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Molecular and Cellular Biology, June 1999, p. 4262-4269, Vol. 19, No. 6
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Basis for the Checkpoint Signal Specificity That
Regulates Chk1 and Cds1 Protein Kinases
Jean-Marc
Brondello,
Michael
N.
Boddy,
Beth
Furnari, and
Paul
Russell*
Departments of Molecular Biology and Cell
Biology, The Scripps Research Institute, La Jolla, California 92037
Received 19 January 1999/Returned for modification 9 February
1999/Accepted 24 March 1999
 |
ABSTRACT |
Six checkpoint Rad proteins (Rad1, Rad3, Rad9, Rad17, Rad26, and
Hus1) are needed to regulate checkpoint protein kinases Chk1 and Cds1
in fission yeast. Chk1 is required to prevent mitosis when DNA is
damaged by ionizing radiation (IR), whereas either kinase is sufficient
to prevent mitosis when DNA replication is inhibited by hydroxyurea
(HU). Checkpoint Rad proteins are required for IR-induced
phosphorylation of Chk1 and HU-induced activation of Cds1. IR activates
Cds1 only during the DNA synthesis (S) phase, whereas HU induces Chk1
phosphorylation only in cds1 mutants. Here, we investigate
the basis of the checkpoint signal specificity of Chk1 phosphorylation
and Cds1 activation. We show that IR fails to induce Chk1
phosphorylation in HU-arrested cells. Release from the HU arrest
following IR causes substantial Chk1 phosphorylation. These and other
data indicate that Cds1 prevents Chk1 phosphorylation in HU-arrested
cells, which suggests that Cds1 actively suppresses a repair process
that leads to Chk1 phosphorylation. Cds1 becomes more highly
concentrated in the nucleus only during the S phase of the cell cycle.
This finding correlates with S-phase specificity of IR-induced
activation of Cds1. However, constitutive nuclear localization of Cds1
does not enhance IR-induced activation of Cds1. This result suggests
that Cds1 activation requires DNA structures or protein activities that
are present only during S phase. These findings help to explain how
Chk1 and Cds1 respond to different checkpoint signals.
 |
INTRODUCTION |
Genomic integrity is enhanced by
cell cycle checkpoints that prevent the onset of mitosis while DNA
replication or repair is underway (11, 19-21). Checkpoint
defects contribute to genomic instability in human cells; thus, an
understanding of checkpoint signaling mechanisms may assist efforts
aimed at combating tumor development and other diseases.
Studies of the fission yeast Schizosaccharomyces pombe have
played an important role in the unraveling of checkpoint mechanisms (10, 36, 38). These studies have focused on "checkpoint Rad" proteins that are required for both the replication checkpoint elicited by hydroxyurea (HU) and the repair checkpoint activated by
DNA-damaging agents, such as ionizing radiation (IR). The list of
checkpoint Rad proteins includes Rad1, Rad3, Rad9, Rad17, Rad26, and
Hus1. The biochemical functions of checkpoint Rad proteins are poorly
understood, but they appear to be involved in sensing stalled
replication complexes and damaged DNA. Many of these proteins have
human homologs, including Rad3, which has substantial structural and
functional similarity to the human ATM and ATR proteins (5). The list of proteins involved in checkpoints continues to expand. Recent studies have identified Cut5/Rad4 and Crb2/Rhp9 as checkpoint proteins in fission yeast (39, 40, 46).
The checkpoint Rad proteins are thought to activate or be components of
a signal transduction process that regulates elements of the mitotic
control network. One of these signal transduction proteins is Chk1, a
protein kinase that is required for the repair checkpoint (2,
44). DNA damage causes phosphorylation of Chk1 by a mechanism
that requires checkpoint Rad proteins, but the identity of the
Chk1-directed kinase and the effect of phosphorylation remain to be
discovered (45). Chk1 phosphorylates Cdc25, the protein
phosphatase that dephosphorylates tyrosine-15 of the cyclin-dependent kinase Cdc2 (17, 23, 33, 41). The tyrosine-dephosphorylated form of Cdc2 induces the onset of mitosis. The repair checkpoint decreases Cdc2 tyrosine-15 dephosphorylation in vivo, indicating that
Chk1 inhibits Cdc25 (17, 34). This hypothesis was recently confirmed by direct inhibition of Cdc25 by Chk1 in vitro (6, 16). Chk1 also induces association of Cdc25 to 14-3-3 proteins (23, 33, 41, 48). DNA damage induces net nuclear export of
Cdc25 by a process that is dependent on Rad24, a 14-3-3 protein (25). Cdc2/cyclin-B, the substrate of Cdc25, is localized in the nucleus; thus, nuclear export of Cdc25 is expected to inhibit mitosis.
The repair and replication checkpoints require the same six checkpoint
Rad proteins (2, 12) and regulate tyrosine-15 phosphorylation of Cdc2 (13, 26, 34, 35). However, the two
checkpoints differ in their requirements for signaling proteins that
function downstream of the checkpoint Rad proteins but upstream of the
proteins that regulate Cdc2. Thus, Chk1 is essential for the repair
checkpoint activated by DNA damage but not the replication checkpoint
elicited by HU. This may be explained if the replication checkpoint has
an element of redundancy that is absent in the repair checkpoint.
