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Molecular and Cellular Biology, March 1999, p. 2408-2415, Vol. 19, No. 3
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
The Yeast Ser/Thr Phosphatases Sit4 and Ppz1 Play
Opposite Roles in Regulation of the Cell Cycle
Josep
Clotet,1
Eloi
Garí,2
Martí
Aldea,2 and
Joaquín
Ariño1,*
Departament de Bioquímica i Biologia
Molecular, Facultat de Veterinària, Universitat Autònoma de
Barcelona, 08193 Barcelona,1 and
Departament de Ciencies Mèdiques Bàsiques,
Facultat de Medicina, Universitat de Lleida, 25198 Lleida,2 Spain
Received 23 July 1998/Returned for modification 5 October
1998/Accepted 8 December 1998
 |
ABSTRACT |
Yeast cells overexpressing the Ser/Thr protein phosphatase Ppz1
display a slow-growth phenotype. These cells recover slowly from
-factor or nutrient depletion-induced G1 arrest, showing a considerable delay in bud emergence as well as in the expression of
the G1 cyclins Cln2 and Clb5. Therefore, an excess of the
Ppz1 phosphatase interferes with the normal transition from
G1 to S phase. The growth defect is rescued by
overexpression of the HAL3/SIS2 gene, encoding a negative
regulator of Ppz1. High-copy-number expression of HAL3/SIS2
has been reported to improve cell growth and to increase expression of
G1 cyclins in sit4 phosphatase mutants. We show
here that the described effects of HAL3/SIS2 on
sit4 mutants are fully mediated by the Ppz1
phosphatase. The growth defect caused by overexpression of
PPZ1 is intensified in strains with low G1
cyclin levels (such as bck2
or cln3
mutants), whereas mutation of PPZ1 rescues the synthetic
lethal phenotype of sit4 cln3 mutants. These results reveal
a role for Ppz1 as a regulatory component of the yeast cell cycle,
reinforce the notion that Hal3/Sis2 serves as a negative modulator of
the biological functions of Ppz1, and indicate that the Sit4 and Ppz1
Ser/Thr phosphatases play opposite roles in control of the
G1/S transition.
 |
INTRODUCTION |
Regulation of the eukaryotic cell
cycle is a complex process that involves two major control points:
G1/S, which determines DNA replication; and
G2/M, which regulates entry into mitosis. In the budding
yeast Saccharomyces cerevisiae, commitment to a new round of
cell duplication occurs at a control point called Start. Execution of
Start demands a sufficient level of G1 cyclin/Cdc28 protein
kinase activity and is a requirement for DNA synthesis, bud formation,
and replication of the spindle pole body (9, 23).
The S. cerevisiae gene SIT4 encodes a Ser/Thr
protein phosphatase related to type 2A enzymes (1). The
phenotype of sit4 cells depends on the polymorphic
SSD1 locus. Deletion of SIT4 in the absence of
SSD1 (or in the presence of certain alleles of this gene,
termed ssd1-d) yields inviable cells. On the contrary, sit4
cells are viable in an ssd1-v background
("v" for "viable") although they grow slowly and are enriched
in unbudded cells (36). Several lines of evidence indicate
that Sit4p is required in late G1 for progression into S
phase (36, 37). SIT4 is required for late
G1 expression of SWI4, CLN1, and
CLN2 (and, therefore, necessary for efficient DNA synthesis)
in a pathway that is additive to that of CLN3
(14). Although the link between Sit4 and cyclin activation
is not well understood, the Bck2 gene product has been proposed to
function in a branch of the SIT4 pathway (11). As expected, bck2 mutants require Cln3 in order to complete the
cell cycle (11, 13). It is not clearly established whether
Bck2 acts upstream or downstream Sit4 (11).
SIT4 seems to be required also for bud emergence, because
Sit4-deficient cells provided with CLN2 from a
SIT4-independent promoter can replicate DNA but still are
blocked for bud initiation (14). In this regard, it has been
described that the mutation of sit4 in cells lacking
BEM2, a gene that encodes a GTPase-activating protein for
the Rho1 small GTPase and that has a role in bud emergence and cell
cycle-related cytoskeletal reorganization (6, 20, 39),
results in lethality (10, 20). The function(s) carried out
by the Sit4 protein may have been conserved through evolution, as
Drosophila PPV and human PP6 phosphatases have been proposed as functional homologs of the Sit4 phosphatase (3, 25).
SIS2 encodes a protein with a very acidic COOH-terminal
region that was identified by its ability, when expressed at high copy
number, to dramatically increase the growth rate of sit4 mutants (10). High levels of SIS2 are able to
increase expression of SWI4, CLN1, and
CLN2 in sit4 mutants, although they are unable to
rescue the lethal phenotype of the sit4
mutation in an
ssd1-d background. Deletion of SIS2 caused no
evident growth defect (see below), although the SIS2 gene is
essential in the absence of SIT4 function. It has been
postulated that SIS2 plays a role in a pathway parallel to
that of SIT4 (10).
