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Molecular and Cellular Biology, May 1999, p. 3457-3465, Vol. 19, No. 5
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Developmentally Regulated Telomerase Activity Is Correlated
with Chromosomal Healing during Chromatin Diminution in
Ascaris suum
Laurent
Magnenat,
Heinz
Tobler, and
Fritz
Müller*
Institute of Zoology, University of Fribourg,
CH-1700 Fribourg, Switzerland
Received 16 October 1998/Returned for modification 24 November
1998/Accepted 19 February 1999
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ABSTRACT |
Telomerase is the ribonucleoprotein complex responsible for the
maintenance of the physical ends, or telomeres, of most eukaryotic chromosomes. In this study, telomerase activity has been
identified in cell extracts from the nematode Ascaris suum.
This parasitic nematode is particularly suited as a model system for
the study of telomerase, because it shows the phenomenon of
chromatin diminution, consisting of developmentally programmed
chromosomal breakage, DNA elimination, and new telomere formation. In
vitro, the A. suum telomerase is capable of
efficiently recognizing and elongating nontelomeric primers with
nematode-specific telomere repeats by using limited homology at
the 3' end of the DNA to anneal with the putative telomerase
RNA template. The activity of this enzyme is developmentally regulated,
and it correlates temporally with the phenomenon of chromatin
diminution. It is up-regulated during the first two rounds of embryonic
cell divisions, to reach a peak in 4-cell-stage embryos, when three
presomatic blastomeres prepare for chromatin diminution. The activity
remains high until the beginning of gastrulation, when the last of the
presomatic cells undergoes chromatin diminution, and then constantly
decreases during further development. In summary, our data
strongly argue for a role of this enzyme in chromosome healing
during the process of chromatin diminution.
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INTRODUCTION |
Telomeres are specialized
DNA-protein complexes at the ends of linear eukaryotic chromosomes that
are essential for the maintenance of genome integrity. They protect the
chromosome ends from fusion with each other and from degradation by
exonucleases, prevent the activation of cell cycle checkpoints, and
counter the terminal DNA loss that occurs when linear DNA is replicated
by conventional DNA polymerases (7, 41, 49, 55, 62, 70).
Synthesis and maintenance of telomeric DNA is primarily mediated by
telomerase, a specialized RNA-dependent DNA polymerase.
Telomerase is a ribonucleoprotein complex: it contains a reverse
transcriptase catalytic subunit and associated protein subunits,
as well as an intrinsic RNA molecule in which a short sequence
serves as the template for the synthesis of the G-rich strand of
telomeric DNA (reviewed in reference 53). Widespread among eukaryotes, telomerase activity has been
identified in ciliates (23, 64, 76), yeast (11, 36,
37), Plasmodium falciparum (8), mammals
(45, 60), amphibians (38), sponges (32), and higher plants (16, 18, 28). In
single-cell eukaryotes, telomerase is constitutively active,
and the maintenance of the telomere length is essential for the
proliferative growth of the vegetative cells (for a review, see
reference 22). In humans, on the other hand,
telomerase activity is regulated during development and is
involved in conferring long-term proliferation capacity on regenerative tissues, such as blood stem cells (9, 13, 29), and the germ line (31, 74).
In addition to maintaining preexisting telomeres, telomerase
can catalyze the synthesis of telomeric repeats directly onto nontelomeric DNA. This has been observed during chromosome
healing, a process by which a broken chromosome is stabilized by the
formation of a new telomere (41). Chromosome healing may
occur spontaneously after an accidental or an artificially induced
chromosomal breakage or as a developmentally programmed event (reviewed
in reference 43). Spontaneous chromosome
healing is a random and rare process which is common to many eukaryotes
and has been demonstrated to occur in plants, protozoans, yeast,
nematodes, and vertebrates (33, 41, 57, 63, 69, 71-73). The
DNA sequences at the sites of new telomere addition in the different
eukaryotes analyzed so far support a telomerase-mediated
healing mechanism (33, 50, 63, 72, 73). In metazoans,
spontaneous chromosome healing may be developmentally controlled and
tissue specific, such that healing can happen only when
telomerase is available (2, 18, 26, 46), although
telomerase-independent processes are also capable of capping
broken chromosome ends (for a review, see reference 5).
Developmentally programmed chromosome breakage and healing has been
observed during the life cycles of several eukaryotic species.
During macronuclear formation in ciliates, massive genome rearrangements leading to the precise elimination of
micronucleus-specific sequences culminate in the efficient
formation of new telomeres on chromosomes specifically fragmented under
developmental control (for a review, see reference
58). Point mutations in the template region of
the telomerase RNA lead to the addition of altered telomeric DNA repeats directly onto chromosomal breakage sites in vivo
(75), thus demonstrating that telomerase accounts
for de novo telomere formation (reviewed in reference
6). Although telomerase is expressed
at all developmental stages, the levels of telomerase activity, telomerase RNA, and telomerase reverse
transcriptase peak when germ line micronuclei are converted
into somatic macronuclei following conjugation (1, 10,
59).
