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Molecular and Cellular Biology, September 2000, p. 6923-6934, Vol. 20, No. 18
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Sls1p Stimulates Sec63p-Mediated Activation of
Kar2p in a Conformation-Dependent Manner in the Yeast Endoplasmic
Reticulum
Mehdi
Kabani,
Jean-Marie
Beckerich, and
Claude
Gaillardin*
Laboratoire de Génétique
Moléculaire et Cellulaire, INRA-INA.PG-CNRS, 78850 Thiverval-Grignon, France
Received 7 April 2000/Returned for modification 2 May 2000/Accepted 20 June 2000
 |
ABSTRACT |
We previously characterized the SLS1 gene in the yeast
Yarrowia lipolytica and showed that it interacts physically
with YlKar2p to promote translocation across the
endoplasmic-reticulum membrane (A. Boisramé, M. Kabani, J. M. Beckerich, E. Hartmann, and C. Gaillardin, J. Biol. Chem.
273:30903-30908, 1998). A Y. lipolytica Kar2p mutant was
isolated that restored interaction with an Sls1p mutant, suggesting
that the interaction with Sls1p could be nucleotide and/or conformation
dependent. This result was used as a working hypothesis for more
accurate investigations in Saccharomyces cerevisiae. We
show by two-hybrid an in vitro assays that the S. cerevisiae homologue of Sls1p interacts with ScKar2p.
Using dominant lethal mutants of ScKar2p, we were able to
show that ScSls1p preferentially interacts with the
ADP-bound conformation of the molecular chaperone. Synthetic lethality
was observed between
Scsls1 and translocation-deficient kar2 or sec63-1 mutants, providing in vivo
evidence for a role of ScSls1p in protein translocation.
Synthetic lethality was also observed with ER-associated degradation
and folding-deficient kar2 mutants, strongly suggesting
that Sls1p functions are not restricted to the translocation process.
We show that Sls1p stimulates in a dose-dependent manner the binding of
ScKar2p on the lumenal J domain of Sec63p fused to
glutathione S-transferase. Moreover, Sls1p is shown to
promote the Sec63p-mediated activation of Kar2p's ATPase activity. Our
data strongly suggest that Sls1p could be the first GrpE-like protein
described in the endoplasmic reticulum.
 |
INTRODUCTION |
Protein translocation across the
endoplasmic reticulum (ER) membrane is the first step of the secretory
pathway in eukaryotic cells and may occur either cotranslationally or
posttranslationally (for reviews, see references 13,
33, and 58). In the cotranslational pathway, the signal peptide of a nascent secretory polypeptide is
recognized when emerging from the ribosome by the signal recognition particle (SRP), thereby causing a translational arrest or pausing. Targeting to the ER membrane is ensured by an interaction of SRP with
its receptor (21, 22), and the ribosome-nascent chain complex is then transferred to the translocon, a multicomponent complex
that forms an aqueous pore through the ER membrane (66). Three to four heterotrimers composed of the Sec61
, Sec61
, and Sec61
proteins (Sec61p, Sbh1p, and Sss1p, respectively in
Saccharomyces cerevisiae) oligomerize to form the pore
(26). In mammal cells, the TRAM protein is also present as a
core component of the translocon and is required for the translocation
of many but not all secretory polypeptides (23). Translation
proceeds, and the newly synthesized polypeptide is translocated through
the channel formed by the tight junction between the ribosome and the
translocation pore (2).
In S. cerevisiae, an SRP-independent translocation pathway
was described and is essential in this yeast (27, 29, 57). Secretory polypeptides are entirely synthesized in the cytosol and
maintained in a translocation-competent conformation by members of the
70-kDa class of heat-shock-cognate (Hsc70s) molecular chaperones (14). Targeting to the ER membrane is ensured by signal
peptide recognition by Sec62p (16), a subunit of the
heterotetrameric Sec62-Sec63p complex (also containing Sec71p and
Sec72p proteins) that associates with the Sec61 complex to form a
seven-component Sec complex (55). Translocation of the
polypeptide through the channel requires Kar2p, a lumenal member of the
70-kDa class of heat shock proteins (Hsp70s) (termed BiP or GRP78 in
mammalian cells), which was recently shown to act as a molecular
ratchet, binding to the translocating peptide and preventing it from
moving backward to the cytosol (43). Kar2p was also shown to
be required in the cotranslational pathway, probably via the same
mechanism (8).
Kar2p is involved in protein translocation, in folding, in
ER-associated degradation (ERAD), and in the maintenance of the permeability barrier between the ER and the cytosol by sealing the pore
through a direct or indirect interaction with its lumenal face
(20, 25, 43). This functional diversity of Kar2p relies on
the intrinsic properties of this class of molecular chaperones, as well
as on its interaction with regulatory proteins. As for all members of
the Hsp70/Hsc70 family, Kar2p is composed of three domains, a 44-kDa
regulatory N-terminal ATPase domain, a 18-kDa peptide binding
pocket, and a 10-kDa C-terminal domain (11, 47). Binding and
release of substrate peptides is regulated by ATP; both are fast in the
ATP-bound form and slow in the ADP-bound form (54, 62). The
weak ATPase activity of the Hsp70 is stimulated by members of the
DnaJ family, which share a common 70-amino-acid J domain. ATP
hydrolysis is followed by a conformational change that stabilizes the
interaction of the substrate peptide; the C-terminal domain is
predicted to form a lid over the peptide-binding pocket
(69). Nucleotide exchange, which induces peptide release, is
stimulated by GrpE in Escherichia coli (39) and
Mge1p in mitochondria (46), and it does not seem to be a
limiting step in the other eukaryotic cellular compartments, since only
the BAG1 protein was identified as an ADP-ATP exchanger for the
cytosolic mammalian Hsc70 (30). In the yeast ER, the
transmembrane protein Sec63p (17, 60) bears a lumenal J
domain, and both genetic (63) and biochemical (9, 12,
40, 41, 44) data show that this protein binds to Kar2p,
recruiting it to the translocon and activating its ATPase activity.
The thermosensitive sec63-1 mutant that contains a point
mutation in the J domain was shown to be defective in binding to Kar2p;
it accumulates untranslocated preproteins in the cytosol in a way
similar to kar2 mutants. ER microsomes prepared from several
kar2 mutants and from a sec63-1 strain are
defective for both post- and cotranslational translocation in vitro
(8, 59). Kar2p and Sec63p are required for peptide release
from the initial recognition complex at the cytosolic face of the ER
and for completion of preprotein passage through the translocation
channel (40).
Our previous studies in the yeast Yarrowia lipolytica
revealed that the cotranslational pathway is essential in this
organism. Inactivation of the genes encoding the 7S RNA component of
SRP is lethal (28), whereas deletion of YlSRP54
and YlSEC65 results in very slow growth (38, 61),
suggesting that SRP, as in Schizosaccharomyces pombe
(7) and in contrast to S. cerevisiae, plays an
essential function in Y. lipolytica. The purification of
ribosome-associated membrane proteins, which are indicative of
cotranslational translocons, showed that more than 75% of the Sec61
complex was associated with the ribosomes (i.e., the cotranslational
translocon), whereas only 30% was in the ribosomal pellet fraction in
S. cerevisiae, further demonstrating the respective
importance of cotranslational or posttranslational translocation in
each organism (6). Genetic screens in Y. lipolytica led to the cloning of several new genes (4, 5,
42). Among these, the SLS1 gene was identified as a
mutation that led to synthetic lethality in combination with a
thermosensitive 7S RNA mutation (5). The SLS1
gene product was shown to be an ER resident protein, and its disruption
affected growth at high temperature and translocation of the secreted
reporter protein AEP (alkaline extracellular protease).
Immunoprecipitation and two-hybrid experiments showed that Sls1p is
located in proximity with the translocon and interacts with the
ATPase domain of Kar2p (6, 34). This interaction was
shown to be required for efficient translocation of AEP. Indeed, the
sls1.5 mutant unable to bind to Kar2p was defective in AEP
synthesis and translocation, suggesting that the function(s) of Sls1p
rely on its ability to bind to Kar2p (6). The finding of a
new Hsp70 cofactor further demonstrates that the modulation and
specificity of the chaperone's activity is ensured by several classes
of proteins.
We demonstrate here by two-hybrid and genetic approaches that the
S. cerevisiae Sls1p homologue interacts with Kar2p to
promote protein translocation across the ER membrane. The S. cerevisiae SLS1 gene (ScSLS1) is not essential but
genetic interactions with kar2 and sec63 mutants
show an in vivo role of ScSls1p not only in protein
translocation but also in ERAD and folding. We show that the
interaction between ScSls1p and ScKar2p depends
on the conformational state of the chaperone protein. In vitro binding assays show that Sls1p stimulates recruitment of Kar2p by Sec63p and
promotes the Sec63p-mediated ATPase activation, highlighting the
physiological importance of nonessential partners in such complex
mechanisms as protein translocation and folding.
 |
MATERIALS AND METHODS |
Strains and media.
The E. coli strains used were
DH5
[endA1 hsdR17 supE44 thi-1 recA1 gyrA relA1
(lacZYA-argF)U169 deoR (
80
dlac
[lacZ° M15])], BL21 [F
ompT hsdS (rB
,
mB
) gal), and XL1red [andA1
gyrA96 thi-1 hsdR17 supE44 relA1 lac mutD5 mutS mutT
Tn10 (Tetr)] (Stratagene). E. coli
strains were grown in Luria-Bertani LB or 2×YT medium supplemented
with ampicillin for plasmid selection (1). Yeast strains
used in this study are described in Table 1. Yeasts were grown on YPD medium or on
YNB minimal medium as described earlier (34).
DNA manipulation techniques.
Standard techniques were
used (1). Restriction enzymes were used according to the
manufacturer's instructions (Gibco-BRL and Biolabs). Ready-To-Go
PCR beads (Pharmacia Biotech) and Crocodile III thermocycler (Appligene
Oncor) were used for PCR analyses. Sequencing was done as described
earlier (34).
Cloning of ScSLS1, ScKAR2, and
construction of Scsls1.5.