SIS2 is allelic to HAL3, a gene identified by its
ability to confer tolerance to high levels of sodium and lithium to
yeast cells (15). Cells lacking SIS2/HAL3 are
hypersensitive to sodium and lithium because in these mutants the
expression of the ENA1 gene, encoding the ATPase responsible
for the efficient output of sodium, is not induced at the appropriate
levels in response to salt stress. The expression of ENA1 is
also under the negative control of the Ser/Thr protein phosphatase
Ppz1, a type 1-related phosphatase with a large
NH2-terminal extension (29, 31). In addition of
its role in salt tolerance, the Ppz1 phosphatase probably functions in
conjunction with the protein kinase C (PKC)-activated mitogen-activated
protein (MAP) kinase pathway (21, 30), which is involved in
the proper construction of the cell wall (see references 5 and 22 for reviews).
We observed some time ago that strong overexpression of PPZ1
(driven by the GAL1 promoter from a multicopy plasmid)
dramatically blocked cell growth in a wild-type background
(7) and that high-copy-number expression of PPZ1
from its own promoter yields cells that display a slow-growth phenotype
with increased number of unbudded cells (8). Recently we
obtained genetic and biochemical evidence that Hal3/Sis2 can act as a
negative regulatory subunit of Ppz1 (8). The observation
that an excess of Ppz1 could alter cell growth, together with the
existence of a functional link between HAL3/SIS2 and
SIT4, prompted us to consider the possibility that the Ppz1
phosphatase is involved in cell cycle regulation. In this report, we
present evidence suggesting that Ppz1 plays a role in the
G1/S transition that is opposed to some of the functions of
the Sit4 Ser/Thr phosphatase.
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MATERIALS AND METHODS |
Growth of Escherichia coli and yeast strains.
E. coli NM522 or DH5
was used as a host for DNA cloning.
Bacterial cells were grown at 37°C in LB medium containing ampicillin (50 µg/ml), when needed, for plasmid selection. Yeast cells were grown at 28°C in YPD medium or, when indicated, in complete minimal (CM) synthetic medium (35). Unless otherwise stated, yeast
strains generated in this work (Table 1)
derive from S. cerevisiae JA-100 (MATa
PPZ1 PPZ2 HAL3 ura 3-52 leu2-3,112 trp1-1 his4
can-1r).
Recombinant DNA techniques, gene disruptions, and plasmids.
E. coli and S. cerevisiae cells were
transformed by using standard techniques as previously described
(8). Restriction reactions, DNA ligations, and other
standard recombinant DNA techniques were carried out as described
elsewhere (33).
Gene disruptions were performed by the one-step technique
(32). The PPZ1 disruption was as described
elsewhere (29), and HAL3 was interrupted with the
LEU2 marker as described in reference 15.
The PPZ2 gene was disrupted by replacing a 0.95-kbp
HpaI-XhoI fragment containing about 100 bp of 5'
untranslated region plus most of the NH2-terminal coding
region by the 0.9-kbp SalI-SmaI fragment
containing the TRP1 gene, obtained from vector YDp-W (4). The SIT4 gene was interrupted with the
TRP1 marker as described in reference 28.
Alternatively, SIT4 was disrupted with the kanamycin gene as
follows. The kanMX4 module containing the kanamycin
resistance gene was recovered from plasmid pFA6a-kanMX4 (38) by digestion with SmaI and SpeI
and was cloned into plasmid pUC19, previously digested with
SmaI and XbaI. The insert was recovered by
digestion with BglII and SphI and cloned into
these same sites present in the coding region of the SIT4
gene in plasmid pJA-1 (28). The construct was linearized by
digestion with BamHI, and the 2.75-kbp fragment was used for
integration at the SIT4 locus. Positive clones were selected
by resistance to geneticin. The BEM2 gene was also disrupted
with the kanMX module as follows. Plasmid pCT3-H2, which
contains a 9.3-kbp insert including the entire BEM2 gene
(6), was digested with EcoRI and PstI,
and the 4.3-kbp fragment was recovered and ligated into the same sites of plasmid pUC19, to give pUC19-BEM2(4.3). Plasmid
pFA6a-kanMX4 was linearized by EcoRI digestion,
blunt ended with the Klenow enzyme, and then digested with
BglII. The released fragment, containing the
kanMX4 module, was ligated into pUC19-BEM2(4.3). previously digested with BamHI and HincII. The resulting
construct was then digested with BglII and EcoRI
(present in the polylinker of pUC19), and the 2.95-kbp fragment was
used for yeast transformation. For disruption of CLN3, a
2.1-kbp fragment (XhoI-HpaI) containing the whole
open reading frame was replaced by the LEU2 gene. All disruptions were verified by PCR.
