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Molecular and Cellular Biology, August 1999, p. 5504-5511, Vol. 19, No. 8
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Histone Deacetylase 1 Can Repress Transcription by Binding
to Sp1
Angelika
Doetzlhofer,1
Hans
Rotheneder,1
Gerda
Lagger,1
Manfred
Koranda,1
Vladislav
Kurtev,1
Gerald
Brosch,2
Erhard
Wintersberger,1 and
Christian
Seiser1,*
Institute of Molecular Biology, Vienna
Biocenter, University of Vienna, Vienna,1 and
Institute of Microbiology, University of Innsbruck, Medical
School, Innsbruck,2 Austria
Received 6 November 1998/Returned for modification 17 December
1998/Accepted 27 April 1999
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ABSTRACT |
The members of the Sp1 transcription factor family can act as both
negative and positive regulators of gene expression. Here we show that
Sp1 can be a target for histone deacetylase 1 (HDAC1)-mediated transcriptional repression. The histone deacetylase inhibitor trichostatin A activates the chromosomally integrated murine thymidine kinase promoter in an Sp1-dependent manner. Coimmunoprecipitation experiments with Swiss 3T3 fibroblasts and 293 cells demonstrate that
Sp1 and HDAC1 can be part of the same complex. The interaction between
Sp1 and HDAC1 is direct and requires the carboxy-terminal domain of
Sp1. Previously we have shown that the C terminus of Sp1 is necessary
for the interaction with the transcription factor E2F1 (J. Karlseder,
H. Rotheneder, and E. Wintersberger, Mol. Cell. Biol. 16:1659-1667,
1996). Coexpression of E2F1 interferes with HDAC1 binding to Sp1 and
abolishes Sp1-mediated transcriptional repression. Our results indicate
that one component of Sp1-dependent gene regulation involves
competition between the transcriptional repressor HDAC1 and the
transactivating factor E2F1.
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INTRODUCTION |
The chromatin of eukaryotic cells is
organized in nucleosomes. This organization allows the efficient
packaging of chromosomal DNA into the nucleus but limits the access of
high-molecular-weight protein complexes of the
transcription machinery. At least two different mechanisms enable
the eukaryotic cell to relieve nucleosomal repression: the
chromatin-remodeling complexes (reviewed in references 55 and 57) and reversible histone
acetylation. Two recent reports indicate a direct link between these
two activities (60, 67). Posttranslational acetylation on
conserved lysine residues within the N-terminal regions of nucleosomal
histones is assumed to lead to a reduced attraction between chromosomal
DNA and histone tails and changed interactions with neighboring
nucleosomes or other nonhistone proteins. The resulting local chromatin
decondensation increases the accessibility of particular DNA regions
for RNA polymerase complexes. Consistent with this idea,
transcriptionally active chromatin correlates with histone
hyperacetylation (reviewed in references 18, 30, 47, 49,
61, and 62). This model predicts that
histone acetyltransferases would promote transcription, while histone
deacetylases (HDACs) should act as repressors. In accordance with this
model, several transcriptional adapters and coactivators, such as GCN5
(8, 31), p300/CBP (4, 46), TAFII250
(40), SRC-1 (54), and ACTR (10), have
been classified as histone acetyltransferases. Five HDACs have been
identified in mammalian cells (12, 14, 56, 58, 63, 64).
Three of them, HDAC1, HDAC2, and HDAC3, have significant homology to yeast Rpd3 (44, 50, 59). HDAC4 and HDAC5 belong to the
histone deacetylase A (HDA) family (9, 58). HDAC1 and HDAC2
are found in high-molecular-weight complexes associated with adapter
proteins like SIN3, SAP18, and SAP30 and nuclear corepressors like
N-CoR, SMRT, and SUN-CoR (2, 24, 32, 42, 65, 66). Recently it was demonstrated that several mammalian transcription factors, such
as Mad (21, 24, 32, 52), YY1 (64),
hormone-dependent nuclear receptors (24, 42), MeCP2
(26, 43), CBF (27), retinoblastoma protein (Rb)
(7, 38, 39), and related pocket proteins (16),
can repress transcription by recruiting HDACs to specific promoters. In
addition, the aberrant recruitment of HDACs by PLZF, PML, and ETO
fusion proteins can interfere with the differentiation of hematopoietic
precursor cells in acute promyelocytic leukemia (13, 17, 19,
35).
In this study we investigated the potential function of HDACs as
transcriptional repressors during the growth arrest of mammalian cells.