The gene encoding
ScSLS1 (YOL031c) was amplified by PCR of genomic DNA. The
oligonucleotides used were ScSls1
(5'-CGCGGGATCCCATCTGGAGGCGAAATC-3') and
ScSls1
(5'-CGCGGATCCTATGAGCCATGGGGTTGC-3'), which
allowed cloning in the pBluescript SK(
) vector (Stratagene) via
BamHI sites (underlined). The cloned PCR product was
sequenced, and it contained residues 30 to 413 (after the signal
sequence cleavage site and before the ER retention signal RDEL). The
Scsls1.5 mutant was obtained by in vitro site-directed
(37) deletion of amino acids 365 to 369 (FLNWL) using the
Scsls1.5 oligonucleotide (5'-CGATCAACAAAGGG/GCGCAACAATGTAAAGC-3'). The sequence encoding ScKAR2 was obtained by PCR of
genomic DNA with oligonucleotides ScKar2
(5'-CGCGGATCCTAGTTAGAGGTGCCGATG-3') and
ScKar2
(5'-CAGGGATCCCATCGTCATCTTCATCTTC-3'). Amplified
product was cloned in pBluescript SK(
) (Stratagene) via
BamHI sites (underlined), sequenced, and found to contain
amino acids 39 to 674.
Two-hybrid assays.
Plasmids pAS2
-YlSLS1 and
pACT2-YlKAR2 were the same as described previously
(6). The sequences encoding ScSLS1 and
Scsls1.5 cloned in pBluescript SK(
) (see above) were
recovered by BamHI digestion, gel electrophoresis, and
purification with the Qiagen gel extraction kit. Recovered inserts were
directly cloned in the BamHI site of pGAD-C2 (32)
to obtain an in-frame AD-Gal4-ScSLS1 or
AD-Gal4-Scsls1.5 fusion. The same method was used to clone the sequence encoding ScKAR2 in pGBD-C2 (32). The
plasmids pMR2619, pMR2620, and pMR2618 encoding the G246D, G247D, and
G274D kar2 mutants (45), respectively, were
digested by KpnI and AflII to obtain a 400-bp
fragment containing the mutations. The wild-type KpnI-AflII fragment was removed from the plasmid
pGBD-C2-ScKAR2 and replaced by the mutation-containing
fragments. Various combinations of these plasmids were introduced in
the two-hybrid PJ69-4A strain (32), and expression of the
reporter genes was determined as described by Boisrame et al.
(6) and Kabani et al. (34).
-Galactosidase
activity was determined as described elsewhere (36); given
values are an average of two measurements on each of three independent clones.
Disruption of ScSLS1.
The ScSLS1 gene, with
promoter and terminator regions, was amplified by PCR using
oligonucleotides ScSls1P
(5'-GCGCGTTACATAAATCGATAG-3') and
ScSls1T (5'-CGTTCAGCATGCATATAACT-3')
and cloned into the ClaI and SphI sites
(underlined) of pBluescript SK(
) vector. The region encoding amino
acids 40 to 260 of ScSLS1 was deleted by BglII restriction and replaced by the URA3 marker obtained by
digesting pFL61 plasmid (48) with BglII. The
resulting plasmid was digested by ClaI and SphI
to generate a disruption fragment that was used to transform the
wild-type and mutant strains (see Results).
Scsls1 strains were selected on minimal medium without uracil and checked for
the replacement of wild-type gene by the URA3-disrupted copy by PCR and Southern blotting.
In vivo assessment of translocation by immunodetection.
Strains were grown at 20°C (kar2-113 and
sec63-1) or 25°C (kar2-1, kar2-133,
and kar2-203) in yeast-peptone-dextrose (YPD) (with 0.003%
adenine) to mid-log exponential phase. An aliquot with an optical
density at 600 nm (OD600) of 3 was taken, and cultures were
shifted for 2 h at a semipermissive temperature (26 or 34°C,
respectively) before another aliquot of 3 OD600 was obtained. Samples were centrifuged, and cell pellets were resuspended in 500 µl of TE (see below) before the addition of 50 µl of NaOH (1.85 M) on ice. After a 10-min incubation, 50 µl of 50%
trichloroacetic acid was added, and samples were kept on ice for 1 h and then centrifuged at 4°C at 15,000 rpm (Sigma 2-MK rotor).
Protein pellets were resuspended in 70 µl of TE: 1 M Tris (2:1) plus
70 µl of twofold-concentrated sample buffer (100 mM Tris-Cl, pH 6.8;
4 mM EDTA; 4% sodium dodecyl sulfate [SDS]; 20% glycerol; 0.002% bromophenol blue). The mixture was heated at 95°C for 10 min. Then,
15 µl of each sample was separated by SDS-polyacrylamide gel
electrophoresis (PAGE) and transferred to a nitrocellulose membrane.
After incubation in TBS-Tween 20 plus 5% skim milk (Difco), membranes
were incubated with primary antibodies (antibodies to pre-pro-
-factor [pp
F], carboxypeptidase Y [CPY], Gas1p, and ScKar2p; all gifts from the Rosine Haguenauer-Tsapis
laboratory), washed, and incubated with anti-rabbit immunoglobulin G
(Fc) alkaline phosphatase-conjugated antibodies (Promega). Detection
was done using nitroblue tetrazolium and BCIP
(5-bromo-4-chloro-3-indolylphosphate) reagents from Promega according
to the manufacturer's instructions.
Purification of wild-type or mutant ScSls1p.
Sequences encoding ScSls1p and ScSls1.5p were
cloned in the BamHI site of pGEX-5X-1 plasmid (Pharmacia
Biotech) and transformed in BL21 E. coli strain. Then, 50 ml
of culture was grown in 2×YT containing 50 µg of ampicillin per ml
overnight at 28°C and diluted in 1 liter of the same medium. After
2 h at 28°C, IPTG
(isopropyl-
-D-thiogalactopyranoside) was added to a
final concentration of 0.2 mM, and cells were grown for an additional
3 h. Cells were harvested and washed once in water and once in
phosphate-buffered saline (PBS; pH 7.4)-2 mM EDTA, and the cell pellet
was then frozen at
20°C. The cell pellet was thawed and resuspended
in ~20 ml of sonication buffer (PBS, pH 7.4; 2 mM EDTA; 1 mM
-mercaptoethanol; 1 mM phenylmethylsulfonyl fluoride [PMSF]; 1 µg of leupeptin per ml; 1 µg of pepstatin A per ml; 1 mM
benzamidine). The cells were sonicated (Branson sonifier 250) for
30 s three to four times at a high setting, with 2 min on ice
between sonications. Sonicated cells were centrifuged at 12,000 rpm in
a Sorvall SA600 rotor for 10 min, and the supernatant was centrifuged
at 30,000 rpm in a Beckman 70 Ti rotor to obtain a clearer lysate. This
lysate was loaded on a 2-ml glutathione-Sepharose 4B column (Pharmacia
Biotech) equilibrated in sonication buffer plus 1% Triton X-100. The
column was washed sequentially with 30 ml of (i) sonication buffer;
(ii) sonication buffer plus 500 mM KCl; (iii) 50 mM Tris-Cl (pH
7.5)-10 mM magnesium acetate-200 mM potassium acetate-2 mM ATP, and
(iv) PBS glutathione S-transferase (GST)-ScSls1p
(or GST-ScSls1.5p) was eluted with 10 ml of elution buffer
(50 mM Tris-Cl, pH 8.0; 10 mM reduced glutathione; 5% glycerol). Then,
1-ml fractions were collected. A total of 5 µl of each fraction was
spotted onto a nitrocellulose membrane and stained with amido black
(Sigma). Peak fractions were pooled, dialyzed against 10 mM Tris-Cl (pH
8.0)-5% glycerol, and frozen at
80°C. SDS-PAGE followed by
Coomassie brilliant blue staining showed that GST fusion proteins were
purified to near homogeneity. GST alone was purified with the same
protocol from BL21 strain transformed with pGEX-5X-1.
To obtain untagged versions of
ScSls1p and
ScSls1.5p, Factor Xa (Pharmacia Biotech) was used to cleave
off the GST tag bound
to the glutathione-Sepharose column according to
the manufacturer's
instructions. After elution of the proteins, Factor
Xa was removed
with benzamidine-Sepharose 6B (Pharmacia Biotech).
ScSls1p and
ScSls1.5p were then dialyzed and
frozen as described
above.
Purification of wild-type or mutant hexahistidine-tagged
ScKar2p.
Wild-type ScKar2p, G246D, G247D,
and G274D mutants were purified from BL21 E. coli strain
respectively transformed with pMR2623, pMR2619, pMR2620, and pMR2618
(45). Plasmids encoding His-tagged T59G and T249G mutants
were from T. A. Rapoport's laboratory (50). Purification of the His6-tagged proteins was carried out as
described earlier (45) except that the protease inhibitors
used were 1 mM PMSF, 1 µg of leupeptin per ml, 1 µg of pepstatin A
per ml, and 1 mM benzamidine (in a 500× stock solution).
Purification of GST-tagged Sec63J.
GST-63J (12)
was purified from BL21 on a glutathione-Sepharose 4B column (Pharmacia
Biotech). Cells were grown overnight at 28°C in 2×YT containing 50 µg of ampicillin per ml then diluted in 1 liter of the same medium.
After 2 h, 0.2 mM IPTG was added, and the cells were allowed to
grow for an additional 3 h. Cells were harvested, washed once in
PBS (pH 7.4)-2 mM EDTA plus proteases inhibitors (see above), and kept
at
20°C. The cell pellet was thawed on ice and resuspended in ~20
ml of sonication buffer (PBS, pH 7.4; 2 mM EDTA; 2 mM EDTA; protease
inhibitors). The cells were then treated as described above for
GST-ScSls1p purification, and the cell lysate was applied to
a 2-ml glutathione-Sepharose 4B column equilibrated in sonication
buffer plus 1% Triton X-100. The column was washed as described for
the GST-ScSls1p preparation except the second wash was done
with sonication buffer plus 1 M KCl-0.1% Triton X-100. GST-63J was
eluted with 10 ml of elution buffer (50 mM Tris-Cl, pH 8.0; 10 mM
reduced glutathione; 10% glycerol), and 1-ml fractions were collected.