Support for this hypothesis came from recent studies that showed that
Chk1 is essential for HU-induced checkpoint arrest in cds1
mutant cells (7, 24, 48). Cds1 is a protein kinase that is
activated by a checkpoint Rad protein-dependent process in cells
treated with HU (7, 24, 31). Increased production of Cds1
prevented mitosis, which suggested that Cds1 might be an effector of
the replication checkpoint (7). Cds1 was proposed to
positively regulate Wee1 and Mik1, the two protein tyrosine kinases
that phosphorylate Cdc2 on tyrosine-15 (7). Cds1 also
regulates Cdc25 by catalyzing phosphorylation on the same sites that
are phosphorylated by Chk1 (16, 48). Cds1 also has an HU
"recovery" function, because the HU checkpoint is largely intact in
cds1 cells and yet cell viability is greatly reduced
(31).
A model in which Chk1 and Cds1 act as dual effectors of the replication
checkpoint explains why the checkpoint is intact in cds1 and
chk1 single mutants but absent in the double mutant. However, the model does not explain why Chk1 remains unphosphorylated in response to HU treatment in wild-type cells (45) or why
HU treatment of cds1 mutant cells leads to substantial
phosphorylation of Chk1 (24). It was proposed that Cds1
might be required to stabilize replication structures in HU-arrested
cells, thus preventing DNA damage that would lead to phosphorylation of
Chk1 (24). This model accounts for many findings, but it
does not explain why the activity of checkpoint Rad proteins should
lead to activation of Cds1 but not phosphorylation of Chk1 in
HU-treated cells. Nor does the model explain why IR and other agents
that damage DNA induce phosphorylation of Chk1 but not activation of
Cds1 in G2, the period of the cell cycle that follows the
DNA synthesis (S) phase. Here, we report that IR-induced
phosphorylation of Chk1 is actively prevented in HU-arrested cells.
This finding suggests that suppression of repair processes that lead to
Chk1 phosphorylation might be important in HU-arrested cells. We also
report that Cds1 becomes more highly concentrated in the nucleus during
S phase and in cells treated with HU. These findings provide a basis
for understanding the checkpoint signal specificity of Chk1
phosphorylation and Cds1 activation.
 |
MATERIALS AND METHODS |
Strains, plasmids, and general techniques.
The following
strains were used in this study: PR109 (wild type), BF1919
(chk1:HAHIS), NR1592
(chk1::ura4+), JMB2274
(chk1:HAHIS cds1::ura4+), JMB2275
(nmt1:GST-cds1+ chk1:HAHIS), NB2276
(cds1-GFP), and NB2342 (cds1-NLSGFP). All strains
were leu1-32 ura4-D18. The
chk1::ura4+,
cds1::ura4+, and
nmt1:GST-cds1+ constructs have been described
(7, 17, 34). The chromosomal copy of
chk1+ was tagged with a sequence encoding two
copies of the hemagglutinin (HA) epitope and hexahistidine by using a
previously described strategy (42). To make the
cds1-GFP construct, the open reading frame of
cds1+ (nucleotides 346 to 2016) was amplified by
PCR by using the following primers:
5'-CGCCCGCGCCTGCAGCGCATGCTTGATGGTAAG-3' and
5'-CAGCATGCGGCCGCTACTCGAAGAATTGAGCTG-3'. To make the
cds1-NLS-GFP construct, the open reading frame of cds1+ (nucleotides 346 to 2016) was amplified by
PCR by using the following primers:
5'-CGCCCGCGCCTGCAGCGCATGCTTGATGGTAAG-3' and
5'-CAGCATGCGGCCGCTCTTACGCTTCTTCTTAGGACTCGAAGAATTGAGCTG-3'. The PCR products were digested with PstI and
NotI and cloned into the vector pXGFP, which placed the
cds1+ open reading frame upstream of and in
frame with the green fluorescent protein (GFP) open reading frame.
Plasmid pXGFP, a plasmid that has the selectable marker
ura4+, also contains the nmt1
terminator sequence downstream of GFP (8). The resulting
vector was digested with NheI in the cds1 sequence and integrated at the cds1+ locus in
PR109. The resultant strain expresses Cds1-GFP from the cds1
locus. The same approach was used to express Cds1-nuclear localization
signal (NLS)-GFP from the cds1 locus. Growth media and
general methods for S. pombe have been described
(30). Unless otherwise indicated, yeast cultures were grown
at 30°C in YES medium (glucose, yeast extract, amino acid
supplements). HU was used at a concentration of 12 mM. Cells were
irradiated at a dose of 100 Gy with a 137Cs source. Growth
media and conditions for induction of nmt1-driven constructs
have been described (4). Synchronized cultures were made by
centrifugal elutriation. Fluorescence-activated cell sorter (FACS)
analysis was performed with ethanol-fixed cells at an optical density
at 600 nm (OD600) of 1 as described (37).
