytical Luminescence Laboratory, San
Diego, Calif.).
Construction of stable cell lines.
Ros 17/2.8 cells with
genomically integrated WT and Cbfa mutant constructs were generated by
the calcium phosphate method. For each construct, four 100-mm-diameter
plates were transfected with 15 µg of the
1.1-kb OC-CAT plasmid and
5 µg of pCEP-4 (Invitrogen, San Diego, Calif.) encoding the
hygromycin B phosphotransferase gene. The cells were harvested at 95%
confluency and replated for selection in medium containing 55 U of
hygromycin B (Calbiochem, La Jolla, Calif.)/ml based upon preliminary
killing curves. Resistant colonies (60 to 75) from each plate were
pooled and propagated as polyclonal cell lines. Each pool was expanded
until 20 × 108 cells were available for preparation
of frozen stocks. The cells were routinely maintained in medium
containing hygromycin B for measuring CAT activity and responsiveness
to steroid hormones and growth factors. Stable cells were plated at
2 × 105/well in a six-well plate and treated with
10
8 M 1,25-dihydroxyvitamin D3. The cells
were washed twice with PBS and lysed by adding 300 µl of reporter
lysis buffer (Promega Corp.) at room temperature for 30 min. CAT
activity assays were performed as described above.
Nuclear extracts and electrophoretic mobility shift assay.
Nuclear extracts from Ros 17/2.8 cells were prepared as described
previously (12) with 0.45 M KCl for extraction. For the electrophoretic mobility shift assay, 10 mM HEPES (pH 7.9), 0.2 mM
EDTA, and 100 mM KCl were combined with 10 µl of a DNA mixture containing 20 fmol of probe DNA and 1 µg of poly(dI-dC) · (dI-dC) as a nonspecific competitor and incubated at room temperature for 30 min. For competition experiments, unlabeled double-stranded oligonucleotide (240 to 2,000 fmol) was added to the binding reaction mixture with the other components. Samples were loaded without tracking
dye onto a 4% acrylamide-bisacrylamide (30:1) gel in 0.5× Tris
borate-EDTA. Electrophoresis was performed for 2 to 2.5 h at 200 V. The gels were dried and subjected to autoradiography.
Studies of DNase I-hypersensitive sites.
DNase I digestion
analysis was performed according to the indirect end-labeling method
(65). ROS 17/2.8 cells were plated at a density of
106 per 100-mm-diameter plate, and nuclei were isolated on
day 9 by Dounce homogenization (loose pestle) in 8 volumes of RSB
buffer (10 mM Tris HCl (pH 7.4), 10 mM NaCl, 3 mM MgCl2)
with 0.5% (vol/vol) NP-40. To evaluate cell lysis, an aliquot of
nuclei was stained with 0.4% Trypan blue 1:1 (vol/vol).
The nuclear suspension was diluted by adding an equal volume of RSB
buffer, and nuclei were collected by centrifugation. The
pelleted
nuclei were resuspended in RSB buffer, and the DNA concentration
was
estimated by absorption at 260 nm. Aliquots of 20
A260 units
were digested with increasing
concentrations of DNase I (0 to
5 U) (Worthington Biochemicals,
Freehold, N.J.) in a 1-ml final
volume for 10 min at room temperature.
The reaction was stopped
by adding EDTA, sodium dodecyl sulfate, RNase
I (Promega), and
proteinase K (Fisher Biotech, Fairlawn, N.J.) to final
concentrations
of 25 mM, 0.5% (vol/vol), 1 U/ml, and 200 µg/ml,
respectively,
and incubated at 37°C overnight. The samples were
extracted once
with phenol-chloroform-isoamyl alcohol (25:24:1) and
twice with
chloroform-isoamyl alcohol (24:1). Nucleic acids were
precipitated
with 2.5 volumes of ethanol at

70°C for at least
4 h and then
resuspended in 25 mM Tris, pH 7.8. DNA was digested
with
BamHI
or
XbaI (4 U/µg of DNA) to release a
4.3-kb fragment from the
OC gene (
45) or a 2.78-kb fragment
from the chromosomally integrated
pOCZCAT fusion gene, respectively
(
19). The digested DNA was
extracted with phenol-chloroform,
precipitated with ethanol, and
resuspended in 25 mM Tris, pH 7.8. DNA
samples (10 µg) were electrophoresed
in a 1.2% agarose gel (Bio-Rad,
Hercules, Calif.) and then transferred
to a nylon membrane (Hybond N+;
Amersham Pharmacia Biotech, Arlington
Heights, Ill.) according to the
manufacturer's
instructions.
