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Molecular and Cellular Biology, December 1999, p. 8180-8190, Vol. 19, No. 12
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Grx5 Glutaredoxin Plays a Central Role in
Protection against Protein Oxidative Damage in
Saccharomyces cerevisiae
Maria Teresa
Rodríguez-Manzaneque,
Joaquim
Ros,
Elisa
Cabiscol,
Albert
Sorribas, and
Enrique
Herrero*
Departament de Ciències Mèdiques
Bàsiques, Facultat de Medicina, Universitat de Lleida, 25198 Lleida, Spain
Received 4 August 1999/Returned for modification 10 September
1999/Accepted 21 September 1999
 |
ABSTRACT |
Glutaredoxins are members of a superfamily of thiol disulfide
oxidoreductases involved in maintaining the redox state of target proteins. In Saccharomyces cerevisiae, two glutaredoxins
(Grx1 and Grx2) containing a cysteine pair at the active site had been characterized as protecting yeast cells against oxidative damage. In
this work, another subfamily of yeast glutaredoxins (Grx3, Grx4, and
Grx5) that differs from the first in containing a single cysteine
residue at the putative active site is described. This trait is also
characteristic for a number of glutaredoxins from bacteria to humans,
with which the Grx3/4/5 group has extensive homology over two regions.
Mutants lacking Grx5 are partially deficient in growth in rich and
minimal media and also highly sensitive to oxidative damage caused by
menadione and hydrogen peroxide. A significant increase in total
protein carbonyl content is constitutively observed in grx5
cells, and a number of specific proteins, including transketolase,
appear to be highly oxidized in this mutant. The synthetic lethality of
the grx5 and grx2 mutations on one hand and of
grx5 with the grx3 grx4 combination on the other points to a complex functional relationship among yeast glutaredoxins, with Grx5 playing a specially important role in protection against oxidative stress both during ordinary growth conditions and after externally induced damage. Grx5-deficient mutants
are also sensitive to osmotic stress, which indicates a relationship
between the two types of stress in yeast cells.
 |
INTRODUCTION |
Reactive oxygen compounds, such as
hydrogen peroxide, the superoxide anion, and the hydroxyl radical
derived from the latter, exert toxic effects on diverse cellular
molecules, including the oxidation of protein thiol groups
(10). Cells have developed a number of protective mechanisms
against this oxidant effect on proteins, the thiol-disulfide
oxidoreductase activities of thioredoxins and glutaredoxins being among
the more significant of these (9, 17, 18, 34). While
thioredoxin directly reduces protein disulfide groups with NADPH as the
hydrogen donor, the tripeptide thiol glutathione
(L-
-glutamyl-L-cysteinyl-glycine) in its
reduced form (GSH) acts as the hydrogen donor for the reduction of protein disulfides by glutaredoxin (17). It has
been proposed elsewhere that thioredoxin and glutaredoxin systems are
essential for maintaining the adequate redox state of proteins in the
intracellular environment and thus for regulating various cellular
activities (1, 9, 17). However, only ribonucleotide
reductase and 3'-phosphoadenylylsulfate reductase have been firmly
recognized as in vivo targets for both systems (2, 28, 37).
Even in this case, not all Escherichia coli glutaredoxins
seem to participate in protection against oxidation of these substrates
(28, 51). Thus, many of the in vivo targets of thioredoxins
and glutaredoxins are still to be elucidated (1).
Nevertheless, the presence of both thioredoxins and glutaredoxins in
different organisms, together with the conservation of their active
sites through evolution (17, 18), points to their important
role as intracellular protein antioxidants (1).
Two genes encoding glutaredoxins (GRX1 and GRX2)
in Saccharomyces cerevisiae have been characterized
elsewhere (12, 29). Grx2 accounts for most of the
glutaredoxin activity during exponential growth (29). The
GRX1 and GRX2 gene products are highly homologous to rice, pig, and human glutaredoxins, as well as to two E. coli glutaredoxins (18, 29). Cell growth is not
affected in individual and double grx1 grx2 mutants in
either rich or minimal medium. On the other hand, while grx1
mutant cells are particularly sensitive to oxidative stress caused by
menadione (a generator of superoxide anions), the grx2
mutant is hypersensitive to hydrogen peroxide (29),
suggesting separate roles for Grx1 and Grx2 proteins in protection
against several types of oxidative stress. Yeast gluthatione reductase
(encoded by GLR1) regulates levels of GSH in the cells, providing the substrate for glutaredoxin. Thus, it is also necessary for protection against oxidative stress, as shown by the sensitivity phenotype of glr1 mutants to reactive oxygen species
(15, 42). Yeast mutants with mutations in GSH1
(which codes for glutathione synthetase) do not grow unless glutathione
is added to the medium (54), and diethylmaleate-induced
gluthatione depletion causes growth arrest (53). These
observations indicate that GSH is necessary for cell proliferation,
being required for glutaredoxin-mediated reduction of protein disulfide
bonds and/or performing additional essential roles in cell metabolism.
With respect to the thioredoxin system in S. cerevisiae,
neither of the two individual mutants with mutations in the thioredoxin
genes (TRX1 and TRX2) presents any defects in
cell growth. This contrasts with the case of the double trx1
trx2 mutant, which grows poorly even though deoxyribonucleotide levels in the cell remain unaltered (40, 41), thus pointing to additional functions of the thioredoxin system besides the role it
plays in ribonucleotide reductase activity. The fact that the
thioredoxin and glutaredoxin systems display at least partially overlapping functions in maintaining the physiological redox state of
yeast proteins is supported by the observation that glutathione reductase function is absolutely necessary for cell growth in aerobic
conditions in a trx1 trx2 mutant background. This is
probably due to accumulation of toxic levels of oxidized glutathione in glr1 trx1 trx2 mutant cells, while the single
glr1 mutant displays normal vegetative growth
(42).