Immunoblotting and microscopy.
Cells were lysed in buffer A
(50 mM Tris [pH 8], 150 mM NaCl, 5 mM EGTA, 10% glycerol, 0.1%
Nonidet P-40, 5 mg of leupeptin-aprotinin-pepstatin per ml, and 1 mM
phenylmethylsulfonyl fluoride). The protein concentration was
normalized by using the OD280 reading, and the proteins
were separated by sodium dodecyl sulfate-8% polyacrylamide gel
electrophoresis (acrylamide:bisacrylamide ratio, 29.2/0.8) and
transferred to nitrocellulose membrane. Blots were blocked with 5%
milk in TBST (25 mM Tris [pH 7.6], 137 mM NaCl, and 0.2% Tween 20).
Chk1HAHIS was precipitated with
Ni2+-nitrilotriacetic acid beads and revealed with
antibodies to HA, followed by anti-mouse immunoglobulin G antibodies
coupled with horseradish peroxidase. Enhanced chemiluminescence
detection (Pierce) was used to visualize proteins. The Cds1 kinase
assay was performed as described by using glutathione
S-transferase (GST)-Wee11-152 and the
GST-Wee11-70 truncation product as substrates
(7). Cells were photographed by using a Nikon Eclipse E800
microscope equipped with a Photometrics Quantix charge-coupled device
camera. Images were acquired with IPLab Spectrum software (Signal
Analytics Corporation).
 |
RESULTS |
Chk1 is phosphorylated and delays mitosis when cells recover from
an HU-induced arrest.
The studies described in this report were
prompted by an experiment that carefully monitored the division
kinetics of wild-type and chk1 cells that were incubated
with 12 mM HU for 8 h at 30°C. In agreement with the results of
previous studies (3, 44), the two strains underwent
checkpoint arrest with very similar kinetics, as shown by the parallel
decreases in septation index (Fig. 1A).
Fission yeast cells eventually replicate DNA in medium containing 12 mM
HU (31), as indicated by the reappearance of septated cells
after approximately 7 h in the wild-type cell culture (Fig. 1A).
In this experiment, resumption of division in the chk1 cell
culture was advanced approximately 1 h relative to that in the
wild type (Fig. 1A). This phenomenon was examined in a different experimental protocol, in which wild-type and chk1 cells
were treated with HU for 4 h and then washed in medium lacking HU. In this experiment, division in the chk1 cell culture was
advanced approximately 20 min relative to that in the wild type (Fig.
1B).

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FIG. 1.
Chk1 delays mitosis during recovery from an HU-induced
arrest. (A) Wild-type or chk1 cells were treated with HU,
and the septation index was monitored at hourly intervals. The
chk1 strain underwent division before the wild-type strain.
(B) Wild-type or chk1 strains were treated with HU for
4 h. HU was then removed by washing cells in YES media, and the
septation index was monitored every 20 min. Division was advanced in
the chk1 cells relative to that in the wild type.
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Wild-type and
chk1 cells normally divide at the same size
when grown in the absence of HU or DNA-damaging agents. Thus, Chk1
apparently has no role in determining the timing of mitosis, except
when DNA is damaged. The fact that mitosis is advanced in
chk1 cells relative to wild-type cells as these cells
recover from
an HU treatment suggested that Chk1 might become activated
following
release from a replication checkpoint arrest. This proposal
was
explored by performing immunoblot analysis of Chk1 in cells
released
from a 4-h HU-induced arrest. The form of Chk1 with reduced
mobility
was not detected in cells held at the HU-induced arrest (Fig.
2), a finding consistent with previous
studies (
45). However,
a small amount of the phosphorylated
species of Chk1 was detected
at later time points, and the species was
most evident at 80 min
following the release from the HU-induced arrest
(Fig.
2A, right
panel). The phosphorylated form of Chk1 was not
detected for cells
that were maintained in the presence of HU for an
additional 100
min (Fig.
2A, left panel). Flow cytometry analysis
showed that
bulk DNA synthesis was largely completed at between 40 and
80
min in cells that were released from the HU-induced arrest (Fig.
2B), approximately coincident with the appearance of the phosphorylated
form of Chk1.

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FIG. 2.
Chk1 is phosphorylated as cells recover from an
HU-induced arrest. Cells were treated with HU for 4 h at 30°C.
HU was removed from half of the culture by washing in YES medium. The
other half of the culture was left in the presence of HU. Cells were
harvested every 20 min. (A) Samples were processed for immunoblot
analysis of Chk1. (B) Samples were processed for FACS analysis to
determine DNA content after HU release. *, phosphorylated form of
Chk1.
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Chk1 is not phosphorylated in response to DNA damage in cells held
at the HU-induced arrest.