Another interesting example of developmentally programmed
chromosome healing occurs during the process of chromatin
diminution in the early embryo of the parasitic nematode Ascaris
suum. In all presomatic cells between the third and fifth cleavage
divisions (44), somatic differentiation of this organism is
marked by the programmed loss of about a quarter of the genomic
DNA. The eliminated DNA consists largely of highly repetitive
sequences but also includes single-copy genes (for a review, see
reference 47). Chromatin diminution is directed by a
complex molecular mechanism that initiates DNA cleavage within specific
chromosome breakage regions (CBRs), several kilobases in length. At
present, the molecular mechanism for recognition of the different CBRs is completely unknown, since they show no sequence homology with each
other and lack any discernible cis-acting DNA signal
specifying the positions of breakage. The ends of the reduced somatic
chromosomes are healed by the de novo addition of several kilobases of
the nematode telomeric hexamer TTAGGC. Within all CBRs that
have been analyzed so far, the germ line chromosomes before breakage
lack any preexisting internal telomeric repeats (30, 48).
The presence of 1 to 6 bp identical to the telomeric repeats at the new
telomere junctions, however, suggests that the 3' ends of the broken
chromosomes may have provided limited pairing with the putative
telomerase RNA template of an A. suum
telomerase (30, 48). Together with results obtained
from other organisms, these molecular data argue for
telomerase-mediated healing rather than for recombinational events.
In this study we demonstrate for the first time the presence of
telomerase activity in nematodes. By using cell extracts, we
developed a nematode telomeric repeat amplification protocol (nTRAP) PCR-based telomerase assay. We report on the
identification of A. suum telomerase
activity in vitro that is able to add telomeric repeats onto
nontelomeric DNA. This telomerase activity shows a peak in
early embryonic stages of A. suum undergoing chromatin diminution. Our results are consistent with earlier in vivo
observations and provide in vitro evidence that a telomerase
activity with minimal sequence specificity is involved in chromosome
healing during the process of chromatin diminution.
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MATERIALS AND METHODS |
Preparation of A. suum cell extracts.
Adult
A. suum organisms were collected in a slaughterhouse
from the intestinal lumen of a pig and maintained overnight at 37°C
in saline solution (4). Mature females were dissected, and
the fertilized eggs from the first vaginal third of each uterus were
isolated and stored at 4°C in 0.1 N H2SO4
(65). Synchronous development of the embryonated eggs was
initiated in bulk by incubation of the egg suspension in an aerated
rotatory shaker at 30°C (14). Samples of the culture
corresponding to 3 to 7 ml of packed eggs (10,000 to 15,000 eggs/µl)
were removed at the following times during embryonic development
for the preparation of stage-specific extracts: days 1 (1-cell stage),
2 (2-cell), 3 (4-cell), 4 (8-cell), 5 (blastula), 7 (gastrula), 8 (late-gastrula), 9 (early-L1), 13 (L1 motile), and 20 (L2). The
chitinous layer of the eggshell was removed by incubation of the eggs
for 1 h in 0.4 M KOH-1.35% NaClO, several washes in cold MilliQ
water, and a final wash in ice-cold homogenization buffer A
(39), modified as follows: 20 mM Tris acetate (pH 8)-1.5 mM
MgCl2-10 mM potassium glutamate-1 mM dithiothreitol-10 U
of RNasin (Promega)/ml-100 µM phenylmethylsulfonyl fluoride
(PMSF)-0.06 volume of protease inhibitor cocktail (31) (consisting of 7 µg of pepstatin/ml, 1.7 µg of aprotonin/ml, 1 µg
of leupeptin/ml, 10 µg of E-64/ml, 10 µg of chymostatin/ml, and
12.5 µg of antipain/ml [Boehringer Mannheim]). A. suum whole-cell S100 extracts were prepared at 4°C essentially
as previously described (27), with the following
modifications: 0.1-mm-diameter glass beads were added to the Dounce
homogenizer for the disruption of larval stages, the initial homogenate
was brought to a concentration of 100 mM potassium glutamate by the
addition of 0.1 volume of 1 M potassium glutamate, and after separation
by centrifugation, the supernatant was dialyzed against 20 mM Tris
acetate (pH 8)-100 mM potassium glutamate-1 mM dithiothreitol-0.2 mM
EDTA-10% glycerol. For embryonic stages, 1 µl of S100 extract
represents 10,000 to 40,000 embryos. Tissue- or cell-specific extracts
were made as described above from the ovary, oviduct, and intestinal
tract. Spermatids were collected from males by centrifugation from the pseudocoelomic fluid (66). The protein concentrations of the extracts were determined by the Bradford assay and the bicinchoninic acid assay (Pierce) with bovine serum albumin as a standard and were
typically 5 to 15 mg/ml.