Besides thioredoxin and glutaredoxin, other cellular activities protect
cells from oxidative damage (19, 38). Some of the
responsible genes are under the control of the Yap1 transcription factor (15, 24, 25, 49). However, protection against
oxidation is also related to other types of stresses. Thus, the
expression of CTT1 (coding for cytosolic catalase) is
induced not only by oxidative damage but also by heat and osmotic
stresses, through the action of the Msn2 and Msn4 zinc-finger
transcription factors on the STRE elements present in the
CTT1 promoter (32, 33, 47). A number of different
mutants which are hypersensitive to oxidative damage also displayed
increased sensitivity to osmotic stress (23). One of the
mutations in these mutants corresponds to the SKN7 gene,
which codes for a response regulator in a two-component regulatory
system that can be activated alternatively by osmotic stress (via the
Sln1 phosphorelay) or by oxidative stress and which regulates the
expression of a number of genes including the TRX2 gene
coding for a thioredoxin (6, 21, 27, 39). Nevertheless, the
molecular basis that explains the relationship between osmotic and
oxidative stress still remains to be characterized.
In the course of the S. cerevisiae genome sequencing
project, a family of three previously unknown open reading frames
(ORFs) with homology to glutaredoxin genes has emerged. In this work, we present data confirming that this family of GRX3,
GRX4, and GRX5 genes code for proteins with
glutaredoxin activity and show evidence for a role of these genes in
the defense against certain types of stress and for a functional
interaction among them and with GRX2. Finally, we emphasize
the importance of Grx5 in such defense functions.
 |
MATERIALS AND METHODS |
Strains and growth conditions.
Yeast strains used in this
work are described in Table 1. CML235
(MATa ura3-52 leu2
1 his3
200) and CML236
(like CML236 but MAT
) were employed as wild-type strains.
E. coli DH5
was used as a host for DNA cloning. Yeast
cells were grown at 30°C in yeast extract-peptone-dextrose (YPD)
medium or, when indicated, in SD minimal medium with adequate
auxotrophic supplements (3) and glucose (at a 2%
concentration) or glycerol (at 3%) as a carbon source.
Gene disruptions and other genetic methods.
Standard methods
(3) were used for plasmid DNA preparation and manipulation
and also for bacterial transformations. Crosses between yeast strains,
sporulation, and tetrad analyses were carried out as described in
reference 20.
To delete
GRX3,
GRX4, or
GRX5 in the
wild-type CML235 and CML236 strains, we made use of the
kanMX4 cassette from pFA6a-kanMX4,
according to the short
flanking homology strategy (
52). A similar
approach was used
for disrupting
GRX2 with
LEU2 as a marker, except
that a pFA6a-kanMX4 derivative (plasmid pCM376, containing the
yeast
LEU2 gene and flanking regions instead of
kanMX4)
was used
for amplification of the disruption cassette. In all cases,
the
DNA cassette was amplified by PCR with Expand High-Fidelity enzyme
(Boehringer), followed by DNA transformation of yeast cells
(
4).
Oligonucleotides for cassette amplification were
designed in such
a way that most of the targeted gene was disrupted
upon transformation
with the amplified DNA. Thus, for the disrupted
GRX2 gene, only
9 bp of the original ORF remains at the 5'
end and 11 bp remains
at the 3' end; for
GRX3, 2 and 19 bp
remain, respectively; and
for
GRX4, 10 and 9 bp remain,
respectively. For
GRX5, the deletion
covers from base +25
(origin at +1) up to the stop codon. Deletions
were confirmed by
PCR.
Sensitivity to stress conditions.
Exponentially growing
cells at about 107 cells per ml were treated with the
respective compound, which was directly added to the growth medium at
the concentrations and during the intervals indicated for each
experiment. Untreated cultures were incubated in parallel over the same
periods. Viability was determined by colony counts on YPD plates (each
dilution three times) after 3 days of incubation at 30°C. Total cell
number was determined from formaldehyde-fixed samples, by using an
Epics XL flow cytometer (Coulter).
Analysis of cell wall-altered phenotype.
Agents used as
indicators for cell wall alterations were tested by spotting 4-µl
samples of 1/8 serial dilutions of cultures exponentially grown in YPD
at 30°C (initial concentration of 107 cells per ml) on
YPD plates containing the respective agent and monitoring growth after
3 days at 30°C. The following compounds and concentration ranges were
employed: calcofluor white, 25 to 75 µg/ml; sodium dodecyl sulfate
(SDS), 0.05 to 0.2%; and caffeine, 5 to 20 mM.
Northern blot analyses.
RNA purification, electrophoresis,
probe labelling with digoxigenin, hybridization, and signal detection
were carried out as previously described (11). Signals were
quantified with the Lumi-Imager equipment (Boehringer) software. Probes
for the GRX3, GRX4, and GRX5 genes
were generated by PCR from genomic DNA, by using oligonucleotides
designed to amplify fragments covering the entire ORF without adjacent sequences.
Preparation of cell extracts and determination of enzyme
activities.
Extracts were prepared from yeast cells exponentially
growing in YPD medium at 30°C by collecting, washing, and finally
resuspending them (at 1:100 of the original volume) in 20 mM imidazole
buffer (pH 7.0) plus 2 mM EDTA and protease inhibitors (2 mM
phenylmethylsulfonyl fluoride, 0.2 mM tolylsulfonyl phenylalanyl
chloromethyl ketone [TPCK], and 2 µM pepstatin, final
concentrations). Cells were broken by repeated vortexing in cold
conditions with an equivalent volume of glass beads (0.6-mm diameter;
Sigma), followed by low-speed centrifugation (4,000 × g for 5 min at 4°C). This supernatant was again centrifuged at
30,000 × g for 40 min at 4°C, and the final
supernatant was kept for further analyses.
