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Molecular and Cellular Biology, December 2000, p. 9120-9126, Vol. 20, No. 24
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
DREAM-
CREM Interaction via Leucine-Charged
Domains Derepresses Downstream Regulatory Element-Dependent
Transcription
Fran
Ledo,
Angel M.
Carrión,
Wolfgang A.
Link,
Britt
Mellström, and
José R.
Naranjo*
Departamento Biología Molecular y
Celular, Centro Nacional de Biotecnología, CSIC, Madrid, Spain
Received 14 June 2000/Returned for modification 22 August
2000/Accepted 25 September 2000
 |
ABSTRACT |
Protein kinase A-dependent derepression of the human prodynorphin
gene is regulated by the differential occupancy of the Dyn downstream
regulatory element (DRE) site. Here, we show that a direct
protein-protein interaction between DREAM and the CREM repressor
isoform,
CREM, prevents binding of DREAM to the DRE and suggests a
mechanism for cyclic AMP-dependent derepression of the prodynorphin
gene in human neuroblastoma cells. Phosphorylation in the
kinase-inducible domain of
CREM is not required for the interaction,
but phospho-
CREM shows higher affinity for DREAM. The interaction
with
CREM is independent of the Ca2+-binding properties
of DREAM and is governed by leucine-charged residue-rich domains
located in both
CREM and DREAM. Thus, our results propose a new
mechanism for DREAM-mediated derepression that can operate
independently of changes in nuclear Ca2+.
 |
INTRODUCTION |
Transcriptional derepression is an
important mechanism for the accurate control of gene expression.
Transcriptional repressors can bind directly to DNA or act indirectly
by interacting with other DNA-associated proteins (23, 32).
DREAM, a calcium-binding protein, represses basal expression of target
genes through specific interaction with downstream regulatory elements
(DREs) in the DNA (5, 6). Release of binding of DREAM from
the DRE results in derepression, a process that is regulated by
Ca2+ and protein kinase A (PKA) activation (5,
6). Other central players in the nuclear response to cyclic AMP
(cAMP) and Ca2+ are activator and repressor basic
region-leucine zipper (LZ) transcription factors that bind to
cAMP-responsive promoter elements (CREs) (10, 15, 25). They
include proteins encoded by the CREB and CREM genes whose function is
tightly regulated via phosphorylation by several kinases, including PKA
and Ca2+-calmodulin-dependent kinases (8, 12,
13). As such, they represent the convergence point for various
signaling cascades.
The transcriptional repressor DREAM contains four EF hands, of which
three (II, III, and IV) are responsible for the binding of calcium
ions. In the absence of stimulated levels of nuclear calcium, DREAM
binds with high affinity to the DRE sequence as a tetramer. Upon
stimulation and increase in intracellular calcium, DREAM detaches from
DNA without disruption of the tetrameric structure (6). The
regulation by intracellular Ca2+ of DREAM binding to DRE
sites is a general mechanism that depends primarily on the EF-hand
domains of DREAM. Mutation of two key amino acids within any of the
functional EF hands results in mutated DREAM forms that stay bound to
DNA also after calcium stimulation. Since DREAM binds to DRE sites as a
tetramer, DREAM mutants insensitive to Ca2+ behave as
dominant negative mutants in a background of wild-type DREAM
(unpublished observation). Similarly, PKA activation also results in
loss of DREAM binding to the DRE and derepression of the target gene
prodynorphin in human neuroblastoma cells (5). The
molecular mechanism or the domains in DREAM that mediate this derepression by cAMP are unknown, and consensus domains for PKA phosphorylation have not been identified in DREAM (6).
Moreover, derepression of DRE-dependent transcription is cell specific, further supporting the idea that the mechanism in this case is not
intrinsic to the DREAM molecule but involves a more elaborated process
perhaps implicating other proteins or cell-specific mechanisms.
Recently, three proteins related to DREAM, named KchIP1 to -3, have
been found in a two-hybrid screening to interact with the
amino-terminal domain of Kv4.2 potassium channels (2). One
of them, KchIP-3, is identical to DREAM, and the interaction with the
Kv4 potassium channels modulates A-type potassium currents in a
Ca2+-dependent manner (2). The interaction with
the potassium channel occurs whether calcium is present or not.
