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Molecular and Cellular Biology, July 2000, p. 5285-5299, Vol. 20, No. 14
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
The B56
Regulatory Subunit of Protein
Phosphatase 2A Is a Target for Regulation by Double-Stranded
RNA-Dependent Protein Kinase PKR
Zan
Xu1,2 and
Bryan R. G.
Williams1,2,*
Department of Cancer Biology, Lerner Research
Institute, Cleveland Clinic Foundation, Cleveland, Ohio
44195,1 and Department of Genetics, School of
Medicine, Case Western Reserve University, Cleveland, Ohio
441062
Received 5 October 1999/Returned for modification 16 November
1999/Accepted 14 April 2000
 |
ABSTRACT |
PKR is a cellular serine/threonine kinase that phosphorylates
eukaryotic translation initiation factor 2
(eIF2
) to regulate protein synthesis. PKR also plays a role in the regulation of transcription, programmed cell death and the cell cycle, processes which likely involve other substrates. In a yeast two-hybrid screen, we
isolated human protein phosphatase 2A (PP2A) regulatory subunit B56
as a PKR-interacting protein. The interaction between B56
and PKR
was confirmed by in vitro binding assays as well as by in vivo
coimmunoprecipitation, and this interaction is dependent on the
catalytic activity of PKR. Moreover, recombinant B56
was efficiently
phosphorylated by PKR in vitro and an isoelectric point shift in B56
was detected in extracts from cells induced with the PKR activator pIC.
An in vitro dephosphorylation assay showed that when B56
was
phosphorylated by PKR, the activity of PP2A trimeric holoenzyme was
increased. A functional interaction between B56
and PKR was observed
in cotransfection assays, where a B56
-mediated increase in
luciferase expression was inhibited by cotransfection with wild-type
PKR. This is likely due to a decreased level of eIF4E phosphorylation
caused by an increase in PP2A activity following PKR phosphorylation of
B56
. Taken together, our data indicate that PKR can modulate PP2A
activity by phosphorylating B56
to regulate cellular activities.
 |
INTRODUCTION |
Protein phosphorylation is a
critical regulatory mechanism utilized by the cell to regulate a myriad
of different enzyme reactions and signaling pathways. The steady-state
phosphorylation status of a protein is regulated through the combined
activities of kinases and phosphatases. Protein phosphatase 2A (PP2A)
(40, 46, 54) is the major cellular serine/threonine
phosphoprotein phosphatase and plays important roles in regulating the
cell cycle (32, 48), apoptosis (16),
transcription (1), translation (6), and signal
transduction (19). PP2A consists of three subunits: a 36-kDa
catalytic C subunit, a 60-kDa regulatory A subunit, and a regulatory B
subunit. PP2A can exist in the form of either AC core dimer
(PP2Ac) or heterotrimeric ABC holoenzyme. Free C subunit is
not found in the cell. Generally, PP2A is believed to be a negative
regulator of cell growth and possibly a tumor suppressor, since
inactivation of the regulatory A subunit due to gene mutation is
tumorigenic (53). The regulation of PP2A activity can occur at several levels. Structurally, association of different B regulatory subunits with the AC core dimer can result in altered substrate specificity, catalytic activity, and subcellular localization. There
are three structurally unrelated B families, B(B55), B'(B56), and B",
each having several closely related proteins and isoforms with
tissue-specific expression. PP2A activity is also subject to regulation
by posttranslational modification. For example, the catalytic subunit
of PP2A can be phosphorylated in vitro by tyrosine kinases, including
p60v-src, p56tck,
epidermal growth factor, and insulin receptor (9). Many of the regulatory B proteins are phosphoproteins (36), but
until this study, there was no evidence for a role of B protein
phosphorylation in the regulation of PP2A activity.
PKR has long been known to mediate the antiviral activity of
interferons. PKR is activated following infection with different viruses and acts to suppress viral replication (for reviews, see references 13, 56, and 57). The
antiviral activity of PKR is attributed to its inhibitory
phosphorylation of eukaryotic translation initiation factor 2
(eIF2
). The kinase activity of PKR is dependent on but not limited
to double-stranded RNA (dsRNA) binding (18). PKR has a
bipartite structure consisting of (i) an N-terminal dsRNA binding
domain which contains two dsRNA binding motifs responsible for dsRNA
binding and (ii) an C-terminal catalytic domain (38).
PKR functions in other cellular activities, including growth
regulation, transcription, the cell cycle, and cell death. The expression of functional PKR in yeast results in growth inhibition which can be rescued by coexpressing S51A mutant eIF2
, which is not
phosphorylated by PKR (11). Likewise, overexpression of PKR
in mammalian cells arrests cell growth and promotes apoptosis (3). Conversely, overexpression of mutant PKR protein causes the transformation of NIH 3T3 cells into cells having a tumorigenic phenotype (4, 28, 33, 39). However, the mechanisms
underlying the effects of PKR on mammalian cell growth remain unclear
and likely involve regulatory pathways in addition to eIF2
phosphorylation. For example, PKR plays a role in NF-
B activation by
dsRNA, tumor necrosis factor alpha, and gamma interferon
(56). Mouse embryonic fibroblasts derived from PKR knockout
mice show deficient or reduced activation of NF-
B or IRF1 by dsRNA
or tumor necrosis factor alpha (29, 59). PKR has also been
found to physically interact with Stat1 (58), Stat3 (A. Deb
and B. R. G. Williams, unpublished data) and p53 (14,
15), and it may regulate the activities of these transcription
factors. PKR has also been implicated in cell cycle regulation
(61), controlling the induction of apoptosis (3,
17) and regulating stress-activated cell signaling (12, 20,
23).
Clearly, PKR plays an important role in different pathways of cellular
activities. However, with the exception of eIF2
, substrates mediating the activities of PKR remain to be convincingly identified in
vivo. Accordingly, to search for novel substrates for PKR, we performed
a yeast two-hybrid screen (34) using a mutant of PKR (L362Q)
with reduced kinase activity as bait. One interacting clone encoded a
regulatory subunit of PP2A, B56
(37), suggesting an
interplay between PKR and PP2A. Here, we identify B56
as a novel
substrate of PKR and show that by phosphorylating B56
, PKR may
modulate PP2A activity, resulting in a potential novel pathway of
protein synthesis inhibition.
 |
MATERIALS AND METHODS |
Cell culture.
Human glioblastoma T98G, fibrosarcoma 2fTGH,
uterus carcinoma HeLa S3, monkey kidney COS-1, and murine 3T3-like
pkr+/+ or pkr
/
fibroblasts (C57/BL6 background) were maintained in Dulbecco modified
Eagle medium supplemented with 10% fetal bovine serum and grown at
37°C with 5% CO2.
Yeast two-hybrid screen of human HeLa S3 cDNA library.
The
bait plasmid pGBT9-PKR M3 was constructed by cloning mutant human PKR
(M3, L362Q) cDNA (7) into pGBT9 (Clontech) fused to the Gal4
binding domain (Gal4BD). Screening of a HeLa S3 cDNA Gal4 activation
domain (Gal4AD) library was performed according to the instructions of
the vendor (Clontech).
Construction of the full-length B56
cDNA.
