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Molecular and Cellular Biology, October 2000, p. 7583-7590, Vol. 20, No. 20
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Functional Conservation of Regulatory Elements in the
pdx-1 Gene: PDX-1 and Hepatocyte Nuclear Factor 3
Transcription Factors Mediate
-Cell-Specific Expression
Sonya
Marshak,
Etty
Benshushan,
Michal
Shoshkes,
Leora
Havin,
Erol
Cerasi, and
Danielle
Melloul*
Department of Endocrinology & Metabolism,
Hadassah University Hospital, 91120 Jerusalem, Israel
Received 2 February 2000/Returned for modification 15 March
2000/Accepted 21 July 2000
 |
ABSTRACT |
The PDX-1 transcription factor plays a key role in pancreatic
development and in the regulation of the insulin gene in the adult
cell. As its functions appear to be similar in humans and mice, we
analyzed the functional conservation of homologous sequences important
for the maintenance and the cell-specific regulation of the
pdx-1 gene. Apart from the proximal promoter region, three
highly homologous (PH1 to PH3) sequences were apparent in the human and
mouse 5' flanking regions of the gene. By transient transfections in
and non-
cells, we show that mainly PH1 and PH2 preferentially
confer
-cell-specific activation on a heterologous promoter. DNase I
footprinting and binding analyses revealed that both bind to and are
transactivated by hepatocyte nuclear factor 3
(HNF-3
).
Furthermore, the PH1 enhancer element also binds the PDX-1
transcription factor itself, which acts cooperatively with adjacent
HNF-3
to regulate its transcriptional potency. This finding suggests
a possible autoregulatory loop as a mechanism for PDX-1 to control its
own expression.
 |
INTRODUCTION |
The mammalian pancreas develops from
the endoderm in the upper duodenal part of the foregut as dorsal and
ventral buds which fuse together to form the organ. Recently,
considerable progress has been made in identifying genes that control
the embryonic development of the islet. Most are transcription factors
such as isl-1, PDX-1, BETA2 (also called NeuroD), Nkx 2.2, Pax4, and Pax6 (for reviews, see references 8, 9, 14, 15, 26, 30, and 31). The first molecular marker
identified that specifies the early pancreatic epithelium was the
homeodomain-containing transcription factor PDX-1 (1, 2,
13). PDX-1 function appears to be well conserved. Its absence in
both humans and mice leads to agenesis of the pancreas, while in the
adult pancreatic islet, its expression is restricted to the
cell,
where it acts as the glucose-sensitive transcription factor of the
insulin gene (19).
Initiation of transcription appears to be the major level of regulation
for many cell type-specific genes. To elucidate the regulation of
pdx-1 gene expression, a 6.5-kb fragment upstream of the
transcription start site of the rat pdx-1 gene (also called stf-1) (28) and a fragment extending from the
region from kb
4.5 to +8.2 of the mouse pdx-1 gene
(33) were shown to direct the expression of the
-galactosidase (
-Gal) reporter gene to pancreatic islet cells in
transgenic mice. Using transiently transfected
cells, it was shown
that the expression of the rat pdx-1 gene, apart from a
proximal E box, depended on a distal enhancer element that was
activated by the cooperative action of the endodermal transcription
factors hepatocyte nuclear factor 3
(HNF-3
) and BETA2
(27). A study of the mouse pdx-1 promoter
revealed that the region involved in regulating
-cell-specific
transcription and directing appropriate developmental and
adult-specific expression in transgenic animals contained an HNF-3-like
element (33). Thus, these initial studies with the rat and
the mouse enhancer-promoter regions suggested that HNF-3
was
necessary for the transcriptional regulation of pdx-1.
As it appears that PDX-1 functions are similar in humans and rodents,
we deduced that conserved sequences located within the 5' flanking
region of the gene would be of importance for its expression. To this
end, we compared sequences 4.5 kb upstream of the start sites of both
the mouse and human pdx-1 genes. The analysis revealed that
in addition to the proximal promoter region described by Sharma et al.
(28), only three relatively short sequences were highly
homologous and they were designated PH1, PH2, and PH3 (for PDX-1
homology regions 1 to 3). Using transient-transfection experiments, we
show that it is preferentially PH1 and PH2 that drive
-cell-specific expression of a reporter gene. Interestingly, using DNase I footprinting analyses and electrophoretic mobility shift
assays (EMSAs), we demonstrate that PH1 binds the transcription factor
PDX-1 itself adjacent to the endodermal factor HNF-3
, where they act
cooperatively to transactivate a PH1-driven reporter construct.
Furthermore, we show that these transcription factors are able to
directly interact in vitro. Similar binding experiments reveal that
only HNF-3
mediates the transcriptional activity of the PH2 domain.
Our results therefore suggest a possible feedback mechanism whereby
PDX-1 regulates its own expression.
 |
MATERIALS AND METHODS |
Cell cultures.
Hamster insulinoma HIT-T15, mouse insulinoma
TC6, and mouse glucagonoma
TC1 cells were cultured in Dulbecco's
modified Eagle medium with 15% horse serum and 2.5% fetal calf serum,
and with 10% fetal calf serum for CHO, HepG2, COS, and NIH 3T3 cells.
One hundred units of penicillin per ml and 100 mg of streptomycin per
ml were added to the media.
Cell transfections.
HIT-T15, CHO, and NIH 3T3 cells were
transfected using the calcium phosphate coprecipitation method
(25) with 1.5-µg quantities of human PDX-1 luciferase
derivatives and 0.5 µg of the internal control cytomegalovirus
-Gal DNA plasmid. In cotransfection experiments, 1.5 µg of the
reporter plasmid together with increasing amounts of expression