Hybridization probes were prepared by restriction digestion of pOC 3.4 (
38), containing the rat OC gene and flanking sequences,
with
XbaI-
BamHI and digestion of pOCZCAT with
XbaI-
NcoI. The probes
were labeled by the
random-primer method with [

-
32P]dCTP and the Prime-It
II kit (Stratagene, La Jolla, Calif.).
Hybridization was carried out at
65°C with 1 ng of probe (specific
activity, 10
9 cpm/µg)
per 10-cm
2 membrane. The blots were analyzed by
autoradiography or by using
a STORM PhosphorImager (Molecular Dynamics,
Sunnyvale, Calif.).
Statistical representation and analysis of the data.
The
data are displayed as box-and-whisker plots (25), where the
length of the bar represents the range of observations between the
first and third quartile (i.e., the interquartile range [IQR]). The
length of the whiskers represents the interval between the first or
third quartile and the most extreme observation that does not meet the
definition for an outlier, i.e., a value more than 1 1/2 IQRs from
either the first or third quartile, depending upon whether the
observation is above or below the median.
The distributional characteristics of promoter activities were
evaluated graphically by using histograms and the Kolmogorov-Smirnov
one-sample test for normality (
53). If data were not
normally
distributed, monotonic transformations were applied (i.e.,
natural
logarithms) to achieve normality. The significance of Cbfa
sites
to promoter activity was evaluated by analysis of variance for
mixed models with restricted estimation by maximum likelihood
(
42).
 |
RESULTS |
Full basal activity of the OC promoter requires the distal Cbfa
sites.
A single Cbfa element is sufficient to confer
tissue-specific transactivation of the proximal OC promoter (5,
14). To address the contributions of the multiple Cbfa sites in
the native rat OC promoter to OC transcription, we carried out
site-directed mutagenesis of each of the three Cbfa elements,
designated sites A, B, and C (Fig. 1). Initially, we established 2-nt
substitution mutations in the core of each OC Cbfa site which abrogate
bone-specific Cbfa binding activity (Fig.
2). The appropriate WT and mutant oligonucleotide sequences for each site (shown in Materials and Methods) were examined in gel mobility shift assays with nuclear extracts from ROS 17/2.8 rat osteosarcoma cell lines. These extracts contain abundant levels of Cbfa1, which forms an osteoblast-specific complex that can be supershifted by Cbfa1-specific antibody (5, 6). Figure 2A demonstrates that each mutation results in loss of
the Cbfa binding complex. Because competition for binding to the WT
sequence is not observed in the presence of 80-fold excess (1 nM) of
mutant oligonucleotide representing site A, B, or C (Fig. 2B, lanes 5 to 8), the mutations have completely abrogated Cbfa binding.

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FIG. 2.
Mutations of the three rat OC Cbfa sites result in loss
of Cbfa binding. (A) Formation of the osteoblast-specific complex from
nuclear extracts of ROS 17/2.8 cells compared with oligonucleotides
containing WT sequences representing Cbfa site A (lane 1), site B (lane
3), and site C (lane 5) and mutated (M) Cbfa sequences of sites A (lane
2), B (lane 4), and C (lane 6) in gel mobility shift assays. Cbfa
complexes are indicated by solid arrowheads. A nonspecific complex
(site B) is indicated by an open arrowhead. (B) Site A, site B, and
site C show corresponding competition assays for each Cbfa site with
the WT sequence as probe with increasing amounts (0, 20, 60, and 80×)
of either WT oligonucleotide (lanes 1 to 4, respectively) or Cbfa
site-mutated oligonucleotides (lanes 5 to 8, respectively) as the
competitor.