However, the change in KchIP-3/DREAM conformation that follows binding
to calcium profoundly affects channel properties (2).
Interestingly, A-type potassium currents are also modulated by PKA,
although the mechanism remains elusive (18). Furthermore,
also using a yeast two-hybrid screening, another protein identical to
DREAM, named calsenilin, was found to interact with the
carboxy-terminal region of presenilin-2 (4). In this work,
mutants of calsenilin were not described, and a possible regulation of
the interaction by calcium or PKA activation remains to be determined.
Taken together, these results indicate that DREAM, KchIP-3, or
calsenilin might have pleiotropic functions through the interaction
with specific DNA sequences and/or with proteins in different cell
compartments (2, 4, 6).
In this study, we aimed to determine whether CREM or CREB proteins
functionally interact with DREAM and are involved in the derepression
at DRE sites observed after forskolin treatment in NB69 and SK-N-MC
human neuroblastoma cells (5). Results from transient
transfection experiments as well as in vitro interactions using
recombinant proteins demonstrate that a calcium-independent interaction
between
CREM and DREAM mediates unbinding of DREAM from DRE sites
and derepression of the prodynorphin gene after forskolin treatment in
human neuroblastoma cells.
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MATERIALS AND METHODS |
Cell culture, transfection, and CAT analysis.
Cells were
grown in Dulbecco modified Eagle medium (DMEM) (HEK293) or DMEM-F12
(NB69 and SK-NMC) supplemented with 10% fetal calf serum, 2 mM
Glutamax-I, and 50 µg of gentamicin/ml. Transfections by calcium
phosphate precipitation and chloramphenicol acetyltransferase (CAT)
activity assays were performed as described elsewhere (5). A
total amount of 4.5 µg of plasmid DNA was used per 35-mm-diameter dish. The reporter plasmid pHD3CAT and the expression vectors pDREAM
and pEFmutDREAM have been previously described (5, 6). Expression vectors for CREB and CREM proteins have been described elsewhere (9, 10, 15). In cotransfection experiments with two expression vectors, the DNA ratio was always 1:1. Mutations in
DREAM and CREM were introduced by site-directed mutagenesis using the
Quick-Change method (Stratagene).
EMSA.
Electrophoretic mobility shift assays (EMSA) using
recombinant proteins were performed as described elsewhere (5,
6) with 50 ng of each interacting protein in a ratio of 1:1,
unless otherwise indicated. Recombinant CREM and CREB proteins were
prepared as described elsewhere (17). Recombinant DREAM was
purified by phenyl-Sepharose (Pharmacia) chromatography as described
previously (34). Amounts of recombinant proteins were
measured by the Bradford method, and batch-to-batch variability was
analyzed by silver staining or by immunoblotting after polyacrylamide
gel electrophoresis. In vitro phosphorylation by PKA (26)
was performed with 50 ng of the purified catalytic subunit of PKA
(Sigma) and incubation for 1 h at 30°C. Where indicated, calcium
was added to the incubation reaction at a final concentration of 10 µM.
Pull-down experiments.
Recombinant
CREM or
CREMS68A
proteins (0.5 µg) were incubated with an excess of His-tagged DREAM
or DREAM protein for 1 h at 37°C in a final volume of 100 µl
of binding buffer (10 mM HEPES [pH 7.9], 100 mM NaCl, 100 mM KCl, 8 mM MgCl2, 20% glycerol, 1 mM
-mercaptoethanol, 0.5 mM
phenylmethylsulfonyl fluoride). When indicated, 200 ng of PKA and/or 50 µM CaCl2 were added to the reaction. After 1 h, 10 µl of Ni-nitrilotriacetic acid agarose (Quiagen) was added, and the
mixture was incubated for an additional 30 min at room temperature and
constant shaking. Complexes were then centrifuged, washed three times
in 1 ml of binding buffer, and separated by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis. For the Western blot
analysis, antibodies for CREB (NEN) or CREM (Santa Cruz Biotechnology)
were used as recommended by the supplier.
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RESULTS |
Overexpression of
CREM derepresses DRE-dependent
transcription.