plasmids were used as indicated in the figure legends. The cells were
harvested 48 h after transfection. Approximately 100 µg of
protein extracts was used to measure luciferase activity with the
Luciferase Assay System (Promega, Madison, Wis.), and approximately 10 µg was used for the
-Gal assay as described previously
(25). Luciferase activity was measured with a luminometer (EG&G Berthold, Bad Wildbad, Germany) and normalized to
-Gal values.
COS cells were transfected with an expression plasmid for the HNF-3
and HNF-3
genes.
Plasmid constructions.
Plasmids containing fragments of the
human pdx-1 promoter were kindly provided by Alan Permutt
(University of Washington, St. Louis, Mo.). We subcloned and mapped
about 8 kb of the 5' flanking region of the gene and sequenced a DNA
fragment from approximately kb
4.5 to +0.1. The homologous regions
between the mouse and the human pdx-1 genes (PH1, PH2, and
PH3) were synthesized by PCR and subcloned upstream of the minimal
thymidine kinase (TK) promoter of the herpes simplex virus linked to
the luciferase gene (TKLuc), creating PH1- to PH3-TKLuc. Mutations were
also created by PCR, and each construct was validated by sequencing. A
human PDX-1 expression plasmid was constructed as described in
reference 17. Glutathione S-transferase
(GST)-PDX-1 was constructed by subcloning the human PDX-1 cDNA into
pGEX-2T (Amersham Pharmacia Biotech, Uppsala, Sweden) and expressed in
Escherichia coli. The rat HNF-3
cDNA (kindly provided by
R. H. Costa, University of Illinois, Chicago) was subcloned into pcDNA3.
Preparation of cell extracts.
Whole-cell extracts (WCE) were
prepared by resuspension of the cells in high-salt extraction buffer
(400 mM KCl, 20 mM Tris [pH 7.5], 20% glycerol, 2 mM dithiothreitol,
1 mM phenylmethylsulfonyl fluoride, 20 µg of aprotinin per ml, 10 µg of leupeptin per ml). Cell lysis was performed by freezing and
thawing, and the cellular debris was removed by centrifugation at
16,000 × g for 15 min at 4°C. Protein concentrations
were determined by the Bradford method (4).
EMSA.
DNA-binding reactions were performed by incubating 10 µg of WCE with 0.3 ng of 32P-labeled synthetic
double-stranded oligodeoxynucleotides spanning protected areas I and II
of PH1 and protected area I of PH2 in ice for 20 min. The binding
reaction mixtures contained 20 mM HEPES (pH 7.9), 10% glycerol, 150 mM
NaCl, 1 mM dithiothreitol, and 1 µg of poly(dI-dC). Competitor
oligonucleotides were incubated in 100-fold molar excess in the
reaction mixtures for 10 min prior to the addition of the radiolabeled
probe. Oligonucleotides were end labeled by a fill-in reaction using
the Klenow fragment of DNA polymerase I. For supershift experiments, 1 µl of antibodies was added during the preincubation period. The
oligonucleotides used corresponded to area I of PH1
(5'-ACACTTTAATTGGTTTACAG-3'), its mutant
(5'-ACACTTcgcTGGTTTACAG-3'), area II
(5'-CTTTTTTGTTTATTTATCCATA-3'), a mutant of this mutant
(5'-CTTTTTTGcgTATTTATCCATA-3'), area I of the PH2 domain
(5'-AGTGCAAAGTAAACACTCCGG-3'), and its corresponding mutant
(5'-GAAGTGCAAcGTcggtgCTCCGGG-3'), where lowercase
letters indicate the mutations.
DNase I footprint analysis.
For DNase I footprinting assays,
fragments containing PH1 and PH2 (from kb
2.86 to
2.60 and from kb
2.24 to
2.05) were labeled at either end by a fill-in reaction
using the Klenow fragment of DNA polymerase I and
[32P]dCTP to a specific activity greater than
104 cpm/ng of DNA. Probes were incubated with 40 µg of
WCE in a 50-µl reaction mixture containing 10 mM Tris (pH 7.8), 14%
glycerol, 57 mM KCl, 4 mM dithiothreitol, and 0.2 µg of poly(dI-dC).
Following 20 min of incubation at room temperature, 0.5 to 1 U of DNase I (Promega) diluted in 50 mM MgCl2-10 mM CaCl2
was added for 1 min. The reaction was stopped by adding 150 µl of a
stop solution containing 200 mM NaCl, 20 mM EDTA, 1% sodium dodecyl
sulfate, and 5 µg of Saccharomyces cerevisiae tRNA. DNA
was extracted with phenol-chloroform, precipitated with ethanol, and
analyzed on a denaturing 6% polyacrylamide gel. Sequencing reactions
with each probe were performed using the Maxam and Gilbert procedure (18).
GST pull-down assay.
35S-labeled HNF-3
polypeptide was produced using the TNT rabbit reticulocyte
lysate-coupled transcription-translation system (Promega) according to
the manufacturer's protocol. The labeled HNF-3
was incubated with
either GST or GST-PDX-1 proteins bound to glutathione-Sepharose beads
in a binding buffer (10 mM Tris [pH 8.0], 100 mM NaCl, 20 mM EDTA,
1% Triton X-100, 1 mM phenylmethylsulfonyl fluoride) for 2 h at
4°C. Binding reaction mixtures were washed three times and analyzed
by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The gel
was dried and autoradiographed.
Nucleotide sequence accession numbers.
The following GenBank
accession numbers were assigned: for human PDX-1 homologous region PH1,
no. AF227990; for region PH2, no. AF227989.
 |
RESULTS |
-Cell expression of conserved sequences in the human
pdx-1 gene.
Sequence comparison upstream of the human
and mouse pdx-1 promoter regions revealed three highly
conserved regions, PH1, PH2, and PH3. The fragments extending from kb
2.809 to
2.655 (PH1), from
2.233 to
2.097 (PH2), and from
1.952 to
1.668 (PH3) in humans and mice present 94, 81, and 73%
homology, respectively (Fig. 1). Each
region was linked to the luciferase reporter gene driven by the TK
promoter, and the chimeric genes were transiently transfected into
HIT-T15
cells and CHO cells. To various degrees, each fragment
conferred
-cell-specific activation on a heterologous promoter. The
PH1 region exhibits, in both orientations, a 13-fold preferential
induction of luciferase activity in HIT-T15 compared with the level in
CHO cells, whereas PH2 and PH3 exhibit approximately 4- and 2.5-fold
levels of induction of luciferase, respectively (Fig. 1).