Control extracts were pretreated by heat inactivation for 10 min at
68°C or protease digestion with 1 µg of proteinase K (Boehringer Mannheim)/µl or RNase digestion with 10 to 100 ng of DNase-free RNase
(Boehringer Mannheim)/µl for 20 min at 30°C. The untreated extract
was incubated in parallel with water as a mock digestion. Telomerase
protection against RNase A or against proteinase K was performed by the
previous addition of 6 U of RNasin RNase inhibitor (Promega)/µl or 1 mM PMSF (Boehringer Mannheim), respectively. Dilution of the extracts
was performed in the dialysis buffer to obtain the optimal
concentration that does not inhibit or saturate the nTRAP assay.
The nTRAP assay.
To assay for telomerase, the
sensitive PCR-based TRAP (31) was adapted to specifically
detect nematode telomerase activity. In a typical nTRAP assay,
telomerase was allowed to extend 0.1 µg of gel-purified
oligonucleotide primer (for primer sequences, see Table 1) at 25°C
for 30 min with 2 µl of extract at the optimal protein concentration
in 47 µl of a buffer described in reference 31,
containing 2 U of Taq DNA polymerase (Gibco-BRL), 10 mU of
RNasin (Promega), and potassium glutamate instead of potassium chloride. After the telomerase extension step, RNase A was
added to the tubes where it was missing. The reaction was stopped for 1.5 min at 95°C, and the reaction mixture was transferred to a PCR
tube previously filled with 0.1 µg of downstream primer and 5 µCi
of [
-32P]dATP (10 µCi/µl; 800 Ci/mmol). When the
extract was treated with proteinase K prior to the reaction,
Taq DNA polymerase was added after the denaturation step.
The PCR mixture was subjected to 31 cycles of denaturation at 94°C
for 30 s, annealing at 50°C for 30 s, and extension at
72°C for 45 s, followed by a final extension step at 72°C for
1.5 min. Amplification of the telomerase products was monitored
by incorporation of [
-32P]dATP into the PCR
products. A 10-µl aliquot of the PCR mixtures was mixed with 5 µl
of formamide loading dye mix (95% deionized formamide, 20 mM EDTA,
0.05% xylene cyanol FF, 0.05% bromophenol blue). Reaction products
were denatured at 95°C for 3 min and chilled on ice before separation
on a 12% polyacrylamide-7 M urea sequencing gel, which was exposed
without drying to X-ray film (Fuji) for 1 day to 1 week at
70°C.
nTRAP products were cloned in the pGEM-T vector (Promega) according to
the recommendations of the manufacturer, and plasmid DNA was purified
through spin columns (Qiagen) and sequenced by the Sanger dideoxy chain
termination method using Sequenase 2.0 (U.S. Biochemical).
For every primer pair used in the nTRAP assay, the oligonucleotides
were designed by using MacVector 6.5 (Oxford Molecular Ltd.) such that
primer interaction was minimal. In order to prevent staggered annealing
of the downstream primer (34), the TCPs (telomere
complementary primers) contained fewer than two telomeric repeats and were anchored at their 5' ends with
nontelomeric sequences. To serve as DNA size markers,
gel-purified oligonucleotides were either 5' phosphorylated with
[
-32P]ATP by using T4 polynucleotide
kinase (Boehringer Mannheim) or 3' elongated by 1 nucleotide with
[
-32P]ddATP by using terminal
deoxynucleotidyl transferase (Boehringer Mannheim) according to the
manufacturer's instructions.
Quantitation of nTRAP assays.