Using the S-phase-specific mouse thymidine kinase (TK) promoter as a
model system, we show that HDAC1 can mediate transcriptional repression
via the Sp1 binding site. HDAC1 is associated with Sp1 and binds
directly to the C-terminal part of Sp1 that was previously identified
as interacting domain for E2F1 (28). Sp1 and E2F1 cooperate
in the activation of S-phase-specific promoters (28, 36).
Here we show that E2F1 but not E2F4 can compete with HDAC1 binding to
Sp1, thereby relieving HDAC1-mediated repression of the TK promoter.
Finally, we present a model of how transcription factors and
histone-modifying enzymes could regulate the activity of specific
promoters at the G1/S boundary of the cell cycle.
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MATERIALS AND METHODS |
Cell culture and transfection.
Swiss 3T3 fibroblasts and
human 293 cells were grown in Dulbecco's modified Eagle's medium
supplemented with antibiotics and 10% fetal calf serum. Swiss 3T3
cells were stably transfected by Polybrene-assisted gene transfer
(3). Briefly, 3T3 fibroblasts were seeded at 106
cells per 100-mm-diameter dish. The culture medium was replaced with 4 ml of a cocktail consisting of 5 µg of Polybrene per ml and 50 ng of
plasmid DNA per ml in fresh medium. After 16 to 20 h, the mixture
was removed and the cells were treated with 15% dimethyl sulfoxide
(DMSO) in growth medium for 4 to 5 min. The cells were rinsed twice
with growth medium and returned to the incubator for 24 h before
Geneticin-containing medium was added. Geneticin-resistant clones were
pooled for further investigations. The results described in this study
are representative of those from experiments with both single clones
and mixed populations. Transient transfection of 293 cells was carried
out by calcium phosphate coprecipitation as described previously
(28). Swiss 3T3 cells were growth arrested by reducing the
serum concentration in the culture medium to 0.2% for 72 h and
restimulated to enter the cell cycle with fresh medium containing 20%
fetal calf serum. Trichostatin A (TSA) (Wako) was dissolved in DMSO and
added to the culture medium at a final concentration of 80 to 100 ng/ml. A corresponding volume of DMSO was added to the control cells. Growth arrest and stimulation were routinely controlled by
fluorescence-activated cell sorter analysis with a Partec PAS-II sorter.
Coimmunoprecipitations.
Whole-cell extracts were prepared as
described previously (1), and equal amounts (500 µg) were
incubated in 200 µl of extraction buffer (20 mM Tris-HCl [pH 8.0],
100 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40, 1 mM phenylmethylsulfonyl
fluoride, 2 mM dithiothreitol, Boehringer Complete Protease Inhibitor
Cocktail) with 3 to 5 µl of the respective antibody for 1 h at
4°C. After addition of 20 µl of a protein A-Sepharose bead
suspension (10%, vol/vol; Pharmacia), the mixture was further
incubated with gentle shaking for 12 h at 4°C. After three
washes with extraction buffer, the beads were resuspended in 50 µl of
extraction buffer, and 30-µl aliquots were examined for protein
expression on Western blots. The remaining 20 µl was assayed for HDAC
activity (see below).
The following antibodies were used in this study. Rb was
immunoprecipitated and detected with C15 (Santa Cruz). Sp1 was
immunoprecipitated and detected with a polyclonal rabbit antiserum
raised against the full-length protein, generously provided by G. Suske
(20). HDAC1 was immunoprecipitated and visualized on Western
blots with a polyclonal rabbit antibody raised against a recombinant
mouse HDAC1 polypeptide (5) (Upstate Biotechnology). Sin3A
and Sin3B were precipitated with AK-11 (Santa Cruz) and AK-12 (Santa
Cruz), respectively. Hemagglutinin (HA)-tagged and Myc-tagged proteins were immunoprecipitated and detected with the monoclonal sera for the
HA epitope (12CA5 and 16B12) and for the Myc epitope (9E10) (15). Glutathione S-transferase (GST) fusion
proteins were detected with a polyclonal rabbit serum that recognizes
specifically the GST epitope (generously provided by K. Kuchler,
Institute of Molecular Genetics, University of Vienna).
HDAC assays and luciferase reporter assays.