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FIG. 1.
Sequence comparison of the 5' flanking regions of the
human and mouse pdx-1 genes. The homologous regions are
designated PH1 (94% identity), PH2 (81% identity), and PH3 (73%
identity), and the promoter region is designated Pr (containing the E
box) in the lower panel. The conserved PH1 to PH3 domains were linked
to the herpes simplex virus TK promoter driving luciferase gene
expression. The parental TKLuc and the PH1-, PH2-, and PH3-TKLuc
vectors were transiently transfected into HIT-T15 (hatched bars) and
CHO (black bars) cells. The activity is shown relative to that of the
basic TKLuc vector. Luciferase activity was normalized to the control
-Gal values. The results represent the means of results from four
experiments (± standard errors of the means [SEM]).
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|
DNase I footprinting of the human PDX-1 PH1 enhancer sequence.
The transcriptional activity driven by the PH1 enhancer element of
human PDX-1 suggested the presence of cis-acting regulatory elements in this region. To assess whether such putative elements interact with specific proteins, we performed a DNase I footprinting analysis using the fragment extending from kb
2.86 to
2.60 as a
probe and extracts from HIT-T15 and CHO cells. As shown in Fig. 2A, two protected regions, area I (kb
2.745 to
2.734) and area II (kb
2.731 to
2.708), were obtained,
each of which displayed different digestion patterns in HIT-T15 and CHO
cell extracts. The homologous PH1 sequences in the human and the mouse
pdx-1 genes are presented in Fig. 2B, and the footprinted
areas indicated. To further characterize the trans-acting
factors binding to the protected regions, double-stranded
oligonucleotides spanning these sequences were synthesized and used as
probes to detect HIT-T15 and CHO proteins by an EMSA.