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The locations of the Cbfa sites within the rat OC promoter
(
43) suggest different activities, while promoter deletion
analysis
(
5,
27) indicates redundant function for the
multiple Cbfa
sites. The functionality of each site was therefore
tested following
transient transfection of the WT and mutant OC
promoter (

1.1-kb)
constructs into ROS 17/2.8 cells (Fig.
3B and D).
Activity of
the OC WT promoter was compared to activity of promoters
having
single or multiple Cbfa site mutations. While mutation of each
of the sites reduced promoter activity compared to that of the
control,
mutation of the proximal site C had the least effect
(83% of WT;
P value of 0.206 is nonsignificant). Mutation of sites
A and
B independently or of the two sites AB and AC reduced promoter
activity
to approximately 50% of that of the WT, but high statistical
significance of the effect was found in these transient assays
only for
mAB (
P < 0.001). Transcriptional activity of the Cbfa
three-site mutation, mABC, was decreased to 40% of the control
level
(
P < 0.001).
To determine the contribution of the Cbfa sites to OC gene promoter
transcription within a genomic context, we established
a series of ROS
17/2.8 cell lines which contain stably integrated
OC-CAT reporter gene
constructs with single, paired, or triple
Cbfa mutations in the

1.1-kb rat OC promoter (Fig.
3A). As described
in
Materials and Methods, we examined four independent pools of
cell lines
for each construct to compensate for positional effects
on promoter
activity. Due to site-of-integration effects and copy
number, basal
activity for each cell pool varied among the cell
lines over a twofold
range (data not shown). Figure
3C shows that
mutation of each of the
individual Cbfa sites resulted in significantly
decreased promoter
activity, with reductions in transcription
greater than those observed
following transient transfection (Fig.
3B). Again, mutation of the
proximal site C minimally affected
transcription; even as a stable
integrant in osteoblasts (
P <
0.05). Mutations
involving site A had a more pronounced effect
in decreasing promoter
activity in the stable cell lines (from
20 to 30% of that of the
control;
P < 0.001). This conclusion
is further
supported by the finding that transcription of mBC
is only reduced to
80% of that of the control, indicating that
site A contributes a
significant level of Cbfa-dependent activity
to the OC promoter (Fig.
3C). Because all possible mutation groups
were examined and sample
sizes within a group were large, the
statistical significance of the
contributions of all Cbfa sites
to OC promoter activity could be
compared (Table
1). On the basis
of
whether each of the sites is present or absent in a construct,
the
effect of site A or B, but not C, was always significant.
Furthermore,
two-way analysis of variance of the least-squares
mean of each group
revealed a significant interaction between
sites A and B. There is a
two- to threefold-greater effect contributed
by site A when site B is
present and by site B when site A is
present. Taken together, these
findings indicate that all of the
Cbfa sites in the rat OC promoter
contribute to basal transcription
and that the distal sites A and B
play predominant roles in supporting
promoter activity within a
chromosomal context.

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FIG. 3.
Requirement for multiple Cbfa sites for maximal
transcriptional activity of the rat OC gene promoter. (A) Rat OC 5'
sequences ( 1.1 kb) containing either single or multiple site
mutations are schematically illustrated. Single-site mutations are
designated mA, mB, or mC; two-site mutations are designated mAB, mAC,
or mBC; and mABC is the triple mutation. (B) Following transient
transfections in ROS 17/2.8 cells, normalized CAT reporter activity of
the WT promoter and promoters with Cbfa site mutations are compared.
Reporter activity was assayed 24 h after transfection of ROS
17/2.8 cells. The [14C]CAT activity was quantitated by a
Betascope analyzer (Betagen, Waltham, Mass.) and normalized to that of
luciferase. (Aliquots of the lysate were assayed for luciferase
activity to normalize CAT activity). Each bar represents the LS
mean ± standard error of the mean (SEM) (n = 12).
(C) Activity of WT and Cbfa site-mutated promoters stably
integrated into ROS 17/2.8 cells. Each group represents promoter activity in four independent cell lines,
with each cell line assayed in four separate experiments in triplicate.