To determine whether CREM or CREB proteins
functionally interact with DREAM and are involved in the derepression
at DRE sites after forskolin treatment (5), we performed
cotransfection experiments in NB69 cells with pHD3CAT, a reporter that
contains a DRE site but no CRE site (5), together with
expression vectors for CREB or the different CREM and ICER isoforms
(Fig. 1a). Interestingly, we found that
overexpression of
CREM mimicked the effect of forskolin and induced
expression from the pHD3CAT reporter (Fig. 1b). The effect was specific
since none of the other CREM isoforms tested or CREB were able to
derepress pHD3CAT (Fig. 1b). Similar results were obtained after
transient transfections in SK-NMC cells (data not shown). To exclude a
direct effect of
CREM binding to the pHD3CAT reporter, we performed
similar experiments with HEK293 cells, a cell line that does not
express DREAM (6) and does not have detectable levels of
CREM proteins (unpublished results). Overexpression of DREAM in HEK293
cells repressed basal expression of the pHD3CAT reporter as previously
described (6), while overexpression of CREM isoforms or CREB
failed to alter the basal expression of pHD3CAT (Fig. 1c). However,
when cotransfected with DREAM,
CREM completely abolished the
repression by DREAM (Fig. 1c).
CREM, a weak repressor isoform
similar to
CREM but containing a glutamine-rich Q1 domain
(3), also blocked the effect of DREAM (Fig. 1a and c).
Importantly, deletion of DNA-binding/dimerization LZ domain I at the C
terminus of
CREM (
CREM
LZ) or substitution with LZ domain II
(
CREM) did not block DREAM-mediated repression (Fig. 1a and c).
Furthermore, we did not observe derepression of the pHD3CAT reporter
after coexpression of DREAM with an ICER isoform (I, I
, II, or
II
) (Fig. 1c and data not shown). ICER proteins are generated from
the alternative P2 promoter within the 3' end of the CREM gene and
therefore lack the N-terminal half of CREM containing the
kinase-inducible domain (KID) (9, 10, 21) (Fig. 1a). These
data are in agreement with the results for NB69 and SK-NMC cells and
point toward a functional interaction between
CREM and DREAM, which
displaces DREAM from the DRE sites.

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FIG. 1.
Effect of CREM on DRE-dependent transcription. (a)
Scheme showing the modular structure of the CREM and CREB genes and the
different isoforms used. DBD, DNA-binding domain. (b) Transactivation
by CREM of the DRE-containing reporter pHD3CAT after transient
transfection in NB69 cells. For comparison, the effect of forskolin
treatment is shown (hatched bar), as well as the lack of effect of
other CREM isoforms, ICER-I, or CREB. (c) Repression by DREAM (black
bars) of the pHD3CAT reporter in HEK293 cells is relieved after
cotransfection with CREM or CREM. For comparison, the lack of
effect of CREM LZ, CREM, ICER-I, or CREB is shown. White bars
represent the corresponding control transfections in the absence of
DREAM.
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Recombinant
CREM blocks binding of DREAM to DRE sites.
To
confirm a specific
CREM-DREAM interaction, recombinant proteins were
analyzed by gel mobility shift using the DRE as a probe. The results
showed that
CREM does not bind to the DRE probe, but that the
formation of
CREM-DREAM heteromers displaced DREAM from the DRE site
in a protein ratio-dependent manner (Fig. 2a and
c). Ratios of
CREM to DREAM in the
order of 0.2:1 or lower did not modify the DREAM-DRE retarded band, but
ratios higher than 1:1 eliminated the DRE band (Fig. 2a). Since
phosphorylation of Ser68 in the N-terminal part of
CREM is an
important determinant of its activity (13, 21), we checked
whether this affects the interaction with DREAM. In vitro
phosphorylation of
CREM using purified PKA (26) increased
its ability to block the DREAM-DRE retarded band (Fig. 2a). The effect
of PKA was specific since it was not observed when we used the
phosphorylation mutant
CREMS68A (Fig. 2a) and was blocked by
coincubation with H89, a selective inhibitor of PKA (data not shown).