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FIG. 2.
(A) DNase I footprinting analysis was performed using
the end-labeled fragment spanning the sequences between kb 2.87 and
2.61 and incubated without extract (lane 2) or with CHO cell extract
(lane 3) or HIT-T15 cell extract (lane 4). A C+T sequencing reaction
was run alongside as a marker (lane 1). (B) Homologous human and mouse
PH1 nucleotide sequences (94% identity) of the pdx-1 gene
(GenBank accession number AF227990). The footprinted areas are
indicated as areas I and II.
|
|
The transcription factors PDX-1 and HNF-3
bind to the human PH1
enhancer element.
Using the area I sequence as a probe, a single
-cell-specific binding complex was obtained with
-cell extracts
(Fig. 3A, lane 1, and data not shown),
while no band was detected with any other cell extract tested (Fig. 3A,
lane 6, and data not shown). The DNA complex was competed away by the
wild-type oligonucleotide (Fig. 3A, lane 2) but not by its mutated
counterpart (Fig. 3A, lane 3) or a nonspecific sequence (not shown).
The binding specificity and the presence of a TAAT core sequence in
area I suggested that the PDX-1 transcription factor itself may be a
potential binding candidate. Indeed, anti-PDX-1-specific antibodies
interacted with the protein(s) involved in the unique complex formed
with the area I sequence, causing its supershift as shown in Fig. 3A
(lane 4).