HDAC assays were
done as described previously (5, 33). To measure enzymatic
HDAC activity, equal amounts (10 µg of whole-cell extract) of protein
or 20 µl of immunoprecipitated proteins was incubated with 10 µl of
[3H]acetate-labeled chicken erythrocyte histones in a
total volume of 50 µl for 1 h at 30°C. The reaction was
stopped by addition of 36 µl of 1 N HCl-0.4 M acetate and 800 µl
of ethyl acetate. After centrifugation at 8,400 × g
for 5 min, the radioactivity in a 600-µl aliquot of the organic phase
was counted in 3 ml of liquid scintillation cocktail. For luciferase
reporter assays, cells were grown in six-well plates and lysed 48 h after transfection in luciferase lysis buffer (100 mM K-phosphate
[pH 7.8], 0.2% Triton X-100). Luciferase activity and
-galactosidase activity (as a control for transfection efficiency)
were assayed in parallel by using the Dual Light Chemoluminiscent
Reporter Gene Assay System (TROPIX, Bedford, Mass.). An aliquot of each
extract was analyzed on Western blots for the expression levels of
cotransfected proteins.
GST pull-down assays.
Recombinant proteins were expressed in
and purified from Escherichia coli BL21 as described
previously (28). Beads coated with GST fusion proteins (2 µg) were incubated in binding buffer (20 mM HEPES [pH 7.9], 1 mM
MgCl2, 40 mM KCl, 0.1 mM EDTA, 0.1% Nonidet P-40) with 500 µg of whole-cell extract, radiochemical amounts of in
vitro-translated proteins, or 2 footprint units (FPU) of purified human
Sp1 (Promega) for 2 h at 4°C. After three washes with GST wash
buffer (100 mM KCl, 20 mM Tris-HCl [pH 8.0], 5 mM MgCl2,
0.1 mM EDTA, 10% glycerol, 0.5% Nonidet P-40, 0.5 mM dithiothreitol),
bound proteins were eluted by boiling in sodium dodecyl
sulfate-polyacrylamide gel electrophoresis loading buffer, resolved by
electrophoresis, and visualized by Western blotting. In vitro
expression of radiolabeled proteins was performed in reticulocyte
extracts (Quick Coupled Transcription/Translation system; Promega) in
the presence of [35S]methionine. Labeled proteins were
resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis,
and gels were dried and exposed to X-ray films at
70°C. The signals
of labeled proteins were quantified with a Molecular Dynamics Storm 840 Scanner.
Plasmids.
To generate the selectable luciferase reporter
plasmid pGL2neo, the neomycin resistance gene from pSV2neo (Clontech)
was inserted into the BamHI site of the pGL2 vector
(Promega). The EcoRI/NheI fragment encompassing
the murine TK promoter was cloned into the pGL2neo vector (pTK-luc).
To obtain pTK-Sp1mut-luc and pTK-E2Fmut-luc, the corresponding
EcoRI/NheI fragments were excised from
pTKEcoSp1mut-ATG-CAT and pTKEcoE2Fmut-ATG-CAT (28)
and cloned into pGL2neo. To clone pCIneoHDAC1, the
EcoRI/PstI mouse HDAC1 cDNA fragment
(5) containing the entire open reading frame was cloned into
Bluescript pKS. The mammalian expression plasmid pCIneoHDAC1myc
encoding an epitope-tagged version of HDAC1 was described previously
(5). The insert was excised by EcoRI and
NotI digestion and ligated into pCIneo. The parental plasmid
pCIneo-HA was created by inserting a double-stranded oligodeoxynucleotide encoding the peptide MAYPYDVPDYA into the XhoI-cut vector pCIneo (Promega). To clone pCIneo-HA-Sp1,
the Sp1 cDNA was inserted into XbaI-cut pCIneo-HA.
Expression vectors encoding HA-Sp1 mutants were generated by cutting
pCIneo-HA-Sp1 with PpuMI and SmaI
[pCIneo-HA-Sp1(1-293)], with SmaI and BamHI (partially) [pCIneo-HA-Sp1(1-621)], with SmaI and
XmnI (partially) [pCIneo-HA-Sp1(1-668)], or with
BamHI [pCIneo-HA-Sp1(622-788)] and religating the plasmid.
The GST-Sp1 constructs have been described previously (28).
GST-HDAC1 was generated by inserting the murine HDAC1-coding sequence
into BamHI- and EcoRI-cut pGEX-2TK. The reporter
plasmids pSp1-luc and pmtSp1-luc were kindly provided by H. Nomura
(53).
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RESULTS |
TSA-dependent induction of the murine TK promoter in
G0-phase cells is linked to the Sp1 site.
We have
previously shown that the mouse TK gene is transcriptionally regulated
by E2F and Sp1 (28). Binding of both proteins is essential
for activation of the TK promoter during the S phase of the cell cycle.