A twofold dilution series of
the stage-specific extracts was tested in the nTRAP assay for 26, 31, or 36 PCR cycles to determine the conditions that give a linear
response between the nTRAP signal and the amount of extract protein in
the assay. nTRAP products were separated by polyacrylamide gel
electrophoresis, and the signal intensity of a column covering
the entire nTRAP ladder was quantitated from each lane with a Molecular
Imager (Bio-Rad) for 4 to 24 h. The nTRAP signal was corrected for
the signal from the reaction without extract and was expressed as a
percentage of the activity observed with 2 µg of extract protein. The
best results were obtained with 26 PCR cycles. Under these conditions, a linear regression analysis determined a linear relationship between
the amount of protein per reaction and the telomerase level
with high probability (P < 0.0001) (StatView 4.5, Abacus Concepts Inc.) within a range of 125 ng to 2 µg of extract
protein (see Fig. 4 inset). For the schematic representation, a
logarithmic scale covering a protein range from 125 ng to 32 µg was
used for the x axis (Fig. 4). For the comparative analysis,
each extract was normalized to a total protein concentration of 0.5 µg/µl by dilution in the dialysis buffer and the telomerase
products were amplified for 26 cycles. For each extract, the signal
from the nTRAP products, present in the entire lane starting from the
first repeat, was measured, and the signal from the respective RNase A-treated reaction was subtracted as background. This specific telomerase activity is given as a percentage of the activity
observed with the 4-cell-stage extract. For each extract, several
reactions were performed to ensure the reproducibility of
telomerase recovery in the extracts, of nTRAP assays, and of
gel loading. The means and standard deviations, given with a 95%
confidence level (i.e., the vast majority of the values fall within 2 standard deviations of the mean), were calculated from three to five
independent reactions with one to three separate extracts of the
different stages (one extract for spermatids and 2-cell, blastula,
late-gastrula, and motile L1 stages; two extracts for oogonia, oocytes,
intestines, and 1-cell, 8-cell, gastrula, and early-L1 stages; and
three extracts for 4-cell and L2 stages). The means and standard
deviations of relative telomerase activity are reported on a
graph for each developmental stage relative to the normalized protein
amount of the extract (see Fig. 5).
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RESULTS |
Detection of telomerase activity in A. suum 4-cell embryos.
Since the conventional
telomerase assay originally developed for a
Tetrahymena sp. (24) failed to give a specific
A. suum telomerase assay (data not
shown), we have adapted the much more sensitive and
telomerase-specific PCR-based human TRAP assay (31) for our extracts. In our nTRAP assays, we used nontelomeric
oligonucleotide primers that were unlikely to self-associate and serve
as substrates for DNA polymerase. At their 3' ends, they contained 3 nucleotides corresponding to the nematode telomeric repeat TTAGGC
(Table 1). The oligonucleotides
were incubated in the presence of nucleotides and A. suum S100 whole-cell extract for extension with telomeric repeats
by telomerase. In a second step, the telomerase
extension products were PCR amplified with radiolabelled
nucleotides and a telomere complementary oligonucleotide, as a
downstream primer. The PCR products were separated on a sequencing gel
and visualized by autoradiography. For our experiments, we used
two different primer pairs. The first pair (nTS [nematode
telomerase substrate]-CTT and nCX) was a modified
version of the human TRAP upstream and downstream primers
(31). The 3' terminus of the nTS-CTT primer carried the
half-telomeric repeat CTT, and the PCR downstream primer nCX contained
mismatches in the nematode telomere complementary repeats to reduce
primer interaction (Table 1). In the second primer pair, the
nontelomeric primer me8-TTA was derived from a spontaneous de novo
telomere addition site found in the Caenorhabditis elegans
me8 mutation, a terminal deletion of the X chromosome (72). me8-TTA was used in conjunction with the downstream
primer TCP-23 (Table 1). Both telomerase primers were
efficiently elongated in S100 extracts prepared from A. suum 4-cell-stage embryos, resulting in typical TRAP ladders
with 6-base periodicity upon PCR amplification (Fig.
1). No PCR products were formed in the
absence of either upstream or downstream oligonucleotides (data not
shown). Omission of the extract in the reaction abolished the
accumulation of telomeric repeats (Fig. 1). However, the formation of
primer dimers persisted in the form of extract-independent PCR products
and was used as a positive PCR control (Fig. 1). Heat inactivation of
the extract prior to the nTRAP assay demonstrated that the extract did
not contain nucleic acids that interfered with the PCR (Fig. 1).
Furthermore, the activity-induced ladder formation was sensitive to
RNase A (100 ng/µl) and proteinase K (Fig. 1), attributes typical
of telomerase activity (24). The addition of
RNasin or PMSF before pretreatment of the extract with RNase A
or proteinase K protected the activity and thus confirmed the
sensitivity to RNase and protease, respectively (data not
shown). Cloning and sequencing of me8-TTA nTRAP elongation products confirmed that they resulted from the addition of the telomeric permutation (GGCTTA)n directly after and in phase
with the half-telomeric 3'-terminal bases of the primer (data not
shown).

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FIG. 1.
A. suum telomerase activity with
nontelomeric primers. An nTRAP assay was conducted with the primer pair
nTS-CTT and nCX and the primer pair me8-TTA and TCP-23 (see Table 1 for
primer sequences) in a cell extract from A. suum
4-cell-stage embryos. The nTRAP products were resolved on a 12%
polyacrylamide gel and subjected to autoradiography. Both primers were
efficiently used as substrates (Extract). The primer dimers resulting
from the interaction of the nTS-CTT and TCP-CC primers are indicated by
arrows. The periodicity of the banding profile is marked by six dots on
the right of each panel. No elongation was seen if the extract was
omitted from the assay (No extract), inactivated by heat prior to the
reaction (Heat), or pretreated with proteinase K or RNase A. The proteinase K experiment gave the same result for the me8-TTA
primer, but it is not shown here.