Glutaredoxin (GSH disulfide oxidoreductase) activity was measured by
the reduction of the mixed disulfide formed between

-hydroxyethyl
disulfide and glutathione, according to reference
18. Cell extracts
were heated at 85°C for 5 min to
inactivate glutathione reductase,
thioredoxin reductase, and other
interfering activities. Glutathione
reductase activity was determined
as previously described (
14),
following the decrease in
absorbance (340 nm) due to the oxidation
of NADPH. Transketolase
activity was determined as described in
reference
22. The protein concentration was measured by the
Bradford
method.
Quantification of protein carbonyl groups.
The protein
carbonyl content in crude extracts was determined according to the
dinitrophenylhydrazine derivatization method (26).
Quantification was carried out with a Zorbax GF-250 high-pressure liquid chromatography gel filtration column at flow rate of 1 ml/min at
30°C. Absorbance at 276 and 370 nm was monitored with a Waters 996 diode array detector.
Other analytical and preparative protein methods.
Analytical
SDS-polyacrylamide gel electrophoresis and immunodetection of peptides
bound to 2,4-dinitrophenylhydrazones (DNPs) were carried out as
previously described (48). Anti-DNP antibodies (supplied by
DAKO) were employed at a 1:4,000 dilution. Preparative electrophoresis,
peptide mapping (after limited proteolysis with endoproteinase V8 from
Staphylococcus aureus), and sequencing were conducted as
described in reference 50.
Sequence analyses.
FASTA analysis (as provided by the Munich
Information Centre for Protein Sequences [35]) was
initially carried out to compare each pair of protein sequences.
Multiple protein alignments were calculated with the ClustalW package
(16). The Sequence Space algorithm (8) was
applied to regions where significant alignments could be established,
in order to classify sequences into groups according to their
similarity. The original algorithm was implemented in a Mathematica
package, and all computations were performed with this program.
 |
RESULTS |
A new glutaredoxin family in S. cerevisiae.
Analysis of
the yeast genome revealed the existence of a family of three ORFs
(YDR098c, YER174c, and YPL059w) whose products display significant
homology to known glutaredoxins. ORFs YDR098c and YER174c have
N-terminal extensions that are absent in YPL059w (Fig.
1A). In the homologous region, the
predicted protein sequences of all three ORFs display 29% identity,
which increases to 71% when only YDR098c and YER174c are considered.
The highest homology concentrates in two separate regions (Fig. 1A).
The most N-terminal of these regions includes a common cysteine
residue. In contrast with other glutaredoxins from yeasts or other
prokaryotic or eukaryotic organisms (18, 29), a motif of two
cysteine residues separated by two additional amino acids does not
occur in the above three ORF products, although YPL059c contains a
second cysteine in the most C-terminal homology region.

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FIG. 1.
Comparative analysis of glutaredoxin sequences. (A)
Alignment of the S. cerevisiae Grx3, Grx4, and Grx5 amino
acid sequences deduced from the nucleotide sequences of their
respective ORFs. Common residues in the three sequences are shaded. The
N-terminal extensions of Grx3 and Grx4 are not represented. The
asterisk marks the common cysteine residue present in all three
sequences. A second cysteine present in Grx5 is underlined. (B)
Sequence analysis of relevant regions of 23 different glutaredoxin
proteins. Regions N and C are respectively the most N- and C-terminal
regions of the molecules for which significant alignments can be
established. Sequences outside these two regions are not represented.
Subfamilies 1 and 2 are initially defined according to the consensus
sequences indicated in the figure. For the consensus sequences,
residues identical in all members of each subfamily are represented in
uppercase letters, while those common to at least 75% of them are in
lowercase letters. More details about these sequences can be obtained
from reference 36. H. ducreyi,
Haemophilus ducreyi; H. influenzae,
Haemophilus influenzae; L. pneumophila,
Legionella pneumophila; R. prowazekii,
Rickettsia prowazekii; C. elegans,
Caenorhabditis elegans.
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Comparisons were extended to a total of 23 putative glutaredoxin
protein sequences present in the databases (Fig.
1B). This
allowed us
to define two subfamilies of glutaredoxins based on
the sequence
patterns of the two regions of highest homology,
here referred to as
regions N and C. Homology in region C (the
most C-terminal) extends to
all members of the two subfamilies,
with a total of four residues
conserved in all 23 proteins. In
contrast, alignment in region N (the
most N-terminal) was significant
only when applied within each
subfamily. Members of subfamily
1 all contain the motif PXCG/AFS/P (X
being nondefined), with
no other cysteine residue being present in this
region, while
subfamily 2 is defined by the above-mentioned motif
CPY/FC. This
motif partially defines the characterized active site of
some
glutaredoxins (
43,
55), all of which are included in
subfamily
2. No equivalent studies have been reported for subfamily 1 members.
Interestingly, glutaredoxins of both subfamilies coexist in
organisms
ranging from bacteria (i.e.,
E. coli) to higher
eukaryotes (such
as humans) (Fig.
1B). In the case of
S. cerevisiae, the previously
characterized
GRX1- and
GRX2-encoded glutaredoxins (
29) are
ascribed to
subfamily 2, while the products of YDR098c, YER174c,
and YPL059w are
subfamily 1 members. From the homology patterns
and also from the
determination of enzyme activities (see below),
we propose to rename
these last three ORFs
GRX3,
GRX4, and
GRX5,
respectively.