The interaction of the DNA-binding proteins is direct (28)
and was shown to be strongly enhanced during the late G1
phase of the cell cycle (36). Given that the TK promoter is
inactive in G0-phase cells, we investigated whether HDAC
activity is necessary for this repression. Figure
1 shows that a stably integrated TK
luciferase reporter gene can be activated in serum-starved Swiss 3T3
cells by the HDAC inhibitor TSA. The activity of the TK promoter was
ninefold induced by TSA, compared to a sevenfold stimulation by 20%
fetal calf serum. Interestingly, the presence of an intact Sp1 binding
site was required for this effect, while the binding of E2F was
dispensable for the activating effect of TSA. Both mutated promoters
show significantly lower affinity than the wild-type promoter due to
loss of the cooperativity between the two transcription factors
(28). The promoter construct with a mutated Sp1 site and an
intact E2F binding site showed a less-than-twofold response to TSA but
was still responsive to serum. Mutation of the E2F site, on the other
hand, led to nearly complete loss of the growth factor response but had
no effect on the inducibility by the HDAC inhibitor. A reporter
construct with mutations in both binding sites was not responsive to
TSA (13a).

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FIG. 1.
Sp1 binding sites can mediate transcriptional activation
by TSA. (A) The Sp1 binding site is required for activation of the
murine TK promoter by TSA in resting Swiss 3T3 cells. Serum-deprived
cells containing the chromosomally integrated luciferase reporter genes
pTK-luc, pTK-E2Fmut-luc, and pTK-Sp1mut-luc were incubated for 20 h either with TSA (80 ng/ml) or fresh medium supplemented with 20%
fetal calf serum. Data are means and standard deviations from three
independent experiments. rel., relative. (B) 293 cells were transiently
transfected with a reporter plasmid containing three Sp1 consensus
sites (pSp1-luc) or a construct bearing three mutated Sp1 sites
(pmtSp1-luc) together with the control vector pCMV Gal. In each
transfection experiment half of the cells were treated with TSA (100 ng/ml) for 20 h. Luciferase activities of untreated cells (white
bars) and TSA-treated cells (gray bars) are depicted relative to the
respective -galactosidase activities. (C) pSp1-luc was transfected
together with pCIneo, pCIneoHA-Sp1wt, and pCIneoHA-Sp1wt in combination
with increasing amounts of pCIneomyc-HDAC1 (0.25, 0.75, and 1.25 µg).
Luciferase activities are depicted relative to the respective
-galactosidase activities. Expression levels of epitope-tagged Sp1
and HDAC1 were analyzed on Western blots with HA-specific and
Myc-specific antibodies.
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To demonstrate that the TSA effect is independent of the presence of
other transcription factor binding sites, we examined
a promoter that
is driven by three Sp1 consensus sites only. A
luciferase reporter
construct under control of this promoter (pSp1-luc)
was previously
shown to be strongly induced by TSA in the p53-deficient
human cell
line MG63 (
53). When expressed in 293 cells, the
reporter
had considerable activity that was more than sixfold
enhanced upon
treatment with 100 ng of TSA per ml (Fig.
1B). A
mutant construct,
pmtSp1-luc, with mutated Sp1 consensus sites
had significantly reduced
luciferase activity that was only weakly
responsive (twofold) to TSA.
Coexpression of HA-tagged Sp1 with
pSp1-luc led to an increase in
promoter activity, confirming the
role of Sp1 as a transcriptional
activator for this promoter.
Next, we tested whether HDAC1 can affect
the reporter activity
in the presence of Sp1. Cotransfection of
increasing amounts of
mouse HDAC1 (
5) abolished the
activation by Sp1. Importantly,
coexpression of HDAC1 did not reduce
the expression levels of
Sp1 (Fig.
1C). In contrast, pmtSp1-luc showed
no response to coexpression
of either Sp1 or HDAC1 (data not shown).
These results suggest
that Sp1 and/or other members of the Sp1 family
not only are transcriptional
activators but also are targets for
HDACs.
Sp1 interacts with HDAC1 in vivo via its C-terminal domain.