Our studies indicated that the
Chk1-dependent repair checkpoint was activated as cells recovered from
an HU-induced replication checkpoint but not while the cells were held
at the HU-induced arrest. These observations suggested that HU causes
DNA damage or at least DNA anomalies that are perceived as damage and
that phosphorylation of Chk1 is nevertheless delayed until replication is largely completed. These findings raised the question of whether it
was possible to activate the repair checkpoint (as assayed by Chk1
phosphorylation) in cells that were arrested at the replication checkpoint. This question was addressed by using IR to inflict DNA
damage on cells that were arrested at the S- to M-phase replication checkpoint with HU. In agreement with previous studies (24, 45), we observed that IR treatment of cells in an asynchronous culture induced substantial phosphorylation of Chk1 (Fig.
3A). In this experiment, cells were
harvested immediately after exposure to IR. There was a dose-dependent
relationship between the amount of IR and the amount of phosphorylated
Chk1. A dose of 100 Gy caused approximately 25 to 50% of the Chk1 to
migrate with reduced electrophoretic mobility (Fig. 3A). In cells that
were exposed to a 100-Gy dose of IR, the amount of phosphorylated Chk1
decayed with time following completion of irradiation (Fig. 3B).
Phosphorylated Chk1 was almost undetectable at 120 min, which coincided
with the resumption of cell division (Fig. 3B).

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FIG. 3.
IR fails to cause Chk1 phosphorylation in cells arrested
with HU. (A) An asynchronous culture of wild-type cells was exposed to
-irradiation (0 to 100 Gy). Samples were processed immediately for
immunoblot analysis of Chk1. (B) Wild-type cells were exposed to a
100-Gy dose of -irradiation. Samples were processed for immunoblot
analysis of Chk1 and measurement of septation index during a 120-min
time course. (C) Cells were treated with HU for 3.5 h at 30°C,
followed by exposure to a 100-Gy dose of -irradiation. HU was
removed from half of the culture by washing in YES medium. The other
half of the culture was left in the presence of HU. Cells were
harvested every 20 min. (D) Samples from the experiment described in
the legend for panel B were processed for FACS analysis to determine
the DNA content after HU release. *, phosphorylated form of Chk1.
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Importantly, we found that a 100-Gy dose of IR was incapable of
inducing Chk1 phosphorylation in HU-treated cells (Fig.
3C).
However,
the slower-mobility form of Chk1 became quite prominent
within 60 min
after the release from the HU-induced arrest (Fig.
3C, right panel).
The phosphorylated form of Chk1 was not detected
in cells that were
maintained in the presence of HU (Fig.
3C,
left panel). In this
experiment most of the DNA was replicated
at between 40 and 60 min
after the release from the HU-induced
arrest, apparently coincident
with the appearance of the phosphorylated
species of Chk1 (Fig.
3D).
These data suggest that the repair
checkpoint, or at least the signal
transduction pathway that leads
to Chk1 phosphorylation, cannot be
activated while cells are arrested
at the replication
checkpoint.
Cds1 suppresses phosphorylation of Chk1.
The protein kinase
Cds1 is activated in HU-arrested cells and is essential for the
replication checkpoint in a chk1 mutant background (7,
24). It was recently reported that Chk1 becomes phosphorylated in
cds1 cells that have been treated with HU (24), as we have also observed (Fig. 4A). These
findings suggested that Cds1 prevents DNA damage in HU-treated cells,
thereby preventing phosphorylation of Chk1 (24). However,
our studies revealed that Chk1 is not phosphorylated in HU-arrested
cells when IR causes damage (Fig. 3). These findings suggested that
Cds1 might actively prevent phosphorylation of Chk1. This idea was
explored by determining whether expression of a large amount of Cds1
prevents phosphorylation of Chk1 in response to DNA damage. Expression
of a large amount of GST-Cds1 under the control of the
thiamine-repressible nmt1 promoter causes a cell cycle
arrest (7). We observed that overproduction of GST-Cds1
completely suppressed phosphorylation of Chk1 induced by IR (Fig. 4B).
These observations support a model in which activated Cds1 prevents
Chk1 phosphorylation.

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FIG. 4.
Overproduction of Cds1 prevents phosphorylation of Chk1.
(A) HU induces Chk1 phosphorylation in a cds1 background.
Wild-type or cds1 cells were HU treated for 3.5 h.
Samples were processed for immunoblot analysis of Chk1. (B) GST-Cds1
overexpression in G2 prevents phosphorylation of Chk1 that
is induced by DNA damage. Cells that expressed GST-Cds1 under the
control of the thiamine-repressible nmt1 promoter were grown
in minimal media containing thiamine (+B1; nmt1-repressing
conditions) or lacking thiamine ( B1; nmt1-inducing
conditions) for 20 h. Cells were irradiated or mock
irradiated. Samples were processed for FACS analysis to determine DNA
content (upper panel) or for immunoblot analysis of Chk1 (lower panel).
*, phosphorylated form of Chk1.
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Chk1 is not required to restrict damage-induced activation of Cds1
to S phase.