The cells were harvested 3 days after being plated as the cells reached
monolayer confluency for quantitation of CAT activity (normalized to
total protein of the cell lysate). Each bar represents the LS mean ± SEM (n = 18). The pGEM control represents a
promoterless CAT-containing stable cell line. Single asterisks,
statistically less than WT, P < 0.001; double
asterisks, P < 0.01.
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Functional compensatory activity of the three Cbfa sites in OC
transcription.
The mutagenesis studies suggest that the distal
sites A and B provide a significant level of functional activity and
that the proximal site C does not contribute equally to basal promoter activity. To further assess the involvement of each of the three Cbfa
sites in transcription of the rat OC gene, we examined the consequences
of forced expression of Cbfa1 on activity of WT and mutant promoter
constructs in nonosseous cells, which do not express OC. In HeLa cells,
for example, OC promoter activity is very low, and transcription
factors necessary for bone tissue-specific expression are unlikely to
be present. Cbfa forced expression in HeLa cells results in detectable
WT OC promoter activity (3.3-fold induction [Fig.
4]); as expected, mutation of all three
Cbfa sites dramatically reduces Cbfa-dependent OC promoter activity. In
contrast, mutation of the single site A, B, or C resulted in induction
of OC promoter activity to approximately the same extent, but somewhat
less than WT. Together, these findings suggest that any one of the
three sites can support induction of the OC promoter when cellular
levels of Cbfa1 are available. However, compensatory effects are
partial, indicating that all three sites are necessary for maximal
promoter activity. The level of induction by forced Cbfa expression for each of the mutations compared to the WT promoter in ROS 17/2.8 cells
is similar to that in HeLa cells (data not shown). Thus, these findings
indicate that Cbfa-dependent induction of promoter activity at each
Cbfa site is similar, suggesting functional compensatory activity.
Notably, the mutational analyses support a selective contribution of
the distal sites versus the proximal site C to basal promoter activity
(Fig. 3).

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FIG. 4.
Cbfa1-mediated transactivation of OC promoters
containing mutated Cbfa sites in HeLa cells. Cbfa1 expression plasmid
(0.5 µg) and indicated OC-CAT plasmids (2.5 µg) were cotransfected
into HeLa cells (n = 9 for each sample) and assayed
36 h following transfection. The CAT activity was quantitated by
direct counting with a Betascope analyzer (Betagen). CAT activity was
calculated as percent conversion and normalized for luciferase values
used as internal controls. A statistically significant difference
(P < 0.001) of the mABC group from WT is indicated by
an asterisk.
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Vitamin D enhancement of OC transcription is dependent on Cbfa1
regulatory elements.
Our mutational studies suggest that the two
distal Cbfa sites which flank the VDRE are essential to basal
expression of the OC gene (Fig. 3C). The VDRE is a strong enhancer of
OC transcription, and vitamin D responsiveness necessitates interaction
of the VDR-RXR heterodimer complex at the distal VDRE (nt
461 to
441) with TFIIB and other general transcription factors at the
proximal TATA binding element (nt
32 to
29). We therefore addressed
the potential contribution of Cbfa sites in mediating vitamin D
responsiveness within the context of chromosomal integration of the OC
promoter in stable cell lines. The importance of examining vitamin D
responsiveness as influenced by the Cbfa motifs within a chromosomal
context is supported by our previous studies demonstrating the presence of a positioned nucleosome between Cbfa sites B and C on the OC promoter and increased DNase I hypersensitivity in response to vitamin
D (45, 46).
Expression of the stably integrated WT promoter was enhanced by vitamin
D from four- to sevenfold in the four stable cell
line pools,
independent of basal promoter activity (Fig.
5A).
In striking contrast, the four
stable cell lines in which all
three Cbfa sites of the integrated OC
promoter were mutated (mABC
cell lines, designated T
1 to
T
4 [Fig.