The Sequence Space approach (
8) was used for a more detailed
comparative analysis of the 23 glutaredoxin sequences, separately
for
regions N and C (Fig.
2). When this
method was used to analyze
region C in the whole set of sequences, the
previously defined
subfamily 1 clustered separately from the remaining
sequences.
Inside this cluster, Grx5 appears closer to glutaredoxins
from
multicellular eukaryotes than to yeast Grx3 and Grx4, which are
positioned almost together. The 10 sequences of subfamily 2 were
divided into three clusters corresponding respectively to bacterial
molecules, mammalian molecules, and a cluster of yeast (
S. cerevisiae Grx1 and Grx2 and
Schizosaccharomyces pombe)
and rice glutaredoxins.
This same division in subfamily 2 glutaredoxins
was confirmed
from analysis of region N, with the difference that rice
glutaredoxin
mapped closer to
E. coli glutaredoxins.
Sequence analysis of region
N in subfamily 1 confirmed the relative
distance between Grx5
and Grx3/4. Although these three proteins are all
positioned in
the same cluster, the Grx5 sequence comes closer to
Arabidopsis thaliana or human glutaredoxins than to Grx3 and
Grx4.

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FIG. 2.
Sequence Space analysis of the glutaredoxin family.
Principal component analyses of the protein sequences are shown (from
left to right) on the resulting 1-2, 1-3, and 2-3 discriminant axes
(8). Analyses were carried out separately for region N in
subfamily 1, region N in subfamily 2, and region C in the whole
glutaredoxin family. Each point in the plots represents an individual
sequence identified by a number. Distances between points are
proportional to sequence divergence. Sequence clusters are defined
according to proximity in the resulting plots (continuous lines). These
clusters were tentatively divided into subsets of sequences (dashed
lines) when the results on the three dimensions suggested the existence
of relevant subgroups. See the Fig. 1 legend for genus abbreviations.
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A triple grx3 grx4 grx5 mutant is not viable.
In
order to genetically characterize the new glutaredoxins, null
individual mutants were obtained for each of the GRX3,
GRX4, and GRX5 loci and also double mutants
derived from their respective crosses. Cultures of the grx3
or grx4 mutants displayed the same growth phenotype as the
wild type both in rich and in SD-glucose minimal medium at the
temperature intervals ranging from 15 to 37°C. In contrast, in
grx5 mutant cells growth rate was decreased by a factor of
1.6 compared to wild-type cells in YPD medium at 30°C (Table
2). Moreover, this mutant grew poorly in
SD-glucose medium at 30°C and was unable to grow when the temperature
was increased to 37°C. The grx5 mutation was also linked
to the inability to grow in YP-glycerol medium. Growth characteristics
were even more affected in the grx3 grx5 double mutant
(although not in the grx4 grx5 and grx3 grx4
mutants) with respect to grx5 mutant cells (Table 2).
In order to obtain the multiple mutant disrupted in all three
glutaredoxin genes of subfamily 1, a
grx3 grx4 mutant strain
was crossed with a
grx5 mutant. Fifty tetrads derived from
the
resulting diploid were analyzed, and yet no
grx3 grx4
grx5 multiple
mutant could be isolated, in contrast to the other
possible genotype
combinations. To confirm that the above combination
was not viable,
we employed the
tetO promoter substitution
cassette (
4) to
substitute the chromosomal
GRX5
promoter for the doxycycline-regulatable
tetO promoter in a
grx3 grx4 mutant background. The resulting
strain was able
to grow in the absence of doxycycline but arrested
growth in the
presence of the antibiotic (data not shown), confirming
that
inactivation of the three glutaredoxins was lethal for yeast
cells.
Glutaredoxin-reduced activity causes protein oxidative damage in
grx3, grx4, and grx5 mutants under
ordinary growth conditions.
In order to prove that
GRX3, GRX4, and GRX5 code for proteins
with glutaredoxin activity, we measured enzyme levels in the respective
single mutants (Table 2). In grx2 and grx3
mutants, glutaredoxin activity decreased by 40% with respect to
wild-type cells. It is remarkable that although grx5 mutant
cells showed growth defects not observed in the grx3 or
grx4 mutants, the decrease in glutaredoxin levels in
grx5 mutant cells was only slightly higher than that in the
other two mutants. While in the grx3 grx4 double mutant
there seemed to be a compensatory effect in activity levels relative to
the respective single mutants, glutaredoxin activity in mutants
affected in GRX5 plus one of the other two genes was similar
to that in the single grx5 mutant. Glutathione reductase
activity, measured as a control, maintained equivalent levels in all
the strains tested (Table 2).
It has been proposed that glutaredoxins participate in the maintenance
of an adequate intracellular concentration of thiols,
which play an
antioxidant role in the cell (
9,
34). Therefore,
we tested
whether the previously mentioned deletion mutants have
higher basal
levels of protein oxidative damage than wild-type
cells. For this
purpose, we measured the protein carbonyl content
in crude extracts
from cells grown in YPD medium. This parameter
has been widely used to
assess minimal values of protein damage
under oxidative stress
conditions (
26,
48,
50). As shown
in Table
2, single
grx3 and
grx4 mutants displayed a moderate
increase in carbonyl content with respect to wild-type cells.
This
increase was more severe in the
grx5 mutant. In the case
of
the double mutants, the carbonyl content was slightly increased
in
grx3 grx4 mutant cells and markedly increased in
grx5 mutant
cells that also contained inactivating mutations
in
GRX3 or
GRX4.
