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Molecular and Cellular Biology, May 2000, p. 3616-3625, Vol. 20, No. 10
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
UV-Induced Stabilization of c-fos and
Other Short-Lived mRNAs
Christine
Blattner,1,
Patricia
Kannouche,2,
Margarethe
Litfin,1
Klaus
Bender,1,§
Hans J.
Rahmsdorf,1
Jaime F.
Angulo,2 and
Peter
Herrlich1,3,*
Forschungszentrum Karlsruhe, Institute of
Toxicology and Genetics,1 and University
of Karlsruhe, Institute of Genetics,3 76021 Karlsruhe, Germany, and Laboratoire de Génétique de
la Radiosensibilité, Département de Radiobiologie et de
Radiopathologie, Direction des Sciences du Vivant, Commissariat a
l'Energie Atomique, CEFAR, 92265 Fontenay-aux-Roses,
France2
Received 20 August 1999/Returned for modification 18 October
1999/Accepted 28 February 2000
 |
ABSTRACT |
Irradiation of cells with short-wavelength ultraviolet light (UVC)
changes the program of gene expression, in part within less than 15 min. As one of the immediate-early genes in response to UV, expression
of the oncogene c-fos is upregulated. This immediate induction is regulated at the transcriptional level and is transient in
character, due to the autocatalyzed shutoff of transcription and the
rapid turnover of c-fos mRNA. In an experiment analyzing the kinetics of c-fos mRNA expression in murine fibroblasts
irradiated with UVC, we found that, in addition to the initial
transient induction, c-fos mRNA accumulated in a second
wave starting at 4 to 5 h after irradiation, reaching a maximum at
8 h, and persisting for several more hours. It was accompanied by
an increase in Fos protein synthesis. The second peak of
c-fos RNA was caused by an UV dose-dependent increase in
mRNA half-life from about 10 to 60 min. With similar kinetics, the
mRNAs of other UV target genes (i.e., the Kin17 gene,
c-jun, I
B, and c-myc) were stabilized (e.g.,
Kin17 RNA from 80 min to more than 8 h). The delayed response was
not due to autocrine cytokine secretion with subsequent autostimulation of the secreting cells or to UV-induced growth factor receptor activation. Cells unable to repair UVC-induced DNA damage responded to
lower doses of UVC with an even greater accumulation of
c-fos and Kin17 mRNAs than repair-proficient wild-type
cells, suggesting that a process in which a repair protein is involved
regulates mRNA stability. Although resembling the induction of p53, a
DNA damage-dependent increase in p53 was not a necessary intermediate in the stabilization reaction, since cells derived from p53 knockout mice showed the same pattern of c-fos and Kin17 mRNA
accumulation as wild-type cells. The data indicate that the signal flow
induced by UV radiation addresses not only protein stability (p53) and transcription but also RNA stability, a hitherto-unrecognized level of
UV-induced regulation.
 |
INTRODUCTION |
Men and mice and derived cells in
culture react to irradiation with ultraviolet light A, B, or C (UVA,
-B, or -C) by initiating a new program of gene expression that has been
named the UV response (reviewed in references 24,
30-32, and 66). Most of the response known so far is transcriptional, as shown by run-on analyses or promoter studies. Within 10 min, the immediate-early genes
c-fos, c-jun, and junB are
transcriptionally activated, preceded by activation of transcription
factors such as SRF-TCF, ATF-2, and CREB (15, 33, 55).
NF-
B target genes are activated with a delay of about 2 h
(6, 44). Since several of the response genes carry out
regulatory functions themselves (e.g., c-fos), secondary
response genes are transcribed with considerable delay (6, 9,
58). Transcriptional activation of the immediate response genes
is triggered through signal transduction which originates from one of
several primary UV target molecules (for a review, see reference 31). UV can induce signal transduction cascades
through DNA lesions introduced through irradiation (9, 46, 47,
58), through damaged ribosomal RNA (34), and through
the inactivation of one of many oxidation-sensitive protein tyrosine
phosphatases (29, 41).
Other levels of gene regulation have, as yet, received less attention.
Stabilization of protein is responsible for the UV-DNA lesion-induced
increases in p53 and E2F-1 levels (10, 11, 45, 71). Nothing
is known about UV influences on pre-RNA splicing and almost nothing
about the regulation of mRNA turnover. The turnover of UV-induced
c-fos transcripts at its peak level is rapid, and several
structural features of c-fos RNA have been made responsible
for this rapid degradation (12, 36, 37, 50, 56, 63). One of
the features common to rapid-turnover transcripts, sequences in the 3'
untranslated region (UTR) (reviewed in reference
16), are eliminated in Fos-expressing retroviruses (19, 20, 51). These viral fos transcripts are
stable, enhancing oncogenicity.
The mammalian UV response resembles in part the bacterial SOS response
(reviewed in references 31 and
69). One of the key proteins in the SOS response is
the bacterial RecA protein. Eukaryotic proteins with similarities to
the bacterial RecA protein have been identified. Most of them are
encoded by rad genes which are induced in response to
irradiation and involved in the repair of irradiation-induced DNA
lesions (7, 62). By screening a murine expression library
with anti-RecA antibodies, the nuclear protein Kin17 was identified
(2, 3). Kin17 and RecA appear to share an epitope located in
the RecA carboxy-terminal region that is involved in the regulation of
DNA binding and in the SOS response in Escherichia coli,
while differing in most other respects (38, 39, 43, 68).
Overexpression of Kin17 seems to be toxic for mammalian cells
(40). Bacterially produced Kin17 binds to DNA (64,
65). The physiologic function of Kin17 is unknown as yet.
We report here that UVC treatment of several mammalian cell lines
produces two peaks of c-fos RNA abundance, at 30 to 60 min and at about 8 h. While the first peak represents the known
transcriptional response, this newly discovered second peak of
accumulation is, as we report here, due to UV-induced stabilization of
c-fos RNA. Several other short-lived RNAs are also
stabilized. The UV-induced accumulation of Kin17 RNA is exclusively
caused by RNA stabilization and follows the kinetics and
characteristics of the second c-fos peak. Other inducers of
c-fos, such as phorbol ester or growth factors, cannot
trigger the biphasic c-fos response and cannot reduce RNA
turnover. Furthermore, RNA stabilization is induced in cells defective
in the Xeroderma pigmentosum group A (XPA) DNA repair gene
xpa at a lower UV dose than in wild-type cells. Although
this is reminiscent of the induction of p53, UV-induced elevation of
p53 protein levels is not an intermediate in the stabilization of
c-fos and Kin17 RNA.
 |
MATERIALS AND METHODS |
Cell lines and their treatment.
The following cell lines
were used: NIH 3T3 cells were obtained from Peter Gruss,
Göttingen, Germany; p53
/
mouse embryo
fibroblasts, p53+/+ mouse embryo fibroblasts
(p53
/
and p53+/+ [22]),
and CB17 cells were obtained from Michael Fritsche, Freiburg,
Germany; p53
/
mdm2
/
double knockout
cells were obtained from David Lane, Dundee, Scotland; primary
XPA
NIH 3T3 (
XPA) and XPA+ NIH 3T3 (wild-type) cells were obtained from
Harry van Steeg, Bilthoven, The Netherlands; and
c-fos
/
and c-fos+/+
murine embryonic fibroblasts were obtained from Peter Angel, Heidelberg, Germany.
All cells were grown in Dulbecco's modified Eagle's medium (DMEM)
supplemented with 8% fetal calf serum (FCS), penicillin (100 U/ml),
and streptomycin (100 µg/ml) at 37°C in humidified 6%
CO2.
For UVC irradiation, the culture medium was removed and the culture
dishes were washed once with warm phosphate-buffered saline
(PBS). The
cells were irradiated (without PBS) with a germicidal
lamp (254 nm and
30 J/m
2, unless otherwise indicated), and the original
culture medium
was returned to the cells. Growth factors (epidermal
growth factor
[EGF], 2 ng/ml; basic fibroblast growth factor
[bFGF], 10 ng/ml;
and interleukin-1

