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Molecular and Cellular Biology, February 1999, p. 989-1001, Vol. 19, No. 2
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Amino Acid Signaling in Saccharomyces
cerevisiae: a Permease-Like Sensor of External Amino Acids
and F-Box Protein Grr1p Are Required for Transcriptional Induction of
the AGP1 Gene, Which Encodes a Broad-Specificity Amino
Acid Permease
Ismaïl
Iraqui,1
Stephan
Vissers,1
Florent
Bernard,1
Johan-Owen
de
Craene,1
Eckhard
Boles,2
Antonio
Urrestarazu,1 and
Bruno
André1,*
Laboratoire de Physiologie Cellulaire et de
Génétique des Levures, Université Libre de Bruxelles,
B-1050 Brussels, Belgium,1 and
Institut
fuer Mikrobiologie, Universitaet Duesseldorf, D-40225 Duesseldorf,
Germany2
Received 14 July 1998/Returned for modification 19 August
1998/Accepted 22 October 1998
 |
ABSTRACT |
The SSY1 gene of Saccharomyces cerevisiae
encodes a member of a large family of amino acid permeases. Compared to
the 17 other proteins of this family, however, Ssy1p displays unusual
structural features reminiscent of those distinguishing the Snf3p and
Rgt2p glucose sensors from the other proteins of the sugar transporter family. We show here that SSY1 is required for
transcriptional induction, in response to multiple amino acids, of the
AGP1 gene encoding a low-affinity, broad-specificity amino
acid permease. Total noninduction of the AGP1 gene in the
ssy1
mutant is not due to impaired incorporation of
inducing amino acids. Conversely, AGP1 is strongly induced
by tryptophan in a mutant strain largely deficient in tryptophan
uptake, but it remains unexpressed in a mutant that accumulates high
levels of tryptophan endogenously. Induction of AGP1
requires Uga35p(Dal81p/DurLp), a transcription factor of the
Cys6-Zn2 family previously shown to participate in several nitrogen induction pathways. Induction of AGP1
by amino acids also requires Grr1p, the F-box protein of the
SCFGrr1 ubiquitin-protein ligase complex also required for
transduction of the glucose signal generated by the Snf3p and Rgt2p
glucose sensors. Systematic analysis of amino acid permease genes
showed that Ssy1p is involved in transcriptional induction of at least five genes in addition to AGP1. Our results show that the
amino acid permease homologue Ssy1p is a sensor of external amino
acids, coupling availability of amino acids to transcriptional events. The essential role of Grr1p in this amino acid signaling pathway lends
further support to the hypothesis that this protein participates in
integrating nutrient availability with the cell cycle.
 |
INTRODUCTION |
Yeast cells can selectively use the
wide variety of nitrogenous compounds that they find in their rich
natural environment. Some of these molecules can be directly used as
ready-made metabolites. Many of them can also be catabolized to sustain
the synthesis of glutamate and glutamine, the predominant nitrogen
donors in biosynthetic reactions (20, 87). The synthesis of
many enzymes and permeases involved in nitrogen metabolism and the
activity of some of these proteins are tightly regulated according to
the nitrogen source(s) available in the medium (20, 35, 45, 59,
87). It is generally assumed that these regulations are triggered
solely by variations in the intracellular concentrations of specific
metabolites. For instance, many enzymes involved in nitrogen anabolism
are inhibited and/or their synthesis is repressed upon accumulation of
the end or intermediate products of biosynthetic pathways (35,
45). Similarly, expression of most genes encoding amino acid
biosynthetic enzymes is stimulated severalfold in response to
starvation for any one of several amino acids (35, 45). Nitrogen repression (NR) is yet another example of regulation apparently triggered upon variation of the concentration of
intracellular effectors (59). For instance, repression in
the presence of NH4+ of at least some
NR-sensitive genes is relieved in cells partially starved for glutamine
due to a thermosensitive mutation in the glutamine synthetase
GLN1 gene (25, 87).
Whether yeast cells also possess regulatory systems responding
specifically to the extracellular concentration of nitrogenous compounds has been studied very little to date. It seems reasonable, however, to speculate that such nitrogen sensors exist. For instance, two sensors of external glucose concentration (Snf3p and Rgt2p) have
recently been discovered in yeast cells (67). These proteins are members of the sugar transporter superfamily (14, 15) and play a central role in the transcriptional regulation of the HXT genes encoding glucose transporters (55, 66,
67). Although Snf3p and Rgt2p show significant sequence
similarity with hexose transporters, they seem unable to mediate
glucose transport, or if they do, this activity is not sufficient to
confer a measurable glucose uptake activity or to restore the ability
to use glucose in a mutant lacking the six main glucose transporters
(Hxt1, -2, -3, -4, -6, and -7) (55, 66, 73). Two other
proteins of the sugar transport family, namely, the Rco3 regulator of
conidiation in Neurospora crassa (58) and the
Mst1 protein from the ectomycorrhiza Amita muscaria
(64), may also serve as glucose sensors. Similarly, the
uhpC gene of Escherichia coli encodes a protein
highly similar in sequence to UhpT, a permease for several
organophosphate compounds including glucose-6-phosphate
(47). The UhpC protein seems unable to mediate uptake of
glucose-6-phosphate and is involved, rather, in transcriptional
induction of the uhpT permease gene in response to
micromolar levels of external glucose-6-phosphate (48). Some cell surface proteins that effectively mediate transmembrane solute transport also seem to have a regulatory function. For instance, it was
recently shown that Mep2p, a high-affinity NH4+
transporter (61), is essential to diploid-cell
differentiation into a filamentous, pseudohyphal growth when the sole
nitrogen source is NH4+ at a low concentration.
This suggests that this transporter also acts as a sensor of low levels
of extracellular NH4+ (56). These
studies raise the possibility that yet other transporters or
transporter homologs act as sensors of external compounds in addition
to (or instead of) mediating their uptake across the plasma membrane.
In fact, transmembrane solute transporters, by their location,
diversity, and ability to recognize a wide variety of exogenous
compounds with different specificities and affinities, seem ideally
"qualified" to serve as sensors of external nutrients.