The effect of inactivation of
the already-known glutaredoxin
GRX2 gene on protein
oxidative damage was then checked in the same
way (Table
2). In this
case, the decreased levels of glutaredoxin
enzymatic activity in the
grx2 mutant cells were also reflected
in an increase in
protein carbonyl content of about 15% with respect
to wild-type cells.
This was of the same magnitude as that in
the
grx3 and
grx4 mutant cells but clearly less than the values
obtained
for the
grx5 mutant. In the case of the double mutants,
a
50% increase was observed for
grx2 grx3 mutant cells, and
one
of 30% was observed in the case of the
grx2 grx4 mutant.
To test whether the observed increases in protein carbonyl content in
mutant cells affected the whole protein pool or only
some proteins, we
used Western blot analysis to compare the patterns
of oxidized proteins
exhibited by wild-type and mutant strains
(Fig.
3). All the bands observed in wild-type
cells that have
to be considered background levels of protein oxidation
increase
in all mutants. Furthermore, in the mutants lacking
GRX5 at least
one band appeared to be specifically oxidized
(indicated by an
asterisk in Fig.
3). This was not observed in the
other mutant
strains. By using crude extracts from
grx5
mutant cells, this
protein band was purified to homogeneity by
preparative electrophoresis,
and its N terminus was sequenced. The
protein was identified as
transketolase. This was further confirmed by
the N-terminal sequence
of one oxidized peptide obtained after limited
proteolysis of
the whole protein with endoproteinase V8. Further
extending these
results, transketolase activity was measured in
extracts from
wild-type and
grx5 mutant cells. The latter
exhibited only about
25% of the activity present in wild-type cells
(20 versus 83 mU/mg
of protein), confirming that oxidation leads to
enzyme inactivation.

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FIG. 3.
Protein oxidative damage under normal growth conditions
of wild type and grx single and double mutants.
MATa strains were employed. Cultures of wild type
(CML235) and single and double mutants were grown in YPD liquid medium
at 30°C until an optical density at 600 nm of 1 was reached. The
crude extracts obtained were analyzed by Western blotting with anti-DNP
antibodies (B). A parallel run stained with Coomassie brilliant blue is
shown in panel A. Each lane contained 20 µg of total protein.
Asterisks mark the identified transketolase band (see text for
details).
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Grx5 glutaredoxin plays a central role in protection against
induced oxidative and hyperosmotic stresses.
Once it was
demonstrated that the products of GRX3, GRX4, and
GRX5 are required for maintaining normal glutaredoxin levels in the cell, we next studied their role in protection against an
externally induced oxidative stress. The effect of hydrogen peroxide
and menadione (a generator of superoxide radicals) on viability was
tested when they were applied to exponentially growing cells.
Disruption of GRX3 and GRX4 had only a moderate
effect on sensitivity to menadione and no effect on sensitivity to
hydrogen peroxide, while disruption of GRX5 caused a
dramatic increase in sensitivity to both oxidants (Fig.
4A). The grx3 grx5 and
grx4 grx5 double mutants were not markedly more sensitive to
menadione and hydrogen peroxide than were grx5 single
mutants (Fig. 4B). In fact, survival after long-term treatment was
slightly higher in grx3 grx5 mutant cells than in
grx5 mutants, although this may be an effect of the lower
growth rate of the double mutant.

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FIG. 4.
Sensitivity of S. cerevisiae grx mutants to
oxidative agents. MATa strains were employed. (A)
Cultures of wild-type (CML235) and single mutant strains growing
exponentially in YPD liquid medium at 30°C were exposed to the
indicated agents and concentrations, and viable numbers (relative to
time zero values) were determined at different times. (B) As in panel
A, except that lower agent concentrations were used to determine
sensitivity of double mutants compared to wild-type and single mutant
strains. (C) Protein oxidative damage in wild type and glutaredoxin
mutants under stress conditions. Cultures of wild type and single
glutaredoxin mutants were grown in YPD liquid medium at 30°C, and at
an optical density at 600 nm of 1, menadione or hydrogen peroxide was
added to the cultures at the final concentration of 20 or 5 mM,
respectively. After 60 min of treatment, the cultures were harvested by
centrifugation and crude extracts were obtained. Analyses by Western
blotting with anti-DNP antibodies were conducted as described in
Materials and Methods. Each lane contained 10 µg of total protein.
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Protein damage promoted by adding 20 mM menadione or 5 mM hydrogen
peroxide to growing cells was analyzed by Western blotting
(Fig.
4C).
In these conditions, the
grx3 and
grx4 mutants
revealed
only a moderate increase in the level of protein oxidation
with
respect to wild-type cells, while a heavily oxidized protein band
pattern was exhibited by the
grx5 mutant. For comparison, we
included
the already-described
grx2 mutant, which displayed
a protein oxidation
pattern similar to those observed in wild-type
cells and
grx3 and
grx4 mutants. In agreement
with the data presented in Table
2, the overall increase in carbonyl
content in mutant cells was
not due to a qualitative difference of
oxidation in particular
protein bands but to an increase in oxidative
damage in most protein
bands present in all the stressed
strains.
Other authors have shown that some yeast mutants hypersensitive to
oxidants are also more sensitive to osmotic stress (
23).
We
therefore tested the sensitivity of
grx5 mutant cells to
hypertonic
conditions. This mutation increased sensitivity to high
concentrations
of KCl more than 10-fold, and the sensitivity was even
higher
in the double
grx3 grx5 mutant (Fig.
5A). To show that this effect
was not
caused by ion toxicity, we tested the effect of sorbitol
at a
concentration of 2 M or higher on transitory cell division
arrest after
the osmotic shock. In these conditions, growth was
also more affected
in
grx5 mutant cells than in the wild-type
strain (Fig.