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To titrate the telomerase activity, the nTS-CTT primer was
incubated in the nTRAP reaction with a 10-fold dilution series of the
A. suum 4-cell-stage extract under the same conditions used for the PCR amplification of the telomerase products (Fig. 2A). Serial dilution of the extract
revealed that the formation of nTRAP products was roughly proportional
to the amount of A. suum extract in the reaction
mixture (10 µg to 100 ng of protein per assay). The detection limit
of telomerase activity was between 100 and 10 ng of protein per
assay, equivalent to approximately 200 to 20 4-cell embryos per
reaction (Fig. 2A, lanes 3 and 4). Conversely, by increasing the
incubation time of the telomerase extension step with the
undiluted extract from 0 to 30 min, a maximum number of detectable
repeats was added after 20 min (Fig. 2B). Since the reaction rate is
relatively high, a few repeats were already produced at the "zero"
time point, during the short time when the reaction mixture was warmed
up from the preincubation at 4°C to the denaturation step preceding
the PCR (Fig. 2B). Thus, the first time point in our experiment may be
closer to an initial burst reaction than to a real
zero time point. A net increase of telomerase products is seen
already after 4 min of incubation (Fig. 2B). Based on the
quantitation of the entire nTRAP ladder in our results and in a
temperature range from 15 to 37°C, we found the nTRAP assay to be
optimal with 2 µg of protein extract for an extension step of 30 min
between 23 and 27°C followed by amplification with 31 PCR cycles.
Furthermore, the experiments presented in Fig. 2 confirmed that the
elongation of the nTS-CTT oligonucleotide primer by telomeric repeats
is completed by the activity of the A. suum
extract and does not arise from a PCR artifact. In summary, our data
demonstrate the presence of a heat-labile ribonucleoprotein activity in
A. suum cell extracts from 4-cell-stage embryos that
elongates nontelomeric oligonucleotide primers with hexameric repeats
of the nematode telomere sequence. We propose that it represents
A. suum telomerase activity.

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FIG. 2.
Titration and kinetics of the A. suum
telomerase reaction. Decreasing amounts of extract or
increasing times of incubation were used in the
telomerase extension step with the nTS-CTT primer.
Otherwise, the conditions for the nTRAP assay were kept constant. (A) A
tenfold dilution series of the A. suum
4-cell-stage extract in a protein range from 10 µg to 1 ng was
incubated for 10 min. (B) Ten micrograms of protein from an
A. suum extract was incubated for 0 (initial
burst reaction; see the text), 1, 4, 7, 10, 20, or 30 min. The
reaction products were resolved on a 12% polyacrylamide gel and
subjected to autoradiography.
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Telomerase elongation of nontelomeric primers depends on
their 3' ends.
To analyze the interaction of A. suum telomerase with the 3' end of the nontelomeric
DNA substrate, we designed a set of four different nTS primers that had
the same length and sequence but differed at their 3' ends by telomeric
permutations of 3 bases (Table 1). By using TCP-CC as the
downstream primer (Table 1), the nTRAP assay with our
4-cell-stage extract produced a prominent band; this band was
specific for each of the permutated nTS primers and corresponded to the
first repeat added by the A. suum telomerase in
the reaction (Fig. 3). The bands did not
appear in reactions lacking the extract (data not shown) and were
sensitive to low levels (10 ng/µl) of RNase A (Fig. 3). The nTRAP
products were offset by 1 bp from one another, demonstrating that they
were specific to the 3'-end half-telomeric permutations of the
nTS primer. This is consistent with the interpretation that the
free 3' end of substrate DNA base pairs with the putative
A. suum telomerase RNA template and that the de
novo-synthesized telomere repeats are in phase with the terminal
telomere sequences. Thus, our findings are in agreement with the
telomerase elongation model proposed earlier (25).

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FIG. 3.
Primer recognition by the A. suum
telomerase. Four different nTS primers, identical in size
and 5' sequence but differing at their 3' termini by 3 base
permutations of the A. suum telomeric repeat, were
assayed in 4-cell extracts with (+) or without ( ) RNase A
pretreatment. Elongation products of the permutated primers were
amplified with the anchored downstream primer TCP-CC (see Table 1 for
primer sizes and sequences), resolved on a 12% polyacrylamide
gel, and subjected to autoradiography. The smallest nTRAP products of
each nTS permutated primer, corresponding to the first repeat added
by telomerase, are presented. Telomerase-specific
bands (arrows) are sensitive to RNase pretreatment of the
extract. The sizes of the nTRAP products are indicated.
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Telomerase activity peaks in early embryos undergoing
chromatin diminution.
