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Molecular and Cellular Biology, March 1999, p. 1841-1852, Vol. 19, No. 3
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
A Low-Affinity Serum Response Element Allows Other
Transcription Factors To Activate Inducible Gene Expression in
Cardiac Myocytes
Wirt A.
Hines,1
Jacqueline
Thorburn,2 and
Andrew
Thorburn2,*
Department of Human
Genetics,1 Huntsman Cancer
Institute,2 Program in Human Molecular Biology
and Genetics, Departments of Oncological Sciences, Human Genetics, and
Internal Medicine, University of Utah, Salt Lake City, Utah 84112
Received 3 September 1998/Returned for modification 22 October
1998/Accepted 10 December 1998
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ABSTRACT |
Hypertrophic growth of cardiac muscle cells is induced by a variety
of physiological and pathological stimuli and is associated with a
number of changes, including activation of genes such as atrial
natriuretic factor. We found that two serum response element (SRE)-like
DNA elements, one of which does not meet the consensus sequence and
binds serum response factor (SRF) with low affinity, regulate the
activity of this promoter. Surprisingly, the ability to induce the
promoter by two different physiologic stimuli, as well as various
activated transcription factors, including SRF-VP16, was primarily
dependent upon the nonconsensus rather than the consensus SRE. This SRE
controls the induction of gene expression via an unusual mechanism in
that it is required to allow some, but not all, active transcription
factors at unrelated sites on the promoter to stimulate gene
expression. Thus, in addition to regulation of SRF activity by growth
stimuli, regulation of a low-affinity SRE element controls inducible
gene expression by modulating the ability of other transcription
factors to stimulate the transcription machinery.
 |
INTRODUCTION |
Postnatal growth of cardiac muscle
cells occurs by hypertrophy rather than by cell division and is
associated with a number of phenotypic changes, including increased
expression of a number of cardiac muscle cell-specific genes such as
atrial natriuretic factor (ANF) (11). Induction of
hypertrophy and activation of the ANF promoter is achieved by many
kinds of stimuli, including growth factors that bind to tyrosine
kinase-linked receptors (34), cytokines that activate
gp130-linked receptors (35), agonists such as phenylephrine
or angiotensin II that activate G-protein-coupled receptors (27,
42, 46), mechanical stretch (43, 58), increased muscle
cell contraction rate (32), and activators of protein kinase
C, such as phorbol esters (3, 13). Given the diverse stimuli
that activate this promoter, ANF is a good model for studying
mechanisms that regulate inducible gene expression.
The ANF promoter contains two serum response element (SRE)-like DNA
elements that are thought to be important for expression (48). Serum response factor (SRF) is one of the best-studied inducible transcription factors, with most of our information coming
from the analysis of the c-Fos SRE. As its name suggests, the SRE
element in the c-Fos promoter is stimulated by serum. SRF is also
activated by other growth factors and quite different stimuli, such as
alterations in the cytoskeleton. In some cases, activation of
SRE-driven gene expression is achieved through accessory factors. The
best-understood such mechanism involves the activation of ternary
complex factors (TCFs), such as Elk-1 or SAP-1, that are recruited by
SRF and are activated as transcription factors by phosphorylation by
mitogen-activated protein (MAP) kinases (21, 25, 26, 30,
57). TCFs such as Elk-1 interact with DNA via an Ets site
adjacent to the SRF-binding site, and activators that induce MAP kinase
activity require an intact TCF site to stimulate the c-Fos promoter.
Other stimuli, such as lysophosphatidic acid (LPA) or Rho family
GTPases, are able to directly activate SRF (21, 22).
Rho-dependent activation of SRF is not mediated through MAP kinases,
does not appear to require TCFs, and involves as-yet-unidentified Rho
effector pathways (22, 44).
Many and perhaps all of the stimuli that lead to cardiac hypertrophy
and expression of ANF cause activation of one or more MAP kinase
cascades (5-8, 38, 40, 41, 47, 52, 59). The role of MAP
kinases in the regulation of this promoter has been confusing, with
conflicting data regarding the roles of the ERK and SAPK-JNK pathways
in gene expression (17, 18, 33, 37, 49, 51, 52, 56).
Recently, more-consistent results from a number of groups have
demonstrated that activation of the p38 pathway is sufficient to
stimulate the ANF promoter (33, 55, 59).
We wished to examine the mechanism by which different stimuli are able
to activate the ANF promoter. We first assessed the role of p38 in ANF
induction by two different physiological stimuli: the alpha-1
adrenergic agonist phenylephrine and electrical-pacing-induced contraction. Electrical-pacing-induced, but not phenylephrine-induced, expression requires p38, and this is achieved in part through a cyclic
AMP response element (CRE)-like DNA element in the promoter. In
addition, both of these p38-dependent and p38-independent stimuli also
require input from the SRE elements. Both SRE elements are important
for the regulation of the basal activity of the promoter, but only the
nonconsensus SRE regulates induction by phenylephrine, electrical
pacing, and even overexpression of activated forms of SRF and
GAL4-transcription factor fusion proteins. We find that hypertrophic
stimuli activate SRE-regulated expression in a manner distinct from
activation of SRF itself by serum, Rho, or LPA (22). Rather,
the nonconsensus SRE is required to allow some, but not all, activated
transcription factors at other sites on the promoter to stimulate gene
expression. This mechanism therefore represents a method of inducible
gene regulation where a regulated DNA element works by discriminating
between activated transcription factors at other sites on the promoter
and controlling their ability to induce the basal transcription machinery.
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MATERIALS AND METHODS |
Cell culture and transfections.
Cardiac muscle cells were
cultured and transfected as previously described (24, 49,
51) except that for the electrical pacing experiments, the cells
were plated at a higher density (2,000/mm2) than for the
other treatments (260/mm2); this increased density is
required for efficient electrical pacing in vitro. All transfections
were conducted in duplicate or in triplicate in 3.5-cm tissue culture
dishes by using the calcium phosphate precipitation method. Prior to
transfection, all plasmids were purified by alkaline lysis followed by
polyethylene glycol precipitation. Luciferase and
-galactosidase
activity were assayed on a Dynatec MLX luminometer 48 h after
transfection by harvesting the cells in reporter lysis buffer (Promega,
Madison, Wis.) and incubation with the appropriate light emission
accelerator (Tropix, Bedford, Mass.; Promega) reaction buffer. The data
shown for each experiment represents the mean ± The Standard
error of the mean for a single experiment that was representative of at least three repeated experiments.
Cell treatments.
Cells were treated as required with
phenylephrine (5 to 100 µM) (Sigma, St. Louis, Mo.) and p38 inhibitor
SB203580 (20 µM) (Calbiochem, La Jolla, Calif.) for 48 h. The
media with and without inhibitors was replaced every 24 h for all
cultures. For electrical stimulation to induce muscle cell contraction,
the cells were plated in 24-well plates that were electrically
connected via an agarose salt bridge and stimulated with a custom-built
stimulator. In this case controls were from the same plate of cells but
from wells that were not electrically paced.
Plasmids.
Expression plasmids encoding SRF and SRF-VP16 were
provided by Art Alberts and Richard Treisman (ICRF, London, United
Kingdom). GAL4-VP16 was provided by Don Ayer (University of Utah). The
MEK6 expression plasmid was provided by Bernd Stein (Signal
Pharmaceuticals, La Jolla, Calif.), and the MEKK1 expression plasmid
was provided by Melanie Cobb (University of Texas Southwestern, Dallas,
Tex.). The Raf:ER expression plasmid (50) was based on a
molecule provided by Martin McMahon (University of California at San
Francisco). GAL4-ATF2, GAL4-Jun, and GAL4-Elk expression plasmids were
obtained from Stratagene (La Jolla, Calif.). All luciferase reporter
plasmids were compared to a cotransfected Rous sarcoma virus-LacZ
plasmid that was provided by Michael Kapiloff (OHSU, Portland, Oreg.). Promoter mutations were constructed by site-directed mutagenesis with
the Quickchange Kit (Stratagene) in a
638 ANF luciferase plasmid,
which was constructed in pGL3basic (Promega), or in the
132
ANF-luciferase, which is a HindIII truncation of the
same plasmid. Mutations were constructed as follows: SRE1, bases
114 to
104 (CTTTAAAAGG) mutated to CGCGGATCCG;
SRE2, bases
406 to
396 (CCTTATTTGG) mutated to
CGCGGATCG; SRE1
SRE2, bases
114 to
104
(CTTTAAAAGG) mutated to CCTTATTTGG;
SRE2
SRE1, bases
406 to
396 (CCTTATTTGG)
mutated to CTTTAAAAGG; SRE1
cFos, bases
114 to
104 (CTTTAAAAGG) mutated to CCATATTAGG;
SRE1
SREP, bases
114 to
104 (CTTTAAAAGG)
mutated to ACATATTAGT; SRE1T
C, bases
114 to
104 (CTTTAAAAGG) mutated to CCTTAAAAGG;
SRE1
SRE2, bases
114 to
104 (CTTTAAAAGG)
mutated to CCTTATTTGG and bases
406 to
396
(CCTTATTTGG) mutated to CTTTAAAAGG; and mutCRE,
bases
601 to
593 (TGACTTCA) mutated to GGATCCCA.
Reporter plasmids were also constructed by using the core
SRE elements with flanking KpnI sites cloned into a basal
promoter (pGL3prl, provided by Michael Kapiloff) that contains 72 bp of
the prolactin promoter, including the TATA box. The SRE2 element was
also ligated to the end of the
132 promoter to create
132 SRE by
using these same KpnI sites. In addition, a 300-bp piece of
DNA was amplified from the kanamycin gene and fused to the
132
reporter, and then three copies of the SRE2 element were fused to this
molecule. Finally, two GAL4 sites were fused to the
132 ANF to create
132GAL4. All of the promoter constructs were checked by sequencing.
In some cases the mutant promoters were repaired by further mutagenesis to recreate the wild-type sequence as a control for mutagenesis specificity.
In vitro DNA binding.
SRF protein was prepared by coupled in
vitro transcription-translation of a T7-driven SRF plasmid in
reticulocyte lysate by using the TNT kit (Promega). Then, 1 µl of
lysate programmed with either SRF or luciferase (provided by Promega)
cDNAs was incubated with the appropriate double-stranded DNA probe for
30 min at room temperature in 10 mM HEPES (pH 7.9), 50 mM KCl, 0.1 mM
EDTA, 0.1 mM EGTA, and 10% glycerol, along with 2 µl of poly(dI-dC)
per 20-µl reaction. DNA-protein complexes were resolved on a 5%
acrylamide gel in 0.5× Tris-borate buffer. All probes were double
stranded and were radiolabeled with [
32P]ATP. The
following are single-stranded sequences of the probes, with the core
SREs underlined: SRE1(114) short,
GGCTATACTTTAAAAGGCCGATAT; SRE2(406) short,
GGCTATACCTTATTTGGCCGATAT; SRE1(
114),
TCGCTGGACTGATAACTTTAAAAGGGCATCTTCTCCTGGC; and
SRE2(
406), TGCCTCTCCTCCCGCCCTTATTTGGAGCCCCTGACAGCTG.
For competition assays, 5×, 10×, 100×, or 1,000× cold
double-stranded SRE1(114) short or SRE2(406) short was coincubated in
reactions with double-stranded radiolabeled SRE2(406)-short probe as
described above.
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RESULTS |
p38-dependent activation of ANF gene expression.
To first
determine if diverse hypertrophic stimuli require the p38 MAP kinase,
we used the p38 inhibitor SB203580 in transient-transfection experiments with ANF-luciferase reporter plasmids in neonatal rat
ventricular myocytes. The myocytes were then stimulated by two
different physiological stimuli: phenylephrine, which activates the
-adrenergic receptor, and electrical pacing to increase the contraction rate. Figure 1A shows that
ANF-luciferase expression is increased in paced cells (2.5 Hz) compared
to unpaced cells and that this activation is inhibited by the p38
inhibitor. In the same experiment, the p38 inhibitor failed to reduce
phenylephrine-induced expression. We conclude that the basic signaling
mechanisms that are used by phenylephrine and electrically stimulated
contraction to induce ANF-luciferase expression differ in their
requirement for p38 in these culture conditions.