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FIG. 3.
(A) Binding of PDX-1 to area I. An EMSA was performed
using HIT-T15 (lanes 1-5) or CHO (lane 6) cell extracts and a
32P-labeled area I sequence. Competition for binding of
HIT-T15 cell extracts to the labeled area I sequence was performed with
a 100-fold excess of the unlabeled oligonucleotide (lane 2) or with its
mutated counterpart (lane 3). The PDX-1 complex was identified by
demonstrating the supershift of the band in the presence of antiserum
against human PDX-1 (lane 4) but not preimmune serum (PIS) (lane 5).
(B) HNF-3 in pancreatic cells interacts with the area II sequence of
the human PH1 domain. An EMSA was performed using HIT-T15 (lanes 1 to
5), TC6 (lane 6), TC1 (lane 7), HepG2 (lane 8), or CHO (lane 11)
cell extracts and a 32P-labeled area II sequence.
Competition for binding of HIT-T15 cell extracts to the wild-type
labeled area II sequence was performed with a 100-fold excess of the
unlabeled oligonucleotide (lane 2) or with the mutated area II sequence
(mut) (lane 3). HIT-T15 cell extracts were incubated in the presence of
antiserum against HNF-3 (lane 5) or preimmune serum (lane 4). Cell
extracts from HIT-T15 (lane 1) and COS cells (lane 10) or COS cells
transfected with an expression vector for HNF-3 (lane 9) were
incubated with the wild-type area II sequence as a probe. The HNF-3
complex is indicated by an arrow. (C) Transactivation with PDX-1 and
HNF-3 in non- cells. NIH 3T3 cells were transiently cotransfected
with PDX-1 (black bars) or HNF-3 (white bars) expression plasmids or
both (hatched bars) using 50, 100, and 500 ng of the plasmids and
wild-type PH1-TKLuc. Luciferase activity was normalized to the control
-Gal values and is shown relative to that of the basic PH1-TKLuc
vector. The results are the means of results of three to five
experiments (± SEM). (D) The PH1-TKLuc wild type (PH1 wt, white bar)
and the derived constructs carrying mutations in the PDX-1-binding site
(mut-PDX) site (dotted bar), the HNF-3 -binding site (mut-3 )
(hatched bar), or both (black bar) were transiently transfected in
HIT-T15 cells. The results are the means of results of four to five
experiments (± SEM), and the activity of each plasmid is represented
as the percentage of that of the wild-type construct. (E) HNF-3
associates with PDX-1 in a GST pull-down assay. 35S-labeled
HNF-3 polypeptide (lane 1) was incubated with bacterially expressed
GST (lane 2) or GST-PDX-1 (lane 3) proteins. M, protein markers (in
kilodaltons). IVT, in vitro-translated HNF-3 .
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|
In order to elucidate the identities of the proteins binding to the
area II sequences, an EMSA was performed using HIT-T15,