If telomerase is involved in the
elimination process in A. suum, we would expect
telomerase activity to be high in early embryonic stages. To
test this hypothesis, we compared in vitro telomerase activity
from cultured A. suum embryos at different
developmental stages. Embryonic stages were monitored under the
microscope before extract preparation. As described previously
(14), the viability (>95%), i.e., the ability to
undergo mitosis, and the synchrony (>75%) of the embryos in culture
were very high. After 1 day of incubation, embryogenesis was
initiated, and the first rounds of zygotic division were completed at
24-h intervals. The 1- and 2-cell extracts represented prediminution
stages. The 4-cell extracts consisted of about 86% 4- to 5-cell
embryos, 12% 2- to 3-cell embryos, and <2% undeveloped embryos. In
4-cell-stage embryos, three somatic founder cells prepare for and
execute chromatin diminution within the next cleavage round of
embryogenesis (20, 54). The 8-cell and blastula (16 to 32 cells) extracts were prepared from slightly less synchronized embryos
but covered a period in embryogenesis during which the two last
presomatic cells undergo chromatin diminution, at the beginning
of gastrulation. Gastrula extracts were made from postdiminution and
cell-proliferative stages, in which the two primordial germ cells do
not divide until the end of embryogenesis. Late-gastrula extracts
were made largely from elongating embryos. The early-L1 extracts
represented morphogenetic stages ranging from the tadpole-shaped
embryo to the early vermiform first-stage larvae (L1). The extracts of
L1 motile stages were established exclusively from well-formed,
actively moving L1 larvae, and the L2 extracts were prepared from
infectious second-stage larvae (L2). We also prepared extracts
from dissected tissue: somatic extracts from the intestines of adult
worms and germ line extracts from spermatids, developing oocytes, and
oogonia (which, however, contained some ovarian tissue).
The quality of the extracts was estimated by visualization of the
proteins on a denaturing polyacrylamide-sodium dodecyl sulfate gel
stained with Coomassie blue. The protein concentrations and banding
patterns of all the extracts were similar and revealed no specific
protein degradation (data not shown). The total volume of the embryo
remains constant, and the eggshell remains impermeable, through
embryogenesis to the hatching L2 larval stage. Moreover, the embryonic
content of proteins, nonprotein nitrogens (15), and
ribosomes (52) does not change during this period of
development, suggesting that the total protein content per embryo
remains constant. Therefore, telomerase activity could be
compared relative to a normalized total protein content per nTRAP assay.
In order to evaluate whether the levels of telomerase activity
of the different extracts could be compared in a semiquantitative manner, we have estimated the linearity of the nTRAP assay with the
me8-TTA and TCP-23 primer pair. We titrated A. suum
4-cell extracts in nTRAP assays for 26, 31, and 36 PCR cycles in a
twofold dilution series in a protein range of 125 ng to 32 µg per
assay, representing 2.5 × 102 to 6.4 × 104 4-cell embryos. When 26 PCR cycles were used, the nTRAP
signal was proportional to the amount of A. suum
extract present in the reaction mixture, from 125 ng to 2 µg of
protein per assay (Fig. 4).
Concentrations of extract protein higher than 4 µg per reaction inhibited the PCR amplification, an effect previously described in the
human TRAP assay (9, 56). Based on these results, we
determined the telomerase activities from different
developmental stages by using 1 µg of protein per assay and 26 PCR
cycles for each extract (Fig. 5). The
intensities of the resulting RNase-sensitive signals were expressed
as the percentage of 4-cell embryo extracts which always produced the
highest level of telomerase activity (Fig. 5). A control
experiment with 2 µg of protein per reaction gave identical results
(data not shown), thus confirming that under these conditions the nTRAP
assay was not inhibited or saturated with the different extracts.

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FIG. 4.
Quantitation of nTRAP products obtained with
A. suum 4-cell extracts. The relationship between nTRAP
products and the amount of extract protein present in
the assay was determined from two independent titration experiments
using the primer pair me8-TTA and TCP-23 (see Table 1) and 26 PCR
cycles. Protein concentrations resulting from a twofold
serial dilution ranged from 0.125 to 32 µg per reaction. The nTRAP
products were resolved on 12% polyacrylamide gels similar to the
gel in Fig. 1. The amount of telomerase activity for each dilution was
measured from the entire lane and is expressed as a percentage of the
activity observed with 2 µg of extract protein. The x
axis represents a logarithmic scale of the amount of extract
protein in micrograms. (Inset) The linearity of the nTRAP between 0.125 and 2 µg of extract protein is demonstrated by a straight line in the
graph, which represents a linear regression on a decimal x
axis (see Materials and Methods).
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FIG. 5.