Our findings suggest a model in which activated Cds1
prevents the phosphorylation of Chk1. This model predicts that Cds1
should not be activated in situations in which Chk1 is normally
phosphorylated, such as in irradiated cells that are in G2,
the period between S phase and mitosis (M). This model receives support
from a recent study that showed that Cds1 is activated by DNA damage
but that the damage-induced activation of Cds1 is restricted to S phase (24). These observations raised the question of whether Chk1 is required to prevent damage-induced activation of Cds1 during G2. We designed two experiments to answer this question.
First, we asked whether elimination of Chk1 leads to increased
activation of Cds1 in asynchronous culture, in which ~70% of cells
are in G2. Cds1 activity was measured by using an assay in
which a GST fusion protein containing an NH2-terminal
fragment of Wee1 (GST-Wee170) is used both as an affinity
reagent and as a substrate for Cds1 (7). This assay is
highly specific for Cds1 (7). Thus, in this assay, the term
activation refers to the ability of Cds1 to both bind and phosphorylate
GST-Wee170. Irradiation of asynchronous wild-type and
chk1 cells resulted in very similar levels of Cds1
activation (Fig. 5A). There appeared to
be a slight increase in Cds1 activity in the chk1 mutant.
However, this modest increase in Cds1 activity is probably due to the
small number of chk1 cells that should initiate mitosis with
damaged DNA and then enter S phase during the 30-min period of
irradiation.

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FIG. 5.
Chk1 does not prevent Cds1 activation in G2
phase. (A) Asynchronous cultures of wild-type or chk1 cells
were irradiated with 100 Gy. Samples were harvested to measure Cds1
kinase activity by using GST-Wee11-152 as a substrate. (B)
A chk1 strain was synchronized in G2 by
elutriation. Cells were irradiated (+IR) or mock irradiated ( IR).
Samples were harvested to measure septation index and Cds1 kinase
activity by using GST-Wee11-152 as a substrate. The band
shown corresponds to the GST-Wee11-70 degradation product
as previously described (7). DNA damage incurred during the
G2 phase activated Cds1 only after cells had completed
mitosis and entered S phase. Arrows indicate two different forms of
GST-Wee11-70.
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The second experiment used a synchronous culture of
chk1
cells in early G
2 phase prepared by centrifugal
elutriation. These
cells were irradiated, or mock irradiated, and
samples were harvested
at regular intervals. Cell cycle progression was
monitored by
measurement of the septation index. Cds1 activity was
negligible
immediately after irradiation (30 min), which corresponds to
G
2 (Fig.
5). Cds1 activity remained quite low at the
following two
time points (50 and 70 min). These time points correspond
to late
G
2 and M. A substantial increase in Cds1 activity
occurred at
90 min. This time point coincides with the rise in
septation index
and the onset of S (Fig.
5). Cds1 activity remained
high at the
following time point and then gradually decreased. In
contrast
to the irradiated culture, the phosphorylation of
GST-Wee1
70 remained relatively low in extracts made from
the mock-irradiated
culture. These data show that substantial
damage-induced activation
of Cds1 occurs only during S, a finding
consistent with another
recent study (
24). Our data also
show that Chk1 plays no role
in preventing the damage-induced
activation of Cds1 during G
2.
Cds1 accumulates in the nucleus during S phase.
How is the
activation of Cds1 by DNA damage restricted to S phase? One hypothesis
that might explain this observation is that Cds1 is localized in the
nucleus only during S phase. Examination of the localization of Cds1
that was expressed as a GFP fusion protein tested this hypothesis. This
experiment used a strain in which the genomic copy of
cds1+ was modified to encode Cds1 protein with
GFP fused at the C terminus. This strain was identical to the wild type
in regard to HU sensitivity (Fig. 6A) and
HU-induced cell cycle arrest (8); thus, Cds1-GFP appeared to
be fully functional. This conclusion was supported further by the
observation that Cds1 and Cds1-GFP were activated equally by
HU-treatment in the GST-Wee170 phosphorylation assay (Fig.
6B).

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FIG. 6.
Cds1 accumulates in the nucleus during S phase. (A)
Addition of GFP or NLS-GFP to the C terminus of Cds1 does not
compromise its function. The HU sensitivity of wild-type (WT),
Cds1-GFP, Cds1-NLS-GFP, and cds1 cells was determined by
monitoring the colony formation during the time course of HU exposure.
(B) Modified forms of Cds1 behave the same as the WT in the Cds1 kinase
assay following treatment or mock treatment with HU. (C) Cds1-GFP
localization was determined by fluorescence microscopy in an
asynchronous population (left panel), after 4 h of HU treatment
(middle panel), or after a 100-Gy dose of irradiation (right panel).
Cds1 is nuclear in septated cells and attached daughters. During
HU-induced arrest, Cds1 is strongly nuclear. In contrast, after
irradiation, Cds1 is not accumulated in cells arrested at
G2. (D) Percentages of cells with relative nuclear staining
intensities for Cds1 in an asynchronous population (AS), HU-arrested
cells, or 100-Gy-irradiated cells ( ).