Then, 5 µl of each fraction was spotted onto a nitrocellulose
membrane and stained with amido black (Sigma). Peak fractions were
pooled, dialyzed against dialysis buffer (20 mM HEPES, pH 6.8; 75 mM
potassium acetate; 250 mM sorbitol; 5 mM magnesium acetate; 10%
glycerol), and frozen in small aliquots at
80°C. SDS-PAGE, followed
by Coomassie brilliant blue staining, showed that GST fusion proteins
were purified to near homogeneity.
GST binding assays.
The GST pulldown assays were performed
essentially as described by Corsi and Schekman (12). A total
of 10 µg of GST-ScSls1p (or GST-ScSls1.5p) or 3 µg of GST-63J or equivalent amounts of GST was incubated with 20 µl
of glutathione-Sepharose 4B (50% slurry) in GST-binding buffer (20 mM
HEPES, pH 6.8; 100 mM KCl; 5 mM MgCl2; 0.1% NP-40; 2%
glycerol; 1 mM dithiothreitol [DTT]; 1 mM EDTA; 1 mM PMSF) and
rotated for 1 h at 4°C in a total volume of 100 µl. Reactions
were centrifuged for 2 min at 15,000 rpm (Sigma 2-MK rotor),
supernatant was removed, and the pellet washed three times with 100 µl of GST-binding buffer. When indicated, 2 µg of
ScKar2p (or dominant lethal mutants), 2 µg of
ScSls1p (or ScSls1.5p), 1 mM nucleotide (ATP or
ADP), and GST-binding buffer were added to the pellet to a final volume
of 100 µl. The reactions were rotated for 2 h at 4°C and
centrifuged for 2 min at 15,000 rpm (Sigma 2-MK rotor). The supernatant
was collected, and the pellet was washed three times with 100 µl of
GST-binding buffer. SDS-PAGE sample buffer was added to the supernatant
and pellet fractions, and they were then analyzed by SDS-PAGE using 8%
polyacrylamide gels, followed by Coomassie brilliant blue staining. Quantification of proteins on stained gels was performed by scanning densitometry with NIH Image 1.61 software.
ATPase assays.
Kar2p (1 µM) was incubated with 200 µM ATP and 0.1 µCi of [
-32P]ATP (3,000 Ci/mmol;
ICN) in ATPase buffer (50 mM HEPES, pH 7.4; 50 mM NaCl; 10 mM DTT;
2 mM MgCl2) for 10 min at room temperature in a total
volume of 20 µl. When indicated, GST-63Jp (2 µM),
ScSls1p (4 µM), ScSls1.5p (4 µM), RCMLA (4 µM; Sigma), and
-lactalbumine (
-Lact; 4 µM; Sigma) were
present. Reactions were stopped on ice, and 1 µl was spotted in
triplicate onto polyethyleneimine cellulose thin-layer chromatography
(TLC) plates (Sigma). Plates were developed in 1 M formic acid and 1 M
lithium chloride (1:1) (64), and conversion of
[
-32P]ATP to [
-32P]ADP was determined
with a PhosphorImager (Molecular Dynamics). For single-turnover
ATPase assays, ScKar2p (5 µM) was incubated with
100 µCi of [
-32P]ATP for 10 min at room temperature.
The [
-32P]ScKar2 complex was purified from
free nucleotide on G-50 microspin columns (Amersham Pharmacia Biotech)
and kept on ice. Assays contained [
-32P]ScKar2 (1 µM), cold ATP (100 µM)
and, when indicated, GST-63Jp (1 µM) and either ScSls1p or
ScSls1.5p (4 µM) in ATPase buffer in a total volume of
100 µl. Reactions were incubated at room temperature, and 20-µl
aliquots were obtained at various times and purified from free
nucleotide on G-50 microspin columns. Then, 3 µl from each reaction
was spotted in triplicate on polyethyleneimine TLC plates (Sigma) and
developed as described above. Plates were analyzed and quantified by
using a PhosphorImager with the ImageQuant software (Molecular Dynamics).
 |
RESULTS |
Identification of a mutation in YlKar2p that restores
interaction with YlSls1.5p in a two-hybrid assay.
We
previously showed that YlSls1p interacts with the ATPase
domain of YlKar2p to promote protein translocation across
the ER membrane in Y. lipolytica (6, 34). A
strain bearing the sls1.5 mutation was affected in the
cotranslational translocation of the reporter protein AEP, and
YlSls1.5p lost its ability to interact with
YlKar2p, as shown by two-hybrid and coimmunoprecipitation assays. To further investigate the relationships between
YlSls1p and YlKar2p, mutations in
YlKar2p were screened for their ability to restore
interaction with YlSls1.5p in a two-hybrid assay.
A pool of randomly mutagenized pACT2-
YlKAR2 plasmid
(
6) was obtained by propagation in the XL1red
E. coli strain (Stratagene)
and introduced into the two-hybrid
PJ69-4A yeast strain (
32)
bearing the plasmid
pAS2


-
Ylsls1.5. A [His
+ Ade
+]
transformant was selected, and the corresponding
pACT2-
Ylkar2*
vector was isolated. The
Ylkar2*
insert was cloned de novo in
pACT2 to confirm the interaction, and
chimeras between the wild-type
and mutant
YlKAR2 strains
were generated to identify the position
of the mutation (data not
shown). The latter was located in the
ATPase domain of
YlKar2p, and sequencing identified a change of
glycine 234 to arginine (Fig.
1A). As shown in Fig.
1A, this mutation
affects a highly conserved residue in the ATPase
domain of Kar2p.
Comparison between the three-dimensional structure of
the ATPase
domain of bovine Hsc70 (
18) and the putative
YlKar2p ATPase
domain three-dimensional structure
modeled by SWISS-MODEL (
24,
56) shows that glycine 234 (glycine 202 in bovine Hsc70) is
located in the central nucleotide
binding cleft, close to the
bound nucleotide (Fig.
1B).
Three-dimensional modeling of the
G234R mutation suggests a position of
the side chain of G234 pointing
into the nucleotide binding cleft (Fig.
1B). One could speculate
that this large side chain may affect ATP
binding and/or hydrolysis.
In agreement with this hypothesis, several
mutations in various
Hsp70 or Hsc70 were already isolated by others
either at the corresponding
glycine or at other residues located into
the ATP binding cleft
(
45,
68). These mutants were shown to
be defective in ATP
binding and ATP-dependent conformational change
(
68) and to
be lethal dominant in
S. cerevisiae
(
45). Therefore, the interaction
of
YlSls1p and
YlKar2p could be ATP and/or conformation dependent.
These
results were used as a working hypothesis for further genetic
and
biochemical experiments in
S. cerevisiae, where a variety
of
well-characterized mutants are available.

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FIG. 1.
Mutation of glycine 234 to arginine can affect ATP
binding and/or hydrolysis. (A) Multiple alignment showing the conserved
position of glycine 234 among Kar2p related proteins; residue numbers
correspond to the YlKar2p, and domains were deduced from
sequence comparison between YlKar2p and bovine Hsc70. (B)
Three-dimensional structure of the ATPase domain of bovine Hsc70
(18) and wild-type and G234R YlKar2p (as
determined by using SWISS-MODEL [24, 56]). Subdomain
colors are as described previously (18). Bound ATP (with
associated magnesium and sodium ions) in bovine Hsc70 are represented;
glycine 202 (bovine Hsc70), glycine 234 (YlKar2p), and
arginine 234 (G234R) are depicted in yellow.
|
|
Disruption of ScSLS1 lead to synthetic lethality in
combination with translocation-deficient kar2 and
sec63 mutants.
We first wanted to check whether
ScSls1p (YOL031cp) is functional in vivo in S. cerevisiae, playing a similar role in protein translocation as in
Y. lipolytica. Disruption of ScSLS1 in various wild-type genetic backgrounds had no detectable effect on the growth
rates nor on any of the physiological processes assessed, i.e.,
translocation and secretion (data not shown). We then examined the
effect of combining the disruption of ScSLS1 with
several well-characterized thermosensitive mutations in the
ScKAR2 and SEC63 genes. Indeed, genetic
interactions, either synthetic lethality or extragenic suppression,
have been successfully used to show the involvement of two genes in the
same biological process (5, 35, 42). The
kar2-113, kar2-159, and kar2-203
mutants were shown to be affected to different extents in protein
translocation (8). We also checked the genetic interactions
between
Scsls1 and the sec63-1 mutant
(51), which bears a point mutation in the luminal J domain
of Sec63p and that is affected in the translocation process
(59). ScSLS1 was disrupted in each of these
mutants, and the growth of the resulting double mutants was assessed at various temperatures. As shown in Fig.
2B, the growth of the kar2-113
Scsls1 and sec63-1
Scsls1 double
mutant strains was greatly reduced at 18 and 30°C, respectively,
compared to the wild type and the single mutants (Fig. 2A). A subtle
synthetic lethal phenotype was detected and demonstrates a
physiological role of Sls1p in S. cerevisiae. To further
characterize the double mutants, we assessed the translocation of
several reporter proteins with well-known processing pathways: CPY,
Gas1p, and pp
F (52). As shown in Fig.
3, when the wild-type or
sls1 strains were cultivated at a permissive temperature
or shifted for 2 h at a semipermissive temperature, no
accumulation of the cytoplasmic form of each reporter protein was
detectable (lanes 1 to 4). When the same experiment was performed with
kar2-113 or sec63-1 single mutants, little or no
cytoplasmic forms of CPY, pp
F, or Gas1p were detectable at a
permissive temperature, but when shifted at 26°C these precursor forms slightly accumulated in the cytosol (lanes 5, 6, 9, and 10; black
arrowheads). In the double mutants lacking ScSLS1, greater amounts of precursors accumulated in the cytosol even when the cells
were cultured at 20°C (compare the black arrowheads in lanes 7 and 8 to lanes 5 and 6 and in lanes 11 and 12 to lanes 9 and 10, respectively). The observed accumulation of the P1 (ER) and P2 (Golgi)
forms of CPY in the sec63-1 and sec63-1
sls1 strains probably results from a lack of a maturating
enzyme, whose translocation is also blocked in these mutants.

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FIG. 2.
Disruption of ScSLS1 lead to synthetic
lethality in a kar2 or sec63-1 context.
ScSLS1 was disrupted in various kar2 or
sec63 contexts. Cells (5 µl) from mid-log-phase cultures
were spotted onto YPD and allowed to grow at the indicated
temperatures.