It was recently reported that the amino acid permease homologue encoded
by the YDR160w/SSY1 gene is required for transcriptional induction by leucine of the amino acid permease genes, BAP2,
TAT1, and BAP3, and of the peptide transporter,
PTR2. Induction of BAP2 by L- or
D-leucine also occurs in a strain largely deficient in L- and D-leucine transport, suggesting that
Ssy1p mediates transcriptional induction of permease genes in response
to external leucine (24). We report here the results of an
independent approach indicating that this amino acid permease homologue
acts as a sensor of multiple external amino acids. This sensor is
required for transcriptional induction of at least six amino acid
permease genes. We show that one of these genes, AGP1,
encodes a wide-specificity amino acid permease induced by all amino
acids except proline. Together with the general amino acid permease
(Gap1p), this permease plays a major role in amino acid utilization. We
show that induction of AGP1 occurs in response to
extracellular rather than intracellular amino acids. This induction
requires the Cys6-Zn2 transcription factor
encoded by the UGA35(DAL81/DURL) gene. It also
requires the F-box protein Grr1p involved in cell cycle regulation and in Snf3p- and Rgt2p-mediated glucose sensing.
 |
MATERIALS AND METHODS |
Strains, growth conditions, and methods.
The
Saccharomyces cerevisiae strains used in this study are all
isogenic with the wild-type
1278b (12) except for the
mutations mentioned (Table 1). Cells were
grown in a minimal buffered (pH 6.1) medium with 3% glucose as the
carbon source (41). To this medium, urea (5 mM), proline (5 mM), (NH4)2SO4 (10 mM), amino acids
(1 to 10 mM), or combinations of these compounds were added as a
source(s) of nitrogen. Assays for resistance to toxic amino acid
analogues were carried out on plates with
(NH4)2SO4 (10 mM) as the sole
nitrogen source. Analogue concentrations were as follows: 20 µg/ml,
-(2-thienyl)-DL-alanine; 20 µg/ml,
p-fluoro-DL-phenylalanine; 20 µg/ml,
D,L-ethionine; 500 µg/ml,
6-fluoro-tryptophan; and 1 mg/ml, hydroxy-tryptophan. All procedures
for manipulating DNA were standard ones (6, 74). The
E. coli strain used was JM109.
Construction of ssy1
, agp1
,
gap1
, and grr1
deletion strains.
The
ssy1
, agp1
, grr1
, and
gap1
null mutations were constructed by the PCR-based
gene deletion method (86). The DNA segments used to
introduce these mutations were generated by using the kanMX2
gene from plasmid pFA6a-kanMX2 as a template and the following PCR
primers: ssy1
:kanMX2,
5'-CTCTAGGGGAAAAAAGGAAACAGGCGTGTGATAAGAGGCCGCGGCCGCCAGCTGAAGCTTCGTACGC-3' and
5'-CAGTTACCCGCACAATCTAGTGCGTAAAGCAGTGTCAATAGCGGCCGCATAGGCCACTAGTGGATCTG-3'; agp1
:kanMX2,
5'-CCAGAAGGCAACGACCCTTTTCCAATAAGGTCCGTTCCGCGGCCGC GCATAGGCCACTAGTGGATCTG-3' and
5'-TCGTCGTCGAAGTCTCTATACGAACTGAAAGACTTGGCGGCCGCCAGCTGAAGCTTCGTACGA-3'; gap1
:kanMX2,
5'-CTATCAGGCAGCCTCACTAATCTACCCATTGACCTCATGCGCGGCCGCCAGCTGAAGCTTCGTACGC-3' and
5'-GAAGCTCACACAGAT TAG T T T TCATCTCGCT G TC TACTAAGCGGCCGCATAGGCCACTAGTGGATCTG-3'; and grr1
:kanMX2,
5'-ATGGATCAGGATAACAACAACCACAATGACAGCAATAGGCTGCACCCATTCGTACGCTGCAGGTCGAC-3' and
5'-GGGCGTTCCTGATGCTTCATCCATTTGAGAATCAATGGCAGTGTCAGGCGCATAGGCCACTAGTGGATCTG-3'. The yeast strain 23344c was transformed with the PCR
fragments by the lithium method (39) as described previously
(30). Transformants were selected on complete medium
containing 200 µg of G418 (Geneticin; Gibco BRL) per ml.
Plasmids.
The YCpARO9-lacZ plasmid has been
described (36). The YCpAGP1-lacZ plasmid was
constructed by inserting into the BamHI- and
HindIII-cleaved YCpAJ152 plasmid (4) a 996-bp
DNA fragment flanked by HindIII and BamHI
restriction sites and spanning the five first codons of AGP1
plus 979 bp of upstream sequences. This DNA fragment was obtained by
PCR with, as a template, plasmid p16.2 bearing the AGP1 gene
cloned from strain
1278b (36a) and the following PCR
primers: 5'-CCGAAGCTTCCTCAACCTACCATGGCAAAC-3' and
5'-CGCGGATCCGACTTCGACGACGACATTGT-3'. The accuracy of the
PCR-amplified fragment was checked by sequencing.
Enzyme and permease assays.
All permease and enzyme assays
were performed on cells that reached the state of balanced growth.
Incorporation of 14C-labeled amino acids (Amersham) was
measured as previously described (33).
-Galactosidase
activities were measured as described earlier (4) and are
expressed in nanomoles of o-nitrophenol formed per minute
per milligram of protein. Protein concentrations were measured with the
Folin reagent (57) and, as the standard, bovine serum albumin.
Measurements of intracellular tryptophan concentration.
Cells having reached the state of balanced growth were collected by
filtration (Millipore 0.45-µm-pore-size filters) and washed four
times with ice water. Cells were immediately resuspended in 5 ml of 5%
trichloroacetic acid and incubated at 0°C for 10 min with several
inversions of the tubes. The extracts were harvested after filtration
(Millipore 0.45-µm-pore-size filters) and stored at
20°C.
Tryptophan concentrations were determined by high-pressure liquid
chromatography with electrochemical detection as previously described
(29).
RNA analysis by RT-PCR.
Total yeast cell RNA was prepared by
using the RNeasy Mini-Kit (Qiagen) as recommended by the manufacturer.