Consistent with the absence of PKA phosphorylation sites in DREAM
(6), incubation of DREAM with PKA did not modify its binding
to the DRE (Fig. 2a). Furthermore, in agreement with the transfection
results (Fig. 1b and c),
CREM also displaced the DREAM-DRE retarded
band, while other CREM isoforms or CREB failed to affect the DRE band
whether phosphorylated or not (Fig. 2b). Similar results were obtained
using nuclear extracts from NB69 cells as a source of endogenous DREAM
and nuclear extracts from stably transfected COS cell lines
overexpressing the different CREM isoforms (data not shown). Moreover,
since Ca2+ is important for the binding of DREAM to the
DRE, we checked whether Ca2+ affects the interaction with
CREM. Pull-down experiments using His-tagged recombinant DREAM
protein showed that the interaction with
CREM was not modified by
the presence of Ca2+ even at concentrations that preclude
binding of DREAM to the DRE (Fig. 2c). Interestingly, the potentiating
effect of PKA on the DREAM-
CREM interaction was also observed in
pull-down experiments with
CREM and confirmed by its absence when we
used the phosphorylation mutant
CREMS68A (Fig. 2c). Taken together,
these results support a specific protein-protein interaction between
CREM and DREAM resulting in loss of binding to DRE sites. Since
Ca2+ does not affect the interaction, unbinding of DREAM
from DRE sites by Ca2+ and by
CREM are independent
mechanisms that could operate synergistically.

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FIG. 2.
In vitro analysis of the DREAM- CREM interaction. (a)
EMSA with a DRE probe showing the interaction between recombinant DREAM
and CREM proteins at different ratios and its modulation by PKA
phosphorylation. (b) EMSA with a DRE probe showing the interaction
between DREAM and CREM and the lack of effect of other CREM
isoforms, ICER, and CREB. A DREAM/CRE-binding protein ratio of 1:1 was
used. For comparison, the interaction between CREM and DREAM is
shown. The lack of binding of CREM and CREM to the DRE probe is
shown. (c) Pull-down experiments showing that the DREAM- CREM
interaction is increased after PKA phosphorylation and not affected by
calcium. The lack of effect of PKA on the phosphorylation mutant
CREMS68A is shown.
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Two LCD domains in
CREM mediate the interaction with DREAM.
We next wanted to investigate the domains in
CREM responsible for
the interaction with DREAM. Based on the results with the different
CREM isoforms, we could hypothesize that at least two domains in
CREM are involved, one located within the LZ domain I and a second
in the N-terminal half of
/
CREM including the KID but not the Q1
domain (Fig. 1a). Direct comparison of LZ domain I (
CREM) and domain
II (
CREM) revealed differences in 13 amino acids, 6 of which are at
the C-terminal end (Fig. 3a). Premature termination of
CREM by insertion of a TAA stop codon at position 224 resulted in a truncated
CREM protein,
CREM
223, that retained its capacity to interact with DREAM in transfection experiments (Fig.
3B) and in band shift assays (Fig. 3c). This result indicates that the
difference in these six residues between
CREM and
CREM is not
responsible for their difference in interaction with DREAM. Of the
other different amino acids, two nonconservative substitutions at
positions 212 and 218 were notable since they flank the sequence LIEEL,
which could correspond to a leucine-charged residue-rich domain (LCD)
(14, 22, 31). Substitution of the flanking amino acids T212
and K218 in
CREM by the corresponding amino acids in
CREM, K, and
E, respectively, originated an
CREM mutant (
CREM
212,218) which
failed to block DREAM repression in transfection experiments (Fig. 3b).
Moreover,
CREM
212,218 did not interact with recombinant DREAM in
retardation assays (Fig. 3c). Conversely, substitution of the flanking
amino acids K212 and E 218 in
CREM by T and K, respectively, created
the mutant
CREM
212,218, which was able to interact with DREAM and
block DREAM repression and the DRE retarded band (Fig. 3b and c).
Furthermore, mutation of the putative LCD in
CREML217F
prevented its interaction with DREAM (Fig. 3b and c). These results
indicate that the LCD sequence TLIEELK in the LZ of
CREM is
necessary for the interaction with DREAM that prevents binding to the
DRE. However, the absence of interaction between ICER-I, which contains
the LCD motif at the LZ and DREAM, indicates that this motif is
necessary but not sufficient. To investigate residues in the N-terminal
half of
CREM, absent in ICER-I, that are necessary for the
interaction with DREAM, we focused on the region containing the KID
domain since the interaction is affected by phosphorylation at serine
68 in
CREM. Again we observed the presence of a putative LCD motif,
ILNEL, located at position 72 in
CREM. Mutation of the two L
residues at positions 73 and 76 to V resulted in mutant
CREML73,76V,
which did not block DREAM-mediated repression and did not show any
interaction with DREAM in vitro (Fig. 3b and c). These results
identified the sequence ILNEL located within the KID region as part of
the second region necessary for the interaction with DREAM.