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The localization of Cds1-GFP was examined in an asynchronous culture
containing cells in all phases of the cell cycle (Fig.
6C). Cds1-GFP
was detected in the nuclei of all cells, but the
nuclear signal
appeared to be increased substantially in cells
that contained a septum
or were attached daughters (Fig.
6D).
In asynchronous cultures, these
cells are in S phase (
29). In
uninucleate cells that were in
G
2 phase, the nuclear Cds1-GFP
signal appeared to be
slightly higher than the cytoplasmic signal
(Fig.
6C and D). In
cultures treated with HU for 4 h, 79.5% of
the cells presented a
strong Cds1-GFP signal in the nucleus (Fig.
6C and D). Immunoblot
analysis has shown that the abundance of
Cds1 is equal in HU-treated
and mock-treated cells (
7,
24);
thus, the increased nuclear
signal in HU-arrested cells is apparently
due to increased nuclear
localization of Cds1. The cytoplasmic
Cds1-GFP signal was not
noticeably decreased in HU-arrested cells,
but this is probably because
the cytoplasmic signal is never substantially
above background
fluorescence. Thus, it appears that the increased
nuclear signal of
Cds1-GFP during S phase is driven by changes
in the localization of
Cds1-GFP. DNA damage appeared to have a
slight effect on the
localization of Cds1-GFP (Fig.
6C and
D).
To explore whether the S-phase-specific activation of Cds1 by DNA
damage was explained solely by protein localization, we
examined the
effect of constitutive nuclear localization of Cds1.
This experiment
used a strain in which the genomic copy of
cds1+
was modified to encode Cds1 protein fused at the C terminus to
the
simian virus 40 NLS and GFP. As was true for Cds1-GFP, the
Cds1-NLS-GFP
appeared to be fully functional in the HU sensitivity
and
GST-Wee1
70 phosphorylation assays (Fig.
6). Microscopic
observation revealed
that Cds1-NLS-GFP presented a strong nuclear
signal in all cells
of an asynchronous culture (Fig.
7A). Importantly, the cells expressing
Cds1-NLS-GFP were not abnormally elongated, which indicated that
the
constitutive nuclear localization of Cds1 did not cause a
checkpoint
arrest (Fig.
7A). Indeed, the GST-Wee1
70 phosphorylation
assay confirmed that Cds1-NLS-GFP activity was
low in asynchronous
cells and was greatly stimulated in HU-arrested
cells (Fig.
6B). These
activities were equivalent to those of
Cds1 and Cds1-GFP.

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FIG. 7.
Cds1-NLS-GFP that is constitutively present in the
nuclei of G2 cells is not activated by irradiation. (A) A
strain expressing Cds1-NLS-GFP was grown in minimal media at 30°C.
Cds1-NLS-GFP localization was determined by fluorescence microscopy in
an asynchronous population ( ) or after 100 Gy of irradiation (+ ). Cds1 remains nuclear at all stages of the cell cycle, even during
a DNA-damage-induced arrest at G2. (B) Activities of
Cds1-GFP and Cds1-NLS-GFP after irradiation were measured with
GST-Wee11-70 as a substrate. Cds1-NLS-GFP and Cds1-GFP are
both weakly activated by irradiation, while a strain deleted for Cds1
has no detectable activity.
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The localization pattern of Cds1-NLS-GFP was unaffected by irradiation
(Fig.
7A). Moreover, Cds1-GFP and Cds1-NLS-GFP were
activated to
similar amounts by irradiation (Fig.
7B). This activity
was not
detectable in a strain deficient in Cds1 (Fig.
7B). If
nuclear
localization were limiting for damage-induced activation
of Cds1,
activation of Cds1-NLS-GFP should have been higher than
that of
Cds1-GFP. These facts argue that nuclear localization
per se is not the
key event regulating Cds1. Perhaps Cds1 activation
is dependent on
interaction with certain DNA structures or protein
complexes that are
present in the nucleus only during S
phase.
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DISCUSSION |
The goal of this study was to understand how the checkpoint
kinases Cds1 and Chk1 can be differentially responsive to distinct checkpoint signals and yet be regulated through a common set of sensor
proteins, namely, the checkpoint Rad proteins. Specifically, we wanted
to understand why HU fails to induce Chk1 phosphorylation except in a
cds1 mutant and why DNA damage fails to induce Cds1 activation except during S phase. Explanations for the former observation are that Chk1 is phosphorylated only in response to DNA
damage, HU does not damage DNA, and Cds1 is required to prevent DNA
damage in HU-arrested cells (24). This model accounts for most of the data. However, the model does not explain why checkpoint Rad proteins are required for both the repair and replication checkpoints, and for phosphorylation of Chk1, and yet only DNA damage
causes Chk1 phosphorylation. Moreover, the model is also apparently
inconsistent with studies that showed that HU stimulates recombination
(15, 18, 27, 43). Most relevant to our studies is a recent
report that showed that a 4-h incubation in HU increases mitotic
recombination between two ade6 heteroalleles by ~80-fold (43). Recombination proceeds via the double-strand breakage of DNA and thus involves repair processes that, in principle, should
induce Chk1 phosphorylation. An important test of the model is that IR
and other DNA-damaging agents should induce Chk1 phosphorylation in
HU-arrested cells. Here, we have shown that this prediction is
incorrect. IR failed to induce Chk1 phosphorylation in cells arrested
at the replication checkpoint with HU. These findings accord with those
presented in another recent report (28).