RNA preparations were treated with DNase (Boehringer) for 1 h at
37°C and washed with RNeasy mini spin columns as described by the
manufacturer (Qiagen). A PCR test was performed on each RNA preparation
to make sure it was DNA-free. Reverse transcriptase (RT)-PCRs were performed by using the Titan One Tube RT-PCR Kit (Boehringer Mannheim) and a Tecne (Cambridge) thermocycler. The samples were first incubated at 55°C for 30 min (for reverse transcription) and then as follows for thermocycling: 94°C for 2 min (1 time); then 94°C for 30 s, 52°C for 30 s, and 68°C for 75 s, plus 5 s for
each cycle starting at cycle 11 (25 times); and then 68°C for 7 min
(1 time). The PCR primers were chosen so that they had similar melting
temperatures and generated PCR fragments of similar sizes. Their
sequences were as follows: ACT1,
5'-GACTCCTACGTTGGTGATGA-3' and
5'-CTGGAGGAGCAATGATCTTG-3'; GAP1,
5'-ATCGGTACTGGTCTGCTGGT-3' and
5'-TCTACGGATTCACTGGCAGC-3'; AGP1,
5'-TCTTACGTCGGCTATCTCAC-3' and
5'-GATGCAACAGCAATGACATA-3'; GNP1,
5'-TGGTCACTGCATCCATGACT-3' and
5'-GAGGCACAGAATGCAATGAC-3'; BAP2,
5'-TCGAGACGTACTTCATGATC-3' and
5'-TCAGTCTTGGACCAGCATAC-3'; TAT1,
5'-GTCACTTAGTCATGATCAGT-3' and
5'-ATGTGATGCAACAGCAATGA-3'; TAT2,
5'-ACCGTACAGTACTGGAACTC-3' and
5'-CTGATATGTGACAGGTTGAT-3'; BAP3,
5'-ATCGGTTACGTTATGGTGTC-3' and
5'-GCTGCCAAGACATATGGTGA-3'; YNL270c,
5'-GACAGAAGCAGTGCCTCTAG-3' and
5'-CACCTCTGGTCACGTTAGAC-3'; YBR132c,
5'-CATTACTGTGTCTACAGCGG-3' and
5'-AGTGTAAGCGTTACCAGCAG-3'; YPL274c,
5'-TGTCAGTAGGTTCATAGATG-3' and
5'-GTCCATGTAGGAACATACCG-3'; YLL061w,
5'-TATCAAGATGACCGCATTCA-3' and
5'-ATCACTAGCGTCCGGACCTG-3'; YFL055w,
5'-ATAGCGATGCACTGCCTGCA-3' and
5'-TGCAGCTCCAACGCTCACAT-3'; MUP1,
5'-TCTGAATGTCAAGATTGGTC-3' and
5'-GTAAGGAGCAATAATCAGGT-3'; and MUP3,
5'-ATAACCATCCATCGATACCA-3' and
5'-CACGGATGATTCGTGGTCCA-3'.
 |
RESULTS |
Ydr160p, an amino acid permease homologue, displays unusual
structural features.
Complete sequencing of the yeast genome has
led to the discovery of many new genes encoding putative transmembrane
solute transporters (3). The largest class of yeast
transport proteins is the sugar transporter family, which includes 7 functionally characterized hexose transporters (Hxt1, -2, -3, -4, -6, and -7 and Gal2), 10 homologous proteins of still unknown function, and 17 more distantly related proteins, some of which have been
functionally characterized (15, 53). It is now accepted that
two proteins of this family, Snf3p and Rgt2p, ensure a regulatory
rather than a catabolic function, i.e., they act as sensors of external
glucose concentration (55, 67). These two proteins display
features that clearly distinguish them from the Hxt transporters: they are expressed to much lower levels and their C-terminal cytosolic tail
is much longer (14, 19, 67). These properties are obvious when the codon bias index (CBI [13]) values of the
genes coding for Snf3p, Rgt2p, and the Hxt proteins are plotted against
the amino acid chain lengths of these proteins (Fig.
1). We have applied the same plot
representation to all other families of yeast transport proteins
extracted by computational analysis (3). Analysis of the
output data concerning the 18 proteins of the amino acid permease
family revealed that one member of this family, namely, the
YDR160w gene product (42), stands out from the
others because of its unusually low CBI (0.013) and much larger size
(852 amino acids) (Fig. 1). Like the other proteins of this family,
Ydr160p consists of a central hydrophobic core of 12 predicted
transmembrane (TM) domains flanked by N-terminal and C-terminal
hydrophilic regions. The hydrophilic N terminus of Ydr160p (281 residues), however, is unusually large compared to those of the other
members of the amino acid permease family (Fig.
2). Furthermore, several regions
connecting TM domains and predicted to be extracellular are larger in
Ydr160p than in classical amino acid permeases (Fig. 2). Finally,
Ydr160p is more distantly related in sequence to the other members of
the amino acid permease family (Fig. 2). The unusual structural
features of Ydr160p are reminiscent of those distinguishing the Snf3p
and Rgt2p glucose sensors from the other proteins of the sugar
transporter family (14, 19, 67). On the basis of these
criteria, we hypothesized that Ydr160p might perform a function
different from that of classical amino acid permeases. For instance,
just as Snf3p and Rgt2p play a determining role in regulating glucose
transport, Ydr160p might be involved in regulating amino acid
transport.

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FIG. 1.
The yeast Ydr160p protein of the amino acid permease
family displays unusual features resembling those of the Snf3p and
Rgt2p glucose sensors. The CBI values (13) of the genes
coding for the 17 Hxt proteins of the hexose transporter family, the
glucose sensors Snf3p and Rgt2p (left panel), and the 18 proteins of
the amino acid permease family (right panel) are plotted against the
number of amino acid residues present in the proteins.
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FIG. 2.
The Ydr160-Ssy1p protein displays unusual structural
features compared to other members of the amino acid permease family.
The amino acid sequences of the amino acid permeases Gap1p
(43), Hip1p (79), Agp1p-Wap1p (65),
and Ydr160p-Sys1p (42) were aligned by using the PILEUP
program (23). Identical and conserved residues are indicated
in black boxes. The transmembrane segments predicted by using the TMAP
algorithm (72) are underlined.
|
|
Ydr160p-Ssy1p is required for induction of amino acid
permeases.
As a first step in the functional analysis of the
YDR160w gene, we isolated a yeast strain with a complete
deletion of the corresponding coding region (see Materials and
Methods). The deletion mutant was viable on both rich and minimal
glucose medium. The ydr160
mutant displayed no clear
growth defect on any of the amino acids that can be used as the sole
nitrogen source (data not shown). We then compared the sensitivities of
the wild-type and ydr160
strains to several toxic amino
acid analogues. These experiments showed that lack of the
YDR160w gene confers resistance to the phenylalanine
analogues
-(2-thienyl)-DL-alanine and
p-fluoro-DL-phenylalanine, to the methionine
analogue D,L-ethionine, and to the tryptophan analogues 6-fluoro-tryptophan and hydroxy-tryptophan (data not shown).
Resistance to several toxic amino acid analogues is a property shared
by apf mutants deficient in the uptake of multiple amino
acids (32). The YDR160w gene proved to be
nonallelic with six previously isolated apf complementation
groups and was initially called APF7 for amino acid
permeability factor 7. In the course of preparation of this study, it
was reported that the SSY1 gene originally identified on a
genetic basis (46) is identical to YDR160w
(24). Hence, the SSY1 nomenclature will hereafter
be adopted.