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FIG. 3.
Disruption of ScSLS1 enhances the
translocation defect of the kar2-113 and sec63-1
mutants. The indicated strains were checked for their ability to
translocate several reporter proteins (pp F, Gas1p, and CPY). Strains
were grown at 20°C to mid-log phase and then shifted to 26°C for
2 h. Equivalent amounts of total extracts were prepared from
samples taken at each stage and then resolved by SDS-PAGE. Proteins
were transferred to nitrocellulose membranes and blotted with
antibodies against the reporter proteins. The different detectable
forms resulting from processing through the secretory pathway are
indicated. Accumulation of the cytoplasmic precursors of each protein
(black arrowhead) is indicative of a translocation defect.
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Interestingly, when
ScSLS1 is disrupted in the
kar2-159 and
kar2-203 mutants, no synthetic
lethal effect was observed (Fig.
2C), nor did accumulation of the
reporter protein cytoplasmic
precursors occur (data not shown). This
allele specificity could
be explained by the fact that neither
Kar2-159p nor Kar2-203p
can bind to ATP-agarose, whereas Kar2-113p
displays normal ATP
binding and hydrolysis rates (
8).
Indeed, if Sls1p's function
is tightly linked to the nucleotide
binding and/or hydrolysis
rates of Kar2p (see below), mutants defective
in one or both of
these two properties would be predicted to be
insensible to the
presence or absence of
Sls1p.
These results show in vivo that
ScSls1p is involved in
protein translocation and that its function is directly linked to Kar2p
and Sec63p, two well-characterized ER components that were shown
to be
required for co- and posttranslational translocation (
8).
Disruption of ScSLS1 leads to synthetic lethality in
ERAD-specific mutants.
ScSLS1 was also disrupted in the
kar2-1 and kar2-133 mutants that are not affected
in the translocation process but that display defects in protein
folding and ERAD (10). As shown in Fig. 2D, the
kar2-1
sls1 and kar2-133
sls1 mutants grew much less than the corresponding single
mutants at a semipermissive temperature (34°C). This result suggested
an involvement of ScSls1p in another essential process in
the ER: protein quality control and degradation. A recent report from
the P. Walter and J. S. Weissman laboratories demonstrated that
disruption of the PER100 gene (identical to ScSLS1) lead to a subtle ERAD defect. In the
per100 mutant, CPY*, a constitutively misfolded soluble
secretory protein rapidly degraded in a wild-type strain, was
stabilized in a similar way to that in ERAD-deficient alleles of
KAR2 (67). To determine whether, in the absence
of ScSls1p, a defect in protein translocation could be
observed in the kar2-1 and kar2-133 mutants,
Western blots were performed on the single and double mutants at 25°C
(permissive temperature) and after a 2-h shift at 34°C
(semipermissive temperature). No cytoplasmic precursor could be
detected (data not shown), confirming that ScKar2p action in
protein translocation and ERAD differs (10).
ScSls1p and ScKar2p interact in a
two-hybrid assay.
Then we checked the ability of
ScSls1p to interact with ScKar2p in a
two-hybrid assay. The sequences encoding ScSls1p and ScKar2p were cloned in pGAD-C2 and pGBD-C2,
respectively (32). The plasmids were then introduced into
the PJ69-4A strain and tested for activation of reporter genes. As
shown in Fig. 4, controls could not grow
on YNB lacking leucine, tryptophan, and adenine plus aminotriazole (5 mM) or on YNB lacking leucine, tryptophan, and adenine alone (sectors 1 and 2), whereas a strain bearing both plasmids (sector 4) could grow on
these media, indicating that, as in Y. lipolytica,
ScSls1p and ScKar2p interact physically. We
then constructed the Scsls1.5 mutant by in vitro mutagenesis (see Materials and Methods), cloned the mutated sequence in pGAD-C2, and checked for reporter gene activation in the presence of pGBD-C2 or
pGBD-C2-ScKAR2. Neither combination allowed growth on YNB
lacking leucine, tryptophan, and adenine plus aminotriazole (5 mM) or on YNB lacking leucine, tryptophan, and adenine alone (sectors 3 and 5 in Fig. 4), indicating that ScSls1.5p, like the related Y. lipolytica mutant, is unable to bind to
ScKar2p in a two-hybrid assay.

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FIG. 4.
ScSls1p and ScKar2p interact in a
two-hybrid assay. PJ69-4A strain was cotransformed with the following
plasmid combinations: 1, pGAD-C2 and pGBD-C2-ScKAR2; 2, pGAD-C2-ScSLS1 and pGBD-C2; 3, pGAD-C2-Scsls1.5
and pGBD-C2; 4, pGAD-C2-ScSLS1 and
pGBD-C2-ScKAR2; and 5, pGAD-C2-Scsls1.5 and
pGBD-C2-ScKAR2. Samples were then plated on minimal medium
lacking leucine and tryptophan (A); minimal medium lacking leucine,
tryptophan, and adenine (B); or minimal medium lacking leucine,
tryptophan, and histidine but with 5 mM 3-aminotriazole (C).
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Dominant lethal mutations in ScKar2p restore
interaction with ScSls1.5p and increase binding to
ScSls1p.
We then wanted to test our hypothesis that
mutants that fail to undergo ATP-dependent conformational change would
be able to restore the interaction with ScSls1.5p in the
two-hybrid assay, as is the case for the YlG234R mutant. The
sequences encoding G246D, G247D, and G274D mutations (45)
were cloned in pGBD-C2 and introduced in PJ69-4A with either pGAD-C2,
pGAD-C2-ScSLS1, or pGAD-C2-Scsls1.5. All fusion
proteins (wild type or mutants) were expressed in equal amounts, as
checked by Western blot analysis (data not shown). We then measured the
-galactosidase activity for each combinations, and the results are
depicted in Fig. 5. As expected, the
-galactosidase activities in a strain coexpressing AD-ScSls1.5p and DBD-ScKar2p were very low and
were similar to those for controls, whereas a strain coexpressing
AD-ScSls1p and DBD-ScKar2p displays higher
-galactosidase activity. When (AD) ScSls1.5p is
coexpressed with any (DBD) ScKar2p mutants, the
-galactosidase activity increased significantly (Fig. 5), indicating
that the ScKar2p mutations indeed can restore interaction
with ScSls1.5p. Interestingly,
-galactosidase activity
increased further (Fig. 5) when ScSls1p was
coexpressed with the ScKar2p lethal dominant mutants,
indicating a better affinity of the mutants for ScSls1p than
of the wild type for ScKar2p. The dominant lethal mutants display very low levels of ATP binding and are blocked in an
ADP-bound-like conformation (45), corresponding to low on
and off rates of peptide binding (50). Sls1p may then
interact with Kar2p-ADP, either bound to its DnaJ partner (i.e.,
Sec63p) (12), to a substrate peptide (62), or to
both.

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FIG. 5.
Dominant lethal mutations in ScKar2p restore
interaction with ScSls1.5p in a two-hybrid assay. PJ69-4A
strain was cotransformed with the indicated combinations of plasmids,
and the -galactosidase activity was assessed as described earlier
(34). Reported values are an average of two measurements on
three independent clones.
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In vitro binding assays.
Since the results obtained with the
two-hybrid approach could be in part due to the nonphysiological
environment in the nucleus or to the non-native conformation of the
hybrid proteins, we decided to confirm these interactions in vitro with
purified tagged proteins. ScSls1p and ScSls1.5p
were fused to GST and then purified to near homogeneity from the BL21
E. coli strain by affinity chromatography as described in
Materials and Methods. His6-tagged versions of ScKar2p (wild type), G246D, G247D, and G274D were purified
to near homogeneity from BL21 according to the method of McClellan et
al. (45). We then examined ScKar2p proteins
binding to GST-ScSls1p in pulldown assays (12).
Purified wild-type and mutant forms of ScKar2p were
incubated at 4°C for 2 h with GST-ScSls1p or
GST-ScSls1.5p complexed with the glutathione matrix in the
presence of 1 mM ATP or 1 mM ADP. As shown in Fig.
6, ScKar2p associates with
GST-ScSls1p in the presence of 1 mM ADP but only
barely in the presence of 1 mM ATP, while binding to
ScSls1.5p is negligible (Table
2). We determined that ScKar2p
does not bind to GST alone as reported previously (12). The
possibility that ScKar2p is recognizing a population of
misfolded GST fusion proteins is unlikely since no binding occurred
with GST-ScSls1.5p, which should contain amounts of
misfolded proteins similar to GST-ScSls1p. These results
confirm the previously reported two-hybrid assays and show that the
interaction between the two proteins is nucleotide dependent. The
dominant lethal mutants associate with ScSls1p in the
presence of either nucleotide (Fig. 6), with all the proteins being
retained in the pellet fraction (Table 2). Interaction with
ScSls1.5p was restored, although fewer proteins were bound
than with GST-ScSls1p (Table 2). These results are in total
agreement with the
-galactosidase activities in the two-hybrid
assays; G246D gives the highest
-galactosidase activity and binds
more efficiently with GST-ScSls1.5p than G247D or G274D,
which display a lower
-galactosidase activity in the two-hybrid
assay (Fig. 5).

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FIG. 6.
GST binding assays. GST-ScSls1p,
GST-ScSls1.5p, ScKar2p, G246D, G247D, and G274D
were purified as described in Materials and Methods.
GST-ScSls1p (or GST-ScSls1.5p) (10 µg) was
prebound to glutathione-Sepharose, and ScKar2p (or dominant
lethal mutants) (2 µg) and either ATP or ADP (1 mM) was added. After
rotation at 4°C for 2 h, proteins associated with the pellet or
remaining in the supernatant were resolved by SDS-PAGE (25% total) and
visualized by Coomassie blue staining. Signals corresponding to
GST-ScSls1p or ScKar2p are indicated.
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TABLE 2.
Quantification of the ScKar2p (wild-type and
mutant) fractions bound to GST-ScSls1p or
GST-ScSls1.5p in pulldown assays expressed as a percentage
of total inputa
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To more precisely understand the nucleotide and conformation dependence
of the interaction between Sls1p and Kar2p, GST binding
experiments
were performed with the T59G and T249G Kar2p mutants
(
44).