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FIG. 1.
Pacing- but not phenylephrine-induced ANF expression
requires p38. (A) Cells were transfected with ANF-luciferase and then
treated with phenylephrine (PE) or electrically paced to induce
contraction at 2 Hz in the presence or absence of the p38 inhibitor SB
203580 (SB). Both electrical pacing and phenylephrine-induced
ANF-luciferase expression, but inhibition of p38 only reduced
pacing-induced expression. (B) Schematic of truncation mutants of the
638 ANF promoter, indicating putative transcriptional elements. (C)
Cells were transfected with control vectors, expression vectors for
wild-type or activated MEK6, and various truncations of the ANF
promoter driving luciferase or a mutation in a CRE-like element. Note
that MEK6 activity induces the ANF promoter and that this is partially
inhibited by mutation or truncations that remove the CRE-like element.
Complete inhibition of activation occurs when an SRE-like element is
deleted ( 77). (D) Cells were transfected with the wild-type 638
promoter, or one which contains the CRE mutation, and then stimulated
by phenylephrine or pacing. Both stimuli induced the wild-type promoter
and while the CRE mutation significantly inhibited pacing-induced
expression, it had no effect on phenylephrine-stimulated expression.
(E) Cells were transfected with the 638 promoter or a mutant promoter
in the SRE1 sequence (ANF-SRE1-Luc) and treated with phenylephrine,
cotransfected with active MEK6, or electrically paced. Activation of
the SRE1 mutant promoter is compromised for all stimuli.
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MAP kinase-induced gene expression is achieved through direct
phosphorylation of transcription factors, leading to increased
transcriptional activity. The ANF promoter contains a number of
DNA
elements that could potentially regulate induction (Fig.
1B).
To begin
to identify the transcription factors that mediate regulation
of the
ANF promoter in response to these diverse signaling pathways,
we
performed a deletion analysis to determine the sites that are
responsible for MEK6 (and thus p38)-dependent activation of this
gene.
Figure
1C shows the results of a deletion analysis through
a portion of
the ANF promoter that contains 638 bp of promoter
sequence where
expression was induced by overexpression of wild-type
MEK6 or a
constitutively active MEK6 molecules (MEK6DD), i.e.,
treatments that
should lead only to p38 activation. We found two
truncations (