To
analyze whether Sp1 interacts with HDACs, we immunoprecipitated Sp1
from extracts of resting Swiss 3T3 cells and measured the associated
HDAC activity. As shown in Fig. 2A, Sp1
is associated with significant HDAC activity that is comparable to that
found in the coimmunoprecipitation with known HDAC-interacting factors such as Rb, Sin3A, and Sin3B. The immunoprecipitate obtained with the
Sp1-specific antibody contained HDAC1, whereas no HDAC1 was observed in
an immunoprecipitate obtained with an irrelevant antibody (anti-HA)
(Fig. 2B). The differences between associated HDAC activities and
amounts of HDAC1 coimmunoprecipitated with Rb and Sp1 may be due to the
presence of other HDACs in the respective complexes. For instance,
HDAC1 and HDAC2 were recently shown to interact with each other
(22), and both deacetylases are present in Sin3-containing complexes (32, 66, 68). In summary, these data indicate that
Sp1 is associated with HDAC1 in vivo.

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FIG. 2.
Sp1 interacts with HDAC1 in vivo. Whole-cell extracts
were immunoprecipitated with anti-Sp1 antibody (Pep2), an irrelevant
control antibody (anti-HA), anti-Rb antibody (C-15), anti-Sin3A
antibody (AK-11), and anti-Sin3B antibody (AK-12). (A) Sp1 associates
with HDAC activity in resting Swiss 3T3 cells similarly to the known
HDAC1-binding proteins Rb, Sin3A, and Sin3B. HDAC activity was measured
as described previously (5). (B) HDAC1 coimmunoprecipitates
with Sp1. HDAC1 was detected by Western blot analysis with the
anti-HDAC1 antibody.
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When HDAC1 and HA-tagged Sp1 were coexpressed in mammalian cells, an
interaction between the two proteins was observed by
immunoprecipitation with the HA-specific antibody and the HDAC1
antiserum (Fig.
3A and B). The
association of Sp1 with HDAC1 is
dependent on the presence of the
carboxy-terminal domain of Sp1,
since removal of the first 621 amino
acids had no effect on HDAC1
binding, while Sp1 mutants containing
amino acids 1 to 293 or
1 to 621 failed to recruit HDAC1 (Fig.
3A and
B). An Sp1 protein
encompassing amino acids 1 to 668 also had the
capacity to bind
HDAC1. The strong interaction of Sp1(622-788) with
HDAC1 is at
least in part due to a significantly higher expression of
this
protein than of the other Sp1 polypeptides (Fig.
3C). In addition,
the HDAC1 binding domain might be more accessible in this deletion
mutant.

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FIG. 3.
The interaction between Sp1 and HDAC1 requires the
C-terminal domain of Sp1. (A) The C-terminal domain (amino acids 622 to
788) of Sp1 is essential and sufficient for HDAC1-Sp1 interaction.
Cells were transfected with pCIneoHDAC1 and the Sp1-encoding plasmid
pCIneoHA-Sp1wt, pCIneoHA-Sp1(1-293), pCIneoHA-Sp1(1-621),
pCIneoHA-Sp1(1-668), or pCIneoHA-Sp1(622-788). Whole-cell extracts
were immunoprecipitated (IP) with anti-HA antibody, and HDAC1 was
visualized by Western blot analysis with the anti-HDAC1 antibody. An
extract from cells transfected with only pCIneoHDAC1 was included as a
control. A faint unspecific band from a cross-reacting protein
(asterisk) was also visible in the immunoprecipitation from
untransfected cells. (B) HA-tagged Sp1 coimmunoprecipitates with HDAC1
from extracts of transfected 293 cells. Cells were transfected with
pCIneoHDAC1 and the Sp1-encoding plasmid pCIneoHA-Sp1wt,
pCIneoHA-Sp1(1-293), pCIneoHA-Sp1(1-621), or pCIneoHA-Sp1(1-668).
Whole-cell extracts were precipitated with the anti-HDAC1 antibody, and
HA-Sp1 was visualized by Western blot analysis with the anti-HA
antibody. (C) Input extracts were analyzed on a Western blot for
expression levels of epitope-tagged Sp1 polypeptides (detected with
the anti-HA antibody) and HDAC1 (detected with the anti-HDAC1
antibody).
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Direct interaction between HDAC1 and Sp1.
The HDAC1-Sp1
interaction was also observed in GST pull-down experiments with
extracts from Swiss 3T3 cells. GST-Sp1(622-788) can complex with HDAC1
in extracts from resting and S-phase 3T3 fibroblasts, while GST or
GST-Sp1(1-621) shows no interaction (Fig.
4A). While HDAC1 was expressed at a
higher level in replicating cells, the affinity to Sp1 seemed to be
slightly reduced. Similarly, a moderate reduction in the in
vivo interaction of HDAC1 with Sp1 in serum-stimulated Swiss
3T3 fibroblasts was observed in immunoprecipitation experiments
with S-phase extracts prepared from untransfected cells (Fig.