Interestingly, both LCD sequences in
CREM necessary for the
interaction with DREAM are conserved in
CREM-I and CREB (10,
15), but neither of these proteins blocked binding of DREAM to
the DRE (Fig. 1 and 2 and data not shown). This suggests that the
spacing between the two LCD sequences in
CREM is crucial and that
the insertion of the glutamine-rich Q2 domain in CREB or
CREM-I
prevents the interaction. The results obtained with
CREM support
this assumption. Furthermore, this opens the possibility that CREB
isoforms lacking the Q2 domain (16) could also interact with
DREAM and mediate DRE-dependent derepression. Taken together, these
results reveal the presence in CRE-binding proteins of a new type of
LCD (L/IL/IxxL) that in the case of
CREM is responsible for its
two-site interaction with DREAM.

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FIG. 3.
Two LCDs in CREM are necessary for the interaction
with DREAM. (a) Alignment of LZ domains I and II from CREM and
CREM, respectively, showing the 13-amino-acid difference and the
positions of the different mutations and the truncated form
CREM 223. The putative LCD is boxed. Transient transfections in
HEK293 cells (b) and EMSA with recombinant proteins (c) show the lack
of interaction of CREM 212,218, CREML217F, and CREML73,76V
with DREAM. The gain of function in mutant CREM 212,218 is also
shown. Values of CAT activity after transfection with wild-type or
mutant CREM, in the absence (open bars) or presence (black bars) of
DREAM, are relative to basal acetylation of reporter pHD3CAT in
cotransfection with empty reporter vector. Equal amounts of DREAM and
CREM proteins were used in the EMSA.
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Two LCDs in DREAM mediate the interaction with
CREM.
To
investigate the domains in DREAM responsible for the interaction with
CREM, we searched for LCDs within DREAM since it has been shown that
the mutual interaction between CREB-binding protein (CBP) and p/CIP
depends on LCDs located in both proteins (31).
Interestingly, we identified three putative LCDs within the DREAM
sequence, at positions 15, 47, and 155. Absence of LCD-15 in a
truncated DREAM construct that starts at M43 (DREAM43-256) did not
modify DREAM repressor activity or its interaction with
CREM in
transfection experiments (Fig. 4a) or in
vitro (Fig. 4b). A double mutation within LCD-47, CLVKWIL, a sequence
that resembles more an LCD of the CoRNR box type (19),
yielded a mutant, DREAML47,52V, that still repressed transcription from DRE reporters and did not interact with
CREM in transfection experiments (Fig. 4a) or in vitro (Fig. 4b). Finally, a single mutation
within LCD-155, LSILL, created the mutant DREAML155V, whose binding to
DRE sites was not affected by the presence of
CREM in transfection
experiments (Fig. 4a) or in vitro (Fig. 4b). Importantly, DREAM mutants
unable to interact with
CREM because of the mutation at the LCDs
still bound to DRE in a calcium-dependent manner (Fig. 4c) as
previously reported for wild-type DREAM (6). These results
identified two LCD sequences in DREAM that are necessary for the
interaction with
CREM, reinforcing the specificity of the
interaction. However, these results do not imply a direct interaction
between LCDs in DREAM and
CREM, although a mutual interaction
between LCDs cannot be excluded.

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FIG. 4.
Two LCDs in DREAM are necessary for the interaction with
CREM. Transient transfection in HEK293 cells (a) and EMSA with
recombinant proteins (b) show that DREAM LCD mutants DREAML47,52V and
DREAML155V are no longer able to interact with CREM. On the other
hand, truncated DREAM43-256 missing a putative LCD at position 15 still
interacts with CREM. Values of CAT activity after transfection with
wild-type or mutant DREAM, with (gray bars) or without (open bars)
CREM, are relative to basal acetylation of reporter pHD3CAT in
cotransfection with empty reporter vector. Equal amounts of CREM and
DREAM proteins were used for the EMSA. (c) EMSA with a DRE probe
showing the unaffected sensitivity to Ca2+ of the DREAM LCD
mutants. For comparison, the lack of Ca2+ sensitivity of
the dominant negative mutant EFmDREAM is shown.