5B),
confirming that the Grx5 product protects not
only against oxidative
stress but also against different types
of hyperosmotic stress. On the
other hand, none of the
grx3,
grx4,
or
grx5 single mutants was more sensitive than wild-type cells
to heat shock (shift from 25 to 37°C [data not shown]).

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|
FIG. 5.
Sensitivity of S. cerevisiae grx mutants to
hyperosmotic treatments. (A) Exponentially growing wild-type (CML235)
and mutant (MATa type) cells in YPD medium at 30°C
were supplemented with 2 M KCl, and cell viability (made relative to
parallel untreated cultures) was determined at the indicated times. (B)
Exponentially growing cells in YPD medium were treated with sorbitol at
the final concentrations indicated, and incubation was continued under
these conditions. Total cell numbers were measured at subsequent
periods. Bars represent the lag periods after sorbitol addition during
which cell division remained arrested before cultures resumed growth.
|
|
The hypersensitivity of
grx5 mutant cells to osmotic stress
could have been caused by the effect of reactive oxygen species
on cell
wall architecture. To analyze this possibility, we tested
the
sensitivity of wild-type and
grx5 mutant cells to a number
of especially toxic agents for cells altered in cell wall structure
(
31).
grx5 mutant cells did not show increased
sensitivity (relative
to wild-type cells) to calcofluor white, SDS, or
caffeine (data
not shown), thus eliminating the possibility of
explaining increased
osmotic sensitivity as being a direct consequence
of hyperoxidation
of cell wall
molecules.
Grx2 and Grx5 functions can substitute for each other.
Grx2
has been reported to account for most of the glutathione-dependent
oxidoreductase activity of glutaredoxins in yeast cells and to play an
important role in protection against hydrogen peroxide, but not against
menadione (29). It was possible to obtain grx2
grx3 and grx2 grx4 mutant strains by standard genetic crosses from their respective single mutants, and they had
significantly reduced oxidoreductase activity compared with single
grx3 or grx4 mutants (see above and Table 2).
However, no double grx2 grx5 mutant could be obtained from a
total of 40 tetrads analyzed. We conclude that this mutant combination
is lethal and therefore that Grx2 activity can functionally substitute,
at least in these particular conditions, for the loss of activity in
grx5 mutant cells. Loss of GRX2 caused a
less-than-threefold increase in sensitivity to hydrogen peroxide stress
in cells grown in SD-glucose medium, and this was of the same order as
that in the double grx2 grx3 and grx2 grx4
mutants (Fig. 6). Differences in
sensitivity between wild-type and grx2 mutant cells were
even smaller in cultures grown in YPD medium (data not shown).

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|
FIG. 6.
Effect of oxidative stress (5 mM hydrogen peroxide for
1 h) on cell viability of grx mutants
(MATa strains) compared to that of wild-type cells
(strain CML235). Cells were grown exponentially at 30°C in SD medium
plus glucose, and after treatments, they were plated on YPD solid
medium in order to determine viability. Bars indicate the percentages
of viable cells relative to those in parallel untreated cultures.
|
|
A triple
grx2 grx3 grx4 mutant was subsequently obtained by
standard genetic crosses. Loss of the three genes caused about
the same
effect on cell growth rate in rich medium as the loss
of the single
GRX5 gene (Table
2), although the multiple mutant
grew more
efficiently in minimal medium than did the
grx5 mutant
(data
not shown). Simultaneous disruption of
GRX2,
GRX3, and
GRX4 caused a 50% reduction in total
cellular glutaredoxin activity
compared to the single
grx2
mutant or the double
grx2 grx3 and
grx2 grx4
mutants. Correspondingly, total protein carbonylation
was higher in the
triple
grx2 grx3 grx4 mutant than in the other
single and
double mutants (Table
2), and sensitivity to hydrogen
peroxide was
higher in
grx2 grx3 grx4 mutant cells than in the
single
grx2 mutant and of the same order as that in the
grx5 mutant
(Fig.
6). We can conclude that although Grx2 and
Grx5 can functionally
substitute for each other, loss of Grx5 has more
severe effects
on cell physiology than loss of Grx2 alone and that in
order to
observe effects comparable to those of the loss of Grx5, it is
necessary to simultaneously eliminate Grx2, Grx3, and
Grx4.
Expression of the GRX3-GRX4-GRX5 gene family in
response to stresses.
The transcriptional pattern of
GRX3, GRX4, and GRX5 was measured
under several conditions (Fig. 7).
Maximum expression for the three genes occurred during the exponential
growth phase. As cells traversed the diauxic shift, transcript levels
progressively decreased to under detectable levels in stationary phase.
However, the rate of mRNA disappearance was different for each of the
three genes. GRX3 mRNA rapidly became undetectable, while
GRX4 expression was still detectable until the postdiauxic
stage (Fig. 7). The expression of the three genes was not inducible
under any of the three stresses applied (osmotic, oxidative with
hydrogen peroxide or menadione, and heat). In fact, all three types of
stress caused a reduction in the respective mRNA levels. This was
moderate for GRX5 and more intense for the other two
transcripts. We can therefore conclude that the role of the Grx5
glutaredoxin in protection against oxidative and osmotic stresses does
not depend on transcriptional changes induced by the respective type of
stress.

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|
FIG. 7.