The B56
cDNA
clone pGAD GH B56
N97 isolated from the HeLa S3 Gal4AD cDNA
library has a truncation of about 300 bp encoding the N-terminal 97 amino acids of B56
. This portion of cDNA was prepared by reverse
transcription of total mRNA from HeLa S3 cells by using Superscriptase
II (Gibco BRL) with an antisense primer (ZX4-dw [5'TAA TAA CAT ATG TCA
GGG CTC TCC AAA AAT CTC AAG]) specific to human B56
cDNA followed
by a PCR with primer ZX4-up (5'TAA TAA CAT ATG AGC GTC AGG GCC GCG GAG
ATG T) and ZX4-dw. This cDNA product was cloned into pBS II KS via
BamHI and EcoRI sites to create pBS-B56
N97. A
1.2-kb EcoRI fragment containing the B56
C-terminal cDNA
obtained from the original B56
truncation clone pGAD GH B56
N97
was then inserted into pBS-B56
N97. The resulting construct,
pBS-B56
, contains a cDNA encoding full-length B56
protein.
Recombinant B56
expression plasmid pET28c-B56
was constructed by
digesting pBS-B56
with BamHI and XhoI and
ligating this BamHI- and XhoI-digested B56
fragment to pET28c (Novagen). B56
protein expressed from this vector
has a six-histidine epitope tag followed by a T7 tag in the N terminus.
To construct the mammalian expression plasmid pZeoSV-B56
, pBS-B56
was digested with BamHI and XhoI and ligated into
pZeoSV (Invitrogen).
Recombinant protein preparation and purification.
Both
glutathione S-transferase-PKR (6) and
histidine-tagged recombinant human PKR protein (8) were
produced as described previously. Both recombinant B56
and eIF2
were expressed as six-histidine-tagged proteins and purified by
affinity chromatography using His-Bind metal chelation resin according
to the instructions of the manufacturer (Novagen). B56
was expressed
from the pET28c-B56
expression construct in Escherichia
coli BL21(DE3)pLysS cells (Novagen), which were grown at 37°C in
500 ml of Luria-Bertani medium containing 30 µg of kanamycin per ml
and 34 µg of chloramphenicol per ml and induced by 1.0 mM IPTG
(iospropyl-
-D-thiogalactopyranoside) for 45 min, and
purified under natural conditions. Human eIF2
was expressed from
pQE-eIF2
(7) in E. coli M15(pREP4) host cells
(Qiagen) grown in 4 liters of Luria-Bertani culture and induced with 1 mM IPTG for 4 h and was purified under denaturing conditions.
Further purification of eIF2
was performed using a Q Sepharose
Fast-Flow anion-exchange column (Pharmacia) with a starting buffer of
50 mM Tris-HCl (pH 7.9) and 50 mM NaCl. After washing of the column
with 250 mM NaCl-Tris buffer, eIF2
was eluted by increasing the
NaCl concentration to 500 mM. eIF2
protein was concentrated and
stored at
80°C after addition of glycerol to 10%.
In vitro phosphorylation assay. (i) Phosphorylation of MBP by
PKC
.
Myelin basic protein (MBP) (100 µg) was phosphorylated
with 25 ng of protein kinase (PKC) (Upstate Biotechnology) in 40 µl of assay dilution buffer (20 mM MOPS [morpholinepropanesulfonic acid]
[pH 7.2], 25 mM
-glycerophosphate, 1 mM sodium orthovanadate, 1 mM
dithiothreitol, 1 mM CaCl2), 10 µl of PKC activator (0.5 mg of phosphatidylserine per ml and 0.5 mg of diglycerides per ml in
assay dilution buffer), and 10 µl of ATP mixture (75 mM MgCl2, 50 µM ATP, 150 µCi of
[
-32P]ATP). The reaction was carried out at 30°C for
20 min.
(ii) Phosphorylation of B56
or eIF2
by PKR.
Recombinant B56
or eIF2
protein solution (about 200 ng) was mixed
with 30 µl of DBGA buffer (10 mM Tris-HCl [pH 7.6], 50 mM KCl, 2 mM
Mg acetate, 7 mM 2-mercaptoethanol, 20% glycerol), 20 µl of DBGB
buffer (2.5 mM MnCl2 in DBGA), 5 µl of ATP mixture (10 µM ATP and 1.5 µCi of [
-32P]ATP per ml in DBGA),
and 5 µl of poly(rI:rC) (pIC) (12 ng/µl in DBGA). The kinase
reaction was carried out at 30°C for 20 min after addition of 100 ng
of recombinant PKR to the mixture.
Site-directed mutagenesis of B56
.
Site-directed
mutagenesis of B56
was carried out with a reaction kit from Clontech
according to the manufacturer's instructions. To mutate serine 28 of
B56
to alanine, mutation primer MP-S28A (5'P-CACCCGGAAAGCGGTCCGCAAG-3') and selection primer
B56
-pSelect (5'P-GGGGCCCGGTTCCCAGCTTTTG-3' with a
mutated KpnI site) were annealed with denatured
pBS-FLAG-B56
plasmid DNA. T4 DNA polymerase was added, and following
DNA synthesis, the gaps were ligated with T4 DNA ligase. The product
was digested with KpnI and transformed into mutS E. coli. Second-round selection was performed by isolating plasmid
DNA, digesting with KpnI, and transforming into DH5
. Plasmid DNA isolated from individual colonies was analyzed by restriction digestion and sequencing to confirm the success of mutation. Quadruple mutation of B56
(S18A, S28A, S323A, and S436A) was achieved by annealing pBS-FLAG-B56
/S28A with mutation primers MP-S18A (5'P-CCA TCT CGG CCG CGG AGA AAG TG-3'), MP-S323A (5'P-GGC CAA
AAA CCT GCG CTC AGA AAG AGG TGA TG-3'), and MP-436A (5'P-GAC CTT ACT
AGC GCA TAC AAA GCT G-3') and selection primer B56
-pSelect2 (5'P-GAT
ACC GTC GAG CTC GAG GGG G-3'). B56
mutant fragments were then
recloned into the pET28C expression vector, and proteins were expressed
and purified as described above.
PAA assay and tryptic phosphopeptide mapping of B56
phosphorylation sites.
Two-dimensional separation of phosphoamino
acids (PAA) and phosphopeptides of B56
using thin-layer cellulose
(TLC) plates was performed as described previously (5).
Recombinant B56
was phosphorylated by PKR and labeled in vitro with
[
-32P]ATP as described above, and the proteins were
separated on a sodium dodecyl sulfate (SDS)-8% polyacrylamide gel,
excised from the dried gel, eluted out of the gel slice with 50 mM
NH4HCO3, and precipitated with 20% cold
trichloroacetic acid. For PAA assay, the sample was resuspended in 100 µl of 5.7 M HCl and boiled at 110°C for 1 h. After hydrolysis,
the sample was dried in a Speed-Vac (Savant) and resuspended in pH 1.9 buffer (2.2% formic acid and 7.8% acetic acid), which contains 15 parts of buffer to 1 part of cold PAA standards (1.0 mg [each] of
phosphoserine, phosphothreonine, and phosphotyrosine per ml) (Sigma).
The sample was applied to a TLC plate (C.B.S. Scientific Company,
Inc.), and two-dimensional electrophoresis was carried out using the
Hunter thin-layer peptide mapping electrophoresis system (model no.
HTLE-7000; C.B.S.). The first-dimension separation was done with pH 1.9 buffer at a constant 1,500 V for 30 min, and the second-dimension
separation was done in pH 3.5 buffer (5% acetic acid and 2.5%
pyridine) at a constant 1,300 V for 25 min. PAA standard colors were
developed by spraying 0.25% ninhydrin in acetone and baking the plate
at 65°C for 30 min.