T59G is unable to undergo the conformational change following
ATP
binding, remaining in an ADP-bound conformation, whereas T249G
binds
ATP and undergoes the conformational change but fails to
hydrolyze the
bound nucleotide (
68). T59G binds GST-
ScSls1p
in
a way similar to that of the wild type, but significant binding
was observed with GST-
ScSls1.5p in a nucleotide-independent
manner
(Table
2), as is the case for the dominant lethal mutants.
The
T249G mutant binds GST-
ScSls1p in nearly similar
amounts in ATP
or ADP but fails to bind to GST-
ScSls1.5p
(Table
2). This indicates
that ATP hydrolysis per se is not required
for the interaction
of Sls1p and Kar2p, but the conformation of the
chaperone seems
to be critical and may regulate the binding and release
of
ScSls1p.
It was not possible to perform the same in vitro
experiments with
Y. lipolytica proteins due to the high
toxicity of
YlKar2p in
E. coli, thus preventing
its easy purification (personal
observations).
ScSls1p promotes binding of ScKar2p to
Sec63p.
We next tested the effect of ScSls1p on the
binding of Kar2p to Sec63p in GST pulldown assays (12).
Untagged ScSls1p was purified after GST cleavage with Factor
Xa (see Materials and Methods), along with a GST fusion protein
containing the DnaJ domain of Sec63p, GST-63Jp (12).
Increasing amounts of ScSls1p were added to binding
reactions conducted in the presence of 1 mM ATP, since it was
previously shown that Sec63p binding to Kar2p is strictly dependent on
the presence of hydrolyzable ATP (12, 49). As shown in Fig.
7, ScSls1p stimulated
ScKar2p binding to GST-63Jp up to two times, and maximum
stimulation was achieved at a 6:1
(ScSls1p/ScKar2p) molecular ratio. When using
ScSls1.5p in the same reactions, very low stimulation was
achieved (Fig. 7), showing that the observed effect is specific and
depends on a functional interaction between the two proteins.
Interestingly, a significant proportion of ScSls1p was found
in the pellet fraction in our binding assays (Fig. 7); quantitation by
scanning densitometry predicted one to more than two molecules of
ScSls1p bound per ScKar2p. Accounting for these
data, native gel electrophoresis of purified ScSls1p
suggested that this protein can be found as dimers or even as
higher-order oligomers (unpublished results). ScSls1.5p
displayed the same pattern as the wild type on the native gel,
suggesting that the mutation does not cause major structural alterations of the protein. Since we could not observe any interaction between ScSls1p and the J domain of Sec63p by two-hybrid or
in vitro binding assays (data not shown), ScSls1p should be
retained through its interaction with ScKar2p. Indeed, very
small amounts of ScSls1.5p were bound to the pellet fraction
(Fig. 7), supporting the idea that the stimulation of GST-63Jp binding
is tightly linked to a functional interaction with ScKar2p.
This result can be a likely explanation for the stimulatory effect of
Sls1p on protein translocation, more molecules of Kar2p being available
in proximity with the translocon. However, since GST-63Jp is ultimately
bound in the peptide binding pocket in the final Kar2-ADP-GST-63Jp
complex (19, 49), we cannot exclude the possibility that
ScSls1p could stimulate or stabilize the interaction of
ScKar2p with substrate peptides and, more particularly,
translocating peptides (see Discussion). To exclude the possibility
that ScSls1p is recognized as a misfolded peptide in the
final complex, similar binding reactions were conducted in the presence
or absence of either ScSls1p,
-Lact (10 g), or its
permanently misfolded form RCMLA (10 µg). Neither
-Lact nor RCMLA
had any effect on the binding of ScKar2p and GST-63Jp, and neither one altered the stimulatory effect of ScSls1p (data
not shown). Then, the increase of ScKar2p binding to
GST-63Jp in the presence of ScSls1p seems to be specific,
although the observed ternary complex might be only transient in vivo.

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FIG. 7.
ScSls1p stimulates binding of
ScKar2p to GST-63Jp. GST-63Jp (3 µg) was prebound to
glutathione-Sepharose; increasing amounts of untagged
ScSls1p (or ScSls1.5p) were added, along with
ScKar2p (2 µg) and ATP (1 mM). Pulldown assays were done
as in Fig. 6 except that all of the pellet fraction was loaded onto the
gel. The amounts of pellet-associated ScKar2p in the
presence of ScSls1p ( ) or ScSls1.5p ( ) and
the amounts of pellet-associated ScSls1p ( ) or
ScSls1.5p ( ) were quantified as shown in Table 2 (average
of three independent experiments).
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ScSls1p stimulates the GST-63J activation of the
ATPase activity of Kar2p.
To test the effect of
ScSls1p on the nucleotide binding and hydrolysis properties
of ScKar2p, the ATPase activity was monitored under
various conditions. ScKar2p (1 µM) was incubated in the presence of [
-32P]ATP for 10 min at room temperature,
in the presence or absence of GST-63Jp (2 µM) and/or
ScSls1p or ScSls1.5p (4 µM). The conversion of
[
-32P]ATP to [
-32P]ADP was assessed
by TLC as described previously (39), and the results are
depicted in Fig. 8. ScKar2p
alone has a very weak ATPase activity and therefore very small
amounts of ATP were converted to ADP after the 10-min assays (Fig. 8,
lane 1) and after 1 h (data not shown). When GST-63Jp is present,
the ATPase activity of ScKar2p increases and a greater
amount of ADP is detectable (Fig. 8, lane 2). After 1 h of
incubation, nearly all the ATP is hydrolyzed (data not shown). While
ScSls1p alone had no significant effect on the ATPase
activity of ScKar2p (lane 3), the presence of both
ScSls1p and GST-63J significantly increased the ATP
hydrolysis (compare lane 7 to lane 2). ScSls1.5p had no
effect alone (lane 3), but when GST-63Jp was present in the assay more
ADP was detected (lane 8). However, the GST-63Jp mediated activation of
the ATPase activity of ScKar2p was higher with
ScSls1p than with ScSls1.5p (compare lanes 7 and
8, respectively). This suggests that a functional interaction
between ScSls1p and ScKar2p is required for the
stimulation of the ATPase activity by GST-63Jp.
ScSls1.5p probably retained transient interaction ability
with ScKar2p, allowing some ATPase activation.

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FIG. 8.
ScSls1p promotes the ATPase activity of
ScKar2p along with GST-63Jp. ScKar2p (1 µM) was
incubated with cold ATP (200 µM) and [ -32P]ATP (0.1 µCi, 3,000 Ci/mmol). Where indicated, the following proteins were
present in the assay: GST-63Jp (2 µM), ScSls1p (4 µM),
ScSls1.5p (4 µM), -Lact (4 µM), and RCMLA (4 µM).
After 10 min of incubation at room temperature, 1 µl of each reaction
mixture was spotted in triplicate onto polyethyleneimine TLC plates,
and the conversion of [ -32P]ATP (black arrowhead) to
[ -32P]ADP (white arrowhead) was analyzed by using a
PhosphorImager (Molecular Dynamics).
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In order to ensure that the observed effect was specific to
ScSls1p, the same experiments were carried out with

-Lact
and
RCMLA. In our experimental conditions, neither

-Lact nor RCMLA
significantly stimulated the ATPase activity of
ScKar2p,
either
alone (lanes 5 and 6) or with GST-63Jp (lanes 9 and 10),
ScSls1p
(lanes 11 and 12), or
ScSls1.5p (lanes 13 and 14). We also checked
that any of the proteins used in these assays
(except
ScKar2p)
had an intrinsic ATPase activity (data
not shown). Therefore,
ScSls1p and GST-63Jp conjointly
activate the ATPase activity of
ScKar2p, thereby
enhancing the turnover of the molecular
chaperone.
Influence of ScSls1p on the nucleotide binding
properties of ScKar2p.
We have showed that the
ATPase activity of ScKar2p is greatly induced by
ScSls1p, but only when GST-63Jp was also present in the
assay. A likely explanation would be that ScSls1p functions as a GrpE like protein and promotes nucleotide exchange. We then analyzed the effect of ScSls1p on the nucleotide binding and
hydrolysis of ScKar2p in single-turnover ATPase assays.
ScKar2p was preincubated for 10 min with
[
-32P]ATP and rapidly purified from free nucleotide by
gel filtration. The [
-32P]ScKar2p complex (1 µM) was
then incubated at room temperature with cold ATP either alone or with
GST-63Jp (1 µM), ScSls1p (4 µM), or both. At various
times, aliquots were obtained and further purified from free nucleotide
by rapid gel filtration. Bound nucleotide was determined by TLC, and
the results are depicted in Fig. 9A. As
expected, ScKar2p alone was mainly in the ATP-bound form, a result consistent with its weak ATPase activity (Fig. 9A, lanes K).
When GST-63Jp was present in the assay, almost all of the bound ATP was
converted to ADP within 1 min, a finding consistent with previous
observations (Fig. 9A, lanes KJ). Interestingly, when
ScSls1p was added, much less bound ATP was detected (Fig. 9A, lanes KS), suggesting either that it has been hydrolyzed or that it
has been exchanged for cold ATP. Quantification by PhosphorImager analysis confirmed these observations and showed that, in the presence
of ScSls1p, the amounts of bound ATP (Fig. 9B) and ADP (Fig.
9C) significantly decreased compared to the wild type. When both
GST-63Jp and ScSls1p were added to the
[
-32P]ScKar2p complex, no significant difference could
be observed compared to GST-63Jp and [
-32P]ScKar2p
alone (Fig. 9A, lanes KJS [Fig. 9B and C for quantification]). This
is probably due to a very fast activation of the ATPase activity of
ScKar2p by GST-63Jp in these conditions, with the ADP being rapidly released after hydrolysis. Taken together, these results show
that the nucleotide binding properties of ScKar2p are
influenced by ScSls1p.

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FIG. 9.
Single-turnover ATPase assays. (A) A
[ -32P]ScKar2 complex was formed after
incubation of ScKar2p with 100 µCi of
[ -32P]ATP for 10 min at room temperature and removal
of free nucleotide by rapid gel filtration on microspin G-50 columns.