One explanation for the failure of IR to induce Chk1 phosphorylation in
HU-arrested cells could be that these cells are highly efficient at
repairing DNA damage. Rad53 and Dun1, Cds1-like proteins present in
budding yeast, are apparently involved in the transcriptional induction
of repair enzymes (11). If Cds1 has an equivalent role in
fission yeast, it is possible that HU-induced activation of Cds1 could
result in very rapid repair of DNA damage. This model might also help
explain why Chk1 is phosphorylated in HU-arrested cds1
cells, because these cells might be deficient in DNA repair enzymes.
However, this model can be excluded on theoretical and factual grounds.
First, IR-induced double-strand breakage of DNA is almost exclusively
repaired by recombinational mechanisms that require intact homologous
chromosomes. HU-treated cells arrest with unreplicated chromosomes;
thus, on a theoretical basis, DNA double-strand breaks cannot be
repaired in HU-arrested haploid cells. This argument is factually
supported by the observation that release of IR-treated cells from an
HU-induced arrest leads to a large increase in Chk1 phosphorylation.
Thus, IR-induced damage was apparently left unrepaired in HU-arrested
cells, but it was unable to induce Chk1 phosphorylation. Once released
from the HU-induced cell cycle arrest, IR-exposed cells become greatly elongated and are apparently unable to divide (9). This cell cycle arrest is dependent on Chk1. These observations are consistent with the idea that exposure of HU-arrested cells to IR causes DNA
damage that cannot be repaired.
Therefore, our studies show that the question of whether HU induces DNA
damage is irrelevant to the observation that HU fails to induce Chk1
phosphorylation, because Chk1 phosphorylation is unresponsive to DNA
damage in HU-arrested cells. In fact, the observations that initially
led to this study indicate that HU does cause DNA damage. We observed
that there is a Chk1-dependent delay of mitosis as cells recover from
an HU-induced arrest. This phenomenon is observed as cells complete DNA
replication in the presence of HU, as well as when cells complete
replication when HU is removed from the growth medium. In the latter
experiment, the delay of mitosis correlates with a small but
reproducible amount of Chk1 phosphorylation that occurs after HU is
removed. Thus, HU appears to cause some DNA damage that leads to
increased recombination and Chk1 phosphorylation, but the latter effect is normally delayed until DNA replication is complete.
Why suppress Chk1 phosphorylation in HU-arrested cells?
Why
suppress phosphorylation of Chk1 during an HU-induced replication
arrest? If Chk1 is considered in isolation, it is difficult to
understand why phosphorylation of Chk1, which is presumed to indicate
activation of Chk1, would be incompatible with maximizing survival and
minimizing damage during an HU-induced arrest. It is crucially
important to prevent mitosis when DNA is unreplicated. Preventing
mitosis is the sole known purpose of Chk1. This function of Chk1 is
underscored by the observation that Chk1 is essential for an HU-induced
arrest in cds1 cells. Moreover, cds1 chk1 double mutants exhibit enhanced sensitivity to HU relative to the sensitivity of cds1 cells. These considerations suggest that there is no
purpose in specifically preventing Chk1 phosphorylation in HU-arrested cells. Instead, we hypothesize that during S the DNA repair checkpoint signal is suppressed closer to its source, namely, damaged DNA. We
propose that phosphorylation of Chk1 requires processing of DNA damage
and that this activity is incompatible with DNA replication. One may
imagine, for example, that the process of DNA replication yields
certain DNA structures that are potential substrates of repair systems.
Recruitment of repair systems to these structures might lead to Chk1
phosphorylation but interfere with DNA replication. Thus, it is
important that these repair systems be restrained during S phase.
Hence, phosphorylation of Chk1 that is induced by HU or irradiation
during S is suppressed until DNA replication is complete. We propose
that Cds1 keeps these repair systems in check during S phase. Clearly,
Cds1 function is not essential when DNA replication proceeds normally,
but Cds1 activity is crucial when DNA replication is impaired by
treatment of cells with HU.
An alternative model to explain the Cds1-dependent inhibition of Chk1
phosphorylation in HU-arrested cells is that Cds1 and
Chk1 compete for
the same upstream activators. Activation of Cds1
and phosphorylation of
Chk1 are both dependent on checkpoint Rad
proteins; therefore, it is
possible that Cds1 and Chk1 share the
same upstream activators, which
might be present in limiting amounts.