551)
and (

77) that had a strong inhibitory effect
on MEK6-induced
ANF-luciferase expression. The first deletion
reduced induction by
about 50% and removed a CRE-like element.
We therefore mutated this
element (mutCRE) and tested the induction
of this promoter with active
MEK6. Mutation or deletion of the
CRE element both led to similar 50%
reductions in MEK6-induced
gene expression. We conclude that this
element is a target for
p38-dependent signals, presumably via
transcription factors such
as ATF2 that can be activated by the
stress-induced MAP kinases
and that can bind to CRE elements (
19,
53). If this DNA element
is actually the target for p38-dependent
signaling, we might expect
that the mutCRE promoter molecule would be
less sensitive to phenylephrine
induction than to pacing induction.
Figure
1D shows that this
is indeed the case when direct comparison of
induction between
the wild-type promoter and the CRE mutant are
examined in response
to either phenylephrine or
pacing.
We noted that while the CRE deletion or mutation had a significant
effect on MEK6-induced gene expression, it did not completely
abolish
transactivation. The truncation that completely abolished
MEK6-induced
gene expression removed a DNA element with the sequence
CTTTAAAAGG. This sequence, which we denote as SRE1, is
similar
to the consensus binding sequence for SRF
(CCA/T
6GG). To determine
whether the SRE was important for
the induction of ANF gene expression,
we mutated the SRE1 and tested
whether this affected gene expression
stimulated by MEK6,
phenylephrine, or pacing. Figure
1E shows
that mutation of this
SRE-like element inhibited expression by
all of the stimuli that were
tested including phenylephrine, which
is not affected by the p38
inhibitor. Thus, in contrast to the
CRE mutation, the SRE1 element was
a target for both p38-dependent
and p38-independent signals. This
observation led us to further
investigate the role of the SREs in
regulating the induction of
the ANF
promoter.
SRF binds preferentially to SRE2 compared to SRE1.
Since
several diverse stimuli appeared to require the same DNA element for
maximal induction (SRE1), we focused our subsequent studies on the
mechanism of action at the ANF SRE elements. The ANF promoter contains
two SRE-like elements; SRE2 matches the consensus binding sequence,
while SRE1 does not. To test whether SRF could bind to these sequences,
we performed binding studies by using in vitro-translated SRF and the
core SRE elements. Figure 2A shows that
SRF can bind efficiently to the core SRE2 element but that binding to
the core SRE1 element was barely detectable. SRF bound with similar
efficiency to the core c-Fos SRE as to SRE2 (data not shown). Figure 2B
shows competition assays with SRE2 as probe, which was coincubated with
excess cold SRE1 or SRE2. It was evident that these SREs have different
affinities for SRF, since 5× cold SRE2 was more effective at
competition than 1,000× cold SRE1. The nonspecific band below the
shifted complex is competed off almost equally well by both
competitors. To test whether SRF could bind if we included more
flanking sequences, we repeated experiments shown in Fig. 1A with
40-mer oligonucleotides containing either the SRE1 sequence or the SRE2
sequence in the middle of native flanking ANF sequences. Figure 2C
indicates that SRF can in fact bind to both SRE1 and SRE2 when longer
oligonucleotides are used. However, binding was considerably stronger
to the consensus SRE2 sequence than to the nonconsensus SRE1 sequence.
A nonspecific band occurs in all lanes in a position near, but distinct
from, the supershifted complex. Cardiac nuclear extracts contain a
protein that binds to these sequences and which can be shifted by
anti-SRF antibodies (reference 48 and data not
shown). We found that this band was stronger when the consensus SRE2
element rather than the nonconsensus SRE1 element is used in the
binding assay (data not shown).