[ -32P]ScKar2 (1 µM) was further incubated
with or without GST-63Jp (1 µM) and/or ScSls1p (4 µM) in
the presence of cold ATP (100 µM). Aliquots were obtained at 1, 2, 5, and 10 min and then separated from free nucleotide by gel filtration on
microspin G-50 columns. Then, 3 µl from each reaction was spotted in
triplicate onto polyethyleneimine TLC plates, and the conversion of
[ -32P]ATP (black arrowhead) to
[ -32P]ADP (white arrowhead) was analyzed using a
PhosphorImager (Molecular Dynamics). K, J, and S represent
ScKar2p, GST-63Jp, and ScSls1p, respectively.
Quantification of ATP (B) and ADP (C) was performed with the ImageQuant
software, and results were averaged from three independent experiments.
Values were plotted as a function of time (K, diamonds; KS, triangles;
KJ, squares; KJS, circles).
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DISCUSSION |
Our experiments describe the involvement of the SLS1
gene, previously characterized in the yeast Y. lipolytica,
in the protein translocation process in S. cerevisiae.
Disruption of the ScSLS1 gene in the model yeast had no
detectable effect on viability, in contrast to the Y. lipolytica
Ylsls1 mutant that is strongly impaired
in growth at high temperature and in translocation of the reporter
protein AEP (5). However, a synthetic lethal effect was
observed when ScSLS1 was disrupted in the
kar2-113 and sec63-1 mutants (Fig. 2), with
enhanced defects in translocation of several reporter proteins (Fig.
3), indicating an involvement of ScSls1p in the
translocation process. Disruption of ScSLS1 in a
kar2-159 or a kar2-203 context did not result in
a synthetic lethal phenotype (Fig. 2). Kar2-159p and Kar2-203p do not
bind to ATP-agarose (8) but can still bind to
ScSls1p (unpublished results), suggesting that this
interaction is not functional; therefore, whether ScSls1p is
present or not does not enhance the growth defect of the original mutant. A synthetic lethal phenotype was also observed with the kar2-1 and kar2-133 mutants (Fig. 2) that
displayed defects in folding and ERAD, whereas protein translocation
was not affected (10). This suggests that ScSls1p
function is not restricted to the protein translocation process. Sls1p
is more probably a partner of Kar2p in many if not all of the functions
that the chaperone fulfills in the ER. Efforts to find other partners
for YlSls1p by two-hybrid experiments were unsuccessful
(34). In support to our findings, Travers et al.
(67) have recently reported the identification of Per100p,
which is identical to ScSls1p, in a wide range screen for
unfolded protein response (UPR) target genes. They showed that Per100p
is upregulated by the UPR, which is consistent with the observed
increase of YlSls1p levels in cells that were treated with
tunicamycin or heat shocked (unpublished results). Furthermore, these
authors demonstrated a direct involvement of ScSls1p and Per100p in
ERAD, since a constitutively misfolded form of CPY was stabilized in
the per100 mutant in a way similar to that in ERAD-affected
kar2 mutants.
A direct interaction between the ScKar2p and
ScSls1p was shown by two-hybrid (Fig. 4) and in vitro
binding assays (Fig. 6). The G234R mutant was isolated based on its
ability to restore interaction with the YlSls1.5p mutant
(6). Three-dimensional modeling predicted an inhibitory
effect of this mutation on ATP binding (Fig. 1). Similar mutants were
obtained in hamster BiP (68) and ScKar2p
(45) and were shown to affect ATP binding and the
conformational change following ATP hydrolysis. These mutants were
shown to be blocked in an ADP-bound-like conformation that mediates
stable interaction with substrate peptides. An attractive hypothesis
was that Sls1p binding to Kar2p is ATP and/or conformation dependent
and that the G234R is blocked in the preferential conformation for
interaction with Sls1p. This hypothesis was supported by two-hybrid assays with three dominant lethal ScKar2p mutants (G246D,
G247D, and G274D) (45). These mutants restored the
interaction with ScSls1.5p and displayed higher
-galactosidase activity when assayed with ScSls1p than
did wild-type ScKar2p (Fig. 5). The two-hybrid data were
validated by in vitro binding assays (Fig. 6) and, taken together,
confirmed that the conformation of Kar2p strongly affects binding to
Sls1p, with preferential binding occurring when Kar2p is in the
ADP-bound conformation (i.e., with the peptide-binding pocket occupied
and closed by the C terminus lid [69]). Assays with
T59G and T249G, two ScKar2p mutants affected in the
conformational change following ATP binding, and in ATP hydrolysis,
respectively (68) (Table 2), suggested that ATP hydrolysis
is not necessary for the Sls1p binding but rather that the
conformational change induced by ATP hydrolysis could regulate binding
and release of Sls1p.
ScKar2p interacts with the lumenal J domain of Sec63p, and
this interaction allows activation of Kar2p for peptide binding (8, 9, 12, 49). Pulldown experiments with purified GST-63Jp and ScKar2p confirmed the previously described (12,
45) ATP-dependent interaction between the chaperone and its DnaJ
partner. The same reactions were conducted in the presence of
increasing amounts of purified ScSls1p in the presence of
ATP. A dose-dependent stimulation of ScKar2p binding to
GST-63Jp was observed (Fig. 7), and a significant amount of
ScSls1p remained bound to the glutathione pellet. Since ScSls1p does not interact with GST-63Jp (data not shown),
the ScSls1p must remain bound to ScKar2p. This is
not surprising since ScKar2p is in the ADP-bound
conformation (i.e., the preferential conformation for binding with
ScSls1p) in the final complex with GST-63Jp (12,
49). The observed stimulation of ScKar2p binding to
GST-63Jp by ScSls1p could be the result of a stabilization of the [ScKar2p-ADP]-GST-63Jp complex by
ScSls1p. It was shown that the interaction between Sec63p
and ScKar2p depends on the presence of both the ATPase
domain and the peptide-binding pocket (50) and that
GST-63Jp, in the absence of another peptide, is ultimately bound to
ScKar2p as a substrate peptide (19, 49). ScKar2p binds transiently with the J domain of Sec63p and is
then rapidly transferred to a peptide substrate (either a translocating peptide or the J domain itself) (49). Based on our binding
experiments, different hypotheses can be proposed. In one,
ScSls1p could stabilize the transient interaction between
ScKar2p and GST-63Jp to enhance the number of available
activated ScKar2p's at the translocon. This interaction can
prevent the transfer of GST-63Jp to the peptide-binding pocket in the
absence of substrate peptide. A second hypothesis is that
ScSls1p stabilizes the interaction of ScKar2p and
GST-63Jp in a Hip-like manner (31). GST-63Jp would be
recognized as a substrate peptide (bound to the peptide binding pocket
of ScKar2p), and this enhanced association could promote the
ratcheting function of ScKar2p.
Another attractive possibility is that ScSls1p acts as a
nucleotide exchanger in a BAG1 manner (30). More
ScKar2p-ATP complexes will then be available for binding
with Sec63p, allowing a faster recycling of ScKar2p at the
translocon. In support of this hypothesis, we showed that
ScSls1p promotes the ATPase activity of
ScKar2p when GST-63Jp is present (Fig. 8). This stimulatory
effect was specific since neither
-Lact nor RCMLA had the same
effect. Moreover, single-turnover assays showed that ScSls1p
affects nucleotide binding to ScKar2p, since the
-32P-labeled nucleotide bound to ScKar2p
seemed to be rapidly exchanged for a "cold" nucleotide (Fig. 9).
This hypothesis does not exclude the possibility that
ScSls1p will then stabilize the Sec63p-activated ScKar2p complex.
In summary, our results demonstrate the involvement of a newly
identified ER protein in the translocation process by its direct effect
on the function of an Hsp70 family member. This protein was not
identified in previous studies, probably because of its nonessential
function in S. cerevisiae. This highlights the importance of
studies carried on non-model organisms such as Y. lipolytica. Sls1p homologues were identified in human and mouse
EST libraries and in the recently sequenced Drosophila
melanogaster genome, showing that the role of Sls1p in higher
eukaryotes and, more particularly, in humans could be more critical
than it is in S. cerevisiae or even Y. lipolytica. Moreover, such proteins, which are nonessential in
reconstituted in vitro systems, could be required for fine
physiological regulation of complex mechanisms such as protein
secretion, folding, or degradation, and defects in these proteins could
be involved in several diseases. We still have to define in more detail
the role of Sls1p in ERAD and/or folding with the genetic
identification and analysis of specific mutants. Biochemical
experiments are in progress to identify the precise role of Sls1p and
to analyze more accurately its molecular relationships with Kar2p and
Sec63p (or another DnaJ partner, such as Scj1p [3, 65]
or Jem1p [53]).
Moreover, previous findings in Y. lipolytica (5)
showed that overexpression of YlSls1p retained secretory
proteins in the ER, delaying their transit through the secretory
pathway. Similar effects were observed when hamster BiP was
overexpressed in mammalian cells (15). Whether this effect
is due to a chaperone-like function of Sls1p itself or relies on its
association with Kar2p will have to be studied. This work supports
previous findings that various classes of cofactors act to modulate the
Hsp70s activity and to ensure their functional specificity.
 |
ACKNOWLEDGMENTS |
We thank Jeffrey L. Brodsky and Amie J. McClellan for strains,
plasmids, and helpful discussion; Rosine Haguenauer-Tsapis for the gift
of
-factor, CPY, and Gas1p antibodies and for helpful discussion;
Tom A. Rapoport and Ian Collinson for T59G and T249G mutants; and David
M. Ogrydziak and Anita Boisramé for critical reading of the manuscript.
This work was supported by a EEC BIOT4-CT96003 fellowship (M.K.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Laboratoire de
Génétique et Cellulaire, INRA-INA.PG-CNRS, BP 01, 78850 Thiverval-Grignon, France. Phone: 33-1-30-81-54-52. Fax:
33-1-30-81-54-57. E-mail: Claude.Gallardin{at}.grignon.inra.fr.
 |
REFERENCES |
| 1.
|
Ausebel, F.,
R. Brent,
R. Kingston,
D. Moore,
J. G. Seidman, et al.
1989.
Current protocols in molecular biology.
Wiley Interscience, New York, N.Y.
|
| 2.
|
Beckmann, R.,
D. Bubeck,
R. Grassucci,
P. Penczek,
A. Verschoor,
G. Blobel, and J. Frank.
1997.
Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex.