For peptide mapping, the sample was dissolved after trichloroacetic
acid precipitation in 100 µl of cold perfomic acid, oxidized at 0°C
for 60 min, and lyophilized in a Speed-Vac. The oxidized protein pellet
was resuspended in 50 µl of 50 mM ammonium bicarbonate (pH 8.0 to
8.3), and TPCK (tolylsulfonyl phenylalanyl chloromethyl ketone)-trypsin
(10 µg) was added to cleave the protein at 37°C overnight. After
digestion and lyophilization, the peptides were separated on TLC plates
in the first dimension by electrophoresis using the Hunter thin-layer
peptide mapping electrophoresis system in pH 1.9 buffer at 1,600 V for
1 h. The second-dimension separation was performed by
chromatography using an organic solvent buffer (37.5%
n-butanol, 25% pyridine, and 7.5% acetic acid) in a
chromatography tank. After overnight separation, the plate was dried
and exposed to an X-ray film.
In vitro phosphatase assay.
Approximately 2 µg of B56
was phosphorylated by PKR as described above. As an unphosphorylated
B56
control, the B56
was incubated in the same phosphorylation
reaction mixture except that no PKR was added. The reaction mixtures
were concentrated and washed with phosphatase reaction buffer (20 mM
MOPS [pH 7.2], 25 mM 2-mercaptoethanol, 10 mM MgCl2, 100 µg of bovine serum albumin per ml) without bovine serum albumin,
using a 0.5-ml ultrafree centrifugal filter device spin tube (Biomax
30K NMWL membrane; Millipore), and finally concentrated to 20 µl. For
the dephosphorylation of MBP by PP2A AC dimer (PP2Ac), 15 µl of MBP phosphorylation mixture (25 µg of MBP) was diluted to a
final volume of 200 µl with phosphatase assay buffer.
Dephosphorylation was initiated at 30°C with the addition of 150 ng
of PP2Ac (Upstate Biotechnologies). For dephosphorylation
of MBP by PP2A-B56
, 15 µl of MBP substrate mix was diluted to a
final volume of 180 µl with phosphatase assay buffer, and then 20 µl of B56
, either phosphorylated or not, was quickly mixed with
150 ng of PP2Ac and added to the reaction mixture. At each
time point (1, 2, 5, 10, and 20 min), 40 µl was sampled and 5 µl of
10× PP2A stop solution (50 mM EDTA, 1 M NaF, 20 mM NaPPi)
was added. All samples were analyzed on SDS-polyacrylamide gels and
exposed for PhosphorImager (Molecular Dynamics) analysis. Protein
phosphorylation was quantitated by ImageQuant version 1.1 software
after scanning the screen using a Storm PhosphorImager (Molecular
Dynamics). For the eIF2
dephosphorylation assay, recombinant eIF2
(10 µg) was phosphorylated by PKR in vitro, and the phosphorylation reaction product was washed with phosphatase reaction buffer and concentrated to 40 µl. For each phosphatase assay, 12 µl of eIF2
(3 µg) was used. The rest of the procedure was as for the MBP dephosphorylation assay described above.
Coimmunoprecipitation of human PKR with B56
.
Human
glioblastoma T98G cells were lysed with immunoprecipitation lysis
buffer (50 mM HEPES [pH 7.5], 0.5% NP-40, 150 mM NaCl, 2 mM EDTA,
10% glycerol, 1 mM dithiothreitol, 1 mM phenyl methyl sulfonyl
fluoride, 5 µg of leupeptin per ml, 2 µg of aprotinin per ml) on
ice for 30 min. The crude lysate was cleared by centrifugation at
14,000 × g for 20 min, and the supernatant was
collected. To assay the endogenous association between PKR and B56
,
1 to 3 mg of protein extract was used for immunoprecipitation with an antibody against human PKR (61). After addition of antibody, the lysate was incubated on ice for 30 min and mixed with 40 µl of
protein G-conjugated Sepharose resin (Pharmacia), and the mixture was
agitated at 4°C overnight then washed with immunoprecipitation lysis
buffer. The proteins were separated with SDS-8% polyacrylamide gel
and transferred to an Immobilon-P membrane (Millipore). Western blotting was performed using a polyclonal antibody against human B56
(Santa Cruz). To assay kinase activation-dependent association of PKR
with recombinant B56
, T98G cell extract (200 µg) was
immunoprecipitated with a monoclonal antibody against human PKR as
described above. After washing with immunoprecipitation lysis buffer,
the immunoprecipitates were washed three times with DBGA buffer.
Recombinant histidine-tagged B56
(1 µg) in 60 µl of kinase
reaction buffer (10 mM Tris-HCl [pH 7.6], 50 mM KCl, 2 mM Mg acetate,
7 mM 2-mercaptoethanol, 0.83 mM MnCl2, 100 µM ATP, 20%
glycerol) either with or without pIC (1 ng/µl) was added to the
immunoprecipitates, and the mixture was incubated at 30°C for 20 min.
Following washing with DBGA buffer, the proteins were separated with an
SDS-8% polyacrylamide gel and analyzed by Western blot assay using a
polyclonal antibody against human B56
. The membrane was stripped and
reprobed with a polyclonal antibody against human PKR. T98G and 2fTGH
cells (2 × 106) were also transfected with 4 µg of
FLAG-B56
expression plasmid DNA (pZeoSV-FLAG-B56
) using
Lipofectamine (Gibco BRL). After 24 h of transfection, the cells
were treated with 100 µg of pIC per ml in the presence of 100 nM
okadaic acid for 1 h. The cell lysates were prepared with cell
lysis buffer, and 2-mg cell lysates were used for immunoprecipitation
of FLAG-B56
with anti-FLAG M2 affinity gel (Sigma). The gel was
washed with cell lysis buffer after agitation at cold room overnight,
and the association of PKR was analyzed by SDS-polyacrylamide gel
electrophoresis (SDS-PAGE) followed by Western blotting using a
polyclonal antibody.
Preparation of endogenous PP2A.
Cell extracts was prepared
from HeLa S3 cells as described above. Anti-human PP2A C subunit
polyclonal antibody (4 µg) (Upstate Biotechnologies) was added to 200 µg of cell extract and incubated on ice for 30 min. Protein
G-Sepharose beads were mixed with the extract and agitated at 4°C
overnight, and the immunoprecipitates were washed with
immunoprecipitation lysis buffer and used in the kinase assay described above.
IEF-SDS-PAGE two-dimensional analysis of protein
phosphorylation.
Human 2fTGH cells and murine 3T3-like
pkr+/+ or pkr
/
fibroblasts (2 × 106) were transfected with 4 µg of
FLAG-B56
expression plasmid DNA pZeoSV-FLAG-B56
using
Lipofectamine reagent. After 24 h of transfection, the cells were
treated with 100 µg of pIC per ml in the presence of 100 nM okadaic
acid for 1 h. The cells were lysed with cell lysis buffer, and 2 mg of cell lysate was used for immunoprecipitation of FLAG-B56
with
anti-FLAG M2 affinity gel. FLAG-B56
was eluted from the gel by
adding 125 µl of rehydration buffer {8 M urea, 4%
3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate [CHAPS],
10 mM dithiothreitol, 0.2% Bio-Lytes 3/10}. IPG strips (7 cm, pH 5 to 8; Bio-Rad) were rehydrated with rehydration buffer containing
FLAG-B56
for 12 h before running isoelectric focusing (IEF).