TC6,

TC1,
CHO, COS, and HepG2 cell extracts. A strong complex
was observed in
pancreatic and liver cell extracts (Fig.
3B, lanes
1 and 6 to 8) but
not in COS and CHO cells (Fig.
3B, lanes 10
and 11). The DNA complex
was competed away by the wild-type oligonucleotide
(Fig.
3B, lane 2)
but not by the mutated sequences (Fig.
3B, lane
3) or the area I
sequence (not shown). Sequence analysis revealed
that area II is
contained within an AT-rich region (Fig.
2). Computer
analysis of
binding sites for potential transcription factors
unveiled a core motif
for HNF-3

in this area. To determine whether
HNF-3

was involved
in the observed band, specific antibodies
against this transcription
factor were tested. Figure
3B demonstrates
that the complex formed with
the area II sequence is indeed supershifted
with anti-HNF-3

(lane 5)
but not with anti-HNF-3

(data not shown)
antibody or preimmune serum
(lane 4). Using another approach to
confirm that the protein contained
in the observed complex corresponds
to HNF-3

, extracts from COS
cells transfected with an expression
plasmid for HNF-3

were analyzed
for their interaction with the
area II sequence. Figure
3 clearly
indicates that the HNF-3

complex
in COS cells migrates in a way
similar to that of the complex
obtained in

cells (lane 9 versus
lanes 1 and 6). In a supershift
assay, this complex was shown to be
recognized by anti-HNF-3
antibody (data not shown). Altogether, this
data establishes that
endogenous HNF-3

in HIT-T15 cells specifically
binds the area
II
sequence.
In summary, these results demonstrate that the PH1 conserved sequence
in the human
pdx-1 gene binds, in addition to the HNF-3
transcription factor in the protected region, area II, the product
of
its own gene, i.e., PDX-1 itself in the area I
sequence.
Combinatorial effect of PDX-1 and HNF-3
in the activation of the
PH1 sequence in the human pdx-1 gene.
To
investigate the effect of the PDX-1 and HNF-3
transcription
factors in controlling gene expression driven by the PH1 conserved sequence, we performed transient-transfection experiments with NIH 3T3
cells which endogenously lack both factors. To this end, the PH1-TKLuc
construct was cotransfected with increasing amounts of the PDX-1 and
HNF-3
expression plasmids. As presented in Fig. 3C, HNF-3
and
PDX-1 separately activated the chimeric PH1 gene in a dose-dependent
manner. Most significantly, cotransfection with a constant amount of
PDX-1 and increasing amounts of HNF-3
strongly stimulated the
expression of the gene in a synergistic manner. It appears that both
sites are necessary for the expression of the PH1 chimeric gene since
mutations abolishing either PDX-1 or HNF-3
binding to their
respective sequences significantly impaired the transcriptional
activity of the gene in
cells (Fig. 3D). Furthermore, the PH1
fragment carrying mutations in both sites showed further decreased
transcriptional activity. Each mutated fragment was only partially
transactivated when it was cotransfected with increasing amounts of
either the PDX-1 or HNF-3
gene (data not shown). In an attempt
to investigate a possible interaction between these two
transcription factors, we performed a GST pull-down experiment where
35S-labeled HNF-3
polypeptide was found to bind
efficiently to glutathione-Sepharose beads containing GST-PDX-1 but
not GST alone (Fig. 3E). PDX-1 and HNF-3
interaction was disrupted
using a buffer containing the detergent deoxycholate (not shown). In
light of the results presented, we suggest that PDX-1 and HNF-3
can directly interact to activate pdx-1 gene expression.
HNF-3
binding to the PH2 conserved sequence in the human
pdx-1 gene.
The PH2 conserved sequence also showed
preferential
-cell-specific expression, albeit to a lesser degree
than the PH1 sequence (Fig. 1). In order to analyze the potential
regulatory sequences within this region which interact with extracts
from
cells and non-
cells, DNase I footprinting analysis was
performed. A fragment extending from kb
2.24 to
2.05 was used as a
probe together with extracts from HIT-T15 and CHO cells. The protected
sequence (kb
2.120 to
2.1) shows a hypersensitive site in the
presence of HIT-T15 cell extracts (Fig.
4A, lane 5) as well as with extracts from
TC1 and HepG2 cells (data not shown). The homologous PH2 sequences
of the human and the mouse pdx-1 genes are presented in Fig.
4B, and protected area I is indicated.