[IL-1

], 2 ng/ml), and 4 µM methyl methansulfonate
(MMS), or phorbol ester
(12-
O-tetradecanoyl-phorbol-13-acetate
[TPA], 60 ng/ml)
were directly added to the culture medium. Treatment
with gamma
irradiation was as follows: cells in culture medium
were exposed to 5 Gy of radiation in a cobalt-60 gamma radiation
source at a dose rate of
5.75 Gy/min. A stock solution of suramin
(final concentration, 0.3 mM)
was freshly prepared in H
2O and
diluted into the culture
medium 30 min prior to treatment of cells.
For the RNA stability assay,
cells were UVC irradiated with a
dose of 30 J/m
2. After a
45-min or 4.5-h incubation period, actinomycin D-mannitol
(Sigma)
solubilized in water was added to the cultures to a final
concentration
of 5 µg/ml and incubated further, as
indicated.
RNA preparation, Northern blots, and cDNA probes.
Poly(A)+ RNA was isolated according to the method of
Rahmsdorf et al. (50), resolved on a 1.4%
agarose-formaldehyde gel, and transferred onto a Hybond N+ nylon
membrane. Hybridization was performed as previously described
(50) using radiolabelled cDNA probes comprising either an
~1,000-bp PstI fragment of v-fos (19), an ~1,000-bp fragment of mouse Kin17 obtained by PCR
with oligonucleotides 5'-GAGCCCCAAGGCCATCGCCAAT-3' and
5'-TTCCTGCGTCTCAACTTCCATA-3' (39), cDNAs of
c-jun, I
B, c-myc, urokinase-type plasminogen activator (u-PA), and EF-1, or an ~1,200-bp PstI fragment
of GAPDH (25).
Metabolic labelling and immunoprecipitation.
Cells were
grown in DMEM without methionine and cysteine, supplemented with 8%
dialyzed FCS and pulse-labelled with 150 µCi of Pro-mix (Amersham)
per ml, for 2 h. Cells were washed twice in ice-cold PBS and lysed
on ice in ice-cold radioimmunoprecipitation assay (RIPA) buffer (50 mM
Tris [pH 8], 125 mM NaCl, 0.5% IGEPAL- CA630, 0.5% sodium
desoxycholate, 0.1% sodium lauryl sulfate, 1 µg of aprotinin per ml,
1 µg of leupeptin per ml, 1 mM phenylmethylsulfonyl fluoride). The
lysate was centrifuged at 150,000 × g and 4°C for 20 min. The lysate was precleared by incubation with 2 µl of a preimmune
serum and protein A-agarose (Calbiochem). The resulting supernatant was
added to 2 µl of a rabbit polyclonal anti-Fos antiserum precoupled to
protein A-agarose. Immunoprecipitation reactions were incubated on a
rocking platform at 4°C for 1.5 h. The agarose-antibody-Fos
complexes were collected by centrifugation, washed four times in RIPA
buffer, resuspended in sample buffer, and resolved by sodium dodecyl
sulfate (SDS)-polyacrylamide gel electrophoresis (8). The
gel was fixed in 30% methanol-10% acetic acid for 20 min, washed in
water for 20 min, and enhanced in 1 M sodium salicylate-30% methanol
for 20 min. The gel was dried and put on X-ray film for exposure.
Run-on analysis.
Isolation of nuclei and in vitro
transcription was performed according to the procedure outlined in
reference 28. After the transcription reaction was
performed, the nuclei were lysed in solution D (4 M
guanidinium-isothiocyanate, 0.5% N-laurylsarcosine, 25 mM
Na citrate, 143 mM
-mercapthoethanol). A 1/10 volume of 2 M Na
acetate, pH 4, was added, and the reaction was vortexed. An equal
volume of phenol was added, vortexed, followed by a 1/10 volume of
chloroform, agitated, and incubated on ice for 15 min. Phases were
separated by centrifugation at 15,000 × g for 20 min, and the upper phase was mixed with an equal volume of isopropanol and
centrifuged at 15,000 × g for 15 min. The resulting
pellet was solubilized in 300 µl of solution D, and the radioactive
RNA was precipitated with an equal volume of isopropanol and washed with 70% ethanol.
Binding of DNA to nitrocellulose was performed as described in
reference
28 using a dot blot apparatus. Filters
were prehybridized
at 65°C for 2 h in 3× SSC (1× SSC is 0.15 M
NaCl plus 0.015 M
Na citrate; 450 mM NaCl and 45 mM Na citrate)
supplemented with
3× Denhardt solution (0.06% Ficoll 400, 0.06%
polyvinylpyrrolidone,
0.06% bovine serum albumin), 6 mM
NaH
2PO
4, 9 mM Na
2HPO
4,
0.045%
Na
4P
2O
7, 1% SDS, 10 mM
EDTA, and 50 µg of salmon sperm DNA/ml.
RNA was denatured at 85°C for 5 min, and hybridization was carried
out with 8 × 10
5 cpm of each sample in 1.5 ml of
hybridization solution (450 mM
NaCl, 45 mM Na citrate, 0.04% Ficoll
400, 0.04% polyvinylpyrrolidone,
0.06% bovine serum albumin, 6 mM
NaH
2PO
4, 9 mM Na
2HPO
4,
0.045%
Na
4P
2O
7, 0.1% SDS, 10 mM
EDTA, 10 µg of salmon sperm DNA per ml)
at 65°C for 36 h. The
filters were washed as described for Northern
blots in reference
50 and placed on X-ray films for
exposure.
MTT assay.
MTT (dimethylthiazolyldiphenyltetrazolium
bromide) is reduced to formazan by mitochondrial respiratory enzymes.
This reaction correlates with cell viability and can be quantified spectrophotometrically.
Cells were irradiated with UVC and counted, and 10
3
cells/well were plated in 96-well plates in 50 µl of DMEM. After
36 h or
5 days, respectively, 50 µl of MTT freshly solubilized
in DMEM
at a concentration of 2 mg/ml was added, and the cells were
returned
to the incubator for an additional 4 h. The reaction was
stopped
by removing the medium and adding 50 µl of 100% isopropanol
to
the cells. The degree of MTT conversion was measured immediately
at
590
nm.
 |
RESULTS |
Two waves of UVC-induced c-fos mRNA accumulation in
murine fibroblasts.
Several UV-responsive genes, e.g., those
coding for metalloproteases or plasminogen activator, are
transcriptionally activated with considerable delay (31,
47). Their transcription depends on the presence of AP-1
(Fos-Jun) binding sites, and UV-induced transcription can be prevented
by antisense depletion of Fos or Jun (57). Murine
c-fos
/
cells do not respond to UVC with
transcriptional activation of the genes encoding collagenase 1, stromelysin 1, or stromelysin 3 (59). The late requirement
for AP-1 in the UVC-induced transcriptional activation of
AP-1-dependent genes contrasts with the rapid and transient kinetics of
c-Fos and c-Jun synthesis. Apparently, a second condition must be met
for metalloprotease transcription which is not established at the time
of the early Fos and Jun peak of synthesis, that is, at times when Fos
and Jun of the initial expression period should be depleted by
turnover. This second condition must occur later. We therefore wondered
which AP-1 molecules would then act on these promoters at late time points.
A possible solution was found by measuring the abundance of
c-
fos RNA over many hours after UV irradiation of cells. In
NIH
3T3 cells irradiated with UVC (30 J/m
2), we detected
two waves of c-
fos mRNA accumulation, at 30 to
60 min and at
8 to 10 h (Fig.
1A). Between these
times, at 2 and
3 h, c-
fos mRNA was at a nondetectable
level or at a level comparable
to that of noninduced cells. The second
peak was less sharp, with
accumulation starting at 4 to 5 h after
irradiation and persisting
for several hours. The synthesis of Fos
protein, as shown by pulse-labelling
and immunoprecipitation,
corresponded to the RNA levels: a first
peak at about 2.5 h was
followed by a second increase at 10.5
h postirradiation (Fig.
1B).
Since Fos protein is more stable
than c-
fos RNA, Fos
abundance did not completely return to control
levels between the
peaks.