The IEF electrophoresis was performed with a Protean IEF Cell (Bio-Rad)
according to the instruction manual. Focusing was carried out with 250 V for 15 min with a linear increase from 250 to 4,000 V for 2 h
and 4,000 V for 5 h. After focusing, the strips were laid on top
of SDS-polyacrylamide gels for second-dimension separation. B56
was
examined by Western blotting using a polyclonal antibody against B56
as mentioned above. eIF4E phosphorylation was assayed from 2fTGH cells
which were lysed directly with rehydration buffer. About 300 µg of
cell lysate was reabsorbed into 17-cm IPG strips (pH 3 to 10), and
IEF-PAGE separation was performed as described above. Western blotting
of eIF4E was performed using a monoclonal antibody against rabbit eIF4E
(Transduction Laboratories, Lexington, Ky.).
Transfection assays of exogenous luciferase expression.
COS-1 cells were plated in six-well plates at 3 × 105
cells per well. The following day six duplicated plates were
transfected with 200 ng of luciferase reporter construct pGL2p
(Promega), 1.5 µg of pZeoSV-B56
or pZeoSV vector, and 1.0 µg of
either pRC-PKR, pRC-PKR(K296R), or pRC vector. The cells were
transfected for 3 h using Lipofectamine Plus (Gibco BRL) according
to manufacturer's instructions. After 24 h, the cells were lysed
with 300 µl of 1× reporter lysis buffer (Promega), and 40 µl of
cell extract was assayed for luciferase activity. To examine the effect
of okadaic acid on protein expression, cells were transfected with pGL2p (200 ng) in the presence or absence of okadaic acid (100 nM).
After 3 h, the medium was replaced with complete Dulbecco modified
Eagle medium with or without 100 nM okadaic acid and incubated for a
further 4 h. Cell extracts were prepared and luciferase activity
was measured as described above. Transfection treatment of murine
3T3-like fibroblasts followed same protocol with the amount of DNA
described in the legend to Fig. 7. Okadaic acid treatment of
fibroblasts lasted overnight, as they are more resistant to okadaic
acid-induced apoptosis than COS-1 cells.
RT-PCR detection of luciferase mRNA.
3T3-like
pkr+/+ cells were cotransfected with 500 ng of
pGL2p and 1 µg of pZeoSV-B56
or pZeoSV as described earlier. The
cells which were transfected with vector pZeoSV either were left
untreated or were treated with 50 nM okadaic acid for 24 h.
DNA-free mRNA was isolated from the cells by using a High Pure RNA
Isolation Kit (Boehringer Mannheim). Reverse transcription (RT) was
performed with Superscript II from 1 µg of RNA sample according to
the instructions of the manufacturers (Gibco BRL). PCR of
luciferase or glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
was carried out with 1/10 of the RT sample, using 30 cycles of
denaturation at 94°C for 20 s, renaturation at 55°C for
20 s, and extension at 72°C for 30 s. Real-time SYBR Green
PCR was performed according to the instructions of the manufacturer (Perkin-Elmer Applied Biosystems).
 |
RESULTS |
Identification of B56
as a PKR-interacting protein.
To
identify PKR-interacting proteins, we performed a yeast two-hybrid
screen of a human HeLa S3 Gal4AD fusion cDNA library using mutant PKR
M3 (L362Q) Gal4BD fusion protein as bait. Since wild-type PKR inhibits
yeast cell growth (11), previous two-hybrid screens have
used catalytically inactive PKR (42). However, we reasoned
that kinase activity may be important for PKR substrate interactions
and therefore selected an L362Q mutant PKR which exhibits low residual
autophosphorylation activity but does not inhibit yeast growth
(7). A primary screen of the library identified 30 histidine-positive clones, 10 of which were positive for
-galactosidase expression. The cDNAs from these clones were
sequenced, and a BLAST search against nonredundant human nucleotide
sequences in the National Center for Biotechnology Information database
identified two known proteins, while the remainder represented novel
genes. The identified proteins are PP2A regulatory subunit B56
(37) and P76, also known as NF90 (26) or M-phase
phosphoprotein 4 (35). P76 was also identified as a
dsRNA-interacting protein and shown to be phosphorylated by PKR
(43). Since B56
is a regulatory subunit of PP2A, we
hypothesized that the interaction between PKR and B56
may represent
a mechanism by which PKR regulates PP2A activity.
B56
is a substrate for PKR in vitro.
The B56
cDNA
obtained from the initial library screen encoded a B56
protein with
a truncation of 97 amino acids from the amino terminus (37).
A full-length B56
cDNA was constructed by ligation with a cDNA
fragment encoding the corresponding amino-terminal peptide (see
Materials and Methods), and the recombinant protein was tested for
dsRNA-dependent phosphorylation by recombinant human PKR. In the
absence of the dsRNA analog pIC, recombinant PKR exhibited only a low
level of kinase activity which was insufficient to phosphorylate
B56
. However, when PKR was activated by dsRNA, B56
was
phosphorylated to a high level (Fig. 1A).
Phosphorylation of B56
can be also achieved by using glutathione
S-transferase fusion human PKR (data not shown).

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FIG. 1.
Assay of substrate phosphorylation of B56 and eIF2
by PKR. The proteins were separated by SDS-PAGE and visualized by
autoradiography. (A) Phosphorylation of B56 by recombinant His-PKR
in vitro. Recombinant B56 (200 ng) was mixed with 100 ng of
recombinant human PKR in kinase reaction buffer either in the presence
(lane 3) or in the absence (lane 2) of pIC. PKR autophosphorylation is
shown in lane 1. (B) Comparison of the substrate phosphorylation of
eIF2 and B56 by PKR. About 200 ng of recombinant B56 (lanes 3 and 4) or eIF2 (lanes 1 and 2) was reacted with 100 ng of
recombinant PKR in kinase reaction buffer either in the presence (lanes
1 and 3) or in the absence (lanes 2 and 4) of pIC. The weaker
autophosphorylation of PKR in the presence of eIF2 was due to
impurity in the eIF2 preparation (data not shown).
|
|
The relative efficiency of phosphorylation of B56
by PKR was
compared to that of the well-characterized substrate eIF2
(Fig. 1B).
While the basal level of kinase activity of PKR was unable to
phosphorylate B56
, eIF2
exhibited a low level of phosphorylation. However, activated PKR phosphorylated both substrates efficiently and
to comparable levels (Fig. 1B). A correlation between
autophosphorylation and substrate phosphorylation activity of PKR has
long been established (22, 44, 51). Although it may hold
true for eIF2
phosphorylation, the lack of basal phosphorylation of
B56
in this assay may reflect a unique property of the interaction
between PKR and B56
.
B56
is multiple phosphorylated on serine and threonine by
PKR.
PKR has been characterized as a Ser/Thr kinase, but no
consensus phosphorylation site has been described. To determine if B56
was phosphorylated on Ser/Thr by PKR, a PAA assay was performed on phosphorylated protein. Recombinant B56
was phosphorylated by PKR
in vitro and hydrolyzed by boiling HCl. The PAA were analyzed by
two-dimensional thin-layer electrophoresis. Compared with PAA standards
(Fig.