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FIG. 4.
(A) A DNase I footprinting analysis was performed using
the end-labeled fragment spanning the sequences between kb 2.27 and
2.05 and incubated without extract (lanes 2 and 3) or with extracts
from CHO (lane 4) and HIT-T15 (lane 5) cells. A G+A sequencing reaction
was run alongside as a marker (lane 1). (B) Homologous human and mouse
PH2 nucleotide sequences (81% identity) of the pdx-1 gene
(GenBank accession number AF227989). The area I footprinted region is
indicated.
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To further characterize the
trans-acting factors binding to
the footprinted region, a double-stranded oligonucleotide spanning
this
sequence was synthesized and used as a probe to detect HIT-T15,
HepG2,
and CHO proteins by an EMSA. Figure
5A
shows a single binding
complex in HIT-T15 (lane 1) and in HepG2 (lane
4) but not in CHO
(lane 5) cell extracts with the PH2 protected
sequence. The complex
was competed away with the wild-type
oligonucleotide (lane 2)
but not with a mutated one (lane 3). The
binding pattern in HIT
and HepG2 extracts as well as a core binding
sequence for the
HNF-3

transcription factor prompted us to test the
interaction
with antibodies against this transcription factor. As shown
in
Fig.
5B, anti-HNF-3

(lane 3) but not anti-HNF-3

(lane 2)
antibody
supershifted the single complex. In confirmation of these
results,
cell extracts from COS cells transfected with an expression
plasmid
for HNF-3

(Fig.
5C, lane 2) but not for HNF-3

(Fig.
5C,
lane
3) formed a complex with the PH2 protected sequence which migrates
in a way similar to that of the complex obtained in HIT-T15 cells
(lane
1). The protected sequence also showed a core-binding site
(RTAAAYA)
for the forkhead-related family of transcription factors,
the
fork-head-related activators (FREACs) (
16,
24). However,
unlike with HNF-3

, increasing amounts of FREAC-1 (or FREAC-2
and
FREAC-4, data not shown) had no effect on the transactivation
of the
PH2-TKLuc construct (Fig.
5D).