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Derepression of the prodynorphin gene is mediated by the
CREM-DREAM interaction.
The results described above support a
mechanism of derepression at DRE sites based on a cell-specific
increase in
CREM and/or its phosphorylation after PKA activation and
the interaction with DREAM. To investigate whether this mechanism of
derepression indeed mediates the in vivo derepression of the
prodynorphin gene in human neuroblastoma cells, we used Western blot
analysis to monitor changes in CREM proteins after forskolin
administration. Previously, we had reported that treatment of SK-NMC
cells with forskolin resulted in a robust and sustained loss of the
DREAM-DRE interaction and a parallel accumulation of prodynorphin mRNA
(5). The effect was maximal 2 to 3 days after treatment
(5). Western blot analysis with an antibody able to
recognize all CREM and ICER isoforms showed an increase of CREM
repressor isoforms in the 30-kDa range (including
CREM) as well as
in ICER isoforms (Fig. 5a).
Interestingly, the accumulation of CREM repressor proteins was also
maximal 2 to 3 days after treatment. Moreover, the effect of forskolin
on the accumulation of CREM repressors was specific, since levels of
CREM or CREB proteins were not modified at any time after forskolin
treatment (Fig. 5a). Conversely, in NB69 cells a rapid and transient
increase in CREM repressor proteins (data not shown) correlates with a
brief increase in prodynorphin mRNA (5). Thus, a temporal
correlation could be observed between the unbinding of DREAM from the
DRE, the induction of the target gene prodynorphin throughout
derepression (5), and the sustained (SK-NMC) or transient
(NB69) cell-specific accumulation of CREM repressor proteins in human
neuroblastoma cells after forskolin exposure. These data strongly
suggest that a specific interaction between
CREM and DREAM in vivo
derepresses expression of the prodynorphin gene. To further
substantiate this correlation, we analyzed prodynorphin mRNA in SK-NMC
cells after overexpression of
CREM or a mutant (
CREML73,76V)
unable to interact with DREAM. Confirming our model of derepression,
CREM overexpression resulted in a robust increase in prodynorphin
mRNA, while the mutant did not modify basal levels of the transcript
(Fig. 5b). Western blot analysis after CREM overexpression showed
similar levels of wild-type and mutant
CREM proteins in respective
cell extracts (Fig. 5c).

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FIG. 5.
The CREM-DREAM interaction directs prodynorphin gene
expression in human neuroblastoma cells after forskolin treatment. (a)
Western blot analysis of the accumulation of CREM repressor proteins in
SK-NMC cells at different times following forskolin treatment. The lack
of effect on the levels of CREM and CREB proteins is also shown. (b)
Northern blot showing the induction of prodynorphin mRNA in SK-NMC
cells after CREM overexpression and the lack of effect of mutant
CREML73,76V. Levels of -actin are shown as a control of the
loading of each lane. (C) Western blot analysis showing similar levels
of overexpressed wild-type or mutant CREM in SK-NMC cells.
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 |
DISCUSSION |
Here we have identified a novel mechanism of DRE-dependent
transcriptional derepression triggered by PKA activation. It involves a
specific protein-protein interaction between DREAM and
CREM that is
mediated by LCD motifs present in both proteins and results in loss of
binding of the transcriptional repressor DREAM to DRE sites.
Furthermore, we have demonstrated that the expression of a bona fide
target gene of DREAM repression/derepression, the prodynorphin gene, is
increased in human neuroblastoma cells as a consequence of the
CREM-DREAM interaction.