2A,
left panel), PKR phosphorylates B56
mainly on serine
residues and to a lesser extent also on threonine (Fig. 2A,
right panel).

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FIG. 2.
PAA assay (A) and peptide mapping (B) of B56
phosphorylation sites by PKR. (A) B56 was radioactively
phosphorylated by PKR in vitro and acid hydrolyzed. Amino acids were
separated on a TLC plate. PAA standards (p-Ser, p-Thr, and p-Tyr) were
also loaded and visualized by color reaction with 0.25% ninhydrin in
acetone (left panel). PAA in B56 phosphorylation by PKR were
visualized by autoradiography (right panel). ppi, free phosphate. (B)
Wild-type (panel 1), single point mutant (S28A) (panel 2), or quadruple
point mutant (S18AS28AS323AS436A) (panel 3) B56 was radioactively
phosphorylated by PKR in vitro and digested with TPCK-trypsin. Peptides
were separated on TLC plates with electrophoresis at the first
dimension and chromatography in the second dimension. The positions of
phosphopeptides were visualized by autoradiography. The individual
peptides were labeled as shown.
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To examine whether S18, S28, S323, and S436 are possible
candidates for PKR phosphorylation sites, mutant B56
proteins with a
single point mutation (S28A) or a quadruple point mutation
(S18AS28AS323AS436A) were prepared. Wild-type or mutant B56
was
phosphorylated by PKR in vitro and cleaved by TPCK-trypsin.
Phosphopeptides were separated on TLC plates with electrophoresis in
the first dimension and chromatography in the second dimension (Fig.
2B). PKR-phosphorylated wild-type B56
generated more than 10 tryptic
phosphopeptides (Fig. 2B, panel 1), indicating that B56
is
phosphorylated at multiple sites. Mutant B56
S28A generated most of
the same phosphopeptides as the wild type, except that peptides R5 and
R7 disappeared, suggesting that peptides R5 and R7 were phosphorylated
at S28 (Fig. 2B, panel 2). Since quadruple mutant B56
showed the
same peptide map as single mutant B56
S28A, the residues S18, S323, and S436 are not phosphorylated by PKR (Fig. 2B, panel 3).
Physical association between PKR and B56
requires kinase
activity of PKR.
Although recombinant B56
is an efficient
substrate for activated PKR, there is an absence of basal
phosphorylation of B56
by latent recombinant PKR (Fig. 1). To
determine whether activation of PKR was necessary to allow interaction
with B56
, we immunoprecipitated endogenous PKR from T98G cell
extracts, activated this with dsRNA, and added recombinant B56
.
Physical association between PKR and B56
can be detected only under
conditions where PKR is activated (Fig.
3A).



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FIG. 3.
Physical interaction between PKR and B56 . (A)
PKR was immunoprecipitated (IP) with monoclonal antibody from 200 µg
of T98G cell extract, either activated (lane 2) or not activated (lane
1) by pIC. Recombinant B56 was added and the immunoprecipitates were
washed, followed by SDS-PAGE and Western blotting assay with a
polyclonal antibody against B56 (top panel). The blot was stripped
and reprobed with a polyclonal antibody against human PKR (bottom
panel). (B) In vivo association between PKR and B56 . PKR was
immunoprecipitated with monoclonal antibody from 3 (lane 1), 2 (lane
2), and 1 (lane 3) mg of T98G cell extract, respectively. The proteins
were separated by SDS-PAGE, transferred to a membrane, and
immunoblotted with a polyclonal antibody against human B56 . Cell
extract (3 mg) without addition of anti-PKR monoclonal antibody was
used as a negative control (lane 4). Recombinant His-T7 B56 was used
as a positive control (lane 5). The lack of endogenous B56 in panel
A is likely due to the less amount of cell lysate. (C)
Autophosphorylation of PKR in human T98G and 2fTGH cells in response to
pIC treatment. Human T98G and 2fTGH cells were treated with pIC (100 µg/ml) for 1 h. PKR was immunoprecipitated from 150 µg of cell
lysate with monoclonal antibody. The kinase activity of PKR was assayed
in an in vitro autophosphorylation reaction in the presence of
[ -32P]ATP. (D) Western blot assay of PKR protein
levels in cells either treated or not treated with pIC. T98G or 2fTGH
cells were either treated or not treated with 100 µg of pIC per ml as
described above, and 150 µg of total cell lysate was assayed for PKR
protein level by Western blotting using a polyclonal antibody against
human PKR. (E) Activation of PKR in cells by pIC increases its affinity
with B56 . Human T98G or 2fTGH cells were transfected with
FLAG-B56 expression plasmid DNA (pZeoSV-FLAG-B56 ) (lanes 1, 2, 6, and 7) or vector DNA (pZeoSV) (lanes 3 and 8). Cells were treated with
100 µg of pIC per ml for 1 h (lanes 2 and 7).
Immunoprecipitation of FLAG-B56 was performed with anti-FLAG M2
affinity gel, and the association of PKR was detected by Western
blotting using an anti-human PKR polyclonal antibody (top panel).
Recombinant His-T7-B56 (lane 4) and His-PKR (lane 5) were also
included as positive controls. The polyclonal antibody against human
PKR has cross-reaction with His-T7-B56 because His-PKR was used as a
source to generate the polyclonal antibody. The membrane was also
stripped and reprobed with anti-human B56 polyclonal antibody to
examine B56 protein levels (bottom panel).
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To examine whether there is an association between PKR and B56
in
vivo, we performed a coimmunoprecipitation with a monoclonal antibody
against PKR (30) on T98G cell extracts followed by a Western
blot assay using a polyclonal antibody against B56
. Since use of a
moderate amount of cell extract (200 µg) for coimmunoprecipitation failed to detect the association of PKR with the endogenous B56
(Fig. 3A), we reasoned that endogenous PKR possesses low basal level
kinase activity and consequently associates with a smaller amount of
B56
. Accordingly, by using an increased amount of cell extract,
B56
could be detected by coimmunoprecipitation with PKR (Fig. 3B),
suggesting an endogenous interaction between PKR and B56
.
Since the interaction between PKR and B56
requires active PKR (Fig.
3A), the basal level of cellular PKR must be sufficient to allow the
endogenous constitutive association between PKR and B56
. If the
kinase activity of PKR is increased, we should also be able to see an
increase in the association between PKR and B56
. Treatment of human
T98G glioblastoma cells and 2fTGH fibroblasts with pIC resulted in the
activation of PKR as demonstrated by an autophosphorylation assay (Fig.
3C). This treatment did not cause an obvious increase in the PKR
protein level (Fig. 3D). In order to see the association between PKR
and B56
in response to pIC activation of PKR, we transfected both
T98G and 2fTGH cells with FLAG epitope B56
expression plasmid DNA to
enhance the B56
protein level and activated PKR in these cells with
pIC. The interaction between PKR and B56
was examined by
immunoprecipitation of B56
with anti-FLAG M2 affinity gel followed
by western blotting against human PKR. The results (Fig. 3E)
demonstrated that there is an increase in the association between PKR
and B56
when PKR is activated in cells treated with pIC.
Activation of PKR alters the isoelectric point of B56
.