The construction of plasmids YEplac181-
PPZ1,
YCplac111-
PPZ1, and pYES2-
PPZ1 was
previously described (
7). Plasmid YEplac195-
PPZ1 was made by recovering the insert from YEplac181-
PPZ1
by digestion
with
BamHI and
HindIII and
ligating it into the same sites of
plasmid YEplac195, which carries a
URA3 marker (
17). Construction
of plasmid
YEp351-
HAL3 was described previously (
15).
Plasmid
YEp-
PPZ2 corresponds to the entire genomic clone
described in
reference
21.
Other methods.
Yeast cells were arrested at G1
phase by treatment with
-factor or by nitrogen deprivation. For
determination of the budding index after release from
-factor
arrest, cultures (5 ml) were grown to an optical density at 660 nm
(OD660) of 0.3 to 0.4; then
-factor (Sigma) was added to
a final concentration of 20 µg/ml, and growth resumed for 2.5 to
3 h. Cells were recovered by centrifugation, washed in fresh
medium, and resuspended in 1/10 of the original volume. Samples were
taken at different times, and at least 200 to 300 cells were counted
for each time point. Alternatively, for flow cytometry analysis or RNA
preparation, initial cultures (optical density of 0.4 to 0.6) were
filtered and resuspended in prewarmed medium containing the pheromone
(10 µg/ml). After 2.5 to 3 h, the cultures were filtered and
resuspended in prewarmed fresh medium to give an optical density of 0.5 to 1. Samples were taken at different times and processed for flow
cytometry and RNA preparation as described in reference
16. Nitrogen deprivation experiments were carried
out essentially as described in reference 16. Yeast
cells were arrested at the G2/M transition as follows. Cultures (5 ml) were grown on CM medium lacking uracil at an optical density of 0.1 to 0.2, nocodazole (10 µg/ml) was added, and growth resumed for 3 h. Cell were washed and resuspended in fresh medium, and samples were taken every 15 min and processed for microscopic observation and flow cytometry.
 |
RESULTS |
Overexpression of PPZ1 causes a delay in the
G1/S transition.
We have reported that yeast strains
overexpressing PPZ1 from the GAL1 promoter show a
severe growth defect (7). Although less pronounced, this
defect is evident even when PPZ1 is expressed from its own
promoter from a multicopy plasmid (Fig.
1A). Early-exponential-phase cultures
(OD660 of 0.4 to 0.5) of cells overexpressing
PPZ1 showed a marked increase in small budded cells compared
with cells with normal levels of the phosphatase (61% versus 39%).
Furthermore, flow cytometry analysis of these samples (Fig. 1A, inset)
indicated that the culture of cells overexpressing PPZ1 was
enriched in 1C cells, indicative of an specific delay in G1
phase. In contrast, high-copy-number expression of PPZ2 did
not affect cell growth (Fig. 1A). A noteworthy observation was that the
Ppz1-induced growth defect was completely rescued by high-copy-number
expression of the gene HAL3/SIS2, which encodes a protein
recently identified in our laboratory as a negative regulator of Ppz1
in salt tolerance. High-copy-number expression of PPZ1
results in a temperature-sensitive phenotype, since growth of the cells
at 37°C is rather slow, with increased number of small budded cells
and a higher fraction of 1C cells (not shown). This phenotype is also
rescued by increased dosage of HAL3. Overexpression of
HAL3 from a high-copy-number plasmid was also able to
ameliorate the very poor growth of cells strongly overexpressing
PPZ1 from the GAL1 promoter (Fig. 1B).

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FIG. 1.
Overexpression of the Ser/Thr phosphatase Ppz1 produces
a phenotype of slow growth that is rescued by overexpression of Hal3.
(A) Wild-type strain JA-100 was transformed with plasmid YEplac195
( ), plasmid YEplac195-PPZ1 ( ), plasmid
YEp-PPZ2 ( ), or plasmids YEplac195-PPZ1 and
YEp351-HAL3 ( ). Positive clones were grown overnight in
CM medium lacking uracil, diluted to an OD660 of 0.15, and
then grown for the indicated times in the same medium. Data are
means ± SEM of three experiments. The inset shows the flow
cytometry analysis of cells carrying the empty plasmid YEplac195 (upper
profile) or plasmid YEplac195-PPZ1 (lower profile). Samples
were taken at equivalent optical densities to avoid interferences due
to the availability of nutrients. (B) Wild-type JA-100 cells were
transformed with plasmid pYES2 ( ), plasmid pYES2-PPZ1
( ), or plasmid pYES2-PPZ1 plus plasmid
YEp351-HAL3 ( ). Cells were grown overnight on CM medium
lacking uracil in the presence of 2% glucose; then an aliquot was
inoculated (to achieve a starting optical density of 0.01) in minimal
medium lacking uracil and containing 2% galactose. Growth was resumed,
and samples were taken at the indicated times. Data are means ± SEM of four experiments.
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To characterize the nature of the observed growth defect, we
synchronized cells in G
1 by incubation with

-factor and
then
released the cells from the pheromone-induced arrest.