Expression of the CREM gene is controlled by an upstream regulatory
region (P1) that gives rise to repressors and activators of
transcription and an intragenic regulatory region (P2) that produces
repressor ICER proteins (9, 25). The CREM gene contains several exons, and the different CREM or ICER isoforms are generated by
differential splicing of the primary transcripts (Fig. 1a) (21). The interaction with DREAM is specific for repressor
CREM isoforms
and
, while other repressor isoforms (
and
)
and ICER or activator
CREM isoforms (I and II) or CREB do not block binding of DREAM to DRE sites. These results reveal for the first time
a functional difference among CREM repressor isoforms in the ability to
uncouple DREAM binding to DRE sites. Since differences in nuclear
distribution or function for the various repressor CREM isoforms have
not been shown, the functional meaning of their differential
interaction with DREAM is presently not understood. On the other hand,
since the KID and LZ domains are essential for CREM dimerization,
binding to CRE sites, and repressor function, further studies will
address the possibility that binding of DREAM to these domains can
specifically influence CRE-dependent repression through its interaction
with
CREM or
CREM.
Domain analysis and site-directed mutagenesis of the CREM proteins have
identified two LCD motifs located within the KID and the LZ domains of
CREM that are responsible for the interaction with DREAM. Absence of
the N-terminal LCD in ICER isoforms or deletion of the C-terminal LCD
in
CREM
LZ completely prevents the interaction. Moreover, the
spacing of the two LCDs seems to be critical, since activator
CREM-I
and CREB, which contain the Q2 transactivation domain between the LCDs,
do not block binding of DREAM to DRE sites. Removal of the Q2 domain in
CREM restores the interaction with DREAM. The LCD motif was first
found in nuclear coactivators (NCoA-1 and p/CIP) or corepressors (N-CoR
and SMRT) and has been implicated in protein-protein interactions with
nuclear hormone receptors or CBP (14, 19, 22, 31). Moreover,
LCDs in the N- and C-terminal ends of CBP mediate the interaction with nuclear receptors and p/CIP, respectively (31). To date, two classes of LCDs have been defined: the NR (nuclear receptor) box and
the CoRNR box, whose consensus sequences are LxxLL and L/IxxV/II, respectively, where x denotes any amino acid (19).
Interestingly, both LCDs in
CREM (ILNEL and LIEEL) have an
antiparallel orientation compared to the NR consensus box, which could
define a third type of LCD. However, the functional meaning, if any, of
the antiparallel orientation is not known. It has been shown that the
-helical structure of the LCD binds to a hydrophobic groove located
in the ligand-binding domain of the target nuclear receptor
(29), and the interaction is often regulated by the amino
acids flanking the LCD (14, 22, 29, 32). This is
particularly significant in the case of the C-terminal LCD in
CREM,
where the flanking residues, different from those in a similar
C-terminal LCD in
CREM, confer the differential ability to interact
with DREAM. Likewise, two LCD motifs in DREAM are necessary for the
interaction with
CREM. Noteworthy, the two LCDs in DREAM conform to
the CoRNR and NR boxes, respectively, and have the consensus parallel
orientation. Whether the two LCDs in CREM interact directly with the
two LCDs in DREAM is not known. Future studies using nuclear magnetic
spectroscopy to resolve the solution structure of DREAM bound and not
bound to the
CREM LCDs will clarify this point. More importantly, to our knowledge this is the first description of functional LCDs in
proteins other than nuclear receptors and their interacting coactivators and corepressors. Thus, our results increase the functional importance of LCD motifs in the context of gene expression as well as our understanding about how protein interactions are orchestrated in the nucleus.
The interaction between CREM and DREAM does not require PKA-dependent
phosphorylation of
CREM; however, the interaction is strengthened
after CREM phosphorylation. Thus, a rapid phosphorylation of
preexisting low levels of
CREM or the accumulation of
CREM protein could initiate the derepression of prodynorphin after forskolin
treatment in human neuroblastoma cells. The rapid time course of DREAM
unbinding in NB69 cells after forskolin treatment (5) could
suggest a rapid and reversible posttranslational modification, i.e.,
phosphorylation of
CREM. On the other hand, the slow time course and
the stability of prodynorphin induction in SK-NMC cells, where a
significant increase in prodynorphin mRNA becomes noticeable at 12 h and is maximum 2 days after forskolin treatment (5),
points to an increase in CREM protein levels. PKA-dependent
transcriptional activation of the CREM gene is restricted to the
intragenic P2 promoter, while P1-dependent transcription of CREM does
not respond to cAMP stimulation (10, 25). Thus, an increased
accumulation of P1-derived transcripts via increased transcription is
unlikely to occur. However, a specific effect at the
posttranscriptional level has been proposed to occur in testes during
development (11) and in supraoptic neurons following osmotic
stimulation (24), resulting in the specific accumulation of
activator or repressor CREM isoforms, respectively. The mechanism for
this could involve a selective alteration of the differential splicing
process or a differential change in the stability of P1-derived
transcripts. The selective accumulation of CREM repressor proteins in
SK-NMC and NB69 cells after forskolin treatment, with no change in the
levels of CREM activator
isoforms, supports a selective change at
the posttranscriptional level after PKA activation. However, the
molecular mechanisms that control the differential processing of CREM
transcripts and its regulation following PKA activation are not known.