B56
is a substrate for PKR in vitro and shows increased association
with PKR upon PKR activation in cells. This suggests that B56
should
be a physiological substrate for PKR in vivo. Accordingly, we
investigated whether the activation of PKR in the cell resulted in a
change in the phosphorylation level of B56
. Human 2fTGH fibroblasts
were transfected with FLAG-tagged B56
expression plasmid DNA and
treated with pIC to activate PKR protein. B56
was immunoprecipitated
from cell lysates and analyzed by two-dimensional IEF and SDS-PAGE to
determine the phosphorylation-induced change in its isoelectric point
(pI). The pI of B56
from untreated cells spans a range from 6.2 to
6.8, suggesting that B56
is phosphorylated at multiple sites,
consistent with the results of B56
phosphopeptide maps in vitro.
Treatment of cells with the PKR activator pIC caused a shift in the pI
of B56
toward a lower pH value, indicating an increase in acidic
forms of B56
, likely due to phosphorylation (Fig.
4A). To assess the possibility that the
pIC-induced pI shift in B56
is dependent on PKR, we transfected
pkr+/+ or pkr
/
fibroblasts with FLAG epitope B56
expression plasmid DNA and examined the pI status of FLAG-B56
after treatment of the cells with
pIC (Fig. 4B). The pI of B56
in murine fibroblasts ranges from 5.2 to 6.8. Treatment of pkr+/+ cells with pIC
caused a pI shift in B56
, with an increase its acidic forms compared
with untreated cells. This change is not observed in
pkr
/
cells. These observations indicate that
the pIC-induced pI shift of B56
toward acidic forms in cells results
from phosphorylation of B56
by pIC-activated PKR.

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FIG. 4.
Mobility shift of B56 in IEF in response to pIC
treatment of the cell. (A) Human 2fTGH cells were transfected with
FLAG-B56 expression plasmid DNA pZeoSV-FLAG-B56 . The cells were
either treated (bottom panel) or not treated (top panel) with 100 µg
of pIC per ml to activate PKR. B56 was immunoprecipitated from 2 mg
of cell lysate and separated in the first dimension with IEF in a
ready-strip IPG strip (pH range, 5 to 8; Bio-Rad) and in the second
dimension with an SDS-polyacrylamide gel. Western blotting with a
polyclonal antibody against human B56 was performed to detect
B56 . Recombinant His-T7-B56 was loaded at the rightmost side and
used as reference for alignment. B56 from 2fTGH cells showed pI
values varying from 6.2 to 6.8, but it is very likely that more acidic
forms of B56 failed to be detected because of a lower expression
level of B56 in 2fTGH cells compared with murine fibroblasts in
panel B. (B) pI of FLAG-B56 from pkr+/+ or
pkr / cells treated or not treated with pIC.
The experimental procedure is same as for 2fTGH cells in panel A. The
pI values range from 5.3 to 6.8.
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Phosphorylation of B56
by PKR modulates PP2A activity.
B56
is a regulatory subunit of PP2A and has been found to tightly
associate with PP2Ac (37). Although it is also a
phosphoprotein in vivo, it is not clear whether this phosphorylation
plays a role in regulating PP2A activity. To determine if B56
phosphorylation by PKR could regulate PP2A activity in vitro, a
phosphatase activity assay was performed using MBP phosphorylated by
PKC as the substrate for PP2A (Fig. 5A).
The phosphatase activities of three
forms of PP2A were compared. PP2Ac was commercially
obtained. PP2Ac-B56
, which is a trimeric holoenzyme with
unphosphorylated B56
as the regulatory subunit, was prepared by
mixing recombinant B56
with PP2Ac.
PP2Ac-B56
-p, which is a trimeric holoenzyme with
phosphorylated B56
as the regulatory subunit, was prepared by mixing
PKR-phosphorylated B56
with PP2Ac. Excess B56
was
added to ensure that PP2A existed as the form of AC-B56
trimeric
holoenzyme. The results (Fig. 5A and B) show that whereas
unphosphorylated B56
decreased PP2Ac activity on MBP,
phosphorylation of B56
by PKR blocked this effect and increased the
phosphatase activity of PP2Ac-B56
holoenzyme. Thus,
PP2Ac-B56
holoenzyme was less active than
PP2Ac, but when B56
was phosphorylated by PKR,
phosphatase activity on MBP was enhanced. Similar results were obtained
when recombinant eIF2
protein phosphorylated by PKR was used as a
substrate for PP2A (Fig. 5C and D), although the recombinant eIF2
is
a less efficient substrate for PP2A than MBP.


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FIG. 5.
Modulation of PP2A activity on MBP or eIF2 via
phosphorylation of B56 by PKR. (A) In vitro PP2A activity on
PKC-phosphorylated MBP. MBP was phosphorylated by PKC with
radioactive ATP ([ -32P]ATP) and used as a substrate
for PP2A (either PP2Ac dimer, PP2Ac-B56 , or
phosphorylated PP2Ac-B56 ). B56 either phosphorylated
or not by PKR was quickly premixed with PP2Ac to generate
the PP2Ac-B56 or PP2Ac-B56 -p form of
PP2A. Dephosphorylation was carried out at 30°C, and equal amounts of
reaction mixture were taken out after 1, 2, 5, 10, and 20 min. The
reaction was stopped by adding phosphatase stop solution and separated
by SDS-12% PAGE. Lane 1, starting level of MBP phosphorylation; lanes
2 to 16, time courses of dephosphorylation of MBP; lane 17, input of
PKR and B56 in PP2Ac-B56 -p reaction. (B) Quantitation
of the data in panel A. MBP phosphorylation levels were quantitated by
ImageQuant version 1.1 analysis following scanning of the gel with a
Storm PhosphorImager. (C) In vitro PP2A activity on PKR-phosphorylated
eIF2 . Recombinant eIF2 was phosphorylated by recombinant PKR with
radioactive ATP ([ -32P]ATP) and used as a substrate
for PP2A (either AC dimer PP2Ac, PP2Ac-B56 ,
or PP2Ac-B56 -p). Dephosphorylation of eIF2 was
carried out in the same way as for MBP dephosphorylation. Lane 1, starting level of eIF2 phosphorylation; lanes 2 to 6, time course of
dephosphorylation of eIF2 by PP2Ac core dimer; lanes 7 to 11, time course of dephosphorylation of eIF2 by
PP2Ac-B56 ; lanes 12 to 16, time course of
dephosphorylation of eIF2 by PP2Ac-B56 -p; lane 17, Input of PKR and B56 in PP2Ac-B56 -p reaction. (D)
eIF2 phosphorylation levels were quantitated by ImageQuant version
1.1 analysis following scanning of the gel with a Storm PhosphorImager.
The abnormal eIF2 phosphorylation percentage with
PP2Ac-B56 and PP2Ac-B56 -p at the 5-min
time point is likely due to the undermeasurement of the initial eIF2
phosphorylation.
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B56
is a target for dephosphorylation by PP2A.
In the in
vitro phosphatase activity assay, we observed that the phosphorylation
level of B56
was progressively reduced over time, suggesting that
B56
itself can be dephosphorylated by PP2A (Fig. 5). This
observation was confirmed by an in vitro B56
dephosphorylation assay
using immunoprecipitated PP2A (Fig. 6).
When okadaic acid was included to inhibit PP2A activity, PKR was able
to phosphorylate B56
to a maximal level as determined by labeling
with [
-32P]ATP, whereas in the absence of okadaic
acid, B56
phosphorylation was greatly reduced. The finding that
B56
is a target for PP2A suggests that there is an autoregulatory
mechanism for PP2A activity.