The activity of the general amino acid permease (Gap1p) was unaffected
in the
ssy1
mutant growing on urea or proline as the
sole
nitrogen source, i.e., under conditions where Gap1p is normally
most active (not shown). This observation prompted us to examine
the effect of deleting
SSY1 in a
gap1
mutant.
We first compared
growth of the
gap1
and
gap1
ssy1
strains on low (1 mM) and
high
(10 mM) concentrations of several amino acids, each used
as the sole
nitrogen source (Fig.
3). Deletion of the
SSY1 gene
in the
gap1
strain dramatically
reduced growth on low concentrations
of isoleucine, leucine, valine,
methionine, phenylalanine, tyrosine,
tryptophan and, to a lesser
extent, threonine (Fig.
3). Growth
of the
SSY1-deleted
strain returned to normal on leucine, valine,
and threonine when the
amino acid concentration was increased
to 10 mM. At this higher
concentration, a clear growth defect
due to lack of Ssy1p was still
visible on isoleucine, phenylalanine,
tyrosine, tryptophan and, to a
lesser extent, methionine.

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FIG. 3.
Deletion of the SSY1 or the AGP1
gene affects the utilization of several amino acids in cells lacking
the general amino acid permease (Gap1p). Cells were spread on minimal
medium with the indicated amino acid at the final concentration of 1 mM
(A) or 10 mM (B) as the sole nitrogen source. The strains were 23344c
(ura3), 32501b (gap1 ura3), 32501d
(gap1 ssy1 ura3), 30633c
(gap1 agp1 ura3), and 32502b
(gap1 ssy1 agp1
ura3).
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The effects of deleting
SSY1 in the
gap1
strain largely overlap with those produced in the same genetic
background by the
wap1
/
agp1
mutation (Fig.
3).
WAP1, a gene originally discovered
during systematic
sequencing of chromosome III (
YCL025c), encodes
a member of
the amino acid permease family (
65). The
WAP1
gene
(
WAP1 for wide-specificity amino acid permease 1) was
also isolated
in our laboratory as part of a study focusing on
induction by
aromatic amino acids of the
ARO9 gene encoding
aromatic aminotransferase
II. In that study, among mutants displaying
reduced induction
of an
ARO9-lacZ fusion gene, one turned
out to bear two mutations:
one in the
GAP1 gene and another
in the
WAP1 gene. In this
gap1-92 wap-1-1 mutant
strain, induction of
ARO9-lacZ is reduced severalfold
compared to the wild type, an effect most likely due to partial
inducer
exclusion (
36a). As this study was being prepared, a
functional and expression analysis of the
YCL025c/WAP1 gene
was
reported and the gene was named
AGP1 (for asparagine and
glutamine
permease) (
76). Hence, the
AGP1
nomenclature will hereafter
be used
here.
Deletion of the
AGP1 gene in the wild-type strain did not
affect amino acid utilization (data not shown), but in the
gap1
strain it produced phenotypes similar to those of
the
gap1
ssy1
mutant, except on valine (1 mM), methionine (1 to 10 mM), phenylalanine
(10 mM), and tryptophan (10 mM), where growth of the
gap1
ssy1
strain
was more strongly affected than that of the
gap1
agp1
strain (Fig.
3). These results are consistent with
SSY1 being
needed for the function of the Agp1p permease,
but since the growth
deficiency caused by the
ssy1
mutation is broader than that caused
by the
agp1
mutation, at least one additional amino acid permease
is likely
affected by the
ssy1
deletion. The fact that the
ssy1
strain is resistant to five toxic amino acid
analogues and that
the
agp1
strain is sensitive to them
(not shown) is also consistent
with Ssy1p affecting other amino acid
permeases in addition to
Agp1p.
These assumptions were confirmed by amino acid uptake assays with cells
growing on urea as the sole nitrogen source. Representative
data
obtained with the amino acids leucine, isoleucine, phenylalanine,
and
tyrosine are shown in Fig.
4. All four
amino acids were immediately
incorporated into
gap1
cells
at a relatively low rate, but uptake
rapidly accelerated, a behavior
typically observed in the case
of permeases induced in the presence of
their own substrates (
4).
In the
gap1
agp1
double mutant, the inducible uptake of each
amino
acid was largely, though not entirely, suppressed (Fig.
4). Thus, the
inducible leucine, isoleucine, phenylalanine, and
tyrosine uptake
activities displayed by
gap1
cells growing on
minimal
urea medium are largely attributable to the product of
the
AGP1 gene. The fact that
gap1
agp1
cells still display residual
inducible uptake
activity suggests that each amino acid is incorporated
by at least one
additional inducible permease. In the
gap1
ssy1
mutant, finally, all four amino acids were
incorporated at a low
and apparently constant rate, indicating that
Agp1p and the additional
permease(s) normally induced in response to
leucine, isoleucine,
phenylalanine, and tyrosine are inactive in the
ssy1
strain.
These results are consistent with the growth
test data and show
that Ssy1p is required for the activity of at least
two inducible
amino acid permeases, one being Agp1p.

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FIG. 4.
Deletion of the SSY1 or AGP1 gene
alters incorporation of amino acids. The time course of
14C-labeled leucine, isoleucine, phenylalanine, and
tyrosine (initial concentration, 0.1 mM) accumulation measured in cells
growing on minimal medium with urea as the sole nitrogen source is
shown. The strains were 30629c (gap1 ura3)
( ), 30633c (gap1 agp1 ura3)
( ) and 32501d (gap1 ssy1
ura3) ( ).
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Ssy1p is required for transcriptional induction of the
AGP1 gene in response to multiple amino acids.
A DNA
fragment composed of the first codons of the AGP1 gene
preceded by its promoter region was fused in frame with the
lacZ reporter gene in a low-copy-number plasmid. Wild-type
cells transformed with this AGP1-lacZ-bearing plasmid were
grown on minimal medium containing urea, urea-leucine, urea-isoleucine,
urea-phenylalanine, or urea-tyrosine as the sole nitrogen source(s).