As shown
in Fig.
2A,

-factor
arrest of wild-type cells results in a very
low percentage of budded
cells that increases rapidly when the
pheromone is removed. However,
cells overexpressing
PPZ1 show
a very slow recovery from
G
1 arrest, as deduced by the very low
budding index of the
cultures. A similar behavior was observed
when these cells were
arrested in G
1 by nitrogen starvation instead
of pheromone
treatment (not shown). The delay of
PPZ1-overexpressing
cells in recovering from

-factor-induced G
1 arrest is
also evident
when DNA contents are monitored by flow cytometry (Fig.
2B). Therefore,
high levels of the Ppz1 phosphatase seem to interfere
with two
essential processes in the G
1-to-S transition:
budding initiation
and DNA synthesis. Evaluation of the levels of two
different G
1 cyclins by Northern blot analysis confirmed
this observation (Fig.
2C): the expression of both
CLN2 and
CLB5 is delayed in
PPZ1-overexpressing
cells, and
the levels attained are also lower than those of cells
with normal
levels of the phosphatase. On the contrary, an excess
of Ppz1 seems
without effect at the G
2/M cell cycle transition
point because after nocodazole treatment, control cells and
cells
overexpressing
PPZ1 resumed cell cycle in similar
fashions (not
shown). Taken together, these results indicate that high
levels
of Ppz1p result in a defect in the G
1/S transition.

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FIG. 2.
Overexpression of Ppz1 causes a delay in
G1/S transition and G1 cyclin expression.
(A) JA-100 cells carrying plasmid YEplac181 ( ) or
YEplac181-PPZ1 ( ) were arrested in G1
phase by incubation with -factor (20 µg/ml) for 3 h. Cells
were collected, washed, and resuspended in fresh CM medium lacking
leucine. Samples were taken at the indicated times, and the budding
index of the culture was determined by microscopic observation. Data
are means ± SEM of four experiments. (B) Control cells (with
plasmid YEplac181; left) and cells overexpressing Ppz1 (with plasmid
YEplac181-PPZ1; right) were grown as indicated, and samples
were taken for DNA content determination by flow cytometry. (C) Cells
were arrested as indicated. After release, samples of cells were taken
at the indicated times and total RNA was isolated. Equivalent amounts
(5 µg) of total RNA were run in formaldehyde-agarose gels,
transferred to membranes, and hybridized with the indicated DNA probes.
Hybridization with the ACT1 probe and the ethidium bromide
staining of rRNA are shown for comparison.
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Lack of PPZ1 improves growth of a sit4
mutant.
We have shown that high-copy-number expression of
HAL3/SIS2 rescues the growth defect induced by
overexpression of PPZ1. Hal3/Sis2 is a protein that
interacts with Ppz1 and negatively regulates a number of functions of
this phosphatase. On the other hand, HAL3/SIS2 was
identified as a gene that in high copy number could improve the growth
of sit4 mutants. Therefore, we considered the possibility
that the effects described for HAL3/SIS2 in Sit4-deficient cells result from attenuation of the function of the Ppz1 phosphatase. To test this hypothesis, we constructed cells (with an
ssd1-v background) lacking PPZ1, SIT4,
or both genes. As shown in Fig. 3,
sit4 cells are viable but display a slow-growth phenotype
that is clearly ameliorated by disruption of PPZ1.
Furthermore, the potency of this effect is roughly the same as that
obtained by overexpressing HAL3/SIS2, and the two effects
are not additive. Interestingly, deletion of PPZ2 resulted
only in a slight improvement of growth of sit4 mutants,
indicating that the lack of Ppz2 was clearly less effective than the
absence of Ppz1 (not shown). The positive effect of the deletion of
PPZ1 on the growth rate of sit4 mutants has also
been verified in two additional strains (DBY746 and UTL-7A), in which
the deletion of SIT4 is not lethal (data not shown). These
results are compatible with the notion that the described effect of the
overexpression of HAL3/SIS2 on the growth of sit4
mutants is mediated by Ppz1.

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FIG. 3.
Deletion of PPZ1 mimics the effect of
overexpression of HAL3 in sit4 cells. The
following strains were streaked on CM plates lacking leucine: wild-type
JA-100, JA-110 (PPZ1 sit4), JA-110 containing plasmid
YEp351-HAL3, JA-112 (ppz1 sit4), JA-112
with plasmid YEp351-HAL3, and JA-112 with plasmid
YCp111-PPZ1. Strains without an specific plasmid were
transformed with YEplac181 to allow growth in the
selective medium. Growth was scored after 3 days.