5A]) exhibited nearly complete
inhibition of
vitamin D stimulation of transcription. This abrogation
of vitamin D
responsiveness of the mABC promoter was also observed
following
transient transfection of the WT and mABC promoters
into ROS 17/2.8
cells. In three independent experiments (total
n = 18),
the mean fold induction of the WT OC promoter by
10
8 M 1,25(OH)
2D
3 in
24 h is 7.4 (± 0.2 standard deviation [SD])
but only 1.6 (± 0.3 SD) for the mABC construct.

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FIG. 5.
Cbfa sites regulate vitamin D-mediated transcription of
the OC gene. (A) Loss of vitamin D (Vit-D) responsiveness of the rat OC
promoter with three mutated Cbfa sites (mABC). Four independent ROS
17/2.8 cell lines with stably integrated WT promoters (WT1,
WT2, WT3, and WT4) or with the
triple Cbfa site mutation (mABC) (T1, T2,
T3, and T4) were treated 3 days after being
plated for 24 h with 10 8 M
1,25(OH)2D3 and assayed for CAT activity
normalized to total protein in the cell lysate. Each bar represents the
mean value of three determinations. (B) Distal Cbfa sites A and B in
the OC promoter are required for vitamin D-induced transcriptional
activity. ROS 17/2.8 cell lines containing stably integrated WT and the
indicated Cbfa mutant promoter-CAT reporter constructs were examined
for responsiveness to vitamin D (10 8 M
1,25(OH)2D3; 24 h). pGEM control is a
promoterless-CAT stable cell line. The effect of vitamin D (vitamin
D-treated/control untreated cells) is reported as fold induction. Each
bar represents pooled data from three or four separate cell lines, each
assayed in triplicate in two to four independent experiments. Asterisk,
P < 0.001 (statistical significance of mutant cell
line versus WT). The error bars indicate SD.
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We then proceeded to examine the contribution of each Cbfa site to
vitamin D-dependent promoter activity. Mutation of any
one of the
single Cbfa sites (mA, mB, or mC) decreased the vitamin
D response from
5-fold induction (WT) to 2.5- and 2.8-fold induction
for mutant sites A
and C, respectively, and 1.9-fold stimulation
with mutant site B (mB)
(Fig.
5B). When vitamin D responsiveness
of the paired mutations was
examined (Fig.
5B), the contribution
of the distal sites to functional
activity of the VDRE was further
defined. Notably, the mAB two-site
mutation nearly eliminated
vitamin D stimulatory activity, similar to
the effect of the triple
mutant. In contrast, two-site mutations
involving the proximal
site C (mAC and mBC) had less effect, reducing
vitamin D responsiveness
to 2.5- and 3-fold induction, respectively,
similar to the consequences
of the single site C mutation. Thus, these
results confirm a critical
role for sites A and B, not only in basal
expression of the OC
promoter but also in vitamin D regulation of OC
promoter activity.
These findings suggest that the Cbfa sites support
structural
organization of the OC promoter that is permissive for
interaction
of the distal VDRE and proximal TATA binding factors
required
for enhancer activity of the VDR-RXR complex (
21,
23,
57).
Cbfa binding factors contribute to chromatin organization of the OC
promoter.
Previous studies carried out by our laboratory have
shown the presence of DNase I-hypersensitive sites in the native OC
promoter as well as in the transgene of stable cell lines with an
integrated OC promoter-CAT gene (pOCZCAT) (45-47). These
promoters exhibit two DNase I-hypersensitive sites, designated DHS I in
the basal promoter region and DHS II in the distal promoter
encompassing the VDRE. The nuclease accessibility of both regions is
functionally related to the extent to which the OC gene or the
transgene (pOCZCAT) is expressed. Based on these findings and the
observation that the triple Cbfa mutant (mABC) does not respond to
vitamin D, we examined the effect of this mutation on the nuclease
hypersensitivity of the OC promoter. Figure
6 shows the consequences of DNase I digestion of nuclei from the ROS 17/2.8 cell line carrying the wild-type
1.1-kb rat OC promoter transgene. Two DNase
I-hypersensitive sites are present both in the control cells and in
cells treated with vitamin D (Fig. 6B). An increase in DNase I
hypersensitivity is observed following vitamin D treatment. In
contrast, DNase I-hypersensitive sites are not detected in nuclei from
either untreated or vitamin D-treated cells carrying the mABC OC
promoter-CAT transgene (Fig. 6B). The specificity of the DNase
I-hypersensitive sites was confirmed by reprobing the blot with a
0.4-kb fragment (XbaI-BanI) that detected the
vector backbone (data not shown).