Perhaps Cds1 is better able to
interact with the upstream activators
during S phase, thereby
preventing Chk1 phosphorylation. We do
not favor this model, for the
following reason: replacement of
the genomic copy of
cds1+ with an allele encoding a kinase-inactive
form of Cds1 (Cds1-KD)
does not have a dominant-negative effect on the
HU checkpoint
(
8). In other words,
cds1-KD and
cds1 strains appear identical.
If Cds1-KD interacted with
upstream activators, thereby preventing
interaction of Chk1 with the
upstream activators, the model would
predict that
cds1-KD
cells should behave like
cds1
chk1 cells.
These data
indicate that the protein kinase activity of Cds1 is
required to
prevent HU-induced phosphorylation of Chk1. Thus,
we think that Cds1
does not prevent Chk1 activation by competing
for a common activator.
However, a caveat to this conclusion is
that we cannot exclude the
possibility that Cds1-KD is incapable
of interacting with its upstream
activators.
Is Cds1 required to reduce DNA damage in HU-arrested cells?
Our studies establish that Chk1 phosphorylation is a poor indicator of
DNA damage in HU-arrested cells. Thus, the observation that HU induces
substantial Chk1 phosphorylation in cds1 cells cannot be
used to conclude that Cds1 prevents DNA damage in HU-arrested cells.
So, the question remains, does the absence of Cds1 lead to increased
damage of DNA in HU-arrested cells? The answer is almost certainly
affirmative, for the following reasons. Release from an HU-induced
arrest leads to only a small amount of Chk1 phosphorylation. In
contrast, release from an HU-induced arrest that was accompanied by IR
leads to a large amount of Chk1 phosphorylation. Thus, HU-arrested
cells appear to sustain a small amount of DNA damage (as assayed by
Chk1 phosphorylation) that can be greatly increased by IR. This
increased quantity of Chk1 phosphorylation is comparable to the amount
of Chk1 phosphorylation that is observed in cds1 cells that
are arrested with HU. These observations strongly suggest that Cds1 is
required to minimize DNA damage in HU-arrested cells. This conclusion
is supported by the studies that have shown that following release from
an HU-induced arrest, mitosis occurs much later in cds1
cells relative to that in wild-type cells (8). The delay in
wild-type cells is presumably due to a damage checkpoint that is
enforced by Chk1.
Basis for the S-phase specificity of Cds1 activation.
The
other major aim of this study was to understand why DNA damage induces
activation of Cds1 only during S phase. We found that Cds1-GFP fusion
protein was more highly concentrated in the nuclei of cells that are in
S phase (i.e., septated cells or attached daughters) as compared to
cells that are in G2. Moreover, the Cds1-GFP nuclear signal
increased in cells that were arrested with HU. Thus, enhanced nuclear
localization of Cds1 correlates with its activation in S phase by HU
treatment or DNA damage. How is Cds1 localization regulated? Cds1
contains one putative NLS and one forkhead-associated (FHA) domain
(22). These two motifs are found in a range of nuclear
proteins. The NLS-dependent nuclear localization is an active mechanism
(32). Perhaps the function of the putative NLS of Cds1 is
regulated during the cell cycle. A homologous FHA domain is found in
Rad53p, the Saccharomyces cerevisiae homolog of Cds1
(22). This domain might be important for regulating the
localization of Cds1. However, nuclear localization of Cds1 is not
sufficient for its activation, because the Cds1-NLS-GFP construct,
which was constitutively localized in the nucleus, behaved otherwise
like Cds1-GFP.
One of the proposed functions of Cds1 is to prevent the collapse of the
DNA replication fork during DNA replication block
(
24). This
idea suggests a direct interaction between Cds1 and
the replication
machinery. Thus, the specific nuclear accumulation
of Cds1 during S
phase may depend on association with a DNA structure
or protein complex
that is assembled during DNA replication. Another
proposed function of
Cds1 is to prevent mitosis by phosphorylating
Wee1 (
7). Wee1
appears to be localized in the nucleus (
1,
47). Thus,
colocalization of Cds1 and Wee1 in the nucleus is
consistent with the
model in which Cds1 regulates Wee1. Cds1 activation
is dependent on
Rad3, a kinase homologous to the human ATM protein.
It is possible that
Cds1 is a direct substrate of Rad3. The intracellular
localization of
Rad3 is unknown, but ATM is associated with chromatin
(
14).
Thus, the nuclear localization of Cds1 might be necessary
for
interaction with Rad3 or other proteins that might activate
Cds1.
 |
ACKNOWLEDGMENTS |
We thank N. Rhind for his advice and helpful discussion. We thank
also F. Gaits, C. McGowan, and the Scripps Cell Cycle Groups for their
support and encouragement.
J.-M.B. was supported by the Association pour la Recherche contre le
Cancer. M.N.B. was supported by an NRSA Postdoctoral Fellowship from
the National Institutes of Health. This work was funded by a National
Institutes of Health grant awarded to P.R.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Molecular Biology MB3, 10550 North Torrey Pines Rd., La Jolla, CA
92037. Phone: (619) 784-8273. Fax: (619) 784-2265. E-mail:
prussell{at}scripps.edu.
 |
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