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Deletion of
HAL3/SIS2 has virtually no effect on cell growth
under normal conditions. However, it has been documented that
the
HAL3/SIS2 gene is essential for viability in the absence of
SIT4, since
hal3/sis2 and
sit4
deletions have been reported to
be synthetically lethal
(
10). We considered that if the effect
of Hal3/Sis2 is
mediated by Ppz1, the deletion of
PPZ1 in a
hal3/sis2 sit4 background should yield viable cells,
with a growth phenotype
resembling to that of
sit4 cells. To test this possibility, we
crossed strain
JA-115 (
MATa ppz1::URA3
hal3::LEU2) with
strain JA-111 (
MAT
sit4::TRP1), to create the diploid strain
JA-120, which was
induced to sporulate. In 10 of 26 tetrads analyzed,
only three spores
could germinate or grow, and the genotype deduced
for the nonviable
spores corresponded to the combination of the
sit4 and
hal3 mutations, thus confirming the synthetic lethality
of
these mutations. However, in 11 tetrads we recovered the combination
of
markers corresponding to the triple mutation
sit4 ppz1 hal3,
and these cells had a growth rate similar to that of
sit4
ppz1 double mutants (not shown). Therefore, deletion of
ppz1 rescues
the lethal phenotype of the
sit4
hal3 mutation. This result is
in agreement with the notion that
the function(s) of Hal3 necessary
for viability in the absence of
SIT4 is mediated by
Ppz1.
It is known that the phenotype of
sit4 deletants depends on
the unlinked polymorphic
SSD1 locus (
36). Thus,
in an
ssd1-d2 strain (as in W303 derivatives) or in an
ssd1
strain, the deletion
of
SIT4 is lethal,
and it has been reported that the overexpression
of
HAL3/SIS2 does not rescue this lethal phenotype.
Consequently,
our hypothesis was that if the effects of Hal3/Sis2
are mediated
by Ppz1, the deletion of this phosphatase in an
ssd1-d background
would not rescue the lethality caused by
disruption of
SIT4. To
test this, diploid W303 cells
heterozygous for the
sit4 and
ppz1 deletions were
constructed (strain JA-500), and their sporulation
was induced.
Consistent with our hypothesis, after analysis of
36 tetrads, we failed
to obtain cells carrying the combination
of the
sit4 and
ppz1 deletions.
Deletion of PPZ1 accelerates the slow recovery from
-factor G1 arrest of sit4 cells.
Cells
lacking functional Sit4 present a expanded G1 phase and
show a delayed entry in cell cycle after
-factor G1
arrest. This situation can be monitored by determining the budding
index of the cultures after removal of the pheromone. As shown in Fig. 4A, deletion of PPZ1
accelerates the slow recovery from the
-factor G1 arrest
that is characteristic of sit4 mutants, and this effect is
completely suppressed by expression of PPZ1 from
a low-copy-number, centromeric plasmid. Interestingly, the
enhanced recovery induced by deletion of PPZ1 is
virtually identical in potency to that the obtained by overexpression
of HAL3/SIS2, and the two effects are not additive. It is
worth noting that neither the deletion of PPZ1 nor the
overexpression of HAL3/SIS2 is able to fully restore the
wild-type phenotype.

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FIG. 4.
Deletion of PPZ1 accelerates the entry into
G1/S transition of a sit4 mutant. (A) Strains
JA-100 (wild type; ), JA-110 (sit4; ), JA-110
containing plasmid YEp351-HAL3 ( ), JA-112 (ppz1
sit4; ), JA-112 containing plasmid YEp351-HAL3
( ), and JA-112 containing plasmid YCplac111-PPZ1
( ) were
arrested in G1 phase by incubation with -factor and
released from arrest as indicated. Cells were taken at the indicated
times, and the budding index was determined by microscopic counting.
Data are means ± SEM of six experiments. (B) Analysis of DNA
content of wild-type (wt), sit4 (strain JA-110), and
sit4 ppz1 (strain A-112) cells by flow cytometry. Cells were
arrested as described above, and samples were taken at different times
after release from -factor arrest. (C) The indicated strains were
released form -factor arrest, and samples were taken at various
times. Total RNA was prepared, electrophoresed, transferred to
membranes, and hybridized with the indicated probes. Ethidium bromide
staining of rRNAs is shown for comparison.
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We monitored the delay of
sit4 mutants in reaching S phase
by flow cytometry (Fig.
4B) and observed that deletion of
PPZ1 accelerates the entry of
sit4 cells in S
phase. When the levels
of G
1 cyclins were monitored (Fig.
4C), we observed that lack
of Ppz1 in a
sit4 background
resulted in an earlier expression
of
CLN2 and
CLB5. In both cases, however, the mutation of
PPZ1 alleviates the
sit4 defect but does not
fully restore the wild-type
behavior. These results suggest that the
Ppz1 phosphatase may
counteract some but not all of the effects of the
Sit4 phosphatase
on the cell
cycle.
Increased expression of PPZ1 results in a strong growth
defect in strains with low G1 cyclin levels.