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FIG. 2.
SRF binding to SRE1 and SRE2. (A) In vitro binding
reactions with SRF or luciferase from reticulocyte lysate in the
presence of anti-SRF antibody as indicated, along with the core SRE1
(SRE1 short) and SRE2 (SRE2 short) probes. SRF binds more efficiently
to SRE2 than to SRE1. (B) Competition assay with SRE2 as a probe along
with excess cold SRE1 or SRE2. (C) Binding reactions similar to those
in panel A but with longer oligonucleotides that contained 15 bp of the
native ANF flanking sequence on either side of the two core SRE
elements and the indicated antibodies. Although both SREs can bind to
SRF, SRE2 binds much more efficiently than did SRE1. (D) Minimal
promoters driven by single copies of SRE1 or SRE2 were transfected into
cardiac muscle cells along with SRF-VP16 or empty vector and treated
100 µM phenylephrine (PE). The SRE2-luciferase plasmid is stimulated
by SRF-VP16 but not by phenylephrine. SRE1-luciferase is not
significantly stimulated by either phenylephrine or SRF-VP16.
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To test whether SRF could bind to these SREs in intact heart cells, we
constructed reporter plasmids that consist of a minimal
promoter fused
to the core SRE1 or SRE2 sequences. Figure
2D shows
an experiment where
an expression plasmid encoding a full-length
SRF cDNA fused to the
transactivation domain from the strong viral
transcription factor VP16
was transfected along with SRE1 or SRE2
reporters. SRF-VP16 activated
the reporter plasmids that contain
the consensus SRE2 sequence but not
the SRE1 sequences. These
data indicate that SRF-VP16 can bind more
efficiently to the SRE2
sequence than to the SRE1 sequence in cardiac
muscle cells. We
also tested whether phenylephrine treatment or
electrical pacing
stimulated gene expression that was controlled by
these elements.
The SRE2-driven reporter was modestly activated by less
than 50%
by phenylephrine, while the SRE1-driven reporter was not
stimulated
at all by this agonist. Electrical pacing also failed to
stimulate
expression from these constructs (data not shown). These data
suggest that phenylephrine activates SRF differently than does
serum or
the Rho family GTPases, where SRF bound to a minimal
SRE is a more
effective transcription factor in the presence of
the stimulus (
2,
21,
22). Taken together, these experiments
produce the expected
result: the SRE2 element that matches the
consensus binding sequence
functions as an effective SRF binding
element, while the nonconsensus
SRE1 element does not, and the
two SRE elements are therefore not
equivalent to each other. In
addition, the SRE1 sequence, while
critical for induction of the
intact promoter by phenylephrine or
pacing (Fig.
1E), does not
appear to be an independent regulatory
element that is sufficient
for induction in
isolation.
Induction and basal activity of the ANF promoter is dependent on
the SRE elements.
The activity of a gene such as ANF is a product
of both the basal activity of the promoter and the level of induction
by stimuli such as phenylephrine, electrical pacing, or expression of
activated transcription factors such as SRF-VP16. The data shown in
Fig. 1 indicate that the SRE1 element plays a role in the regulation of
ANF induction by several stimuli despite the fact that these stimuli
may utilize different signaling pathways. To more completely examine
the role of the SRE elements in both basal and stimulated gene
expression, we constructed a series of mutant promoters. Figure
3A shows a series of experiments with the
wild-type promoter (
638), a truncated promoter that contained the
SRE1 element but not the SRE2 element (
132), the
638 promoter
containing mutations in SRE1 (no SRE1), mutations in SRE2 (no SRE2), or
mutations in both SREs (no SRE1, no SRE2). We monitored the effects on
the basal activity of the various promoters and the level of induction by phenylephrine or SRF-VP16. The wild-type promoter had a reasonable basal activity and was induced 5.3-fold by phenylephrine and about 8-fold by SRF-VP16. This result indicates that SRF-VP16 can bind to one
or both of the SRE elements in their native context in the ANF
promoter. In contrast, the truncated promoter (
132) that contains
only SRE1 but not SRE2 had reduced basal activity and was only modestly
induced (about twofold) by either phenylephrine or SRF-VP16. A similar
result was obtained with the mutant
638 promoter that contained an
intact SRE2 but a mutant SRE1 element. That is, the basal activity was
reduced compared with the wild-type, whereas phenylephrine and SRF-VP16
induced expression only 3.6- and 2-fold, respectively. The mutant
promoter that contained an intact SRE1 element but a mutant SRE2
element also showed reduced basal activity but was still efficiently
induced (about sixfold) by both phenylephrine and SRF-VP16. The double
mutations in both SREs produced even lower basal levels of gene
expression and again reduced the induction by both stimuli. These data
indicate that the basal activity of the ANF promoter is dependent upon
both SRE1 and SRE2 elements; however, induction by phenylephrine and SRF-VP16 is primarily dependent upon SRE1 but not SRE2. This result is
particularly surprising in the case of SRF-VP16-induced expression. Although SRF binds to SRE2 better than to SRE1 and although SRF-VP16 can activate SRE2- but not SRE1-driven expression in cells (Fig. 2),
the ability to induce the ANF promoter by SRF-VP16 is primarily dependent upon the nonconsensus SRE element that cannot efficiently bind to SRF. A similar result was obtained when we examined activation of the mutant promoters by electrical pacing (Fig. 3B), although in
this case there was also some role for the SRE2 element in induction.

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FIG. 3.
SRE1 and SRE2 regulate basal activity of the ANF
promoter but only SRE1 regulates induction. (A) Activation by
phenylephrine or SRF-VP16 was determined for the 638 promoter, a
truncated promoter ( 132), or the 638 promoter with mutations in
SRE1, SRE2, or both SRE1 and SRE2. All promoters were normalized to
unstimulated wild-type or mutant promoter. The numbers above the bars
represent the fold activation by phenylephrine or SRF-VP16 for each
individual promoter compared to untreated cells. Mutations in either
SRE reduced the basal activity of the promoter; however, only mutation
in the SRE1 element significantly reduced induction by phenylephrine or
SRF-VP16. (B) Wild-type 638 promoter or the SRE1 or SRE2 mutation
were assayed in control cells or in cells that were stimulated by electrical pacing. Contraction-induced gene
expression was significantly inhibited by the SRE1 mutation and only
moderately inhibited by the SRE2 mutation. (C) Activation by
phenylephrine or SRF-VP16 was determined for the wild-type promoter or
for mutant promoters where the SRE1 element was mutated so that it was
identical to SRE2 (SRE1 SRE2), the SRE2 element was mutated to be
identical to SRE1 (SRE2 SRE1), or where the SREs were reversed
(SRE2 SRE1). The basal activity was increased for the
SRE1 SRE2 mutant; however, induction by phenylephrine or SRF-VP16
was reduced. The mutant containing two SRE1 elements had slightly
reduced induction by SRF-VP16 but virtually no reduction in
phenylephrine induction. The SRE2 SRE1 had an expression level
similar to that of SRE1 SRE2. (D) Activation by phenylephrine or
SRF-VP16 of wild-type 638 promoter or mutant promoters, where SRE1
was mutated to the c-Fos SRE sequence or the low-affinity SREP1
sequence (23). Mutation of SRE1 to the c-Fos SRE increased
the basal promoter activity but reduced the induction by either
phenylephrine or SRF-VP16. Mutation to the poorly binding SREP1
sequence reduced both basal activity and induction. (E) Point mutation
of the SRE1 element to more closely match a consensus SRE sequence
(638T C) increased the basal activity of the promoter 6.6-fold
but reduced induction by phenylephrine or SRF-VP16 at all doses of the
two agonists. Note that the data for this set of transfections was
normalized to each unstimulated promoter.
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We performed further mutagenesis studies to change the sequence of the
two SRE elements. We constructed a promoter that contained
either a
mutant SRE1 element that was identical to SRE2
(SRE1