-Galactosidase assays in extracts of steady-state growing cells
(Table 2) clearly showed that
AGP1 is not expressed on urea medium but that its transcription is markedly induced in the presence of each of the four
amino acids (lines 1 to 5). In the ssy1
strain, in
contrast, the AGP1-lacZ gene remained uninduced (lines 1 to
5). We then tested the influence of other amino acids on expression of
the AGP1-lacZ gene. Remarkably, many other amino acids
induced transcription of the AGP1-lacZ gene, and in all
cases induction was abolished in the ssy1
strain (lines 6 to 23). The level of induction in the wild type, however, varied
strongly according to the amino acid tested. The highest induction
levels were produced by leucine, isoleucine, phenylalanine, tyrosine,
tryptophan, threonine, and methionine, i.e., amino acids on which
growth of the gap1
strain was most affected after
deletion of the SSY1 gene. Intermediate levels of induction
were obtained with valine, citrulline, cysteine, alanine, and serine;
and still lower levels were obtained with lysine, histidine, glutamate,
glutamine, glycine, aspartate, and asparagine. 4-Aminobutyrate (GABA),
arginine, and ornithine were very poor inducers, and the presence of
proline or certain other nitrogenous compounds that can serve as
nitrogen sources (allantoate, allantoin, cytosine, and adenine) had no
influence on AGP1-lacZ expression. In conclusion,
transcription of the AGP1 gene is induced by many amino
acids (a notable exception being proline), and this induction requires
a functional SSY1 product.
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TABLE 2.
The Ssy1 protein is required for transcriptional
induction of the AGP1 gene in response to multiple
amino acidsa
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AGP1 encodes a broad-specificity, low-affinity amino
acid permease.
That the AGP1 gene is induced to various
degrees by multiple amino acids suggests that the amino acid permease
encoded by this gene has a broad substrate specificity. In amino acid
uptake experiments (Fig. 4), induction of AGP1 clearly led
to markedly increased uptake of leucine, isoleucine, phenylalanine, and
tyrosine. These uptake assays in fact show that, apart from the general amino acid permease, Agp1p is the main entry pathway for these four
amino acids (used at 0.1 mM concentrations) in cells growing under
conditions of nitrogen derepression. To further explore the substrate
specificity range of the Agp1p permease, we compared in the
gap1
and gap1
agp1
strains
the initial uptake rates of several amino acids present at a 0.1 mM
concentration (Table 3). To induce
AGP1 expression, we grew the strains on minimal urea medium
supplemented with citrulline (0.5%). We found that citrulline used at
this concentration does not significantly interfere with Agp1p-mediated
uptake of amino acids (inhibition was
10%), i.e., it behaves like a
gratuitous inducer of AGP1 expression. In the
gap1
strain grown under these conditions, Agp1p proved responsible for a significant portion of the initial uptake of many
amino acids, including leucine (96%), isoleucine (86%), tyrosine (83%), valine (82%), phenylalanine (78%), threonine (77%),
methionine (68%), glutamine (64%), serine (62%), alanine (60%),
histidine (54%), glycine (49%), and asparagine (25%). It contributed
negligibly to the uptake of tryptophan, proline, arginine, aspartate,
glutamate, and lysine (0 to 15%). Hence, most amino acids inducing
high-level expression of AGP1 appear to be substrates of
Agp1p. The fact that deletion of AGP1 in a
gap1
mutant alters growth on only some of the Agp1p
substrates is likely due to the existence of other permeases that can
compensate for the lack of Agp1p. For instance, a permease able to
transport glutamine (Gnp1p) has been described (90).
Although we could not detect any significant contribution of Agp1p to
the uptake of tryptophan, proline, arginine, lysine, glutamate,
aspartate, or citrulline used at concentrations of up to 0.1 mM, at
least some of these amino acids are likely incorporated via Agp1p when
present at a higher concentration. For instance, Agp1p is required for
a gap1 mutant to grow on tryptophan at a 1 mM concentration
(Fig. 3). Agp1p is a relatively low-affinity permease, as judged by the
kinetic parameters of Agp1p-mediated leucine uptake
(Km = 0.16 mM; Vmax = 100 nmol · min
1 · mg of
protein
1), isoleucine (Km = 0.6
mM; Vmax = 175 nmol · min
1 · mg of protein
1) and
phenylalanine (Km = 0.6 mM;
Vmax = 60 nmol · min
1
· mg of protein
1).
Nonexpression of the AGP1 gene in the
ssy1
mutant is not due to inducer exclusion.
As the
Ssy1p protein is a member of the amino acid permease family, one might
argue that noninduction of AGP1 in the ssy1
strain is due to insufficient incorporation of the inducing amino acids. To test this possibility, we grew the wild type and the ssy1
strain, both harboring the AGP1-lacZ
fusion gene, on minimal urea medium. After addition of
14C-labeled leucine, isoleucine, tyrosine, or
phenylalanine, culture samples were withdrawn at intervals and used in
parallel experiments to assay
-galactosidase activity and the
incorporation of 14C-labeled amino acids (Fig.
5). AGP1-lacZ was induced in
response to each amino acid tested, and this induction was abolished in the ssy1
strain. The ssy1
strain
incorporated all four amino acids at a high rate, so noninduction of
the AGP1-lacZ gene in the ssy1
strain is not
due to inducer exclusion. In fact, the ssy1
strain even
accumulated greater amounts of 14C-labeled amino acids than
did the wild type, an effect not further investigated here. Whatever
might cause this effect, it is clear that noninduction of the
AGP1 gene in the ssy1
mutant is not due to
reduced uptake of amino acid inducers. Rather, Ssy1p behaves like a
regulatory factor essential to transcriptional induction of the
AGP1 gene in response to multiple amino acids.

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FIG. 5.
Noninduction of the AGP1 gene in the
ssy1 mutant is not due to inducer exclusion. The time
course of accumulation of 14C-labeled amino acids (initial
concentration, 0.1 mM) (solid symbols) and of the increase in
-galactosidase activity (open symbols) in strains 32501a
(ura3) (squares) and 32501c (ssy1
ura3) (circles) transformed with the YCpAGP1-lacZ
plasmid and initially growing on minimal medium with urea as the sole
nitrogen source is shown.
|
|
Ssy1p mediates induction of the AGP1 gene in response
to external amino acids.