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FIG. 1.
Time course of c-fos and Kin17 mRNA induction
by UV. (A) NIH 3T3 and CB17 cells were irradiated with UVC (30 J/m2) and harvested at the indicated time points.
Poly(A)+ RNA was prepared, and 7.5 µg of each sample was
resolved on a 1.4% agarose-formaldehyde gel. The RNA was transferred
to a Hybond N+ nylon membrane and sequentially probed with
32P-labelled cDNAs coding for v-fos (hybridizing
to c-fos mRNA), Kin17, and GAPDH and placed on X-ray films.
(B) NIH 3T3 cells were either irradiated with UVC (30 J/m2)
or treated with 60 ng of TPA per ml and harvested 2.5 to 10.5 h
after irradiation as indicated. Before harvest, cells were
pulse-labelled with 150 µCi of Pro-mix (Amersham) per ml for 2 h
and lysed in RIPA buffer. The lysates were precleared by incubation
with preimmune serum (PIS) and protein A-agarose. Fos was
immunoprecipitated with a polyclonal anti-Fos antibody and protein
A-agarose and loaded onto a SDS-10% polyacrylamide gel. The gel was
fixed in acetic acid-methanol, enhanced with sodium salicylate, and
dried, and X-ray film was exposed for 2 weeks. The bands enclosed
within the bracket represent differentially phosphorylated forms of Fos
protein.
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|
Several cell lines responded to UV irradiation with two waves of
c-
fos RNA accumulation, although the height of the second
peak was variable: the height of the peak was most prominent in
BALB/c
3T3 cells, NIH 3T3 fibroblasts, and JB6 epidermal cells
and less
pronounced in murine NIH 3T3-like fibroblasts derived
from CB17 or SCID
mice and in several human cell lines (Fig.
1A
and data not shown). A
possible explanation for this variability
between cell lines will
become clear
below.
Of all c-
fos transcription-inducing agents examined, only
UVC irradiation caused two waves of c-
fos mRNA accumulation,
while
all agents triggered the immediate-early transcription in NIH
3T3
cells. Agents examined included a combination of growth factors
(EGF,
bFGF, and IL-1

), TPA, gamma irradiation, and MMS. Representative
Northern blots were scanned with a laser densitometer and plotted
(Fig.
2).

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FIG. 2.
The biphasic induction of c-fos mRNA is
specific for UVC irradiation. NIH 3T3 cells were irradiated with UVC
(30 J/m2) or gamma rays (50 Gy) or treated with 4 µM MMS,
TPA, (60 ng/ml), or a mixture of growth factors (EGF, [2 ng/ml], bFGF
[10 ng/ml], and IL-1 [2 ng/ml]). At the indicated time points,
poly(A)+ RNA was prepared, and 5 µg of each sample was
resolved on a 1.4% agarose-formaldehyde gel. Hybridizations were
carried out as described in the legend to Fig. 1. Relative levels
normalized for GAPDH were determined by phosphorimager and
densitometry.
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|
Kin17 RNA accumulation was induced with kinetics resembling those
during the late phase of c-
fos RNA (Fig.
1A). It could only
be induced by UVC, not by TPA or growth factors (results not shown),
and the relative induction in different cell lines corresponded
to the
heights of the second c-
fos peak, suggesting that the late
accumulation of c-
fos RNA and that of Kin17 followed the
same
mechanism.
The second wave of c-fos mRNA abundance and the
accumulation of Kin17 mRNA are due to UV-induced transcript
stabilization.
The immediate-early induction of c-fos
is transcriptional. To investigate whether the 8-h peak of
c-fos mRNA accumulation also depended on an elevated
transcriptional rate, we performed nuclear run-on analyses at early and
late time points after UVC irradiation. Only an early increase in rate
was detected in these analyses (Fig. 3).
Obviously, transcriptional rate is not significantly increased late
after UV irradiation. Kin17-promoter-luciferase constructs failed to
show UV-induced transcription above basal levels (data not shown), also
suggesting that UV did not increase the transcriptional rate. The
observed increases in RNA abundance (Fig. 1A) must therefore be
regulated on a posttranscriptional level.

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FIG. 3.
Run-on analysis of c-fos transcription after
UV irradiation. NIH 3T3 cells were irradiated with UVC (30 J/m2). At the indicated time points, nuclei were isolated
and elongation of transcripts was performed in vitro in the presence of
32P-labelled nucleotide triphosphates. A total of 8 × 105 cpm at each time point were hybridized to plasmids
encoding c-fos, c-jun, or GAPDH.
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|
The slow increase in rate and lasting abundance (Fig.
1A) are
compatible with a change in the turnover of RNA. The magnitude
of this
response would thus depend on the basal transcriptional
rate, which may
indeed differ between cell types. To measure RNA
stability, we
harvested cells at various times after the addition
of the
transcriptional inhibitor actinomycin D (Act D). Act D
was added at 45 min and at 4.5 h after irradiation with UVC, and
RNA was isolated
and probed for c-
fos and Kin17 RNA by Northern
blot
analysis. At 45 min after UVC irradiation, c-
fos mRNA
decayed
with a half-life of 15 to 20 min. In contrast, the half-life of
c-
fos mRNA at 4.5 h was 60 to 70 min (Fig.
4). Since Kin17 RNA
abundance was low 45 min after UVC irradiation, long exposure
times were required to measure
turnover. The half-life was determined
to be about 80 min (Fig.
4),
similar to that in mock-treated cells
(data not shown). Within 4.5 h, UVC irradiation prolonged the
half-life of Kin17 mRNA to more than
8 h (extrapolated from Fig.
4). Thus, the relatively stable Kin17
RNA was nevertheless further
stabilized by a factor of more than 5.