Science
278:2123-2126[Abstract/Free Full Text].
|
| 3.
|
Blumberg, H., and P. A. Silver.
1991.
A homologue of the bacterial heat-shock gene DnaJ that alters protein sorting in yeast.
Nature
349:627-630[CrossRef][Medline].
|
| 4.
|
Boisrame, A.,
J. M. Beckerich, and C. Gaillardin.
1999.
A mutation in the secretion pathway of the yeast Yarrowia lipolytica that displays synthetic lethality in combination with a mutation affecting the signal recognition particle.
Mol. Gen. Genet.
261:601-609[CrossRef][Medline].
|
| 5.
|
Boisrame, A.,
J. M. Beckerich, and C. Gaillardin.
1996.
Sls1p, an endoplasmic reticulum component, is involved in the protein translocation process in the yeast Yarrowia lipolytica.
J. Biol. Chem.
271:11668-11675[Abstract/Free Full Text].
|
| 6.
|
Boisrame, A.,
M. Kabani,
J. M. Beckerich,
E. Hartmann, and C. Gaillardin.
1998.
Interaction of Kar2p and Sls1p is required for efficient co-translational translocation of secreted proteins in the yeast Yarrowia lipolytica.
J. Biol. Chem.
273:30903-30908[Abstract/Free Full Text].
|
| 7.
|
Brennwald, P.,
X. Liao,
K. Holm,
G. Porter, and J. A. Wise.
1988.
Identification of an essential Schizosaccharomyces pombe RNA homologous to the 7SL component of signal recognition particle.
Mol. Cell. Biol.
8:1580-1590[Abstract/Free Full Text].
|
| 8.
|
Brodsky, J. L.,
J. Goeckeler, and R. Schekman.
1995.
BiP and Sec63p are required for both co- and posttranslational protein translocation into the yeast endoplasmic reticulum.
Proc. Natl. Acad. Sci. USA
92:9643-9646[Abstract/Free Full Text].
|
| 9.
|
Brodsky, J. L., and R. Schekman.
1993.
A Sec63p-BiP complex from yeast is required for protein translocation in a reconstituted proteoliposome.
J. Cell Biol.
123:1355-1363[Abstract/Free Full Text].
|
| 10.
|
Brodsky, J. L.,
E. D. Werner,
M. E. Dubas,
J. L. Goeckeler,
K. B. Kruse, and A. A. McCracken.
1999.
The requirement for molecular chaperones during endoplasmic reticulum-associated protein degradation demonstrates that protein export and import are mechanistically distinct.
J. Biol. Chem.
274:3453-3460[Abstract/Free Full Text].
|
| 11.
|
Chappell, T. G.,
B. B. Konforti,
S. L. Schmid, and J. E. Rothman.
1987.
The ATPase core of a clathrin uncoating protein.
J. Biol. Chem.
262:746-751[Abstract/Free Full Text].
|
| 12.
|
Corsi, A. K., and R. Schekman.
1997.
The lumenal domain of Sec63p stimulates the ATPase activity of BiP and mediates BiP recruitment to the translocon in Saccharomyces cerevisiae.
J. Cell Biol.
137:1483-1493[Abstract/Free Full Text].
|
| 13.
|
Corsi, A. K., and R. Schekman.
1996.
Mechanism of polypeptide translocation into the endoplasmic reticulum.
J. Biol. Chem.
271:30299-30302[Free Full Text].
|
| 14.
|
Deshaies, R. J.,
B. D. Koch,
M. Werner-Washburne,
E. A. Craig, and R. Schekman.
1988.
A subfamily of stress proteins facilitates translocation of secretory and mitochondrial precursor polypeptides.
Nature
332:800-805[CrossRef][Medline].
|
| 15.
|
Dorner, A. J.,
L. C. Wasley, and R. J. Kaufman.
1992.
Overexpression of GRP78 mitigates stress induction of glucose regulated proteins and blocks secretion of selective proteins in Chinese hamster ovary cells.
EMBO J.
11:1563-1571[Medline].
|
| 16.
|
Dunnwald, M.,
A. Varshavsky, and N. Johnsson.
1999.
Detection of transient in vivo interactions between substrate and transporter during protein translocation into the endoplasmic reticulum.
Mol. Biol. Cell
10:329-344[Abstract/Free Full Text].
|
| 17.
|
Feldheim, D.,
J. Rothblatt, and R. Schekman.
1992.
Topology and functional domains of Sec63p, an endoplasmic reticulum membrane protein required for secretory protein translocation.
Mol. Cell. Biol.
12:3288-3296[Abstract/Free Full Text].
|
| 18.
|
Flaherty, K. M.,
C. DeLuca-Flaherty, and D. B. McKay.
1990.
Three-dimensional structure of the ATPase fragment of a 70K heat-shock cognate protein.
Nature
346:623-628[CrossRef][Medline].
|
| 19.
|
Gassler, C. S.,
A. Buchberger,
T. Laufen,
M. P. Mayer,
H. Schroder,
A. Valencia, and B. Bukau.
1998.
Mutations in the DnaK chaperone affecting interaction with the DnaJ cochaperone.
Proc. Natl. Acad. Sci. USA
95:15229-15234[Abstract/Free Full Text].
|
| 20.
|
Gething, M. J.
1999.
Role and regulation of the ER chaperone BiP.
Semin. Cell. Dev. Biol.
10:465-472[CrossRef][Medline].
|
| 21.
|
Gilmore, R.,
G. Blobel, and P. Walter.
1982.
Protein translocation across the endoplasmic reticulum. I. Detection in the microsomal membrane of a receptor for the signal recognition particle.
J. Cell Biol.
95:463-469[Abstract/Free Full Text].
|
| 22.
|
Gilmore, R.,
P. Walter, and G. Blobel.
1982.
Protein translocation across the endoplasmic reticulum. II. Isolation and characterization of the signal recognition particle receptor.
J. Cell Biol.
95:470-477[Abstract/Free Full Text].
|
| 23.
|
Gorlich, D., and T. A. Rapoport.
1993.
Protein translocation into proteoliposomes reconstituted from purified components of the endoplasmic reticulum membrane.
Cell
75:615-630[CrossRef][Medline].
|
| 24.
|
Guex, N., and M. C. Peitsch.
1997.
SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling.
Electrophoresis
18:2714-2723[CrossRef][Medline].
|
| 25.
|
Hamman, B. D.,
L. M. Hendershot, and A. E. Johnson.
1998.
BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation.
Cell
92:747-758[CrossRef][Medline].
|
| 26.
|
Hanein, D.,
K. E. Matlack,
B. Jungnickel,
K. Plath,
K. U. Kalies,
K. R. Miller,
T. A. Rapoport, and C. W. Akey.
1996.
Oligomeric rings of the Sec61p complex induced by ligands required for protein translocation.
Cell
87:721-732[CrossRef][Medline].
|
| 27.
|
Hann, B. C., and P. Walter.
1991.
The signal recognition particle in S. cerevisiae.
Cell
67:131-144[CrossRef][Medline].
|
| 28.
|
He, F.,
D. Yaver,
J. M. Beckerich,
D. Ogrydziak, and C. Gaillardin.
1990.
The yeast Yarrowia lipolytica has two, functional, signal recognition particle 7S RNA genes.
Curr. Genet.
17:289-292[CrossRef][Medline].
|
| 29.
|
High, S.
1995.
Protein translocation at the membrane of the endoplasmic reticulum.
Prog. Biophys. Mol. Biol.
63:233-250[CrossRef][Medline].
|
| 30.
|
Hohfeld, J., and S. Jentsch.
1997.
GrpE-like regulation of the hsc70 chaperone by the anti-apoptotic protein BAG-1.
EMBO J.
16:6209-6216[CrossRef][Medline]. (Erratum, 17:847, 1998.)
|
| 31.
|
Hohfeld, J.,
Y. Minami, and F. U. Hartl.
1995.
Hip, a novel cochaperone involved in the eukaryotic Hsc70/Hsp40 reaction cycle.
Cell
83:589-598[CrossRef][Medline].
|
| 32.
|
James, P.,
J. Halladay, and E. A. Craig.
1996.
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast.
Genetics
144:1425-1436[Abstract].
|
| 33.
|
Johnson, A. E., and M. A. van Waes.
1999.
The translocon: a dynamic gateway at the ER membrane.
Annu. Rev. Cell. Dev. Biol.
15:799-842[CrossRef][Medline].
|
| 34.
|
Kabani, M.,
A. Boisrame,
J. M. Beckerich, and C. Gaillardin.
2000.
A highly representative two-hybrid genomic library for the yeast Yarrowia lipolytica.
Gene
241:309-315[CrossRef][Medline].
|
| 35.
|
Kaiser, C. A., and R. Schekman.
1990.
Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway.
Cell
61:723-733[CrossRef][Medline].
|
| 36.
|
Kippert, F.
1995.
A rapid permeabilization procedure for accurate quantitative determination of beta-galactosidase activity in yeast cells.
FEMS Microbiol. Lett.
128:201-206[Medline].
|
| 37.
|
Kunkel, T. A.,
J. D. Roberts, and R. A. Zakour.
1987.
Rapid and efficient site-specific mutagenesis without phenotypic selection.
Methods Enzymol.
154:367-382[Medline].
|
| 38.
|
Lee, I. H., and D. M. Ogrydziak.
1997.
Yarrowia lipolytica SRP54 homolog and translocation of Kar2p.
Yeast
13:499-513[CrossRef][Medline].
|
| 39.
|
Liberek, K.,
J. Marszalek,
D. Ang,
C. Georgopoulos, and M. Zylicz.
1991.
Escherichia coli DnaJ and GrpE heat shock proteins jointly stimulate ATPase activity of DnaK.
Proc. Natl. Acad. Sci. USA
88:2874-2878[Abstract/Free Full Text].
|
| 40.
|
Lyman, S. K., and R. Schekman.
1997.
Binding of secretory precursor polypeptides to a translocon subcomplex is regulated by BiP.
Cell
88:85-96[CrossRef][Medline].
|
| 41.
|
Lyman, S. K., and R. Schekman.
1995.
Interaction between BiP and Sec63p is required for the completion of protein translocation into the ER of Saccharomyces cerevisiae.
J. Cell Biol.
131:1163-1171[Abstract/Free Full Text].
|
| 42.
|
Mamoun, C. B.,
J. M. Beckerich, and C. Gaillardin.
1996.