Bck2 has
been postulated to be involved in the SIT4
pathway for the activation of G1 cyclin expression. To
better understand the relationships between BCK2,
SIT4, and PPZ1, we tested the effect of increased
PPZ1 function in the absence of BCK2. We observed that whereas lack of Hal3 does not significantly alter cell
growth in an otherwise wild-type background, deletion of
HAL3 results in poor growth in the absence of
BCK2 (not shown). This effect on cell growth is consistent
with an increased Ppz1 function. To directly test this hypothesis, we
transformed bck2 cells with a multicopy plasmid containing
the PPZ1 gene. As observed in Fig. 5A, overexpression of PPZ1
drastically reduces cell growth of bck2 cells.

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FIG. 5.
Ppz1 function is not mediated by BCK2 or
CLN3. (A) Strains JA-100 (wild type [wt]), CML211
(cln3 ), and JA-170 (bck2 ) were transformed
with plasmid YEplac195 (upper half) or YEplac195-PPZ1 (lower
half). Positive clones were streaked on CM plates lacking uracil and
grown at 28°C for 2 days. (B) Strain JA-114 (MAT sit4
pz1 ) was crossed with strain CML211 (MATa
cln3 ). The resulting diploid strain, JA-190, was
sporulated, and ppz1 sit4 cln3 triple (but not sit4
cln3 double) mutants were recovered. Growth of the triple mutant
was compared with that of cln3 cells (which grow nearly like
a wild-type strain), sit4 cells, and sit ppz4
cells by streaking the cultures in YPD plates and incubating them at
28°C for 2 days.
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Both
SIT4 and
BCK2 have been integrated in a
pathway that is additive to
CLN3 function for G
1
cyclin expression. We then considered
the possibility that Ppz1 exerts
its effect on the G
1/S transition
by affecting
CLN3 function. To test this, we transformed a
cln3
strain with plasmid YEplac195-
PPZ1. As
shown in Fig.
5A, high-copy-number
expression of
PPZ1
in the absence of
CLN3 results in an extremely
poor growth
(resembling to that obtained by overexpression of
PPZ1 in a
bck2 mutant). This finding suggests that the effect
of the
phosphatase is not mediated by Cln3 and that, in fact,
the absence of
CLN3 strongly aggravates the growth defect resulting
from
high levels of
Ppz1.
Mutation of PPZ1 rescues the lethal phenotype of the
sit4 cln3 mutation.
It has been postulated
(14) that Sit4 and Cln3 provide parallel pathways for the
accumulation of CLN1, CLN2, and HCS26
mRNAs. As a consequence, sit4
cln3
cells are virtually
inviable. We postulated that if the role of Ppz1 is opposed to some
functions regulated by Sit4 and Cln3 (and is not mediated by these
components), lack of PPZ1 might allow growth of cells
lacking both Sit4 and Cln3. This was tested by crossing strain JA-114
(MAT
sit4
ppz1
) with strain CML211
(MATa cln3
). The resulting diploid strain
(JA-190) was then sporulated, and 22 tetrads were dissected. The
results confirmed the inviability of a sit4
cln3
mutant. However, nine spores gave rise to colonies that showed the
combination of markers corresponding to the triple sit4
ppz1
cln3
mutation. Growth of this strain in comparison with
that of sit4 and sit4 ppz1 strains (Fig. 5B)
supports the notion that Cln3 does not mediate the function of Ppz1.
Analysis of the genetic interactions between PPZ1,
BEM2, and SIT4.
In addition to a defect in
G1 cyclin expression, lack of sit4 results in a
defect in bud formation (14). It has been described that
null mutations in the SIT4 and BEM2 genes are
synthetically lethal. To explore the possibility that deletion of
PPZ1 can rescue this lethal phenotype, we used the diploid
strain JA-121, which is heterozygotic for the ppz1,
bem2, and sit4 mutations, and induced its
sporulation. To our surprise, we were able to recover viable double
sit4 bem2 mutants, although these cells grew very slowly, even in comparison with sit4 mutants (Fig.
6A). This could be explained by the fact
that the defect of the bem2 mutation in our genetic
background is relatively mild. It has been previously reported that the
genetic background (in particular the presence of specific alleles of
the gene SSD1) is a major determinant for the severity of
the bem2 phenotype (20). As can be observed, deletion of PPZ1 improves the growth of sit4 bem2
cells. However, these cells are still defective in growth compared to
sit4 ppz1 mutants.

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|
FIG. 6.
Genetic interactions between the sit4,
bem2, and ppz1 mutations. (A) Strains JA-100
(wild type [wt]), JA-110 (sit4), JA-130 (bem2),
JA-140 (sit4 bem2), JA-112 (sit4 ppz1), and
JA-151 (sit4 ppz1 bem2) were grown at 28°C on YPD plates.
Growth was scored after 2 days. (B) Strains JA-100 (wild type [wt]),
JA-130 (bem2), JA-131 (ppz1 bem2), JA-150
(bem2 hal3), and JA-152 (ppz1 bem2 hal3) were
streaked on YPD plates and grown at 37°C for 2 days.
|
|
To test a possible genetic interaction between
BEM2 and
PPZ1, we grew cells at 37°C (to aggravate the relatively
mild
bem2 phenotype observed in our genetic background). As
can be observed
in Fig.