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FIG. 4.
UV induces c-fos and Kin17 mRNA
stabilization. NIH 3T3 cells were irradiated with UVC (30 J/m2). At 45 min or 4.5 h after irradiation, Act D (5 µg/ml) was added, and the cells were harvested immediately (0) and
every 15 min (for determining the decay of c-fos mRNA) or
every 40 min (for determining the decay of Kin17 mRNA), respectively
(top). Poly(A)+ RNA was prepared, and 15 µg of each
sample was resolved and hybridized as described in the legends to Fig.
1 and 2. The specific hybridization signals for c-fos and
Kin17 mRNA were corrected for GAPDH mRNA, which was used as a loading
control, and plotted in the graphs (bottom). The relative abundance of
c-fos and Kin17 mRNA, respectively, at the time of Act D
addition was set at 100%.
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|
The increase in mRNA stability may well account for the second wave of
c-
fos mRNA and for the induction by UV of Kin17 mRNA
accumulation, although a minor contribution by transcriptional
activation cannot be completely ruled out because of the low basal
transcriptional rate of both
genes.
Several mRNAs with relatively short half-lives are stabilized by
UV.
UV-induced stabilization addresses two species of RNA with
rather different half-lives. An obvious question is how specific is
this stabilization process? We examined a series of other UV-responsive genes and found that they fall into two classes: c-jun,
c-myc, and I
B RNAs were also stabilized (Fig.
5). These RNAs have in common a
relatively short spontaneous half-life of 15 to 30 min (Fig. 5). u-PA
RNA (Fig. 5) and the RNA for the translation elongation factor 1 (EF-1)
(data not shown) were not stabilized. We conclude that UV causes an
increase in lifetime for several, but not all, mRNAs.

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FIG. 5.
Stabilization of several short-lived mRNAs after UV
irradiation. NIH 3T3 cells were irradiated with UVC (30 J/m2) or left unirradiated for control and treated as
described in the legend to Fig. 4. Hybond N+ nylon membrane
was sequentially probed with 32P-labelled cDNAs encoding
c-jun, I B, c-myc, u-PA, and GAPDH,
respectively. Specific hybridization signals were quantified by
evaluating scanned X-ray film using NIH Image software, corrected for
GAPDH, and plotted. The relative abundance of the particular mRNAs at
the time of Act D addition was set at 100%.
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|
UVC-induced RNA stabilization is independent of secreted growth
factors or of growth factor receptors.
The immediate-early
transcriptional activation of c-fos by UVC has been shown to
depend, at least in part, on the ligand-independent activation of
receptor tyrosine kinases and other receptors (4, 18, 33, 52, 55,
61). Experimental evidence included (i) UV-induced tyrosine
autophosphorylation of several receptor tyrosine kinases (41,
55) and receptor clustering (4, 52), (ii) inhibition
of the UV response by the growth factor receptor poison suramin, (iii)
growth factor-induced downregulation of growth factor receptors and
subsequent transient refractoriness either to the same growth factor or
to UV (33, 55), and (iv) the inhibition of the UV response
upon introduction of dominant negative versions of certain receptor
tyrosine kinases (55). We aimed at obtaining similar types
of evidence for the UV-induced stabilization.
As expected, pretreatment of cells with suramin for 30 min completely
inhibited early c-
fos mRNA accumulation (Fig.
6). This
is in agreement with the
previous finding that growth factor receptors
are activated by UVC.
Suramin could not, however, prevent UV-induced
stabilization of
c-
fos mRNA (the second peak of RNA abundance)
or the basal
synthesis or the induction of Kin17 RNA at 8 h after
UVC
irradiation (Fig.
6). Thus, while clearly the early transcriptional
induction of c-
fos was suramin sensitive, RNA stabilization
did
not depend on activation of a suramin-sensitive receptor tyrosine
kinase. At the same time, the suramin experiment rules out the
possibility that the late stabilization of RNA was caused by the
induced secretion of a growth factor, since its action would also
be
poisoned by suramin; this would have been a realistic possibility,
since growth factor secretion can indeed be triggered by irradiation
of
cells with UVC (
6,
42,
54). Participation of a secreted
growth factor was also made unlikely by an experiment with
serum-starved
cells and hourly medium changes (see Fig.
8, lower
panel). Late
c-
fos RNA accumulation was barely affected by
medium exchange.

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FIG. 6.
Pretreatment of cells with suramin does not interfere
with c-fos or Kin17 mRNA stabilization. NIH 3T3 cells were
grown in DMEM supplemented with 0.5% FCS for 24 h prior to UVC
irradiation. The cells were irradiated with UVC (30 J/m2)
where indicated or left unirradiated for control. Where marked in the
figure, suramin was added to a final concentration of 0.3 mM 30 min
prior to UVC irradiation or 4 h (4 h after suramin) or 7 h (1 h past suramin) after irradiation. The cells were harvested at 0.5 h or 8 h after UVC irradiation as shown, poly(A)+ RNA
was prepared, and 5 µg of each sample was resolved and hybridized as
described in the legends to Fig. 1 and 2.
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Cells whose relevant receptor tyrosine kinases had been made refractory
to their ligands by pretreatment with these ligands
no longer show the
early c-
fos response to UV (Fig.
7A) (
33,
55), as UV addresses
these same receptors in a ligand-independent
fashion. The receptors for
EGF, IL-1

, and bFGF have previously
been shown to be relevant for
the UV response in cultured HeLa
cells (
55). This is also
the case for the early response in
NIH 3T3 cells (Fig.
7A). The late
response was, however, not altered
in cells pretreated with EGF,
IL-1

, and bFGF (Fig.
7B), suggesting
either that another secreted
(and suramin-resistant) cytokine
was responsible or that
receptor-dependent pathways were not involved
in UV-induced RNA
stabilization. Only the latter possibility is
compatible with the
suramin experiment.