Comparison of relative telomerase activities in
different A. suum developmental stages and tissues. The
relative specific telomerase activity is expressed as a percentage of
the maximal activity observed with the 4-cell-stage extracts. The
signal intensities of nTRAP products from the entire lane were measured
on polyacrylamide gels, similar to that presented in Fig. 1, and are
presented for each specific extract in a bar chart relative to the
normalized protein amount per assay. Telomerase activities are
presented as means and standard deviations (positive and negative error
bars at the 95% confidence level), calculated from three to five
independent reactions, including one to three separate extracts of the
different stages.
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As shown in Fig. 5, relative levels of specific telomerase
activity were detected throughout embryogenesis in a regulated manner.
During the first two rounds of embryonic division, telomerase activity increased 10-fold and reached a maximum level in 4-cell-stage embryos, when three of the four blastomeres are ready to undergo chromatin diminution. During gastrulation, morphogenesis, and larval
development, telomerase activity progressively decreased. Telomerase activity was not detected in extracts prepared from the
adult intestinal tracts. In germ line extracts from oocytes and
spermatids, and surprisingly also from oogonia, relative specific telomerase levels were reproducibly low or undetectable. Mixing experiments excluded the presence of developmentally regulated telomerase inhibitors in those extracts that show low or no
telomerase activity (data not shown).
 |
DISCUSSION |
The adaptation of the PCR-based telomerase assay
(31) to A. suum cell extracts (nTRAP) has
enabled us to identify telomerase activity in a nematode.
Our results show that A. suum telomerase from
4-cell-stage extracts is capable of efficiently elongating different
nontelomeric primers with nematode-specific telomere repeats. Three
bases of permutated telomeric sequences located at the 3' ends of
nontelomeric nTS primers were recognized specifically by A. suum telomerase, suggesting that they anneal with the
putative RNA template and are elongated by the addition of the
next base in the telomere repeat. The results described here are,
therefore, fully in agreement with the telomere
elongation-translocation model proposed by Greider and Blackburn
(25). Furthermore, the genomic DNA sequences of virtually
all of a large number of analyzed chromosome breakpoints (>80), which
have been healed in vivo during the process of chromatin diminution,
contain at their chromosome-telomere junction 1 to 6 nucleotides that
correspond to and are in frame with the newly added telomeric
repeats (30, 48). Thus, in vivo, even one single base may
be sufficient to pair efficiently with the RNA template and to
initiate the synthesis of telomeric repeats. Since all 4 bases are
represented in the putative RNA template of A. suum
telomerase, any free 3' end of DNA can potentially be healed.
Telomere addition with minimal 3'-terminal sequence requirements has
also been found during spontaneous chromosomal healing in humans
(19, 35, 73) and Plasmodium (40, 57, 63) and has been suggested to occur in the free-living nematode C. elegans (72). In vitro, human and
Plasmodium telomerases were able to elongate
oligonucleotide primers covering the sites of new telomere
addition with as few as 2 nucleotides complementary to the RNA template
(8, 46).
In addition, Plasmodium telomerase can catalyze the
synthesis of telomeric repeats directly onto nontelomeric DNA without any apparent annealing with the RNA template. In this case, telomere addition occurs predominantly with a unique permutation of the telomeric sequence (8). The ability of telomerase to
initiate telomere synthesis, without proper annealing of the 3'
nucleotide, may also be important for ciliated protozoans during
developmentally programmed new telomere addition (75).
In vitro, telomere synthesis onto nontelomeric primers occurs by
two activities of the ciliate telomerase enzyme: either by
direct extension with a predominant permutation of the telomeric
sequence (42, 68) or by cleavage-initiated extension
(12, 21, 42). The in vivo studies with A. suum have shown no evidence for de novo telomere formation by such mechanisms. A. suum telomerase may not possess
such properties due to its flexible sequence requirements.
In A. suum, the specific telomerase activity
that synthesizes telomeres onto nontelomeric DNA is regulated during
development. Only a small amount of activity was found in 1-cell
embryos, while during the first two rounds of embryonic cell divisions,
it was up-regulated to reach a maximum level in 4-cell-stage
embryos, when three of the four blastomeres prepare for chromatin
diminution. The activity remained relatively high throughout
further embryonic development until the beginning of gastrulation, when
the last of the presomatic cells undergoes chromatin diminution, and
then constantly decreased. The temporal correlation of
telomerase activity with chromatin diminution, rather than with
the cell proliferation potential of the embryo, which is highest during
gastrulation, provides strong indirect evidence that it is involved in
the process of healing the broken chromosomes. Similarly,
telomerase activity in ciliated protozoans was found to be more
abundant during macronuclear formation, when massive de novo telomere
addition occurs (1).