6B, deletion of
PPZ1 does not rescue
the growth defect
of
bem2 mutants (or the characteristic
morphology of these cells
[not shown]). However, a double
bem2
hal3 mutant shows a growth
defect stronger than that of
bem2 cells, suggesting an additive
effect of the two
mutations. The notion that the effect of lack
of Hal3 on a
bem2 background is the result of an increased Ppz1
functional activity is confirmed by the observation that the additional
growth defect is abolished by mutation of the
PPZ1 gene.
 |
DISCUSSION |
In this report, we present evidence that Ppz1, a Ser/Thr
phosphatase initially identified as involved in the maintenance of cell
integrity and the tolerance to sodium cations (21, 30, 31),
is also a regulatory component of the G1/S transition in the yeast cell cycle. Preliminary observations suggested that Ppz1 may
be related to certain cell growth processes, since overexpression of
the gene caused a dramatic growth defect (7). We show here that an excess of Ppz1 results in delayed bud emergence,
CLN2 and CLB5 cyclin expression, and DNA
synthesis, all characteristics of a delay in the G1/S
transition. sit4 mutants also present a delayed
G1/S transition, as a result of a defect in G1
cyclin expression and bud emergence (14, 36, 37) that can be
relieved by overexpression of SIS2/HAL3 (10). A
key point that suggested a possible link between the functions of Ppz1
and Sit4 was our recent finding that Hal3/Sis2 can act as a negative
regulatory subunit of Ppz1 (8). This led us to suspect that
the observed growth defect attributed to an excess of Ppz1 may be due
to a negative effect of the phosphatase on the cell cycle and to
postulate that the rescue of the sit4 phenotype by high
levels of Hal3 may be a consequence of a Hal3-mediated attenuation of
Ppz1 function(s). The fact that an increased HAL3 dosage is
able to cure the growth defect due to overexpression of PPZ1
confirmed the negative role of Hal3 on the cell cycle-related
function(s) of Ppz1. Therefore, the emerging scenario is that Hal3 is a
negative regulatory component of all known Ppz1 functions, since it
appears to regulate the biological activity of Ppz1 with respect to
sodium tolerance, cell integrity (in connection with the PKC-activated
MAP kinase pathway), and cell cycle (references 8
and 31 and this work).
Furthermore, we demonstrate in different ways that Ppz1 plays a role in
the G1/S transition that is opposed to some of the functions attributed to Sit4 and that the previously described effect
of high-copy-number expression of HAL3 (10) on
sit4 mutants can be explained through the inactivation of
Ppz1. This role in cell cycle might be very specific for Ppz1, because
we have observed that high-copy-number expression of PPZ2, a
phosphatase highly related to Ppz1 (19, 21), does not affect
cell growth and that the deletion of PPZ2 is fairly
ineffective in curing the sit4 cell growth defect. This
finding suggests that Ppz1 and Ppz2 are not functionally identical and
that the role of Ppz1 in the cell cycle cannot be fulfilled by Ppz2.
This situation is reminiscent of the virtual absence of a salt
tolerance phenotype in a ppz2 deletant, compared with the
hypertolerance of the ppz1 mutant (8, 31).
Two independent pathways have been proposed for the activation of
G1 cyclin transcription (Fig.
7), one involving Sit4 and Bck2 and the
other involving Cln3 (11, 13). The gene BCK2 is
required for CLN1 and CLN2 gene expression,
although its absence has no evident phenotypic effect in an otherwise
wild-type background (11, 13, 21) and does not aggravate the
slow-growth sit4 phenotype (11). We have observed
that deletion of HAL3 (as well as high-copy-number
expression of PPZ1) in a bck2 background yields cells that, while displaying a slow-growth phenotype, are viable. This
is in contrast with the lethal phenotype (confirmed in this report)
ascribed to the hal3 sit4 mutation. Therefore, the weaker phenotype of the hal3 bck2 mutant suggest that Bck2
functions downstream Sit4, in a branch on the Sit4 pathway for
CLN activation (11). sit4 cln3 double
mutants have been reported to be inviable, most probably as a result of
a defect in the activation in cyclin transcription (14). Our
observations that lack of PPZ1 allows growth of a
sit4
cln3
strain, in combination with the results described above, strongly suggest that Ppz1 is a novel component of a
pathway that negatively regulates G1 cyclin transcription. Similarly to the lack of CLN3 or BCK2, the effect
of the absence of this component is barely detectable in otherwise
wild-type cells, but it is readily observed in cells lacking additional positive components of the cyclin-activating pathway. In contrast, the
excess of Ppz1 function can be easily detected in wild-type cells,
although the effect is stronger in cells deficient in some components
of these activating pathways (such as Bck2 or Cln3).

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|
FIG. 7.