In a next set of experiments we addressed
the question of whether Ssy1p-dependent expression of the
AGP1 gene is induced in response to intracellular or
extracellular amino acids. For comparison, we extended this analysis to
the ARO9 gene inducible by aromatic amino acids. Unlike
AGP1, induction of ARO9 by tryptophan is normal in the ssy1
mutant but is abrogated in cells deleted of
ARO80, a gene encoding a transcription factor of the
Cys6-Zn2 family. Conversely, induction of
AGP1 by aromatic amino acids is normal in the
aro80
mutant (36a). Thus, the presence of
tryptophan leads to transcriptional induction of both the
AGP1 and ARO9 genes, but the regulatory pathway
involved in induction is apparently different for each gene. Expression
of AGP1-lacZ and ARO9-lacZ was assayed in a
trp2fbr mutant, in which anthranilate synthase
(Trp2p) is resistant to feedback inhibition by tryptophan
(51). In keeping with previous reports (51, 82),
this mutant growing on urea medium was found to accumulate endogenously
synthesized tryptophan to levels that were at least 70-fold higher than
in the wild-type (Table 4, lines 1 and
2). Expression of AGP1-lacZ and ARO9-lacZ was
also assayed in the gap1-92 agp1-1 strain, in which
tryptophan is incorporated at a much lower rate than in the wild type
(Fig. 6). In the gap1-92 agp1-1 strain growing on urea medium, the intracellular tryptophan pool is as low as in the wild type; by 90 min after the addition of
tryptophan (5 mM), it was about the same as in the
trp2fbr mutant growing on urea medium (Table 4,
line 3). The results of
-galactosidase assays show that
ARO9-lacZ is induced in cells that accumulate intracellular
tryptophan. In contrast, AGP1 remains insensitive to the
intracellular accumulation of tryptophan (lines 1 and 2) and is
specifically induced when tryptophan is added to the culture medium
(line 3). This result clearly shows that AGP1 is induced in
response to extracellular rather than intracellular tryptophan. The
role of Ssy1p is likely to detect the external amino acid and to
activate a signal transduction pathway leading ultimately to
transcriptional induction of the AGP1 gene.

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FIG. 6.
The gap1-92 agp1-1 strain is largely
defective in tryptophan transport. The time course of
14C-labeled tryptophan accumulation (initial external
concentration, 5 mM) in strains 23344c (ura3) ( ) and
30622a (gap1-92 agp1-1 ura3) ( ) initially growing on
minimal medium with urea (5 mM) as the sole nitrogen source is shown.
|
|
Induction of AGP1 requires Grr1p.
The Snf3p and
Rgt2p proteins of the sugar transporter family act as sensors of
external glucose concentration, sensors that can generate intracellular
signals leading to glucose-regulated transcription (55, 67).
The Grr1p protein plays a central role in the transduction of this
glucose signal. This is shown, for instance, by the fact that
grr1 mutations relieve repression of many
glucose-repressible genes (8, 28) and prevent induction by
glucose of several HXT genes encoding glucose transporters (68). Grr1p is also involved in regulating the cell cycle,
as it is required for degradation of the G1 cyclins Cln1p
and Cln2p (11). Grr1p is in fact a component of a
ubiquitin-protein ligase complex (SCFGrr1)
(52) possibly involved in coupling nutrient availability to gene expression and cell cycle regulation (11, 54). In
addition to impaired glucose signaling, grr1 mutants display
a number of other defects, including reduced uptake of aromatic amino
acids (28) and leucine (69). These observations
prompted us to test the role of Grr1p in Ssy1p-mediated induction of
the AGP1 gene. A mutant strain with a complete deletion of
GRR1 was isolated and used to monitor expression of the
AGP1-lacZ gene. Induction of AGP1-lacZ by amino
acids was abolished in the grr1
strain (Table
5). Hence, Grr1p is essential to the
transduction of signals generated not only by the Snf3p and Rgt2p
glucose sensors, but also by the Ssy1p amino acid sensor.
Induction of AGP1 requires Uga35p, a transcription
factor of the Cys6-Zn2 family.
The
UGA35(DAL81/DURL) gene encodes a transcription
factor of the Cys6-Zn2 family, which is
required for full induction of several nitrogen utilization genes
(16, 21). These include the GABA-inducible genes involved in
GABA utilization (UGA1, UGA2, and
UGA4) (84, 85) and the allophanate-inducible
genes involved in urea (DUR1-2 and DUR3),
allantoate (DAL7), and arginine (CAR2) utilization (34, 40, 80). Induction of these genes requires a second transcription factor which, unlike Uga35p, is inducer specific
(85). In the case of the GABA-inducible genes, the second
factor is Uga3p (2); it is DurMp(Dal82p) in the case of
allophanate-inducible genes (5, 40). In previous
experiments, we observed that the uga35 mutant displays
resistance to
-2-thienylalanine (unpublished data). Although this
resistance was not as pronounced as for the ssy1
mutant,
we tested the role of Uga35p in the induction of AGP1 (Table
5). The results clearly show that the induction of AGP1-lacZ
is dramatically reduced in a uga35
mutant. It is unaltered, however, in uga3 and durM mutants
(data not shown). These results reinforce the previous conclusion that
Uga35p is a pleiotropic factor involved in several transcriptional
induction pathways (85). Uga35p does not seem, however, to
specifically mediate Ssy1p-dependent induction, since it is also
essential to allophanate-induced transcription (40, 85).
Furthermore, Uga35p is required for induction of the UGA4
gene by GABA (84), a regulation unaltered in the
ssy1
mutant (data not shown).
Ssy1p is required for induced transcription of at least five
additional amino acid permease genes.
To find additional genes
that might display Ssy1p-dependent induction by amino acids, we
purified total RNA from wild-type and ssy1
strains grown
in the presence or absence of amino acids, treated it with DNase, and
used it in RT-PCR experiments (see Materials and Methods). This
approach enabled us to rapidly estimate the relative amounts of
transcripts of several genes of the amino acid permease family. These
included the inducible BAP2 gene proposed to encode a
branched-chain amino acid permease (31), the
BAP3(PAP1) gene encoding a close homologue of
Bap2p (60), and several genes encoding probable amino acid
permeases of unknown substrate specificity, namely, ALP1
(78), YFL055w (63), YPL274w
(17), YBR132c (27), and
YLL061w (44). Some previously characterized
genes, such as MUP1 and MUP3 (38),
TAT1 and TAT2 (9, 75), and
GNP1 (90), were also included in this analysis
because the reported experiments on expression of these genes were
carried out in complex medium or in minimal medium containing amino
acids to compensate for amino acid auxotrophies, i.e., under conditions
where the expression of Ssy1p-responsive genes should appear
constitutive. In the RT-PCR experiments (Fig.
7), the amplified signal corresponding to
the AGP1 gene was undetectable in urea-grown cells but was very strong when phenylalanine or leucine was added to the cultures 90 min before they were harvested. As expected, the signal remained undetectable in the ssy1
mutant after amino acid
addition. The BAP3, TAT1, TAT2,
BAP2, and GNP1 genes also displayed increased expression upon addition of leucine or phenylalanine, whereas their
expression was barely detectable in the ssy1
mutant.
Expression of ALP1, YFL055w, YPL274w,
YBR132c, YLL061w, MUP1, and
MUP3 did not appear significantly different in wild-type and
ssy1
cells (data not shown). As expected, the signal
corresponding to the GAP1 gene was roughly constant under
all of the tested conditions. Although the results of these RT-PCR
experiments must be confirmed by more-quantitative methods, they
clearly show that several genes encoding amino acid permeases are under
the positive control of the Ssy1p amino acid sensor.