4B). To investigate whether the interaction of Sp1 and HDAC1 is
direct, GST-HDAC1 was incubated with purified Sp1. As a negative
control, E2F4, which, in contrast to E2F1, lacks the Sp1-interacting
domain (28), was included in this experiment. As shown in
Fig. 4C, in the absence of additional proteins, GST-HDAC1 could bind to
Sp1 to a similar extent as GST-E2F1, while GST-E2F4 showed no
interaction.

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FIG. 4.
Sp1 interacts directly with HDAC1. (A) GST-Sp1(622-788)
precipitates HDAC1 from extracts prepared from resting and
serum-stimulated Swiss 3T3 cells. HDAC1 was detected by Western blot
analysis with the anti-HDAC1 antibody. GST and GST-Sp1(1-621) failed to
interact with HDAC1. Input extracts (8%) and pull-down assays without
extract were included as controls. GST fusion proteins were detected on
the same blot with a GST-specific antibody. The GST proteins (without
the Sp1 portion) running in the front of the gel are not shown. (B)
Sp1-HDAC1 interaction is slightly reduced in S-phase cells. Sp1 was
immunoprecipitated (IP) with anti-Sp1 antibody (Pep2) from extracts
prepared from G0- and S-phase Swiss 3T3 cells.
Immunoprecipitated Sp1 and coimmunoprecipitated HDAC1 were visualized
on the Western blot with the anti-Sp1 antibody and the anti-HDAC1
antibody, respectively. (C) GST-HDAC1 interacts with purified Sp1 (4 FPU; Promega). Sp1 was visualized by Western blot analysis with the
anti-Sp1 antibody. GST-E2F4 failed to interact with recombinant Sp1,
while E2F1 binds to Sp1, as previously shown (28). Purified
Sp1 (2 FPU) was loaded as a control.
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E2F1 can abolish HDAC1 binding to Sp1 and HDAC1-dependent
transcriptional repression.
The C-terminal domain of Sp1 that is
sufficient to bind HDAC1 was previously shown to interact with the
transcription factor E2F1 (28). E2F1 plays an important role
in the activation of numerous growth- and cell cycle-regulated
promoters. We therefore asked whether E2F1 could influence the
interaction between Sp1 and HDAC1. Coexpression of increasing amounts
of E2F1 with Sp1 and HDAC1 abolished the interaction between the two
proteins as revealed by immunoprecipitations with the HA antibody
(for epitope-tagged Sp1) or the HDAC1 antiserum (Fig.
5). Epitope-tagged Sp1 appears on Western blots as a doublet (Fig. 1C and 5) that most probably represents differently modified forms of the transcription factor. Both
forms of HA-Sp1 are competed by E2F1. To exclude an indirect effect of
E2F1 on the cytomegalovirus promoter that drives the Sp1 and HDAC1
expression constructs, we performed in vitro competition experiments.
In pilot experiments the limiting amount of GST-Sp1(622-788) that is
still able to bind in vitro-translated radiolabeled HDAC1 was
determined (data not shown). Increasing amounts of in vitro-translated E2F1(1-122) were added simultaneously with constant amounts of HDAC1.
The E2F1(1-122) protein still contains the Sp1 interaction domain and
is easily distinguishable in size from HDAC1. As shown in Fig.
6, addition of E2F1 led to a reduction in
the interaction between Sp1 and HDAC1. In contrast, E2F4 that lacks the
Sp1 binding domain failed to compete HDAC1 binding to Sp1 (not shown).

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FIG. 5.
E2F1 competes Sp1-associated HDAC1. 293 cells were
transfected with pCIneoHDAC1, pCIneoHA-Sp1wt, and different amounts of
pCIneoE2F1 (0, 1, 3, and 9 µg). Extracts from untransfected cells
were included as a control. (A) Concentration-dependent repression of
the HDAC1-Sp1 interaction by E2F1. HDAC1 was immunoprecipitated (IP)
from whole-cell extracts prepared from transfected 293 cells, and
coprecipitated HA-tagged Sp1 was detected by Western blot analysis with
the anti-HA antibody. (B) E2F1 abolishes binding of HDAC1 to Sp1.
HA-tagged Sp1 was precipitated from whole-cell extracts prepared from
transfected 293 cells, and HDAC1 was detected in immunoprecipitates by
Western blot analysis with the anti-HDAC1 antibody. (C) Expression
levels of HA-Sp1, HDAC1, and E2F1 in input extracts were visualized by
Western blot analysis with the anti-E2F1 antibody, the anti-HA
antibody, and the anti-HDAC1 antibody.