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FIG. 6.
Phospho-B56 is dephosphorylated by PP2A. Endogenous
PP2A was immunoprecipitated from HeLa S3 cells and mixed with
recombinant B56 phosphorylated by PKR in the presence or absence of
5 nM okadaic acid at 30°C for 20 min. The proteins were separated on
an SDS-polyacrylamide gel, and an autoradiograph of the dried gel is
shown.
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PKR inhibits the stimulatory effect of B56
on protein
expression.
The identification of B56
as a novel PKR substrate
that physically associates with PKR begs the question of the
physiological significance of this interaction. Although B56
may
direct PP2A to regulate the phosphorylation status and the activity of
PKR, the activity of PP2A on PKR is weak (Fig. 6). Since in vitro
phosphatase activity assays showed that phosphorylation of B56
by
PKR could modulate PP2A activity, we hypothesized that PKR can alter
PP2A activity by phosphorylating B56
and affect downstream cellular activities. However, a direct assay of PP2A phosphatase activity immunoprecipitated from the human cells treated with pIC did not show
much difference from that from untreated cells (data not shown). This
is not unexpected, since B56
is also likely a target for
dephosphorylation by PP2A itself (Fig. 6). Therefore, we sought an
alternate way to examine the alteration of PP2A activity in vivo
resulting from the interaction between PKR and B56
. We found that
treatment of cells (COS-1, pkr+/+, or
pkr
/
fibroblasts) with the PP2A inhibitor
okadaic acid resulted in enhanced expression from a transfected
luciferase reporter plasmid, pGL2p, whose luciferase expression is
driven by a constitutive simian virus 40 promoter (Fig.
7A). This
effect can be observed with a concentration of okadaic acid of less
than 10 nM (Fig. 7B). Since PP2A is much more sensitive to okadaic acid
than PP1 is, these results support a role for PP2A in regulating
protein expression. To examine if overexpression of B56
could
influence PP2A activity in this assay and if this activity could be
modulated by coexpression with PKR, we cotransfected COS-1 cells with
pGL2p and a construct expressing B56
(pZeoSV-B56
), wild-type
human PKR (pRC-PKR), or dominant-negative mutant PKR K296R (pRC-K296R) (Fig. 7C, left panel). Since translational control by PKR mediated through eIF2
phosphorylation is a well-established PKR function, luciferase expression in transfected COS-1 cells will be altered by
expression of PKR alone (7, 60). In accord with previous reports, wild-type PKR reduces luciferase expression in this assay whereas cotransfection with catalytically inactive PKR results in
enhanced expression from the reporter (Fig. 7C, bars 3 and 5).
Transfection with the B56
expression construct alone resulted in
enhanced luciferase expression, which could be abrogated by coexpression of wild-type PKR (Fig. 7C, bars 2 and 4). Cotransfection of B56
with mutant PKR K296R resulted in striking enhancement of
protein synthesis (Fig. 7C, bar 6). These results suggest that overexpression of B56
in COS-1 cells is able to modulate PP2A activity to enhance protein synthesis. This effect can be inhibited by
PKR, most likely via a functional interaction with and phosphorylation of B56
by PKR. This observation was confirmed when the experiment was repeated with a murine fibroblast cell line in which the effect of
B56
is completely suppressed when cotransfection is with wild-type PKR (Fig. 7C, right panel). The PKR-dependent modulation of PP2A activity was supported by comparing the luciferase expression in
pkr-null cells transfected with B56
with that in
wild-type cells transfected with B56
. The results show that B56
is more active in the absence of PKR (Fig. 7D).


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FIG. 7.
Stimulation of protein synthesis by B56 is inhibited
by PKR. (A) The PP2A inhibitor okadaic acid (OA) stimulates exogenous
luciferase expression in cells. COS-1 (left panel),
pkr+/+ (middle panel), or
pkr / (right panel) cells were transfected
with luciferase expression vector pGL2p (200 ng in COS-1 cells and 500 ng in 3T3-like cells) and treated with 100 nM OA (right bars) or left
untreated (left bars). Six duplicate samples were prepared for COS-1
cells, and four duplicate samples were prepared for fibroblasts. (B) OA
sensitivity assay of exogenous luciferase expression in
pkr+/+ cells. pkr+/+
cells were transfected with 200 ng of luciferase expression vector
pGL2p and treated with different concentrations of OA. Luciferase units
were measured after 24 h of transfection and plotted as relative
units against an untreated control. Triplicate samples were assayed.
(C) A luciferase reporter, pGL2p (200 ng), was cotransfected into COS-1
cells (left panel) with B56 expression construct pZeoSV-B56 (bars
2, 4, and 6) (1.5 µg), wild-type PKR expression construct pRC-PKR(wt)
(bars 3 and 4) (1 µg), or mutant PKR construct pRC-PKR(K296R) (bars 5 and 6) (1 µg). pGL2p (200 ng) was cotransfected into
pkr+/+ cells (right panel) with B56
expression construct pZeoSV-B56 (bars 2, 4, and 6) (0.5 µg),
wild-type PKR expression construct pRC-PKR(wt) (bars 3 and 4) (0.5 µg), or mutant PKR construct pRC-PKR(K296R) (bars 5 and 6) (0.5 µg). Cell extracts were prepared 24 h after transfection and
assayed for luciferase activity, and the values from the means of six
(COS-1) or three (pkr+/+) duplicate samples were
plotted. (D) Increased expression of exogenous luciferase in
pkr / cells transfected with B56 .
pkr-null cells and wild-type cells were transfected with 200 ng of pGL2p. The cells were also cotransfected with 1 µg of either
pZeoSV- -gal or pZeoSV-B56 . Luciferase units were measured in
24 h after the start of transfection. The mean value from four
duplicate samples each was plotted. Error bars indicate standard
deviations.
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PKR may modulate PP2A activity to regulate eIF4E
phosphorylation.
The phosphorylation of eIF2
to inhibit protein
translation is a well-established mechanism for PKR-dependent
regulation of protein translation. However, the luciferase transfection
assay results (Fig. 7) indicate that there is likely a novel mechanism involving PKR upregulation of PP2A activity. When the luciferase mRNA
levels in pkr+/+ cells transfected with pGL2p
were compared with those in transfected cells treated with okadaic acid
or cells which were also cotransfected with B56
by RT-PCR (Fig.
8) or by SYBR Green assay (data not shown), no obvious changes in luciferase mRNA levels were seen, indicating that PP2A is acting at the translational level. Since phosphorylation of eIF4E at serine 209 (25, 31) plays an
important role in protein translation initiation, we examined whether
expression of B56
or activation of PKR can regulate eIF4E
dephosphorylation. Untreated cell extracts analyzed by IEF-PAGE
revealed a high percentage of unphosphorylated eIF4E (Fig.
9, panel 1). Treatment with okadaic acid
caused an increased level of eIF4E phosphorylation (Fig. 9, panel 2),
consistent with enhanced protein translation (Fig. 7). Transfection of
2fTGH cells with B56
expression DNA also resulted in an increased
level of eIF4E phosphorylation, likely due to decreased PP2A activity
(Fig. 9, panel 3). Interestingly, when 2fTGH cells transfected with a
B56
expression plasmid were treated with pIC to activate PKR, the
eIF4E phosphorylation level was decreased compared with that in
untreated cells (Fig. 9, panel 4). These data suggest that PKR can
phosphorylate B56
to increase PP2A activity, resulting in decreased
eIF4E phosphorylation.