The interaction between CREM and DREAM prevents binding to the DRE. The
mechanism by which
CREM disrupts DREAM binding to DRE is not known.
Apparently, the mechanism does not involve a direct competition for the
binding to DNA, since
CREM does not show any affinity for the DRE
and DREAM mutants unable to interact with CREM still bind to the DRE.
Alternatively, CREM may affect the stability of DREAM tetramers, which
are required for efficient interaction with the DRE site
(6). Experiments using a reverse two-hybrid protocol may
help to identify the domain responsible for DREAM oligomerization and
whether
CREM affects this process.
Our results showing that DREAM interacts with
/
CREM further
indicate the pleiotropic functionality of the DREAM/KchIP-3/calsenilin protein able to participate in different cellular functions through the
interaction with DNA or with various proteins, including
/
CREM, Kv4 potassium channels, and presenilin-2 (2, 4). Studies using DREAM as bait in a yeast two-hybrid screening try to identify new
targets for DREAM interaction are under way. The multifunctionality of
DREAM as well as its nuclear and cytosolic locations (6), with specific functions in each compartment, has previously been described for calmodulin, another Ca2+-binding protein. It
has been shown that calmodulin interacts with slow-desensitizing
voltage-dependent potassium channels in the cell membrane and modulates
their permeability (27), controls the activity of many
cytosolic enzymes (reviewed in references 1 and
20), and regulates transcription upon binding to
helix-loop-helix nucleoproteins (7) and CaM-dependent
kinases in the nucleus (8, 28). However, unlike DREAM,
calmodulin does not directly regulate transcription since calmodulin
binding to DNA has not been demonstrated.
Finally, as in the case of the interaction between KchIP-3/DREAM and
Kv4 potassium channels (2) or the interaction between calmodulin and neuromodulin, inducible nitric oxide synthase, or myosin
I (30, 33), the physical interaction between DREAM and
CREM is also observed in the absence of calcium binding to DREAM.
This indicates that transcriptional derepression at DRE sites can be
independently achieved through at least two distinct signaling
pathways, calcium and PKA activation. Since cellular stimulation by
hormones or activation of membrane receptors is often followed by
concomitant elevations in intracellular calcium and cAMP, both
mechanisms can cooperatively derepress DRE-dependent transcription. The
fact that binding of DREAM to DRE sites is controlled by two major
signaling pathways may suggest that DRE-dependent derepression is a
step necessary for the transcriptional activation of many genes.
Identification of DRE sites in a number of genes activated by calcium
and/or PKA activation (5, 6; unpublished results)
supports this proposal. Future studies using transgenic mice
overexpressing dominant negative mutants of DREAM, unable to respond to
calcium and/or unable to interact with
CREM, will help to elucidate
the physiological importance of the transcriptional repressor DREAM and
the functional meaning of the
CREM-DREAM interaction.
 |
ACKNOWLEDGMENTS |
Work in this laboratory is supported by grants from DGICYT, CAM,
Europharma SA, and Janssen-Cilag SA to J.R.N.
F.L. and A.M.C contributed equally to this work.
We thank N. S. Foulkes, M. Lamas, D. Martin-Zanca, and P. Sassone-Corsi for discussions, A. Aranda, M. Montminy, R. Perona, and
P. Sassone-Corsi for plasmids, and D. Campos for technical assistance.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: L115, CNB-CSIC,
Campus Cantoblanco, 28049 Madrid, Spain. Phone: 34-91-5854682. Fax: 34-91-5854506. E-mail: naranjo{at}cnb.uam.es.
 |
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