SRE2), a molecule that contains mutations to convert the
SRE2
sequence to SRE1 (SRE2

SRE1), or a construct that reverses
the
two SRE elements (SRE2

SRE1). These molecules were again
compared
to the wild-type molecule that contained one copy of each SRE
element in their correct positions. Figure
3C shows that mutation
of
the SRE1 element to create a promoter with two consensus SRE2
elements
resulted in a significant (fourfold) increase in basal
activity but
reduced the induction of the promoter by either phenylephrine
or
SRF-VP16. Conversely, mutation of the SRE2 element to create
a promoter
with two copies of the nonconsensus SRE1 element caused
a reduction in
basal activity and SRF-VP16 induction but no significant
effect on
induction by phenylephrine (5.7-fold). Reversal of SRE1
and SRE2
(SRE2

SRE1) had a phenotype similar to the construct
that had two
consensus SRE2 elements (SRE1

SRE2) and was activated
by both
phenylephrine and SRF-VP16 to a lesser extent than was
the wild-type
promoter.
We then constructed promoters that contain well-characterized SREs in
place of the SRE1 element. The c-Fos SRE binds SRF with
high affinity,
while SREP binds SRF with very low affinity (
23).
Again
these promoters were compared to the wild-type molecule.
Figure
3D
shows that the high-affinity cFos SRE in the place of
the SRE1 caused
an increase in basal activity but a significant
reduction in the level
of induction by either phenylephrine or
SRF-VP16. Mutation of SRE1 so
that it was identical to the SREP
element caused reduced basal activity
and reduced induction by
both phenylephrine and SRF-VP16. Finally, we
made a point mutation
in the promoter to change the sequence of the
SRE1 element from
C
TTTAAAAGG to
C
CTTAAAAGG, thus making the endogenous SRE1
element
match a consensus SRF binding sequence (638T

C). Figure
3E shows
that this point mutation also reduced the fold induction by
either
phenylephrine or SRF-VP16 at all of the concentrations of the
two agonists. The mutation also caused a fivefold increase in
basal
activity compared to the wild-type promoter (data not
shown).
Taken together, these data suggest that the inducibility of the
promoter is dependent upon the presence of the low-affinity
SRE1
element at its normal position in the promoter. Artificially
increasing
the likelihood of SRF binding at the SRE1 element by
mutation to a
higher-affinity site increased the basal activity
but reduced
induction. These data suggest that induction of ANF
gene expression is
achieved by starting with a DNA sequence that
confers low basal
activity on the
promoter.
Cooperation between SRE1 and SRE2.
To
further analyze the mechanism of gene regulation via the SRE elements,
we constructed a series of molecules by using the truncated
132
promoter. These molecules were compared to the wild-type
638
promoter. Figure 4A again shows that the
truncated
132 promoter had reduced basal activity and very little
induction by either phenylephrine or SRF-VP16. Therefore, although the
SRE1 element is an important sequence for induction by these stimuli and the
132 promoter has an intact SRE1, other sequences in the
638
promoter are clearly required for induction. Fusion of a single copy of
the SRE2 element to the end of the
132 promoter (
132SRE) slightly
rescued the basal activity, led to significant (but lower than for
wild-type) activation by phenylephrine, and completely rescued the
ability of SRF-VP16 to induce the promoter. Induction of the
132SRE
compared to the
132 promoter construct by SRF-VP16 might be
interpreted as meaning that SRF-VP16 was working via the high-affinity
SRE2 element, i.e., as in the situation with a minimal promoter
containing either SRE1 or SRE2 (Fig. 2D). Such a conclusion might be
supported by the observation that mutation of the SRE2 element in this
plasmid (
132SRE, SRE2k/o) abolished activation by SRF-VP16 (or
phenylephrine). However, this interpretation is incorrect, since we
found that mutation of the SRE1 element in this plasmid (
132SRE,
SRE1k/o) also abolished induction. Thus, a molecule that contains an
intact SRE2 element that efficiently binds SRF is not induced by
SRF-VP16 unless the low-affinity SRE1 element downstream is also
intact. To exclude the possibility that this result was due to
inadvertent mutation of other sequences in the plasmid (e.g., in the
luciferase gene) during the mutagenesis, we performed further
mutagenesis to repair the SRE1 knockout in this plasmid (SRE1 repair).
This repaired molecule regained the ability to be stimulated by
SRF-VP16. We conclude that the SRE2 element cooperates with the SRE1
element but that the SRF-VP16-dependent induction of gene expression is
still highly dependent upon the SRE1 element. The plasmid containing
the SRE2 mutation in the context of the
638 promoter is still
significantly activated by SRF-VP16 (Fig. 3A). We conclude from this
result that other sequences in the
638 promoter may be able to
function like the SRE2 element fused to the end of the
132 promoter,
perhaps to promote SRF-VP16 binding at SRE1.