Northern blot analyses of GRX3,
GRX4, and GRX5 expression. Samples were taken at
different stages of the population growth curve in YPD liquid medium at
30°C (A) or after treatment of mid-exponential-phase cells (at 30°C
except for heat shock) with KCl (0.5 M), hydrogen peroxide (0.4 mM),
menadione (2 mM), or heat shock for the indicated times (B). Small
nuclear U2 mRNA is shown as the loading control. Numbers under the
lanes indicate the mRNA levels for each time point, relative to the
mid-exponential-phase sample. For heat shock analysis, the time zero
sample corresponds to exponential cultures at 25°C.
|
|
 |
DISCUSSION |
Glutaredoxins are important for maintaining the reducing status of
thiol groups in proteins (1, 9, 45). Together with thioredoxins, they are members of a superfamily of proteins that exert
their activity through a disulfide exchange reaction involving one or
two cysteine residues at the active site. The initially characterized
members of the glutaredoxin family contained a CXXC active site, with
XX being PY in most cases. Studies of phage T4 (43), pig
(55), and E. coli (44) glutaredoxins
have shown that of the two cysteine residues, only the most N-terminal
is absolutely essential for enzyme activity, while mutants with
mutations in the more C-terminal cysteine retain part of their GSH
oxidoreductase activity (7, 43, 44, 55).
Glutaredoxin-mediated protein glutathionylation has been explained in
terms of the participation of a single cysteine (43).
Studies involving an E. coli glutaredoxin mutated at the
second cysteine residue indicate that both cysteine residues are
required for reduction of protein disulfides (such as that in
ribonucleotide reductase) through a dithiol mechanism, while the
deglutathionylation of protein substrates would employ a monothiol
mechanism (7) that could play an important physiological role at the endoplasmic reticulum for the maintenance of native protein
conformation (30). Here we define a group of three new glutaredoxins (Grx3 to Grx5) in S. cerevisiae that
structurally differ from the subfamily containing the CXXC motif at the
active site and that constitute a separate subfamily including members ranging from bacterial to human glutaredoxins. Members of the latter
subfamily contain the motif CG/AFS/P. The fact that this is the only
conserved cysteine residue present in the members of this subfamily
suggests that it may be part of the active site of the enzyme. Most
members of this new subfamily also contain one or two basic amino acid
residues separated by a few positions from the cysteine residue toward
the C end. The presence of one or two basic residues close to the
active site is also characteristic of the first subfamily, and it has
been suggested that it might be needed for the thioltransferase
reaction due to the enhancement of the S nucleophilicity of the
reactive cysteine (55). This analogy reinforces the role of
the CG/AFS/P motif in the reactivity of the glutaredoxins of the new subfamily.
The Grx3, Grx4, and Grx5 yeast glutaredoxins display sequence
differences, though all three are members of the single-cysteine subfamily. Grx5 lacks part of an N-terminal domain present in Grx3 and
Grx4. Application of the Sequence Space method (which allows sequence
clustering based on amino acid conservation) has shown the Grx5
sequence to be closer to plant or mammalian glutaredoxin sequences than
to Grx3 or Grx4. This method also permits us to observe that Grx1 and
Grx2 yeast glutaredoxins are structurally separated from the Grx3/4/5
group. In the C-terminal region of homology, Grx5 contains the IGGC
motif, which is absent in the other four yeast glutaredoxins but is
present in the mammalian members of the cysteine-pair subfamily. The
glycine pair in the above motif is common to all glutaredoxins of both
subfamilies and might contribute to bringing an aspartic acid residue
close to the active site cleft. The role of this conserved aspartic acid has been shown to be essential in the case of pig glutaredoxin (43).
Cell growth rate is not affected by single mutations in GRX1
to GRX4 (reference 29 and this work). In
contrast, grx5 mutant cells are constitutively affected in
growth pattern (lower growth rate in rich medium, poor growth in
minimal medium, and no growth in glycerol medium). Simultaneously, the
grx5 mutant has a higher basal protein carbonyl content than
the other single glutaredoxin mutants. Since carbonyl content is
employed as a measure of oxidative protein damage, the above
observations could be interpreted as indicating that the Grx5
glutaredoxin has an important role in protection against oxidative
damage of proteins during exponential growth. This could be correlated
with the role of glutaredoxins in the homeostatic maintenance of
intracellular thiols, which are necessary for several antioxidant
activities in the cell (9, 34). In E. coli,
protein oxidative damage is higher during respiratory growth conditions
(50), and this also appears to be the case in S. cerevisiae (46), which would explain the inability of grx5 cells to grow on glycerol when it is the only carbon
source. The correlation cannot be extended, however, to all situations involving respiratory metabolism. Thus, during the postdiauxic growth
stage, GRX5 expression decreases and the viability of the grx5 mutant is not affected. In this situation, yeast cells
perhaps employ alternative protection strategies against oxidative damage.
When cells are oxidatively stressed with menadione or hydrogen
peroxide, the accumulation of protein damage is much higher in
grx5 mutant cells than in wild type or in the other
grx mutant strains. This again correlates with the extreme
effect of these situations on grx5 mutant viability.
Therefore, in those conditions in which an external oxidative stress is
applied, there is a close relationship between the extent of protein
carbonylation and the effect on cell growth, and these data confirm
that Grx5 may be the most important glutaredoxin in protecting
exponentially growing yeast cells against oxidative protein damage not
only under normal growth conditions but also during induced stress. In
carrying out this antioxidant function, Grx5 does not discriminate
between the effects caused by menadione and those caused by hydrogen
peroxide, in contrast with the protective role that Grx2 performs
exclusively against hydrogen peroxide (29).