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FIG. 7.
Differential effect of growth factor pretreatment on
early and late c-fos induction. NIH 3T3 cells were grown in
DMEM supplemented with 0.5% FCS for 24 h prior to UVC irradiation
and irradiated with 30 J/m2 UVC. Where marked in the
figure, cells were treated with a cocktail of growth factors (EGF, 2 ng/ml; bFGF, 10 ng/ml; IL-1 , 2 ng/ml) at 30 min prior to
irradiation. At 45 min (early) (A) and 8 h (late) (B), irradiated
cells were harvested. Poly(A)+ RNA was prepared, and 5 µg
of each sample was analyzed as described in the legend to Fig. 1. The
relative abundance of c-fos mRNA was determined
densitometrically and plotted after correction for GAPDH mRNA. The
relative abundance of c-fos mRNA in cells that had been
irradiated but not treated with growth factor was set at 100%.
|
|
Interestingly, a constant supply of 8% FCS enhanced the late
c-
fos RNA peak (compared to cells starved at 0.5% FCS
[Fig.
8]),
perhaps reflecting a higher
basal rate of c-
fos transcription
under serum-enhanced
conditions. With Kin17, this effect was marginal
(Fig.
8).

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|
FIG. 8.
Influence of serum on RNA stabilization by UV. (A) NIH
3T3 cells were either grown in DMEM supplemented with 8% FCS or were
serum starved in DMEM plus 0.5% FCS prior to UVC irradiation for
24 h. Poly(A)+ RNA was analyzed as described in the
legends to Fig. 1 and 2. (B) NIH 3T3 cells were serum starved in DMEM
supplemented with 0.5% FCS for 24 h prior to UVC irradiation.
Cells were irradiated with 30 J/m2 UVC and, where marked in
the figure key (+), the culture medium was replaced every hour by fresh
DMEM plus 0.5% FCS. Poly(A)+ RNA was prepared and analyzed
as described in the legends to Fig. 1 and 2.
|
|
Different UVC dose requirements for c-fos and Kin17
mRNA stabilization in cells deficient or proficient in the
xpa gene.
UVC affects several primary target molecules
relevant for gene regulation. We ruled out receptor tyrosine kinases by
the experiments described in the previous paragraph. Several late
cellular reactions to UVC irradiation observed earlier appear to depend
on UVC-induced DNA damage: e.g., the stabilization of p53 protein
(45, 71), the release of cytokines (6), and the
late transcriptional activation of several genes encoding proteases and
of the metallothionein 2A gene (9, 58). That these reactions
require prior UVC-induced DNA damage has been deduced from the finding
that human cells deficient in the repair of UVC-induced DNA damage,
such as cells derived from patients with XPA or Cockayne's syndrome,
activated these functions at much lower UVC doses than did normal
wild-type cells. After UV irradiation, cells from normal human
individuals or mice remove by nucleotide excision repair UV-induced 6-4 photoproducts and cyclobutane pyrimidine dimers from DNA with
half-lives of 90 min and 4 h, respectively (26). In
particular, cells from patients with a deficiency in the xpa
gene or from mice with a disruption of this gene do not repair at any
measurable rate. After the initially identical deposit of UV-induced
DNA damage, the density of lesions will progressively divert between
normal and repair-deficient cells. To reach the same density of lesions at a given time after irradiation, a higher dose must be applied to
normal cells than to repair-deficient cells. Thus,
photoproduct-dependent processes will occur at a lower dose in
repair-deficient cells than in wild-type cells (9).
To investigate whether the late wave of c-
fos mRNA
accumulation and the induction of Kin17 mRNA, like the stabilization of
p53 protein (
45), depended on the capacity of cells to
repair
UVC-induced DNA damage, we made use of 3T3 cells (designated

XPA)
derived from mice in which the murine homologue of the human
xpa gene had been knocked out by recombinational
inactivation (
21),
and 3T3 cells from their
XPA
+/+ siblings. We first confirmed that UVC induced the
second wave
of c-
fos mRNA induction and Kin17 mRNA induction
in

XPA cells
and then tested the dose dependence for RNA
stabilization (Fig.
9). Doses above 20 to
30 J/m
2 were needed for stabilization of both
c-
fos and Kin17 RNA in
repair-proficient wild-type cells.
Only 5 to 10 J/m
2 were required for half-maximal induction
in the repair-deficient

XPA cells (Fig.
9). At UVC doses above 10 J/m
2, Kin17 mRNA disappeared in preference over
c-
fos RNA. We have
no definitive explanation for this
difference. Possibly the primary
transcript of Kin17 is much larger
than that of c-
fos, and thus
higher UV doses may
preferentially affect basal Kin17 transcription
by a DNA
lesion-dependent block of elongation. From the dose-response
curves
shown in Fig.
9, we can conclude either that UVC-induced
DNA lesions
are intermediates in the induced stabilization of
c-
fos and
Kin17 RNAs or that components of the XPA complex affect
RNA stability.