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FIG. 8.
RT-PCR assay of luciferase mRNA.
pkr+/+ cells were cotransfected with 500 ng of
pGL2p and 1 µg of pZeoSV (DNA samples 1, 2, 3, and 4 [lanes 1, 2, 3, 4, 7, 8, 9, 10, 13, 14, 15, and 16]) or pZeoSV-B56 (DNA samples 5 and 6 [lanes 5, 6, 11, 12, 17, and 18]) and either treated with 50 nM
okadaic acid overnight (DNA samples 3 and 4 [lanes 3, 4, 9, 10, 15, and 16]) or left untreated (DNA samples 1 and 2 [lanes 1, 2, 7, 8, 13, and 14]). After 24 h of transfection, total cell RNA was
prepared (see Materials and Methods) and RT was performed with 1 µg
of total RNA primed with oligo(dT) by SuperScriptase II (lanes 1 to 6 and 13 to 18). PCR was carried out with two primers derived from
luciferase (lanes 1 to 12) or GAPDH as a control for RNA input (lanes
13 to 18). A PCR without template DNA was also included (lane 19). RNA
samples that were not reverse transcribed were also used as templates
for luciferase PCR to check the level of plasmid contamination (lanes 7 to 12).
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FIG. 9.
IEF-SDS-PAGE analysis of eIF4E phosphorylation in 2fTGH
cells. 2fTGH cells were either left untreated (panel 1), treated with
25 nM okadaic acid (OA) for 20 h (panel 2), transfected with
B56 expression plasmid DNA pZeoSV-B56 (panel 3), or transfected
with pZeoSV-B56 and then treated with 100 µg of pIC per ml for
1 h (panel 4). Cells were lysed, and proteins from 300 µg of
cell extract were separated with IEF-SDS-PAGE two-dimensional
electrophoresis. eIF4E protein was detected by Western blotting using a
monoclonal antibody against rabbit eIF-4E. Phosphorylated eIF4E has a
lower isoelectric point and migrates to a lower pH position than
unphosphorylated eIF4E.
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DISCUSSION |
PKR is an established eIF2
kinase and plays an important role
in translational control. In fact, thus far, eIF2
is the only well-known physiological substrate established in vivo for PKR. However, there is an increasing amount of evidence supporting a role
for PKR in different cellular activities, including transcription, apoptosis, and tumorigenesis. Therefore, it is likely that there are
other physiologically important substrates for PKR. Identifying such
substrates has become a primary obstacle in understanding PKR function,
but yeast two-hybrid screening has provided a powerful tool to obtain
interacting proteins (34). However, obtaining proteins which
interact with active PKR by using yeast two-hybrid screening has been
precluded because of the growth-inhibitory characteristics of PKR.
Recently we described a PKR mutant with reduced kinase activity that
retained wild-type affinity for eIF2
(7). Using this
mutant in a two-hybrid screening has allowed us to identify two novel
substrates for PKR, DRBP76 (43) and B56
.
B56
is a cytosolic member of B' (B56) family and is expressed
ubiquitously in many cell types (37). Compared to eIF2
, B56
exhibits different features in its phosphorylation by PKR in
vitro. B56
does not interact with or become phosphorylated efficiently by PKR unless PKR is activated by dsRNA (Fig. 1). Nevertheless, some constitutive association between PKR and B56
was
observed in vivo (Fig. 3B and E), suggesting interaction likely reflecting basal PKR activity. The isolation of B56
by two-hybrid screening using the PKR M3 mutant with residual kinase activity supports this. The PKR-interacting domain on B56
may be distinct from the phosphorylation sites, since the PKR monoclonal antibody used
in this study interferes with B56
phosphorylation by PKR (data not
shown). In contrast, the phosphorylation of eIF2 is not affected by the
monoclonal antibody (30).
B56
harbors multiple phosphorylation sites, and this is indicated
from both in vitro B56
tryptic phosphopeptide mapping and in vivo
B56
IEF-SDS-PAGE two-dimensional analysis. Although B56
is
phosphorylated by PKR at S28 in vitro (Fig. 2), whether it is a
physiological phosphoacceptor in vivo is not known. Since S28A mutant
B56
retains the ability to be phosphorylated by PKR efficiently, the
significance of phosphorylation of B56
by PKR at site S28 remains to
be established. In vivo, B56
exhibits a wide range of isoelectric
point values (pI 5.3 to 6.8 in murine fibroblasts [Fig. 4]), which
may correspond to various phosphorylated states. Certainly PKR is not
the only kinase that regulates the phosphorylation of B56
, because
in pkr-null cells B56
still exhibits differentially
phosphorylated forms. Other kinases capable of phosphorylating B56
likely include PKC, PKA, and casein kinase II, since B56
has
consensus sequences for these kinases. We confirmed that B56
is
phosphorylated by PKC in vitro (data not shown). The regulation of
B56
at multiple phosphoacceptor sites by different kinases suggests
a previously unidentified mechanism by which kinases interact with PP2A.
There are two possible physiological consequences resulting from the
interaction between PKR and B56
. B56
may direct PP2A to
dephosphorylate PKR, resulting in downregulation of PKR activity. PKR
phosphorylation of B56
could cause either direct or indirect downregulation of PKR activity by activating dephosphorylation of PKR
by PP2A. However, PKR is a poor substrate for PP2A (Fig. 6), and the
major PKR phosphatase is likely PP1 (50). PKR
dephosphorylation may be PP2A mediated in vivo, but cells transiently
expressing B56
and treated with pIC showed no difference in the time
course of PKR activation compared to untransfected cells (data not
shown). Therefore, we concluded that it is unlikely that B56
directs PP2A to dephosphorylate PKR. PKR may phosphorylate B56
to regulate PP2A activity in vivo. The in vitro phosphatase assay demonstrated that
phosphorylation of B56
by PKR could modulate PP2A activity, which
was reflected by an increase in phosphatase activity on MBP and
recombinant eIF2
(Fig. 5). However, direct evidence for PKR
phosphorylation of B56
and modulation of PP2A activity is difficult
to obtain due to PP2A dephosphorylating B56
(Fig. 6). Nevertheless,
the alteration of PP2A activity by PKR shown indirectly by transfection
assays in COS-1 cells and murine fibroblasts (Fig. 7) suggests an in
vivo mechanism. Transiently expressed B56
can form trimeric PP2A
either by interacting with free AC core dimer or by replacing other B
subunits in the PP2A trimeric complex. This change in PP2A oligomeric
forms could alter PP2A activity or localization. Overexpressing B56
causes an upregulation of protein synthesis. PKR inhibits this effect,
probably by phosphorylating B56
. A model can be proposed from these
results which is based on PKR phosphorylation of B56
causing an
increase in PP2A activity (Fig. 10).
Increased PP2A activity likely affects different cellular activities
including translation, transcription, apoptosis, and cell cycle
regulation, processes in which PKR has also been implicated (reviewed
in references 13 and 57).

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FIG. 10.
Schematic model representing the modulation of PP2A
activity by phosphorylation of B56 by PKR. PKR is activated by dsRNA
and phosphorylates B56 . Phosphorylation of B56 likely enhances
enzymatic activity of the PP2Ac-B56 trimeric complex and alters cell
activities by modulating the phosphorylation levels of downst |
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