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FIG. 4.
Cooperation between SRE2 and SRE1. (A) The wild-type
638 promoter or the 132 truncation ( 132), the 132 promoter with
a functional SRE2 element fused to the end ( 132 SRE), 132 mutants
containing mutated SRE2 (SREk/o) or SRE1 (no114), or repairs of the
mutated sequence (no 114 repair) were induced by phenylephrine or
SRF-VP16. All transfections were normalized to the untreated controls
for each promoter. The fold activation for each promoter (from its
unstimulated control) is given by the numbers above the bars. Note that
the 132 promoter is not significantly activated by either
phenylephrine or SRF-VP16, while the promoter with a single copy of the
SRE2 element fused to the end of 132 regains wild-type activation by
SRF-VP16 and partially rescues activation by phenylephrine. Mutation of
either SRE element reduces activation by both stimuli, while remutation
to repair the SRE1 mutant rescues activation by both stimuli. (B) Three
SRE2 elements were fused to the end of a 300-bp DNA fragment from the
Kan gene on the end of the 132 promoter. The SRE1 element was mutated
in this construct, and stimulation was assessed after treatment with
phenylephrine or SRF-VP16. Note that mutation of the SRE1 element
reduces basal promoter activity and induction by both phenylephrine and
SRF-VP16.
|
|
We were concerned that the altered spacing between the elements might
have affected our results. To address this question,
we constructed a
molecule that contained 300 bp of irrelevant
DNA sequence from the
kanamycin gene between the

132 position
and a cloning site and
inserted three copies of the high-affinity
SRE2 element to maximize the
likelihood of SRF binding at this
site. This molecule therefore has
multiple high-affinity SRF-binding
sequences that are correctly spaced
relative to the SRE1 element.
Figure
4B shows that this molecule is
efficiently induced by SRF-VP16
but that induction is compromised by
mutation of the SRE1 element.
Thus, the presence of high-affinity
SRF-binding elements at the
end of the truncated

132 promoter is not
sufficient to cause
efficient induction of gene expression by SRF-VP16
unless the
SRE1 element is
intact.
An intact SRE1 element is required for transcriptional activation
by chimeric transcription factors.
We considered two possible
explanations for the results shown in Fig. 4. First, we considered the
possibility that perhaps SRF-VP16 was only able to bind to either SRE
element in the ANF promoter in a strictly cooperative manner. This
model seemed unlikely since it did not account for our results with
plasmids that contained multiple SRE2 elements and a mutated SRE1
element (Fig. 4B). This model was also difficult to reconcile with the
data presented in Fig. 2D, where a single isolated SRE2 element in a
basal promoter was efficiently activated by SRF-VP16. We therefore
developed a second hypothesis to explain the data: in the absence of
binding at SRE1, transcription induced by factors bound at other sites is abrogated. According to this view, it did not matter whether the
activation site was the SRE2 element or a different DNA element that
was bound to an active transcription factor, there would be minimal
gene expression unless SRE1 was also functional. To test this
hypothesis, we constructed a reporter plasmid with two GAL4 binding
sites fused to the end of the
132 promoter containing an intact or a
mutated SRE1 element. Figure 5A shows
that a GAL4-VP16 molecule was able to efficiently transactivate this
reporter when the SRE1 element was intact but not when it was mutated.
To exclude the possibility of this result being due to another mutation
that arose during the mutagenesis, we repaired the SRE1 element in this
molecule. This plasmid was activated to wild-type levels by GAL4-VP16.
We conclude that in the absence of the intact SRE1 element, stimulation
of the ANF promoter is compromised even when stimulation is achieved by
a strong artificial transcription factor such as GAL4-VP16. Thus, part
of the mechanism of activation of this gene is by regulating
interaction at the SRE1 element, and only when this interaction occurs
can other active transcription factors induce expression.

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FIG. 5.
Activation of transcription by a heterologous
transcription factor requires SRE1 activity. (A) Two consensus
GAL4-binding sequences were fused to the end of the 132 promoter
( 132+GAL4), to a version with the SRE1 element mutated
( 132+GAL4k/o), or to a repaired version of this molecule with a
reconstructed wild-type SRE1 (repair). Cells were transfected with
control vector or a GAL4-VP16 expression plasmid. Note that GAL4-VP16
activates the parental plasmid but that mutation of the SRE1 element in
this molecule reduces activation, while a repaired version of this
molecule has rescued induction. (B) The GAL4-containing promoters were
cotransfected with an expression plasmid encoding GAL4-ATF2, along with
a control plasmid or an activated MEK6 expression plasmid, which
phosphorylates ATF2. MEK6 induces GAL4-ATF2-dependent gene expression
in an SRE1-dependent manner. (C) 132-Luc, GAL4-132-Luc, or the
GAL4-132-Luc molecule with mutated SRE1 ( 132+GAL4k/o) were
transfected with increasing amounts of a MEKK1 expression plasmid with
or without a GAL4-Jun expression plasmid. Note that GAL4-Jun increased
the expression of the GAL4-containing promoters even in the absence of
MEKK1 activity and that this occurs irrespective of the presence or
absence of an intact SRE1 element. Expression of active MEKK1 further
stimulated GAL4-Jun-dependent expression; however, this stimulation was
compromised when the SRE1 element was mutated. (D) Luciferase reporters
as in panel C were transfected with a Raf1:ER expression plasmid and
with or without a GAL4-Elk expression plasmid. Raf activity was
stimulated by adding increasing doses of estradiol to activate
GAL4-Elk. In this case, mutation of the SRE1 element had no effect on
the level of gene expression induced by the active GAL4-Elk protein.
|
|
To create a simple model for how regulated transcription factors at
other sites might have their activity controlled by the
SRE1 element;
we transfected cells with the GAL4-132 promoter
(or the SRE1 mutant)
along with GAL4-binding transcription factors
that were activated by
MAP kinase-dependent phosphorylation. Figure
5B shows that MEK6 can
induce expression from the GAL4-containing
reporter driven by activated
GAL4-ATF2. This activation is inhibited
by the SRE1 mutation,
indicating that the activity of a regulated
transcription factor
binding to an unrelated DNA sequence is dependent
upon the SRE1
element. Figure
5C shows the results obtained when
we compared
activation of the

132 promoter or the GAL4-132 promoter
with an
intact or mutated SRE1 element after stimulation of GAL4-Jun.
Activation of GAL4-Jun was achieved by stimulating the JNK-SAPK
pathway
with active MEKK1. Mutation of SRE1 also inhibited the
ability of
activated GAL4-Jun to induce the promoter. Figure
5D
shows the results
obtained when we activated GAL4-Elk with an
estrogen-induced Raf
molecule (