Schematic diagram of the role of the Ser/Thr phosphatase
Ppz1 in cell cycle regulation. See Discussion for details.
|
|
The growth defect of the sit4 mutants cannot be fully
attributed to their defective G1 cyclin expression. In
these mutants, the expression of CLN2 from a
SIT4-independent promoter cannot restore growth because
although it allows DNA replication to progress, cells are still blocked
for bud initiation (10, 14). Therefore, the lack of Sit4
negatively affects other processes, such as bud initiation, at late
G1 phase. These processes would be also stimulated by
high-copy-number expression of HAL3/SIS2 (10)
and, therefore, negatively regulated by Ppz1. Our data suggest that the
effect of lack of Ppz1 in alleviating the budding defect of
sit4 mutants is even more dramatic that the observed
restoration of cyclin levels, indicating that Ppz1 must have a role in
the budding process. Bem2 has been recognized as an important
constituent of the regulatory mechanisms for polarized cell growth and
bud emergence (6, 20, 39), and it has been shown to display
genetic interactions with SIT4, since sit4 and
bem2 mutations have been described as synthetically lethal
(10, 20). We observe that the deletion of PPZ1 is
unable to rescue the morphological defects and the slow growth at
37°C of bem2 mutants, whereas the deletion of
HAL3 (which would result in increased Ppz1 function)
aggravates the growth defect of bem2 cells. All of these
results suggest that the possible role of Ppz1 in bud emergence is not
mediated by Bem2. Our working model for Ppz1 function in cell cycle is
delineated in Fig. 7. Ppz1 should negatively regulate G1
cyclin expression through a mechanism that would not be mediated by
Sit4, Bck2, or Cln3. In addition, Ppz1 should negatively regulate
certain processes that affect proper budding. Although the precise
nature of these processes remains to be elucidated, our data suggest that they are probably unrelated to those mediated by Bem2. In any
case, the regulatory effect of Ppz1 on the cell cycle seems to be
restricted to the G1/S transition, and it is opposed to the
function(s) of Sit4. Therefore, it would be interesting to identify
biological targets for both Sit4 and Ppz1 phosphatases. We have
observed that the bidimensional electrophoretic pattern of proteins in
sit4 mutants markedly differs from that of wild-type cells.
However, lack of Ppz1 barely alters the protein pattern, and the
ppz1 sit4 double mutant display a pattern very similar to
that of sit4 cells (27). This finding suggest
that the lack of Ppz1 might allow restoration of growth in
sit4 cells by affecting very specific biological targets.
An aspect most suggestive of the involvement of Ppz1 in the cell cycle
is that this phosphatase has been previously shown to participate in
other important cell functions, such as the maintenance of cell
integrity (21, 30), in connection with the PKC-activated
SLT2/MPK1 pathway involved in bud emergence and cell surface
growth, and the regulation of sodium tolerance (31). It has
been shown that the pathway leading to the activation of the Slt2/Mpk1
MAP kinase is activated in turn at the G1/S transition (18, 26). On the other hand, it seems reasonable to
postulate that the maintenance of proper intracellular ion
concentrations may be required for the cell to take the decision to
progress in the cell cycle, as it has been shown that many
environmental stresses cause a delay in cell cycle progression
(24). It appears that Ppz1p may be a component of a pathway
that would integrate different stimuli relevant for cell cycle
progression. It is worth stressing that functional homologs of Sit4
have been found in Drosophila and humans (25, 3),
suggesting a strongly conserved function. Although Ppz phosphatases
have been found so far only in S. cerevisiae (19,
21, 29), Schizosaccharomyces pombe (2), and
Neurospora crassa (12), the recent discovery of Hal3 homologs in plants (34) and the evidence from the data banks that proteins similar to Hal3 can be found in animals suggest that the existence of Ppz phosphatase-mediated regulatory pathways may
not be restricted to fungi.
 |
ACKNOWLEDGMENTS |
We thank M. Zaguirre and A. Vilalta for skillful technical help,
V. J. Cid and M. Sánchez for the BEM2 gene, R. Serrano for the HAL3 gene, and D. L. Levin for the
PPZ2 gene. We gratefully acknowledge the advice of I. López Calderón regarding the genetic analysis of some
mutants, as well as the support of E. Simón and J. Torres at some
phases of the work.
This work was supported by grants PB95-0663 and PB94-0511 from the
Dirección General de Investigación Científica y
Técnica (Ministry of Education, Spain), to J.A. and M.A.,
respectively, and SGR97-127 from the Comissió Interdepartamental
de Ciència i Tecnologia (Generalitat de Catalunya) to J.A.
E.G. is recipient of a postdoctoral research contract from the Ministry
of Education, Spain.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Dept.
Bioquímica i Biologia Molecular, Fac. Veterinària,
Universidad Autònoma de Barcelona, Bellaterra 08193, Barcelona,
Spain. Phone: 34-93-5812182. Fax: 34-93-5812006. E-mail:
J.Arino{at}CC.UAB.ES.
 |
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