This relationship between protein carbonylation levels and growth
defects has one exception. Simultaneous lack of Grx2, Grx3, and Grx4
has a more profound effect on constitutive protein oxidation than on
cell growth. Also, the relationship cannot be strictly extrapolated to
explain the relative contribution of each glutaredoxin species to
overall cellular glutaredoxin activity. Total GSH oxidoreductase activity due to Grx5 alone seems to be similar to that of Grx3 or Grx4
but less than that of Grx2. However, the rate of growth is affected
much more in grx5 mutant cells. These differential effects
of the grx mutations on growth could be explained by the fact that specific yeast glutaredoxins could identify individual protein substrates instead of acting as general GSH oxidoreductases. While inactivation of each GRX3, GRX4, or
GRX5 gene causes a general increase in oxidation levels of
cell proteins, in the case of grx5 mutant cells some
individual protein bands (detected by Western blot immunoassay) are
more prominently oxidized. Among these, transketolase, which is not
detectable as an oxidized species in wild-type cells, appears to be
particularly oxidized only in strains carrying the grx5
mutation, even in a nonstressed situation. The finding that
transketolase is especially susceptible to oxidative stress in yeast
cells is relevant considering that it has been shown recently that
E. coli transketolase activity is negatively affected in
superoxide dismutase-deficient mutants, as well as in hyperoxia
conditions (5). The presence of carbonyl groups in
transketolase and the inactivation of the enzyme could both be a
consequence of the highly oxidized environment created inside grx5 mutant cells. Subsequently, since transketolase is
involved in the pentose phosphate pathway, inactivation of this enzyme might lead to a depletion of NADPH levels, which would account for the
lowered antioxidant capacity. Furthermore, this situation would block
the possibility of redirecting carbohydrate metabolism to the
regeneration of NADPH at the expense of glycolysis, which is what
happens in wild-type cells a few minutes after hydrogen peroxide
exposure (13). Under such circumstances, cell viability would obviously be compromised. Through depletion of
erythrose-4-phosphate (which requires transketolase for its synthesis),
superoxide dismutase deficiency causes auxotrophy for aromatic amino
acids in E. coli (5). We tested whether the
growth deficiency in grx5 mutant cells in minimal medium was
relieved by the addition of aromatic amino acids, but this was not the
case (data not shown). Thus, although transketolase inactivation may
contribute to growth deficiency in this particular situation,
inactivation of other as-yet-uncharacterized proteins must be essential
for the phenotype of Grx5-deficient cells.
Mutations in GRX5 add to the list of oxidation-sensitive
mutants which are also hypersensitive to osmotic stress
(23). From our studies, the idea of a direct oxidative
effect on cell wall architecture in grx5 mutant cells should
be discarded. Signal transduction pathways responding to hyperoxidative
and hyperosmotic signals are interconnected in yeast. The pathway
interrelationship is exemplified by Skn7, which is a signal transducer
whose activity can be regulated by osmotic and oxidative stresses
(6, 21, 27, 39). For the moment, no evidence to suggest that
GRX5 is a target for the pathways regulated by oxidative or
osmotic signals exists, as the expression of GRX5 is not
induced by these stresses. Alternatively, the susceptibility of shared
components of both types of pathways to the protein-hyperoxidation
situation created in Grx5-deficient cells would result in sensitivity
to oxidative and osmotic stresses.
The growth and stress sensitivity phenotypes of grx double
mutants, together with the lethality of the grx2 grx5 and
grx3 grx4 grx5 mutations, point to a central role of Grx5 in
the regulation of the basal redox state of a number of functionally
important proteins during exponential growth. Although we have not
considered Grx1 glutaredoxin, as it has been shown to play only a minor
role in exponential conditions (29), we have observed that a
multiple grx1 grx2 grx3 grx4 mutant is viable (our
unpublished observations). These results could be explained by the
existence of two different protein populations whose redox status could
be separately regulated by the Grx1/2 and the Grx3/4 groups,
respectively, while Grx5 would be able to act on both groups of protein
substrates. Alternatively, the dithiol Grx1 and Grx2 enzymes and the
monothiol Grx3, Grx4, and Grx5 enzymes could perform different thiol
oxidoreductase activities, the first group reducing protein disulfides
through a dithiol mechanism and the second group deglutathionylating
glutathione-modified proteins through a monothiol mechanism (7,
30). Yeast cells would be unable to survive in the absence of the
monothiol mechanism, but they would still be viable in the absence of
the GSH-related dithiol one. In any case, Grx5 alone would be
sufficient for maintaining the protein redox state, as it is able to
replace the function of other glutaredoxins, at least when these are
absent. This would also apply for an externally induced oxidative
stress. In summary, Grx5 would act as a housekeeper for the adequate
protein redox state during normal growth and as the agent responsible
for the elimination of externally induced oxidative damage.
Understanding the role of Grx5 and the other glutaredoxins will give us
a better knowledge of how yeast cells protect themselves against
constitutive and induced protein oxidative damage.
 |
ACKNOWLEDGMENTS |
We thank Lidia Piedrafita for excellent technical assistance,
María Angeles de la Torre and Eloi Garí for comments on
the manuscript, and Silvia Atrian for suggestions on the Sequence Space method.
This work was supported by the European Union (contract
BIO4-CT97-2294), the Spanish Ministry of Education and Culture (project PB97-1456), and the Generalitat de Catalunya (projects SGR97/00087 to
E.H. and SGR98-00012 to J.R.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Departament de
Ciències Mèdiques Bàsiques, Facultat de Medicina,
Universitat de Lleida, Rovira Roure 44, 25198 Lleida, Spain. Phone:
34-973-702409. Fax: 34-973-702426. E-mail:
enric.herrero{at}cmb.udl.es.
 |
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Copyright © 1999, American Society for Microbiology. All rights reserved.
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