Raf1:ER) that leads to ERK activation
in transfected cells
(
45,
50). The data shown in Fig.
5C and
D demonstrate two
further aspects of this regulation. First, we
noted that simply
expressing GAL4-Jun with no MEKK1 stimulation
was sufficient to
increase expression from the Gal4-containing
promoters (i.e., GAL4-Jun
has some ability to increase transcription
even without increased JNK
activity). Interestingly, this activity
was not affected by the SRE1
mutation, while the further stimulation
upon MEKK1 transfection (i.e.,
JNK-dependent phosphorylation of
the transcription factor to increase
its activity) was abrogated
by the SRE1 mutation. Thus, transcription
that is stimulated by
JNK-dependent phosphorylation of the
transcription factor requires
the activity at SRE1, while the
transcriptional activity of the
unphosphorylated GAL4-Jun molecule does
not. Conversely, active
and phosphorylated GAL4-Elk does not require
the presence of the
SRE1 element in order to stimulate transcription.
Indeed, the
fold induction of the SRE1 mutant promoter was greater than
that
of the wild-type promoter upon Raf activation. Thus, the
regulation
of the promoter via SRE1 is dependent upon which particular
transcription
factor is bound to the promoter. SRE1 can control the
activity
of VP16-, phosphorylated-ATF2-, and
phosphorylated-Jun-dependent
gene transcription, but it does not
control transcription that
is activated by unphosphorylated Jun or by
phosphorylated
Elk.
 |
DISCUSSION |
Like many inducible genes, the ANF promoter is a target for
diverse stimuli that are likely to work through different signaling pathways. We focused here on two different physiological stimuli: activation of the
-adrenergic receptor by phenylephrine and
electrical pacing to increase the muscle cell contraction rate (to
mimic the increased workload that is a major inducer of hypertrophy in
response to pathological stimuli such as aortic stenosis). The
hypertrophic stimuli that have been tested to date activate various MAP
kinase cascades, but the mechanism of gene activation by these
signaling pathways is still unclear. Our data indicate that a common
mechanism may regulate gene activation by many signaling pathways.
While investigating the targets of transcriptional regulation of the
ANF promoter by p38 and electrical pacing, we found that a nonconsensus
SRE appears to regulate induction by multiple stimuli and active
transcription factors.
p38-dependent activation of the ANF promoter.
The experiments
here showed that electrical-pacing-induced ANF expression is regulated
at least in part through p38-dependent signals. In contrast,
phenylephrine, which works through a Gq-coupled receptor,
was not significantly inhibited when we treated cells with a p38
inhibitor. These data indicate that different kinds of stimuli can use
different signaling mechanisms to stimulate ANF expression. We note
that these data contradict results from other investigators who showed
that phenylephrine-induced ANF expression could be inhibited by the p38
inhibitor (59). We have excluded trivial explanations for
the difference between our results (such as our inhibitor being
inactive). Possibilities could include different culture conditions
used by various laboratories or the various inhibitor incubation
periods, which have been shown to have varied effects on cell
morphology (12). We recently found that, in dense cultures,
phenylephrine causes an increased rate of contraction of the cells that
is associated with p38 activation (24a). Thus, one
explanation for the discrepancy is that a contraction-induced component
of the ANF activation was being detected in the experiments where
phenylephrine-induced expression was affected by the p38 inhibitor.
Irrespective of the reason for these differences, an important point
arising from our work is that, under the conditions that we used here,
phenylephrine-induced ANF expression is not sensitive to a p38
inhibitor, whereas contraction-induced expression is sensitive to this inhibitor.
p38-dependent activation of the gene was partially dependent upon a
CRE-like element that is presumably a target for an activated
transcription factor, such as a member of the ATF-2 family. We
found
that pacing-induced expression but not phenylephrine-induced
expression
was affected by mutation of this sequence. Work from
another group has
shown that pressure overload-induced ANF expression
in transgenic
animals is not affected by mutation of the CRE-like
element
(
54). Pressure overload-induced hypertrophy is dependent
upon G
q signaling (
1); thus, our results are
consistent with
these data in implying that this DNA element is not
required for
G
q-dependent signaling to this
promoter.
In addition to stimulus-specific activator sequences such as the CRE,
two SRE elements (the consensus SRE2 element and the
nonconsensus SRE1
element) in the ANF promoter are important for
regulation of the gene.
As expected, the consensus SRE2 was able
to bind to SRF with higher
affinity than was the nonconsensus
SRE1 element. The difference in
binding was most apparent for
the core SRE elements and occurred both
in vitro and in cells
transfected with a constitutively active form of
SRF (SRF-VP16).
The SRE1 sequence is also similar to a MEF2 binding
site (
36)
and, since MEF2C is known to be a target for
p38-dependent signals
(
20), we tested whether MEF2C could
bind to the SRE1 element.
We have been unable to show any significant
binding of MEF2C to
SRE1 in vitro (data not
shown).
Multiple agonists and transcription factors require SRE1.
Mutation of the SRE1 reduced induction by physiological stimuli such as
phenylephrine and electrical pacing. Surprisingly, mutations in this
element (but not the consensus SRE2 element) also had a major effect on
induction by completely artificial stimuli such as SRF-VP16, GAL4-VP16,
GAL4-ATF2, and GAL4-Jun. Expression of an inducible gene such as ANF is
a product of both the amount of induction and the basal level of
expression. When we tried to separate these two activities we found
that the consensus SRE2 element played a role in the regulation of
basal levels of gene expression but had a minor role in induction.
Importantly, simply making the nonconsensus SRE1 element more closely
match a consensus SRF binding site actually reduced the amount of
induction that was achievable by various stimuli. A similar result was
obtained when we retained both SRE elements but switched their
positions in the promoter. In these cases, the unstimulated basal rate
of expression was increased without a proportional increase in the stimulated samples. These data suggest that an essential aspect of the
regulation of induction of the ANF promoter is achieved by creating a
low basal state, because SRF can bind only inefficiently to the native
SRE1 element. Thus, if stimuli promote SRF binding at this site, we
will see increased gene expression; in this view, SRF is responsible
for the regulation of induction of this promoter, but the mechanism of
induction is via regulation of SRF's ability to interact with its
binding site. Such a model is similar to many inducible transcription
factors, including SRF itself, which can show altered DNA binding to
consensus SREs when it is phosphorylated (31, 39). However,
if hypertrophic stimuli simply increased the binding affinity of SRF
for the SRE1 sequence, thus bringing an active transcription factor to
the promoter, we would expect to see an increase in expression from the
reporters that contain this element in isolation. In the case of SRF at
the c-Fos SRE element, this is clearly what occurs (although perhaps by
several different mechanisms, depending on the stimulus). We do not
observe significant activation of the isolated SRE1 element (or the
SRE2 element) by hypertrophic stimuli. Therefore, we conclude that the
mechanism of gene induction, while dependent upon the SRE1 site, is not
simply achieved by increased recruitment of active SRF at this element.
Our data also do not support a model where SRF that is already bound to
DNA is "activated" to become a more effective transcription factor
by hypertrophic stimuli, e.g., as it may be by Rho-dependent signals
(22).
SRF controls transforming growth factor