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|
FIG. 9.
UV dose dependence of RNA stabilization in cells from
XPA knockout mice and from wild-type cells. Fibroblast cell lines from
XPA knockout mice ( XPA) and from the respective parental mice (wild
type) were irradiated with 2, 5, 10, 20, or 30 J/m2 UVC or
left unirradiated for control. At 16 h postirradiation,
poly(A)+ RNA was prepared and processed as described in the
legends to Fig. 1 through 3.
|
|
As the UV dose dependence of RNA stabilization resembled that of p53
protein stabilization, we considered whether p53 could
mediate
stabilization of RNA (see Discussion). However, as shown
in Fig.
10, the stabilization of both
c-
fos and Kin17 RNA was identical
in isogenic embryonic
mouse fibroblasts differing only in p53
(p53
+/+ versus
p53
/
[
22]) (Fig.
10), excluding a role
for p53 in UVC-induced c-
fos and Kin17 RNA stabilization.
Also, cells doubly negative for p53
and Mdm2 responded like wild-type
cells, with two peaks of c-
fos RNA (results not shown),
indicating that Mdm2 also has no role
in the stabilization process.

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|
FIG. 10.
Equal induction of RNA stability by UV both in
p53+/+ and p53 / cells. Fibroblast cell
lines from p53 knockout mice (p53 / ) and from the
wild-type mice (p53+/+) were irradiated with UVC (30 J/m2). The cells were harvested at the indicated time
points, and poly(A)+ RNA was prepared and analyzed as
described in the legends to Fig. 1 through 3.
|
|
Delayed death of c-fos
/
cells.
Fos
is the subunit of a transcription factor, AP-1, which is decisive for a
large number of genes. In its absence, the UV response of several genes
is hampered (59). The induction of c-fos
transcription and of RNA stabilization could establish a survival
advantage. Along these lines of thought,
c-fos
/
cells have been examined for survival
after UV irradiation. Indeed, c-fos
/
cells
were found to be less resistant to UV (measured by lactic dehydrogenase
release), an effect not accounted for by a difference of DNA repair
(59). We have confirmed this result using a different survival assay, the MTT conversion assay, which measures viability instantaneously (Fig. 11).
Interestingly, viability of c-fos
/
cells was
decreased with an enormous delay: at 36 h, MTT counts were still
normal, while decreasing progressively thereafter.