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FIG. 6.
The amino-terminal domain of E2F1 can directly compete
HDAC1 binding to Sp1. (A) GST-Sp1(622-788) was incubated with constant
amounts of in vitro-translated radiolabeled HDAC1 (3 µl) in the
absence or presence of increasing amounts (0.5, 1, 2, 4, and 6 µl) of
in vitro-translated radiolabeled E2F1(1-122). As a control, 6 µl
of radiolabeled E2F1(1-122) was incubated with GST-Sp1(622-788) in the
absence of HDAC1 (lane 7). (B) Amounts of HDAC1 (gray bars) and
E2F-1(1-122) (white bars) bound to GST-Sp1(622-788) were quantified on
a Molecular Dynamics Storm 840 Scanner and are shown relative to the
signal in the absence of the other labeled protein [bar 1 for HDAC1
and bar 7 for E2F-1(1-122)]. Results are from one typical experiment
of three.
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Consistent with the ability of Sp1 to recruit HDAC1, coexpression of
both proteins with the TK luciferase reporter resulted
in considerable
repression of transcriptional activity (Fig.
7,
bar 6). HDAC1 alone (bar 2) also had a
significant, although less
pronounced, repressive effect, while
Sp1 expression (bar 4) was
without major consequence for the promoter
activity. Given that
Sp1 can tether HDAC1 to the TK promoter, we
examined whether E2F1
affects the transcriptional repression mediated
by these proteins.
E2F-1 together with Sp1 (Fig.
7, bar 5) slightly
stimulated the
TK promoter. In combination with Sp1 and HDAC1, E2F1
abrogated
the repressing effect of HDAC1 and Sp1 (Fig.
7, bar 7),
suggesting
that the competition between HDAC1 and E2F1 for binding to
Sp1
plays a major role in the regulation of the murine TK promoter.

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FIG. 7.
E2F1 abolishes HDAC1-mediated transcriptional
repression. Luciferase activity in whole-cell extracts prepared from
transfected 293 cells was measured. Cells were transfected with pTK-luc
and pCMV Gal (as a control) together with pCIneo (vector control),
pCIneoHDAC1myc, pCIneoHA-E2F1, pCIneoHA-Sp1wt, pCIneoHA-Sp1wt
plus pCIneoHA-E2F1, pCIneomyc-HDAC1 plus pCIneoHA-Sp1wt, and
pCIneomyc-HDAC1 in combination with pCIneoHA-Sp1wt and pCIneoHA-E2F1.
Data are means and standard deviations from three independent
experiments. The expression levels of HA-Sp1, HA-E2F1, and Myc-tagged
HDAC1 were monitored by Western blot analysis with the HA antibody for
Sp1 and E2F1 and the Myc-specific antibody for HDAC1.
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DISCUSSION |
Reversible acetylation of histones and corresponding changes
of chromatin structure are substantial elements of gene
regulation. Many histone acetyltransferases and HDACs are
capable of interacting with constituents of the transcription
apparatus, thereby causing promoter-specific alterations of
chromatin. We have been interested in the growth control of gene
expression, with the S-phase-specific TK gene as a model.
Promoters of growth-regulated genes often carry binding sites for Sp1
and E2F. Depending on the promoter, members of the E2F family can
function in one of two ways. First, together with their interacting
pocket protein (Rb, p107, or p130), they can inhibit promoter activity;
phosphorylation of the pocket protein then causes rapid dissociation of
the pocket protein-E2F complexes. This is likely the case for E2F4 and
E2F5 and the corresonding pocket proteins p130 and p107. The second
type of regulation involves E2F1, -2, or -3. These E2F proteins,
together with a pocket protein, can inhibit transcription, but upon
release of the phosphorylated pocket protein they can also act as
positive transcription factors. The murine TK promoter and the promoter
of the dihydrofolate reductase (DHFR) gene are probably regulated in
this way. In both cases, there appears to be a strong interaction
between Sp transcription factors and E2F in which Sp1, Sp3 and E2F1,
-2, or -3 are implicated. Mutation of the binding site for E2F in this
case not only leads to deregulation of the promoter but causes nearly
complete inactivation. Down-regulation of promoters by the E2F-pocket
protein complex is thought to entail deacetylation of histones via
pocket protein-HDAC interaction. In contrast to E2F, Sp1 was so far
seen primarily as a positive transcription factor. Our study
demonstrates that Sp1 can also be targeted by the repressor HDAC1.