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FIG. 5.
HNF-3 in pancreatic cells interacts with the area I
sequence of the human PH2 domain. (A) An EMSA was performed using
HIT-T15 (lanes 1 to 3), HepG2 (lane 4), or CHO (lane 5) cell extracts
and a 32P-labeled area I sequence of the PH2 domain.
Competition for binding of HIT-T15 cell extracts to the labeled area I
sequence was performed with a 100-fold excess of the unlabeled
oligonucleotide (lane 2) or with its mutated counterpart (mut) (lane
3). (B) An EMSA was performed with HIT-T15 cell extracts incubated with
the labeled probe (lane 1) in the presence of antiserum against
HNF-3 (lane 2), HNF-3 (lane 3), or preimmune serum (PIS) (lane
4). (C) Cell extracts from HIT-T15 (lane 1) and COS (lane 4) cells or
COS cells transfected with an expression vector for HNF-3 (lane 2)
or for HNF-3 (lane 3) were incubated with the wild-type area I
sequence as a probe. The HNF-3 complex is indicated by an arrow. (D)
Transactivation with HNF-3 or FREAC-1 in non- cells. NIH 3T3
cells were transiently cotransfected with HNF-3 (black bars) or
FREAC-1 (hatched bars) expression plasmids and wild-type PH2-TKLuc. The
insert represents the activity of a luciferase gene driven by a
multimerized FREAC site cotransfected by increasing amounts of the
FREAC-1 expression plasmid. Luciferase activity was normalized to the
control -Gal values and is shown relative to that of the basic
PH2-TKLuc vector. The results are the means of results of three to six
experiments (± SEM).
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 |
DISCUSSION |
PDX-1 has been shown to be expressed early during development in
cells of both exocrine and endocrine origins. Later it becomes restricted primarily to
cells, where it regulates the expression of
-cell-specific genes and, most importantly, mediates the glucose effect on insulin gene transcription. It was therefore important to
identify the molecular mechanisms that specifically govern the
expression of PDX-1 in the mature
cell. It was known from previous
studies that fragments carrying, respectively, upstream sequences
extending to kb
6.5 and
4.5 of the rat (28) and the
mouse (33) pdx-1 genes contain the information
necessary to target PDX-1 expression to islet cells. Therefore, in
order to analyze the potential regulatory elements of the human
pdx-1 gene, we sequenced about 4.5 kb in the 5' flanking
region of the gene and compared it to that of the mouse
pdx-1 gene. A striking divergence at the nucleotide level
was observed between the two species. In addition to the promoter
region previously described by Sharma et al. (28), only
three short conserved regions, designated PH1, PH2, and PH3, were
revealed. Each of these regions confers
-cell-specific expression
with various levels of potency on a reporter gene driven by the TK
promoter. Since the
-cell specificity of PH3 was relatively weak
(2.5-fold), we concentrated our efforts on investigating the
cis-acting regulatory elements of the PH1 and PH2 conserved
regions and the binding factors which are responsible for their
transcriptional activity.
DNase I footprint analysis of the PH1 enhancer element, using HIT-T15
and CHO cell extracts, led to the identification of two protected
AT-rich sequences with different digestion patterns, designated areas I
and II. We analyzed various cell extracts for their capacity to bind to
the area I sequence by EMSA. Surprisingly, a single complex was
obtained exclusively with
-cell extracts. The
-cell specificity
and core TAAT sequences raised the possibility that the PDX-1
transcription factor itself might bind to area I. Indeed, antibodies
raised against the PDX-1 protein interacted with the
-cell-specific
complex, confirming its binding to the PH1 element. Furthermore, we
demonstrated that in the non-
-cell NIH 3T3 cell line, PDX-1 strongly
stimulated transcriptional activity driven by PH1.
We have previously demonstrated that in the normal adult islet, PDX-1
(previously named GSF) acts as a glucose sensitive factor controlling
the physiological expression of the insulin gene (19). Similar to the results obtained here, we showed that in
non-insulin-producing cell lines, PDX-1 strongly transactivates the
human insulin promoter. However, in
cells, high levels of ectopic
PDX-1 has an inhibitory effect on the expression of the human insulin
gene (17). We suggested that this repression might occur by
a protein-protein interaction; e.g., PDX-1 might compete for a
coactivator present only in limited amounts in normal adult islets.
Cooperative interactions between PDX-1 and other transcription factors
have been previously described by several groups. Peers et al.
(22) have reported the involvement of the helix-loop-helix
protein E47 in inducing insulin gene expression. Recently, Ohneda et
al. (20) have shown that the transcription factor BETA2 and
the nuclear high-mobility group protein I (Y) contribute to the
PDX-1-E47 synergy, through direct interaction with the homeodomain of
PDX-1.
It was also demonstrated that PDX-1 forms a heterodimeric complex with
Pbx, the mammalian homologue of the drosophila extradenticle. This
heterodimer bound the TAAT sequence of the somatostatin promoter but
not the same sequence (A3 motif) of the insulin promoter, suggesting
that this preference may form the basis for target site selection in
developing islet cells (23) and that the transcriptional function of the gene may thus be highly context dependent.
The footprinting sequences described as region II in PH1 and region I
in PH2 showed similarity to the consensus binding site for HNF-3
(21, 24). We were able to show that it is indeed HNF-3
that binds and stimulates the activity of the human PH1 and PH2
enhancer elements in non-
cells. While this paper was under review,
Gerrish et al. (11) also reported that conserved sequences
between the human and mouse pdx-1 genes (termed areas I and
II) confer
-cell-selective gene expression. Their data supported the
fact that HNF-3
associates with these regions and is necessary for
area I transcriptional activity. In addition, the levels of PDX-1 mRNA
were markedly impaired in embryonic stem cells in which the HNF-3
gene was inactivated and upon differentiation to embryoid bodies. In
the rat pdx-1 gene, Sharma et al. (27) characterized a distal enhancer element to which the nuclear factors HNF-3
and BETA2 bind and cooperatively induce PDX-1 expression in
islets. Thus, it can be stated that at least some aspects of PDX-1
expression rely on the transcription factor HNF-3
.
HNF-3
, a member of the forkhead and winged-helix family of
transcription factors, is essential for endodermal cell lineages (12, 34). It is structurally related to histone H5, which can alter the nucleosomal structure and thus prime target genes for
expression by opening the chromatin structure to provide promoter access to other transcription factors (6, 29). Since
HNF-3
is not restricted to
cells, the selective transcription of
pdx-1 is likely to rely on an additional factor(s). Our
findings that the PH1 enhancer element binds both HNF-3
and PDX-1,
that mutations in each individual site dramatically impair its
transcriptional activity, and in addition that HNF-3
and PDX-1
directly interact in vitro suggest cooperativity between these factors.
We therefore propose that a possible feedback mechanism might control
the expression of PDX-1 at different stages during development. It is
conceivable that the functional conservation of different enhancer
elements in the 5' flanking region of the pdx-1 gene is
crucial for its maintenance and cell specificity. Indeed, multiple
enhancer elements were shown to regulate CD8 expression in diverse
subsets of cells during development as was shown in vivo for T cells by
Ellmeier et al. (10).
The control of pdx-1 gene expression in many aspects
resembles that of the tissue-specific POU domain factor Pit-1 (also
called GHF-1), which is required for the formation of three cell
phenotypes in the anterior pituitary gland (3, 32). The
Pit-1 gene utilizes distinct enhancers for initial gene activation and
for subsequent autoregulation required for the maintenance of its own
expression (7). Like PDX-1, Pit-1 also shows a biphasic
pattern of expression during ontogeny. Its transcripts are observed in
the rat neural tube and neural plate (embryonic days 10 to 11) and
disappear thereafter (day 13), only to reappear exclusively in the
anterior pituitary gland (day 15) just before activation of prolactin
and growth hormone. Interestingly, it was shown that Pit-1 can
positively autoregulate the expression of its own gene by binding to
two Pit-1-binding elements (5). The results presented here
suggest that PDX-1 may well be regulated in a similar way. Distinct
regulatory elements may function at specific stages during development,
and an autoregulatory loop may be necessary for its maintenance in the
adult
cell. To fully understand the functional relevance of these
distinct regulatory elements, in vivo testing with transgenic models
will be required.
 |
ACKNOWLEDGMENTS |
We thank Roland Stein (Vanderbilt University, Nashville, Tenn.)
for the mouse pdx-1 sequence and Alan M. Permutt (Washington University) for the human pdx-1 gene. We are infinitely
grateful to Robert Costa (University of Illinois at Chicago) for the
gifts of HNF-3
and HNF-3
expression vectors and antibodies and to Peter Carlsson (Göteborg University, Göteborg, Sweden) for
FREAC-1, FREAC-2, and FREAC-4 expression vectors. Our sincere thanks go to Rahel Oron for excellent technical help.
This work was supported by grants from the Juvenile Diabetes Foundation
International, BIOMED 2 (BMH4-CT98-3448), and the Israel Science Foundation.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Endocrinology & Metabolism, Hadassah University Hospital, P.O. Box 12 000, Jerusalem, 91120 Israel. Phone: 972-2-677 83 98. Fax: 972-2-643 79 40. E-mail: Danielle{at}md2.huji.ac.il.
 |
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