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|
FIG. 6.
DNase I-hypersensitive profile of WT and mutated OC
promoters. (A) Diagrammatic illustration of the OC promoter-CAT
transgene showing the region used as a probe. (B) Nuclei were isolated
from untreated (left-hand panels) and vitamin D-treated
[10 8 M 1,25(OH)2D3 for 24 h) (right-hand panels) ROS 17/2.8 stable cell lines having the 1.1-kb
rat WT, mABC, or mBC OC promoter. Nuclei were incubated with increasing
amounts of DNase I (from 0 to 5 U per 20 optical density at 260 µm
units of nuclei) for 10 min at room temperature. The DNase I
concentrations (U/ml) are designated above the lanes of the Southern
blot. The purified DNA was digested with XbaI to detect the
transgene. (C) DNase I hypersensitivity of the endogenous OC promoter
from the mABC stable cell line. The BamHI-XbaI
fragment of the OC gene used as a probe is shown above. All samples (10 µg) were fractionated electrophoretically in a 1.2% agarose gel, and
the blots were hybridized with the corresponding probe. Lane M, markers
from DNA digested with HindIII and EcoRI.
The two DNase I-hypersensitive sites (DHS I and DHS II) are indicated
by solid arrowheads.
|
|
To ensure that the complete loss of DNase I hypersensitivity in mABC is
not due to a nonspecific alteration of the promoter,
we examined the
DNase I profile of mutant BC, which retains significant
basal activity
and vitamin D responsiveness (Fig.
3C and
5B).
Interestingly, we
observed DNase I hypersensitivity in the distal
domain (DHS II), which
encompasses the VDRE. Thus, there is a
correlation between vitamin
D-enhanced transcription and the level
of DNase I hypersensitivity. The
competency of the mBC cell line
to respond to vitamin D suggests that
the ability of the VDR receptor
complex to interact with its specific
binding sequence in the
OC promoter remains intact. Significantly, in
mBC, the proximal
DHS I which resides over the mutated site C is very
weak. Therefore,
modifications in DNase I hypersensitivity are linked
to mutation
of Cbfa sites. Together, these results demonstrate that the
chromatin
structure of the OC promoter requires the integrity of the
Cbfa
sites.
The specificity of the contribution of Cbfa elements to chromatin
structure is further demonstrated by the DNase I hypersensitivity
of
the native gene in the mABC cell line (Fig.
6C). The endogenous
OC gene
in the mABC mutant cell line retains basal DNase I hypersensitivity,
which increases upon treatment with vitamin D. Similar responsiveness
of the endogenous OC gene to DNase I was observed in the cell
line
carrying the WT transgene (data not shown). A schematic illustration
summarizing these modifications in DNase I hypersensitivity of
the WT
and mABC OC promoters is presented in Fig.
7. These studies
provide compelling
evidence that Cbfa factors are determinants
of chromatin organization
that supports transcriptional activity
of the OC promoter.

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[in a new window]
|
FIG. 7.
Illustration of modifications in chromatin organization
of the rat OC promoter. The top line diagrams random distribution of
nucleosomes across 1.7 kb of the rat OC promoter in cells that do not
express OC, as established by micrococcal nuclease digestion
(46). The second line diagrams the actively transcribed OC
promoter, showing the span of two DNase I-hypersensitive (DHS) sites
together with regulatory elements in the proximal and distal DHS sites.