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|
FIG. 11.
c-fos is required for cell survival.
c-fos+/+, c-fos / , and
NIH 3T3 cells were irradiated with the indicated UVC dose, counted, and
plated in quadruplicate at a density of 103 cells/well in
96-well plates. After 36 h or 5 days, respectively, MTT was added
at a final concentration of 1 mg/ml, and the cells were returned to the
incubator for additional 4 h. The medium was replaced by
isopropanol, and MTT conversion was immediately measured at 590 nm. The
mean values of three independent experiments were calculated and
plotted as percentages of nonirradiated cells.
|
|
 |
DISCUSSION |
This paper describes a novel feature of c-fos
regulation, UV-induced stabilization of its RNA
surprising in view of
the fact that many laboratories (including one of ours) have studied
c-fos for years. UV-induced stabilization of RNA appears to
be selective: the RNAs for c-fos, c-jun,
c-myc, I
B
, and Kin17 (this paper) are stabilized,
whereas actin, GAPDH (see Fig. 4), u-PA, and EF-1 RNA turnover was not
changed (data not shown and this paper). Stabilization of RNA can, of
course, only occur with RNA that is intrinsically unstable.
Nevertheless, both Kin17 and u-PA show moderately long half-lives but
are discriminated by the stabilization process. The magnitude and time
course of stabilization depend on the rate of transcription and
therefore vary with different genes. The spontaneous transcription of
c-fos and c-jun is a function of growth
conditions and likely differs between cell types. A low transcriptional
rate in several human cell lines may be the reason that UVC-induced
c-fos RNA stabilization in these cells was barely detectable.
UVC-induced RNA stabilization varied with the capacity of cells to
repair photoproducts in nuclear DNA. In repair (XPA)-deficient fibroblasts, a two- to three-times-lower UV dose was required for RNA
stabilization than in repair-proficient cells. This observation supports our hypothesis that the density of DNA lesions (and of protein
complexes assembled at these lesions) is an intermediate in induced RNA
stabilization, as lesion density remains constant in XPA cells, while
wild-type cells remove lesions with a half-life of 90 min to 4 h
(26). To retain the same lesion density in repair-proficient
cells, the initial dose applied must be higher in repair-proficient
cells. Alternative explanations for the different dose responses in XPA
and wild-type cells need to be considered (see below).
Following the DNA damage hypothesis, it is obvious that additional
steps are required between the introduction of DNA lesions and the
activation or inactivation of critical proteins affecting RNA
stability. A hypothetical scheme could involve a lesion-dependent arrest of transcription which is converted in an unknown fashion into a
signaling pathway to the RNA-degrading exosome (67). Indeed,
transcriptional induction of genes and stabilization of p53 correlate
best with DNA lesions in transcribed regions of the genome (9,
71). To identify components of a signal transduction chain
involved in the UV-dependent stabilization of RNA, we tested numerous
inhibitors. None, however, prevented the stabilization: vanadate,
SB203580 (Jun N-terminal protein kinases [JNKs] and p38),
PD98059 and U0126 (MEKs), Ly294002 (phosphatidylinositol 3-kinases,
ATM, and DNA-dependent protein kinase), wortmannin, rapamycin (S6
kinase), roscovitin (CDKs), okadaic acid (protein phosphatase 2A), H7
(protein kinase C), trichostatin (histone deacetylase), and several
inhibitors of protein synthesis. Tentatively, this also excludes the
involvement of known protein kinases recognizing DNA strand breaks.
RNAs regulated by changes in turnover carry specific
cis-acting elements. One of these elements, consisting of
several repeats of the sequence AUUUA, is found in the 3' UTR (16,
36, 53). Indeed, c-fos, c-jun,
c-myc, and Kin17 RNAs carry AUUUA repeats in their 3' UTRs.
These AU-rich sequences bind several specific proteins, one of which
clearly increases RNA stability (49). Also,
cis-acting elements in other sites of the mature RNA likely bind specific proteins, affecting RNA stability. We hypothesize that a
signal transduction cascade originating from a DNA photoproduct leads
to activation of RNA binding proteins involved in RNA stability. Interestingly, JNK can prolong the lifetime of IL-2 RNA
(17). If JNK were activated by DNA damage (which is still
debated [1]), UV-induced JNK activity would be a good
candidate as a member of the signal transduction cascade. Inhibitor
studies, however, speak against a role by JNK.
Could cells defective in XPA lack repair of some other cellular
component damaged by UV? We are not aware of another XPA-dependent repair process but cannot exclude its existence. For instance, double-stranded RNA, e.g., in ribosomes, could be subjected to XPA-dependent lesion repair. Damage to ribosomal RNA has been reported