The TSR1 gene of Yarrowia lipolytica is involved in the signal recognition particle-dependent translocation pathway of secretory proteins.
J. Biol. Chem.
271:23895-23901[Abstract/Free Full Text].
|
| 43.
|
Matlack, K. E.,
B. Misselwitz,
K. Plath, and T. A. Rapoport.
1999.
BiP acts as a molecular ratchet during posttranslational transport of prepro-alpha factor across the ER membrane.
Cell
97:553-564[CrossRef][Medline].
|
| 44.
|
Matlack, K. E.,
K. Plath,
B. Misselwitz, and T. A. Rapoport.
1997.
Protein transport by purified yeast Sec complex and Kar2p without membranes.
Science
277:938-941[Abstract/Free Full Text]. (Erratum, 277:1749.)
|
| 45.
|
McClellan, A. J.,
J. B. Endres,
J. P. Vogel,
D. Palazzi,
M. D. Rose, and J. L. Brodsky.
1998.
Specific molecular chaperone interactions and an ATP-dependent conformational change are required during posttranslational protein translocation into the yeast ER.
Mol. Biol. Cell
9:3533-3545[Abstract/Free Full Text].
|
| 46.
|
Miao, B.,
J. E. Davis, and E. A. Craig.
1997.
Mge1 functions as a nucleotide release factor for Ssc1, a mitochondrial Hsp70 of Saccharomyces cerevisiae.
J. Mol. Biol.
265:541-552[CrossRef][Medline].
|
| 47.
|
Milarski, K. L., and R. I. Morimoto.
1989.
Mutational analysis of the human HSP70 protein: distinct domains for nucleolar localization and adenosine triphosphate binding.
J. Cell Biol.
109:1947-1962[Abstract/Free Full Text].
|
| 48.
|
Minet, M.,
M. E. Dufour, and F. Lacroute.
1992.
Complementation of Saccharomyces cerevisiae auxotrophic mutants by Arabidopsis thaliana cDNAs.
Plant J.
2:417-422[Medline].
|
| 49.
|
Misselwitz, B.,
O. Staeck,
K. E. Matlack, and T. A. Rapoport.
1999.
Interaction of BiP with the J-domain of the Sec63p component of the endoplasmic reticulum protein translocation complex.
J. Biol. Chem.
274:20110-20115[Abstract/Free Full Text].
|
| 50.
|
Misselwitz, B.,
O. Staeck, and T. A. Rapoport.
1998.
J proteins catalytically activate Hsp70 molecules to trap a wide range of peptide sequences.
Mol. Cell
2:593-603[CrossRef][Medline].
|
| 51.
|
Nelson, M. K.,
T. Kurihara, and P. A. Silver.
1993.
Extragenic suppressors of mutations in the cytoplasmic C terminus of SEC63 define five genes in Saccharomyces cerevisiae.
Genetics
134:159-173[Abstract].
|
| 52.
|
Ng, D. T., and P. Walter.
1996.
ER membrane protein complex required for nuclear fusion.
J. Cell Biol.
132:499-509[Abstract/Free Full Text].
|
| 53.
|
Nishikawa, S., and T. Endo.
1997.
The yeast JEM1p is a DnaJ-like protein of the endoplasmic reticulum membrane required for nuclear fusion.
J. Biol. Chem.
272:12889-12892[Abstract/Free Full Text].
|
| 54.
|
Palleros, D. R.,
K. L. Reid,
L. Shi,
W. J. Welch, and A. L. Fink.
1993.
ATP-induced protein-Hsp70 complex dissociation requires K+ but not ATP hydrolysis.
Nature
365:664-666[CrossRef][Medline].
|
| 55.
|
Panzner, S.,
L. Dreier,
E. Hartmann,
S. Kostka, and T. A. Rapoport.
1995.
Posttranslational protein transport in yeast reconstituted with a purified complex of Sec proteins and Kar2p.
Cell
81:561-570[CrossRef][Medline].
|
| 56.
|
Peitsch, M. C.
1996.
ProMod and Swiss-Model: internet-based tools for automated comparative protein modelling.
Biochem. Soc. Trans.
24:274-279[Medline].
|
| 57.
|
Rapoport, T. A.,
K. E. Matlack,
K. Plath,
B. Misselwitz, and O. Staeck.
1999.
Posttranslational protein translocation across the membrane of the endoplasmic reticulum.
Biol. Chem.
380:1143-1150[CrossRef][Medline].
|
| 58.
|
Rapoport, T. A.,
M. M. Rolls, and B. Jungnickel.
1996.
Approaching the mechanism of protein transport across the ER membrane.
Curr. Opin. Cell Biol.
8:499-504[CrossRef][Medline].
|
| 59.
|
Rothblatt, J. A.,
R. J. Deshaies,
S. L. Sanders,
G. Daum, and R. Schekman.
1989.
Multiple genes are required for proper insertion of secretory proteins into the endoplasmic reticulum in yeast.
J. Cell Biol.
109:2641-2652[Abstract/Free Full Text].
|
| 60.
|
Sadler, I.,
A. Chiang,
T. Kurihara,
J. Rothblatt,
J. Way, and P. Silver.
1989.
A yeast gene important for protein assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an Escherichia coli heat shock protein.
J. Cell Biol.
109:2665-2675[Abstract/Free Full Text].
|
| 61.
|
Sanchez, M.,
J. M. Beckerich,
C. Gaillardin, and A. Dominguez.
1997.
Isolation and cloning of the Yarrowia lipolytica SEC65 gene, a component of the yeast signal recognition particle displaying homology with the human SRP19 gene.
Gene
203:75-84[CrossRef][Medline].
|
| 62.
|
Schmid, D.,
A. Baici,
H. Gehring, and P. Christen.
1994.
Kinetics of molecular chaperone action.
Science
263:971-973[Abstract/Free Full Text].
|
| 63.
|
Scidmore, M. A.,
H. H. Okamura, and M. D. Rose.
1993.
Genetic interactions between KAR2 and SEC63, encoding eukaryotic homologues of DnaK and DnaJ in the endoplasmic reticulum.
Mol. Biol. Cell
4:1145-1159[Abstract].
|
| 64.
|
Shlomai, J., and A. Kornberg.
1980.
A prepriming DNA replication enzyme of Escherichia coli. I. Purification of protein n': a sequence-specific, DNA-dependent ATPase.
J. Biol. Chem.
255:6789-6793[Abstract/Free Full Text].
|
| 65.
|
Silberstein, S.,
G. Schlenstedt,
P. A. Silver, and R. Gilmore.
1998.
A role for the DnaJ homologue Scj1p in protein folding in the yeast endoplasmic reticulum.
J. Cell Biol.
143:921-933[Abstract/Free Full Text].
|
| 66.
|
Simon, S. M., and G. Blobel.
1991.
A protein-conducting channel in the endoplasmic reticulum.
Cell
65:371-380[CrossRef][Medline].
|
| 67.
|
Travers, K. J.,
C. K. Patil,
L. Wodicka,
D. J. Lockhart,
J. S. Weissman, and P. Walter.
2000.
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.
Cell
101:249-258[CrossRef][Medline].
|
| 68.
|
Wei, J.,
J. R. Gaut, and L. M. Hendershot.
1995.
In vitro dissociation of BiP-peptide complexes requires a conformational change in BiP after ATP binding but does not require ATP hydrolysis.
J. Biol. Chem.
270:26677-26682[Abstract/Free Full Text].
|
| 69.
|
Zhu, X.,
X. Zhao,
W. F. Burkholder,
A. Gragerov,
C. M. Ogata,
M. E. Gottesman, and W. A. Hendrickson.
1996.
Structural analysis of substrate binding by the molecular chaperone DnaK.
Science
272:1606-1614[Abstract].
|
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[Full Text]
-
Borkovich, K. A., Alex, L. A., Yarden, O., Freitag, M., Turner, G. E., Read, N. D., Seiler, S., Bell-Pedersen, D., Paietta, J., Plesofsky, N., Plamann, M., Goodrich-Tanrikulu, M., Schulte, U., Mannhaupt, G., Nargang, F. E., Radford, A., Selitrennikoff, C., Galagan, J. E., Dunlap, J. C., Loros, J. J., Catcheside, D., Inoue, H., Aramayo, R., Polymenis, M., Selker, E. U., Sachs, M. S., Marzluf, G. A., Paulsen, I., Davis, R., Ebbole, D. J., Zelter, A., Kalkman, E. R., O'Rourke, R., Bowring, F., Yeadon, J., Ishii, C., Suzuki, K., Sakai, W., Pratt, R.
(2004). Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism. Microbiol. Mol. Biol. Rev.
68: 1-108
[Abstract]
[Full Text]
-
Steel, G. J., Fullerton, D. M., Tyson, J. R., Stirling, C. J.
(2004). Coordinated Activation of Hsp70 Chaperones. Science
303: 98-101
[Abstract]
[Full Text]
-
Kabani, M., Kelley, S. S., Morrow, M. W., Montgomery, D. L., Sivendran, R., Rose, M. D., Gierasch, L. M., Brodsky, J. L.
(2003). Dependence of Endoplasmic Reticulum-associated Degradation on the Peptide Binding Domain and Concentration of BiP. Mol. Biol. Cell
14: 3437-3448
[Abstract]
[Full Text]
-
Boisrame, A., Chasles, M., Babour, A., Beckerich, J.-M., Gaillardin, C.
(2003). Sbh1p, a subunit of the Sec61 translocon, interacts with the chaperone calnexin in the yeast Yarrowia lipolytica. J. Cell Sci.
115: 4947-4956
[Abstract]
[Full Text]
-
Chung, K. T., Shen, Y., Hendershot, L. M.
(2002). BAP, a Mammalian BiP-associated Protein, Is a Nucleotide Exchange Factor That Regulates the ATPase Activity of BiP. J. Biol. Chem.
277: 47557-47563
[Abstract]
[Full Text]
-
Kabani, M., Beckerich, J.-M., Brodsky, J. L.
(2002). Nucleotide Exchange Factor for the Yeast Hsp70 Molecular Chaperone Ssa1p. Mol. Cell. Biol.
22: 4677-4689
[Abstract]
[Full Text]