The extent of DNase I hypersensitivity is compared for basal OC
expression (WT-basal) and vitamin D-treated (WT-vitamin D-enhanced)
osteoblasts (ROS 17/2.8) cells. No DHS, undetectable DNase I
hypersensitivity in nonosseous cells or undetectable mABC OC promoter
in osteoblasts.
|
|
 |
DISCUSSION |
The OC gene promoter provides a blueprint for defining factors
that regulate osteoblast-specific expression of the gene. These factors
contribute to the complexity of molecular mechanisms associated with
development of the osteoblast phenotype. We and others (6, 7, 28,
61-63) have shown by deletion analysis of the rat OC promoter
from
1.7 kbp to
108 bp that a significant loss of transcriptional activity occurs when the proximal Cbfa site C is not present. This
observation suggests either that there is functional redundancy of the
Cbfa sites or that the distal recognition sites do not contribute to
promoter activity. To understand the contribution of Cbfa factors to
regulation of OC gene transcription, it was necessary to address the
function of the multiple Cbfa sites in the native OC promoter.
Our studies have established the importance of the distal Cbfa sites A
and B to activity of the rat OC promoter in a genomic context. We used
a series of cell lines with stable integrants of the
1.1-kb OC
promoter or with site-specific mutations of each Cbfa sequence alone,
as well as combinatorial mutations of two or all three Cbfa sites.
While transient-transfection assays have greatly expanded our knowledge
of transcriptional mechanisms regulating gene expression, such
transfected promoter-reporter constructs may not completely reflect the
regulation of endogenous genes. In stable integrants of the OC promoter
in ROS 17/2.8 cells, mutation of either site A or B results in a
significant loss of promoter activity. Mutation of the proximal site C
(OSE-2 [13]) alone has the least effect in modifying
bone-specific basal activity of the OC promoter, suggesting strong
compensatory activity by the distal Cbfa sites. However, when we
carried out Cbfa expression studies to confirm the importance of each
Cbfa site, the results demonstrated that all three sites are necessary
for maximal basal promoter activity. The more pronounced effects of the
Cbfa site mutations observed when the OC promoter is stably integrated
into the genome of ROS 17/2.8 cells suggest that the chromatin context strongly influences activity of the promoter.
Our results indicate that regulatory elements other than Cbfa sites
contribute to OC gene transcription. We find that in transient assays,
40% of wild-type OC promoter activity remains when Cbfa sites A, B,
and C are mutated (mABC [Fig. 3B]), while 20% of activity is
retained by the mABC mutant in stable cell lines (Fig. 3C). This
residual promoter activity of mABC is consistent with results from
promoter deletion analysis of the rat OC gene (26, 27) and
reflects the contribution of the highly conserved OC box I (
99 to
76) regulatory element, which is also necessary for tissue-specific basal expression.
The major products of the various Cbfa/AML genes have several shared
domains that contribute to transcriptional regulation of
tissue-specific genes; the Cbfa factors may function as architectural proteins that serve to assemble macromolecular complexes involved in
gene regulation. These structurally and functionally homologous segments include the conserved DNA binding rhd and transcriptional activation and suppression domains (24, 35, 44), as well as
subcellular targeting signals (29, 69). The
promoter-organizing functions of Cbfa factors may involve
Cbfa-interacting proteins, including Cbf
(5, 6, 32, 56),
ALY (10), and Groucho/TLE (3, 22, 36,
60). Interestingly, Groucho/TLE proteins have been
shown to contact the N terminus of histone H3 (15, 50). The
Cbfa class of transcription factors has also been shown to associate
with the nuclear matrix (29, 68, 69), the structural scaffold of the nucleus, through a 31-amino-acid nuclear matrix targeting sequence (NMTS) in the C terminus of full-length Cbfa isoforms (reference 69 and unpublished data). The
NMTS directs Cbfa factors to transcriptionally active subnuclear sites
(68), similar to the NMTS-dependent targeting of the rat
glucocorticoid receptor (59). Together, the multiple
protein-protein interaction domains of Cbfa factors may operate by a
promoter architectural mechanism to functionally support
physiologically regulated expression of the tissue-specific OC gene.