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FIG. 7.
The Ssy1p amino acid sensor affects expression of
multiple amino acid permease genes. The results of RT-PCR analysis of
the total RNA from strains 23344c (ura3) and 32501c
(ssy1 ura3), with oligonucleotide primers
specific to the actin gene (ACT1) and to several genes
encoding amino acid permeases (see Materials and Methods), are shown.
The cells were grown on minimal urea medium. At time zero,
phenylalanine (5 mM) (Phe) or leucine (5 mM) (Leu) was added to part of
the cultures, and the cells were collected after 90 min.
|
|
 |
DISCUSSION |
In this study, we report the characterization in S. cerevisiae of Agp1p, a new broad-specificity amino acid permease.
We show that transcription of the corresponding gene is induced in
response to extracellular amino acids in a manner dependent on (i) an
amino acid permease homologue acting as a sensor (Ssy1p), (ii) an F-box protein involved in glucose signaling and cell cycle control (Grr1p), and (iii) a transcription factor of the
Cys6-Zn2 family involved in other nitrogen
induction pathways (Uga35p) (Fig. 8).
Furthermore, we provide evidence that this new nutritional signaling
pathway influences the transcription of at least five other amino acid permease genes.

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FIG. 8.
Schematic presentation of the role of the permease-like
amino acid sensor Ssy1p in the transcriptional regulation of amino acid
permease genes in S. cerevisiae.
|
|
Agp1p, a broad-specificity amino acid permease in S. cerevisiae.
Agp1p has the properties of a wide-specificity amino
acid permease. Synthesis of this permease is associated with more-rapid uptake of many amino acids, including leucine, isoleucine, valine, threonine, phenylalanine, tyrosine, serine, methionine, alanine, glutamine, histidine, asparagine, and glycine (Table 3). Furthermore, growth tests suggest that Agp1p can also import tryptophan if present
at a sufficiently high concentration. Agp1p appears as a relatively
low-affinity permease. For instance, the Km
values for isoleucine, leucine, and tyrosine transport are in the
10
4 molar range and those for the transport of other
amino acids, such as tryptophan, are probably much higher. Growth tests
illustrate the importance of Agp1p in amino acid utilization: together
with Gap1p, Agp1p is the main amino acid permease ensuring growth on isoleucine, leucine, phenylalanine, tyrosine, and tryptophan as the
sole nitrogen source and also contributes significantly to the
utilization of valine, methionine, and threonine (1 mM). The absence of
any clear growth defect of the gap1 agp1 strain when grown
on higher concentrations of some of these amino acids (10 mM) or on
other substrates of Agp1p such as glutamine, asparagine, serine, and
alanine is likely due to the activity of other amino acid permeases
which can compensate for the lack of Agp1p. Interestingly, our growth
tests failed to show any contribution of Bap2p, defined as the major
branched-chain amino acid permease (31), in the utilization
of leucine and isoleucine (1 mM) as the sole nitrogen source (Fig. 3).
Similarly, Tat1p, defined as a major tyrosine permease in yeast cells
(75), is unable to ensure tyrosine utilization at a 1 to 10 mM final concentration (Fig. 3). These observations raise questions as
to the actual physiological function of these permeases.
As this paper was being written, it was reported by Schreve et al.
(
76) that the primary substrates of Agp1p are asparagine
(
Km = 0.29 mM) and glutamine
(
Km = 0.79 mM), and the permease
was named Agp1p
to reflect this substrate specificity. It was
further suggested that
Agp1p mediates the uptake of other amino
acids but that the affinity of
the permease for these amino acids
is lower than for asparagine and
glutamine (
76). These data
are hardly consistent with the
Km values of Agp1p for leucine
(0.16 mM),
isoleucine (0.6 mM), and phenylalanine (0.6 mM) transport.
Rather, the
affinity of Agp1p appears to be in the same range
for many amino acids.
Schreve et al. also reported that the pattern
of
AGP1
expression according to the nitrogen source is very similar
to that of
the
GAP1 gene: the reason why the induction by amino
acids
was not revealed in these experiments is probably because
the leucine
was systematically added to the growth medium in order
to compensate
for a
leu2 auxotrophy.
Agp1p also mediates methionine uptake (Table
3). It was previously
reported that methionine is transported in yeast cells
by at least
three different permeases: the high-affinity permease
(
Km = 0.013 mM) encoded by the
MUP1
gene, a low-affinity permease
(
Km = 0.2 mM)
whose gene (
MUP2) remained uncharacterized, and
a
very-low-affinity permease (
Km = 1 mM) encoded
by the
MUP3 gene
(
38). The low-affinity permease
is probably Agp1p: its activity
was measured under growth conditions
leading to the induction
of
AGP1, it displays a broad
specificity range, and methionine
transport mediated by this permease
is inhibited by leucine with
an apparent
Ki
value (0.30 mM) (
38) very close to the
Km value
of Agp1 for
leucine.
AGP1 is induced by multiple amino acids: role of a
permease-like sensor of external amino acids.
Transcription of the
AGP1 gene is induced by many amino acids, a notable
exception being proline (Table 2). Induction levels vary considerably
according to the amino acid tested, and most inducing amino acids are
also substrates of the Agp1p permease. Induction of AGP1 is
abolished in mutants lacking Ssy1p, a protein of the amino acid
permease family acting as a sensor of extracellular amino acids. The
first evidence for a role of this protein in amino acid sensing was
recently provided (24). It was found that induction by
leucine (0.23 mM) of the BAP2, BAP3, and
TAT1 genes encoding amino acid permeases (31, 60,
75) and of the PTR2 gene encoding a peptide
transporter (71) is abolished in the ssy1 strain.
Induction of BAP2 by L- or D-leucine
still occurs in a mutant strain largely deficient in L- and
D-leucine uptake, leading to the suggestion that Ssy1p acts
as a sensor of external leucine (24). Using RT-PCR, we have
confirmed that expression of BAP2, TAT1, and
BAP3 is under the positive control of Ssy1p and found that
the same is true of AGP1, GNP1 encoding a
glutamine permease (90), and TAT2 encoding a
tryptophan permease (75). These genes seem, in fact, to be
induced by other amino acids besides leucine (Table 2; Fig. 7, and
unpublished data); this means that Ssy1p is probably involved in the
transcriptional induction of several permease genes in response to
various amino acids. Our data on the AGP1 gene show that
permease genes under the control of Ssy1p are transcriptionally induced
in response to extracellular rather than intracellular amino acids. For
instance, AGP1 remains unexpressed in a
trp2fbr mutant endogenously accumulating
tryptophan to relatively high levels. It is, however, markedly induced
after the addition of tryptophan to a mutant strain largely defective
in tryptophan uptake even though the intracellular tryptophan pool is
about the same as in the trp2fbr strain failing
to induce AGP1. We thus propose that the Ssy1p permease
homologue detects external amino acids and activates, in turn, a
transduction pathway leading ultimately to transcriptional activation
of several permease genes.