to cause signal transduction to JNK (34). One could also
argue that the increased response in XPA cells reflects release from an
RNA turnover process, suggesting that XPA and partner proteins were
actively involved in mediating high rates of RNA turnover. This
involvement would need to occur only after UV irradiation. UV
irradiation could then be absorbed by a relevant non-DNA and/or non-RNA
target. But we find difficult to explain, in this hypothetical scheme,
the dose difference of UV-induced RNA stabilization between XPA and
wild-type cells.
Could a transcriptional factor be involved in RNA stabilization? It is
puzzling that the activation of several transcription factors not only
affects transcription but also the turnover of their target
transcripts: e.g., the estrogen receptor (13), glucocorticoid receptor (48), and p53 (27). To
our knowledge, the mechanisms of how transcription factors could
achieve RNA stabilization are not clear. One could argue that, at the
same time, they transcribe genes whose products participate in RNA metabolism.
p53 is an interesting candidate for the stabilization of
c-fos and Kin17 RNA as well as other stress-induced RNAs
(35), since p53 is rescued from rapid proteasome-dependent
degradation by a DNA damage-dependent mechanism (5, 14).
Furthermore, p53 has been reported to induce RNA stability of its
transcriptional target gene, p21WAF-1
(27). Moreover, c-fos (but not Kin17) is also a
target gene of the transcription factor p53 (23 and
our unpublished data). However, several arguments speak against a
participation of p53 in UV-dependent c-fos and Kin17 RNA
stabilization: (i) p53 levels in cells are increased by both UV and
X-ray treatment, whereas c-fos and Kin17 RNA stability is
induced only by UV. (ii) p21 RNA turnover regulation by p53 is under
tyrosine kinase-phosphatase control in the absence of p53, as shown by
the effect of vanadate (27). Vanadate had no effect on
UVC-induced c-fos and Kin17 RNA stabilization (as discussed
above). (iii) UV-induced RNA stabilization occurs in both
p53+/+ and p53
/
cells.
Although stabilization of c-fos RNA does not involve p53,
p53 does interact in an interesting way with the transcription factor AP-1, which contains Fos and Jun as subunits. As shown by the comparison of Jun+/+ and Jun
/
cells, p53
synthesis is repressed by a Jun-containing member of the AP-1 family
(60). p53, in turn, induces immediate-early c-fos
transcription by binding to an intronic p53 binding site (23), detected by activating a temperature-sensitive p53
mutant protein.
A simple interpretation of the UV effect on RNA stability could be that
the overall inhibition of transcription and translation by UVC
preferentially affected the availability of an RNA-degrading enzyme. In
fact, the inhibition of translation by cycloheximide indeed stabilizes
c-fos RNA (50), and UVC treatment of cells leads
to the disappearance of specific proteins, e.g., the oncoprotein Mdm2
(10, 70). The stabilization of c-fos and Kin17
RNA occurs under irradiation conditions which reduce overall
transcription, due to the arrest of elongation at sites of DNA lesions.
One could speculate that the physiological significance of RNA
stabilization represents a rescue mechanism for important survival
functions which are (for example) AP-1 and NF-
B (6)
dependent. This is compatible with the observed survival-promoting
action of Fos (59 and this paper).
 |
ACKNOWLEDGMENTS |
We are grateful to Helmut Ponta and Martin Göttlicher for
text and figure criticism.
This work was supported by the European Community (grant
F14P-CT96-0052) and by the Association pour la Recherche sur le Cancer (contract no. 6060) and Electricité de France (contract no.
8702). P. Kannouche received a fellowship from the Institut National de
la Science et la Technologie Nucléaire (INSTN) du CEA and from EDF.
 |
FOOTNOTES |
*
Corresponding author. Mailing address:
Forschungszentrum Karlsruhe, Institute of Toxicology and Genetics, P.O.
Box 3640, 76021 Karlsruhe, Germany. Phone: 49-7247-823292. Fax:
49-7247-823354. E-mail: genetik{at}igen.fzk.de.
Present address: Cancer Research Campaign, Cell Transformation
Research Group, Department of Biochemistry, Medical Sciences Institute,
University of Dundee, Dundee DD1 4HN, United Kingdom.
Present address: Medical Research Council, Cell Mutation Unit,
Sussex University, Falmer, Brighton BN1 9RR, United Kingdom.
§
Present address: Institut für Rechtsmedizin, Am Pulverturm 3, 55131 Mainz, Germany.
 |
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Molecular and Cellular Biology, May 2000, p. 3616-3625, Vol. 20, No. 10
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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