(TGF-

)-dependent
expression of the skeletal

-actin gene in cardiac muscle cells
(
29). In this case, the mechanism involves SRF and YY1
binding
to overlapping sites at a consensus SRE. SRF binding promotes
gene expression, while YY1 binding causes repression. While there
are
obvious similarities with our situation, we do not think that
this
mechanism explains the regulation of the ANF promoter. First,
the
flanking region of the nonconsensus SRE1 element, unlike the
consensus
SRE in the skeletal

-actin promoter, does not have
the correct
sequence for YY1 binding. Second, the observations
in the skeletal

-actin promoter are qualitatively different from
our results in that
the isolated skeletal

-actin SRE element
was induced by TGF-

,
whereas hypertrophic stimuli do not themselves
activate SRE1-dependent
gene expression. However, regulation of
basal promoter activity by the
SRE elements does seem to be similar
between ANF and skeletal

-actin. In both cases (see Fig.
3 and
reference
29) increasing the likelihood of SRF binding at the
SRE increases the basal activity of the gene. In this regard,
the
nonconsensus sequence of the SRE1 element in the ANF promoter
could be
the functional equivalent of the overlapping YY1-binding
site in the
skeletal

-actin promoter, which inhibits SRF binding
and is able to
keep the basal level of gene expression
low.
A number of different transcription factor binding sites have been
identified in the ANF promoter (see, for example references
4,
48, and
54) and include the homeodomain protein Csx/NKX2.5
and the zinc finger protein GATA4 (
15,
28). These two
factors
cooperate to regulate tissue specificity of this promoter
(
14,
28). Such cooperativity also occurs between NKX2.5 and
SRF on
the cardiac

-actin promoter (
10). Such results
have led to
the suggestion that the ANF promoter might represent an
enhanceosome-like
structure (
16) similar to the enhanceosome
that controls beta
interferon expression (
9). The beta
interferon enhanceosome
requires proper spacing between cooperative DNA
elements for it
to function. Therefore, our data showing that the
low-affinity
SRE1 element must be positioned at the correct site in the
promoter
to achieve efficient induction by the stimuli that we tested
supports
an enhanceosome-type
model.
Our data also indicate that part of the mechanism of activation of the
ANF promoter is because the SRE1 element is required
to allow
transcription factors that are present at different sites
on the
promoter to induce gene expression. This is most clearly
demonstrated
in the experiments where the ability of active GAL4-binding
transcription factors to induce gene expression can be compromised
by
mutations in the SRE1 element. One mechanism through which
the SRE1
element could be required for induction by factors that
bind to other
sites could be through a cooperative interaction
with other
transcription factors, i.e., in a manner analogous
to the TCF binding
at the c-Fos SRE or NKX2.5-SRF interaction
at the cardiac

-actin
promoter (
10). However, such a model
seems unlikely to
completely explain our data since it is difficult
to imagine how SRF
could assist in the recognition of the GAL4
DNA binding domain to its
binding site. In addition, the idea
that the effects that we observe
are due to an increase in cooperative
DNA binding is difficult to
reconcile with the observation that
not all activated GAL4-binding
transcription factors are affected
by the SRE1 mutation. An alternative
model is that the SRE1 element
acts as an essential mediator of
transcriptional regulation to
allow communication between some active
transcription factors
and the basal transcription apparatus (Fig.
6). Such a model implies
that the diverse
stimuli that induce the ANF promoter will activate
different subsets of
transcription factors that bind to different
sites on the promoter but
that the requirement for SRE1 function
will be common to many of these
transcription factors and thus
many stimuli. If SRE1 is part of an
enhanceosome, this structure
must be required to allow efficient
activation by some, but not
all, transcription factors at other
positions on the promoter.
SRF can interact with components of the
basal transcription machinery
(
60); one possibility,
therefore, is that SRF at the SRE1 sequence
functions as an
"activator bridge" to promote productive interactions
between
activated transcription factors and the basal transcription
machinery.
In this regard it should be noted that while we know
that SRF can bind
to this element, we cannot exclude the possibility
that the effect on
gene expression is achieved through another
protein that is also able
to recognize the SRE1. Our data indicate
that the SRE1 sequence is only
required for some transcription
factors, implying that the underlying
mechanism allows discrimination
between different activation domains.
Further analysis of the
mechanism of regulation through this DNA
element should allow
us to characterize such an activity.

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|
FIG. 6.
Model for transcriptional induction of the ANF promoter
by diverse stimuli. The SRE1 sequence in the ANF promoter could
function as an "activator bridge" to promote productive
interactions between activated transcription factors at other sites and
the basal transcription machinery.
|
|
 |
ACKNOWLEDGMENTS |
We are grateful to the various colleagues who provided plasmids
that were used in this work. We thank Jamie Coombs for help with
several of these experiments and Don Ayer and Steve Prescott for
comments on the manuscript.
This research was supported by NIH grant HL 52010, the Thomas D. Dee
Fellowship in Human Genetics (W.A.H.), and funds from the Huntsman
Cancer Institute and was completed in partial fulfillment of the Ph.D.
degree in Human Genetics (W.A.H.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Huntsman Cancer
Institute, Department of Oncological Sciences, 15 N 2030 E, Rm. 4160b, University of Utah, Salt Lake City, UT 84112. Phone: (801) 585 6332. Fax: (801) 585 3501. E-mail:
andrew.thorburn{at}hci.utah.edu.
 |
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Molecular and Cellular Biology, March 1999, p. 1841-1852, Vol. 19, No. 3
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