We have shown that mutation of the Cbfa sites results in a striking
loss of responsiveness of the rat OC promoter to vitamin D and other
physiological mediators of osteoblast differentiation, including
glucocorticoids and TGF
(preliminary data [30]). These signalling molecules regulate OC transcription through, respectively, VDR-RXR, GR, and AP-1 factors that act at non-Cbfa elements. Furthermore, mutation of the three Cbfa sites results in
complete loss of DNase I hypersensitivity and the dynamic vitamin D-dependent modifications in chromatin structure which are essential for normal activity of the OC promoter. Indeed, a similar absence of
DNase I hypersensitivity is observed in the silent endogenous OC gene
within nonosseous cells (Fig. 7). Therefore, the competency of this
promoter to undergo chromatin remodeling for maximal transcriptional responsiveness involves key contributions of Cbfa factors. Our results
are consistent with the concept that Cbfa factors contribute to a
promoter conformation that mediates accessibility or recruitment of
factors to DNA regulatory elements.
Steroid hormone-dependent transcriptional activation is known to
involve a modification in chromatin organization. In the rat OC gene,
we have established that binding of the vitamin D-liganded VDR-RXR
complex to the VDRE in the distal promoter induces architectural changes in chromatin that facilitate requisite interactions with the
proximal basal promoter complex (21, 72). Glucocorticoid regulation of the mouse mammary tumor virus promoter (8, 16, 55,
64, 67) involves the GR-mediated conversion of a repressive chromatin state to an open configuration allowing NF1 and Oct1 access
to their binding sites. Subsequently, activation of transcription occurs through interactions of GR with the TFIID basal complex (2,
54). The results presented here suggest that interaction of the
OC promoter with the nuclear matrix-associated Cbfa1 factor is an
essential step for steroid hormone-dependent activity of the OC promoter.
The significance of the three Cbfa sites in the rat OC promoter, two of
which flank the VDRE, in contributing to maximal expression and
physiologic responsiveness of the gene is highlighted by the opposing
effects of vitamin D on the mouse OC promoter (11, 39, 70).
Vitamin D does not mediate enhanced activity of the mouse OC promoter
(70), and in fact, the mouse OC VDRE exhibits weak
downregulation by the hormone (39). Consistent with this finding, the mouse VDRE sequence is not flanked by two functional Cbfa
sites as occurs in the rat OC promoter. In the mouse OC promoter, the
distal Cbfa site resides upstream of the VDRE in a position similar to
that in the rat promoter (nt
608 to
602), but site B (
441 to
435 in the rat), which is critically involved in vitamin D regulation
of the rat promoter, is not present in the mouse promoter
(17). Mutational analysis of the mouse Cbfa sites has established that the distal site contributes far less to transcription than the proximal Cbfa/OSE2 site (17). Clearly, our studies demonstrate that the distal Cbfa A and B sites are important for basal
activity of the rat OC promoter and essential for vitamin D
responsiveness. The subtle differences between mouse and rat in the
organization of Cbfa motifs may be necessary to regulate OC expression
and responsiveness to physiologic mediators of bone formation and
turnover at different levels, depending on the species. Thus, caution
must be exercised when generalizing conclusions with respect to
regulation of OC promoters from different species.
Many tissue-specific genes contain multiple Cbfa sites which are
strategically positioned relative to other cis-acting
elements (20, 31, 52). This heterogeneity in promoter
organization of Cbfa-dependent genes, together with a series of
context-dependent activation domains in the C termini of Cbfa factors,
suggests an inherent difficulty in predicting the transcriptional
effect of a given Cbfa site. This molecular complexity provides the
necessary versatility to accommodate the different biological functions of the broad spectrum of Cbfa-regulated genes. Our studies provide the
first evidence that Cbfa1 factors in osteoblasts regulate bone
tissue-specific transcription not only through their DNA binding
activities but also as nuclear-matrix-associated factors that mediate
chromatin organization and facilitate transcriptional activity by
association with other transactivating factors.
 |
ACKNOWLEDGMENTS |
We thank Judy Rask for editorial assistance.
This work was supported by grants from the National Institutes of
Health (AR39588, AR45689, DE12528, and TW00990).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Cell Biology, University of Massachusetts Medical School, 55 Lake Ave. North, Worcester, MA 01655-0106. Phone: (508) 856-5625. Fax: (508) 856-6800. E-mail: Jane.Lian{at}umassmed.edu.
 |
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