In intestinal cells of adult A. suum animals, our nTRAP
assay did not detect telomerase activity. This was not
surprising, since the development of nematodes is characterized by the
phenomenon of eutely, i.e., the number and position of somatic cells in
adult worms remains constant (67). Thus, somatic tissues
contain no dividing cells and hence may not need telomerase
activity. Mixing experiments of different extracts excluded the
possibility that developmentally regulated telomerase
inhibitors were present in larval or intestinal extracts that showed
low levels of telomerase activity or none (data not
shown). Furthermore, telomerase activity was absent from
mature oocytes and spermatids, representing nonproliferating germ
line cells.
Surprisingly, however, our nTRAP assay did not detect significant
telomerase activity in extracts from oogonia either. It is
unlikely that proliferating germ cells contain no telomerase and that telomere maintenance in these cells relies completely on
different mechanisms, such as recombination or transposition (5). Furthermore, mixing of extracts from oogonia and
4-cell-stage embryos ruled out the existence of inhibitors of
telomerase itself (originating from the somatic ovarian tissue
that was contained in our oogonial preparations) or of the nTRAP assay
(data not shown). It is possible that telomerase activity in
oogonia is too low to be detected by the nTRAP assay but is still
sufficient for telomere length maintenance in germ cells. During
chromatin diminution, telomerase activity may be up-regulated.
In ciliated protozoans, e.g., the expression of the telomerase
RNA and reverse transcriptase genes increases greatly during
conjugation, a time of new macronuclear telomere formation (1,
10, 59), and in human cells, expression of the reverse
transcriptase catalytic subunit has been proposed to be required for
telomerase activation (51). Since the nematode
telomerase components are not yet cloned, this question could
not be addressed at present. Another interesting hypothesis is that the
ability to add telomeres onto broken chromosomes does not
represent an intrinsic feature of A. suum
telomerase but depends on developmentally regulated
modifications. In this case, oogonia may have normal levels of
telomerase, which, however, are unable to efficiently elongate
nontelomeric primers in our nTRAP assays. According to this model, the
specificity of A. suum telomerase is altered in
cells undergoing chromatin diminution in order to permit efficient
chromosome healing during this process. Early blastomeres may contain
developmentally regulated cofactors that enable
telomerase-DNA interaction by reducing efficiently the
requirements for long stretches of Watson-Crick base-paired alignments on the RNA template. A factor-assisted change in the behavior of telomerase exists during the formation of the
Euplotes macronucleus, where a developmentally
regulated chromosome healing factor that collaborates with
telomerase to initiate developmentally programmed de novo
telomere formation was identified (3). In Tetrahymena, on the other hand, no difference in DNA
processing has been found in preparations from vegetative and
developing cells (68). In vivo, however, chromosomal
breakage and telomere addition are tightly linked (17).
Thus, during the formation of the macronucleus, Tetrahymena
telomerase is likely to be part of a multisubunit complex that
recognizes specific sequences on the DNA, catalyzes cleavage, and forms
telomeres on the nascent ends. It is possible that A. suum telomerase is also part of a multifactorial
"elimination complex" that efficiently directs telomere addition in
vivo. Alternatively, specific DNA binding proteins could recognize the
chromosomal breakage sites and recruit or activate telomerase
to promote telomere formation in a reaction that is separate from DNA
cleavage. Models in which yeast telomere binding proteins, if located
internally, enhance telomere formation by increasing the activity of
telomerase or attracting it have been proposed (33,
61).
Efficient healing of the truncated chromosomes during chromatin
diminution is a critical event that ensures somatic chromosomal stability. Altogether, the telomerase data gained from
our in vitro studies provide strong indirect evidence for a role
of this enzyme during this process. Our data generally correlate well with biological data obtained earlier from A. suum and
demonstrate that A. suum telomerase has the
relaxed sequence requirements necessary to recognize the ends of
broken chromosomes. The interesting question of how the level of
telomerase activity and its specificity are regulated during
A. suum development remains to be addressed and
awaits purification or cloning of the telomerase components.
 |
ACKNOWLEDGMENTS |
We are grateful to Tim Nilsen and members of his laboratory for
excellent instruction and advice on the biochemistry of A. suum and to Calvin Harley and Nam Kim for sharing details on the TRAP assay before publication. We thank Joachim Lingner, Karin Brunschwig, Vincent Bernard, and Nathalie Niederberger for
helpful discussions, Monique Zetka and Francesca Palladino for critical reading of the manuscript, and Yolande Molleyres and Hubert Gachoud for
technical assistance.
This work was supported by grants 31-001.91 and 31-40776.94 from the
Swiss National Science Foundation.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute of
Zoology, University of Fribourg, Pérolles, CH-1700 Fribourg,
Switzerland. Phone: 41-26-3008896. Fax: 41-26-3009741. E-mail:
fritz.mueller{at}unifr.ch.
Present address: Department of Molecular Biology, The Scripps
Research Institute, La Jolla, CA 92037.
 |
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Molecular and Cellular Biology, May 1999, p. 3457-3465, Vol. 19, No. 5
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
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