The Ssy1p protein displays structural features that clearly distinguish
it from Agp1p, Gap1p, and the other members of the
amino acid permease
family. In particular, its hydrophilic N terminus
is much larger, as
are several regions connecting TM domains and
predicted to be
extracellular (Fig.
2). These features are reminiscent
of those
displayed by the Snf3p and Rgt2p glucose sensors, which
differ from the
other members of the sugar transporter family
by their unusually long
cytoplasmic C-terminal domain (
55,
66,
67). These domains
have been shown to be essential to the role
of Snf3p and Rgt2p as
glucose sensors (
66). Furthermore, grafting
these domains
onto the C terminus of Hxt1p confers to this glucose
transporter the
properties of a glucose sensor (
66). The large
N-terminal
domain of Ssy1p likely plays an important role in generating
the amino
acid signal and could, for instance, mediate interaction
with another
protein. A candidate protein is the
PTR3 gene product
(
10), a hydrophilic 76-kDa protein originally discovered as
a factor essential to the induction of the
PTR2 gene in
response
to amino acids (
37). Mutants affected in this gene
were subsequently
and independently isolated as
shr6
(
49),
ssy3 (
46), and
apf3 mutants (
13a). Although the exact function of Ptr3p remains
undetermined,
the phenotypes of the
ptr3/apf3/ssy3/shr6 and
ssy1 mutants appear
indistinguishable (
13a,
46,
49).
The Ssy1p amino acid sensor might activate a signal transduction
pathway upon binding of amino acids without translocating
them across
the plasma membrane. As such, Ssy1p would act as a
receptor.
Alternatively, Ssy1p-mediated transport of amino acids
could be
essential to the protein's signaling function. This hypothesis,
however, implies that the transport capacity of Ssy1p should be
very
low, since a
gap1
agp1
SSY1+ strain is unable to grow on several amino
acids as the sole nitrogen
source (1 mM) (Fig.
3), even though Ssy1p
effectively transmits
signals in response to these amino
acids.
Grr1p: an F-box protein involved in glucose signaling, amino acid
signaling, and cell cycle control.
The Grr1p protein plays a
central role in transducing signals generated by the Snf3p and Rgt2p
glucose sensors (54) and in degrading G1 cyclins
(11). This F-box protein is a component of a so-called SCF
complex (for Skp1-Cullin-F-box) belonging to a novel class of
ubiquitin-protein ligases (E3) that probably exist in organisms ranging
from yeast to humans (26, 52). A typical SCF complex
consists of (i) Cdc53p, a protein functioning as a scaffold subunit and
belonging to a large, evolutionarily conserved family of proteins
called cullins (62, 70, 88); (ii) an F-box protein, involved
in selecting which potential targets are to be ubiquitinated (70,
77); and (iii) Skp1p, which forms a bridge between Cdc53p and one
of several F-box proteins (Grr1p, Cdc4p, and Met30p) (7).
SCF complexes function in combination with an E2 enzyme catalyzing
transfer of ubiquitin to the target protein. For instance, an SCF
complex containing Grr1p as the F-box protein promotes ubiquitination
of G1 cyclins in conjunction with the E2 enzyme Cdc34p
(22, 81, 89). On the other hand, transduction of the glucose
signal generated by Snf3p leading to induction of the HXT1
gene requires Grr1p, Cdc53p, and Skp1p, but Cdc34p is not needed,
suggesting that another E2 enzyme is involved (54).
In this study, we show that Grr1p is also essential to Ssy1p-mediated
induction of the
AGP1 gene, thus extending the role
of this
F-box protein to an additional regulatory pathway. It
seems reasonable,
therefore, to speculate that transduction of
the signal generated by
the Ssy1p sensor involves an SCF complex
with Grr1p as the
F-box-protein subunit. The complex could be
involved, for instance, in
ubiquitinating a downregulator of Ssy1p-regulated
genes in response to
external amino acids. Regarding possible
targets of this putative
SCF
Grr1 complex, it is noteworthy that
PTR2,
a peptide transporter gene
whose induction by amino acids is Ssy1p
dependent (
24), is under
the negative control of Cup9p
(
50), a short-lived homeodomain
protein
(
t1/2, ~5 min) whose degradation involves the
ubiquitin
pathway (
18). The Ptr1p-Ubr1p protein proposed to
act as a ubiquitin-protein
ligase (
83) is essential both to
Cup9p degradation (
18) and
to
PTR2 induction
(
1,
37). Furthermore, the E2 enzymes encoded
by the
UBC2 and
UBC4 genes appear essential to Cup9
degradation
(
18). We are currently conducting experiments to
test the roles
of Cup9p, Ptr1p-Ubr1p, Ubc2p, Ubc4p and of the SCF
complex components
Skp1p, Cdc53p, and Cdc34p in the expression of amino
acid and
peptide permease genes under Ssy1p
control.
 |
ACKNOWLEDGMENTS |
We gratefully acknowledge the excellent technical assistance of
Catherine Jauniaux. We are also grateful to Michel Hanocq, Jacques
Dubois, Bart Scherens, and Mohamed El Bakkoury for their help in
measuring intracellular tryptophan pools. We also thank Anne-Marie
Marini for fruitful discussions and for critical reading of the manuscript.
This work was supported by the following contracts: The Commission of
the European Communities (EUROFAN, BIO4-CT95-0080), The Fund for
Medical Scientific Research (Belgium, FRSM 3.4602.94), The
International Brachet Stiftung (grant GR97/9-02), and the Communauté Française de Belgique, Direction de la Recherche Scientifique, Actions de Recherche Concertées. I.I. is a
recipient of a predoctoral fellowship from the Communauté
Française de Belgique and from the Fondation Universitaire David
et Alice Van Buuren (Belgium). J.-O.D. and F.B. are recipients of FRIA
(Fonds pour la Formation à la Recherche dans l'Industrie et dans
l'Agriculture) predoctoral fellowships.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratoire de
Physiologie Cellulaire et de Génétique des Levures,
Université Libre de Bruxelles, Campus Plaine CP 244, Bld. de
Triomphe, B1050 Brussels, Belgium. Phone: 32-2-6505428. Fax:
32-2-6505421. E-mail: bran{at}ulb.ac.be.
 |
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