Binding sites for Sp1 are very common in many promoters, and several
Sp1 proteins can bind to these GC-rich motifs, with various
consequences. Of these proteins, Sp1 and Sp3 are the most prevalent
ones found in mammalian cells. In fact, we observed that Sp3 binds
HDAC1 just like Sp1 (49a). The interaction of Sp1 with HDAC1
requires the part of Sp1 which was previously shown to be implicated in the binding to E2F. Accordingly, HDAC1 was found to compete with E2F1
for binding to Sp1. This competition may play an important role in the
regulation of promoters, which present closely spaced binding sites for
Sp1 and E2F.
A model for the growth control of the murine TK promoter which
incorporates the currently known interactions is shown in Fig. 8. During growth arrest, the E2F complex
carries p130 most likely bound to E2F4. As E2F4 lacks the sequence
required for interaction with Sp1, the nearby Sp1 is able to bind
HDAC1. Thus, both Sp1 and p130 recruit HDAC1, thereby causing full
inactivation of the promoter. The fact that a mutant TK promoter
lacking the Sp1 binding site is insensitive to TSA is possibly due to
the absence of E2F1 in resting fibroblasts. E2F1 was recently shown to
be necessary for the effect of TSA on promoters repressed by the
Rb-HDAC1 complex (39). After growth stimulation, p130 is
phosphorylated, the E2F pocket protein complex dissociates, and E2F4
relocalizes to the cytoplasm (37, 41) or becomes degraded
(23). The Sp1-HDAC1 complex keeps the promoter inactive
until, in mid-G1, E2F1, -2, and -3 are synthesized, which
can bind to the free E2F motif, thereby displacing HDAC1 from the C
terminus of Sp1. Notably, E2F1, -2, or -3 itself interacts with RB,
which again recruits HDAC1 or HDAC2, thus keeping the promoter inactive
until mid-G1, when the pocket protein is phosphorylated.
Pocket protein phosphorylation results in its removal from E2F and in
the activation of the promoter by the combined activities of Sp1 and
E2F. This model could explain the complete shutoff of the mouse TK
promoter in growth-arrested cells and would allow for a stepwise
reorganization of promoter occupancy during G1, culminating
in promoter activation at the G1/S border of the cell
cycle. The model is in agreement with recent reports on the regulation
of the DHFR-promoter (25, 36, 45, 51). Those studies
conclude that Sp1, in addition to E2F, plays an active role in the
growth control of the DHFR promoter, although they do not provide a
mechanism for such a role.

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|
FIG. 8.
A model for the roles of Sp1, E2F, and HDAC1 in
repression and activation of S-phase-specific promoters. (Top) During
the G0 phase, heterodimers consisting of E2F4 or E2F5
and DRTF binding protein recruit pocket proteins such as p130 to the
E2F binding site of the murine TK promoter. The pocket proteins are
associated with HDAC1. Simultaneously, the Sp1 binding site is occupied
by Sp1 or Sp3 with HDAC1 bound to its C terminus. (Bottom) At the
G1/S boundary, the repressing E2F4/5-p130-HDAC1 complex is
replaced by E2F1. HDAC1 is displaced by E2F1 at the C terminus of Sp1,
and transcription of the TK gene is subsequently activated.
|
|
Since other transcription factors (11, 29, 34, 48) also
interact with the C-terminal domain of Sp1, competition between transcriptional regulators and HDACs might be a more general way to
regulate gene expression via reversible chromatin modification. The
recent finding that the C terminus of Sp1 is phosphorylated during the
G0/G1 transition could indicate that the
interaction between Sp1 as a target and HDAC1 and the transcription
factors as competing binding proteins is in addition modulated by cell cycle phase-specific modification of Sp1 (6).
 |
ACKNOWLEDGMENTS |
We thank J. Taplick, E. Ogris, S. Schuechner, K. Kuchler, M. Cotten, and W. Krek for useful discussions, K. Kuchler for the GST
antiserum, H. Nomura for the pSp1-luc reporter plasmids, G. Suske for
the Sp1 antiserum, and H. Khier for the affinity-purified HDAC1 antiserum.
This work was supported by the Austrian FWF (grants P11179-GEN and
P13068-GEN to C.S. and grants P10873-GEN and P13031-MOB to E.W.) and
the Austrian National Bank (grant 6123 to C.S.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institute of
Molecular Biology, University of Vienna, Vienna Biocenter, Dr.
Bohr-Gasse 9, A-1030 Vienna, Austria. Phone: 431 4277 61770. Fax: 431 4277 9617. E-mail: cs{at}mol.univie.ac.at.
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