Next Article 
Molecular and Cellular Biology, February 2000, p. 741-748, Vol. 20, No. 3
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Stimulation of p53 DNA Binding by c-Abl Requires
the p53 C Terminus and Tetramerization
Ying
Nie,
Heng-Hong
Li,
Craig M.
Bula, and
Xuan
Liu*
Department of Biochemistry, University of
California, Riverside, California 92521
Received 28 June 1999/Returned for modification 29 July
1999/Accepted 21 October 1999
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ABSTRACT |
The carboxyl terminus of p53 is a target of a variety of signals
for regulation of p53 DNA binding. Growth suppressor c-Abl interacts
with p53 in response to DNA damage and overexpression of c-Abl leads to
G1 growth arrest in a p53-dependent manner. Here, we show
that c-Abl binds directly to the carboxyl-terminal regulatory domain of
p53 and that this interaction requires tetramerization of p53.
Importantly, we demonstrate that c-Abl stimulates the DNA-binding
activity of wild-type p53 but not of a carboxyl-terminally truncated
p53 (p53
363C). A deletion mutant of c-Abl that does not bind to p53
is also incapable of activating p53 DNA binding. These data suggest
that the binding to the p53 carboxyl terminus is necessary for c-Abl
stimulation. To investigate the mechanism for this activation, we have
also shown that c-Abl stabilizes the p53-DNA complex. These results led
us to hypothesize that the interaction of c-Abl with the C terminus of
p53 may stabilize the p53 tetrameric conformation, resulting in a more
stable p53-DNA complex. Interestingly, the stimulation of p53
DNA-binding by c-Abl does not require its tyrosine kinase activity,
indicating a kinase-independent function for c-Abl. Together, these
results suggest a detailed mechanism by which c-Abl activates p53
DNA-binding via the carboxyl-terminal regulatory domain and tetramerization.
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INTRODUCTION |
p53 exerts its tumor suppression
function by inducing growth arrest and apoptosis (11, 13).
The biochemical activity of p53 that is required for this relies on its
ability to bind to specific DNA sequences and to function as a
transcription factor (22). The importance of the activation
of transcription by p53 is underscored by the fact that the majority of
p53 mutations found in tumors are located within the domain required
for sequence-specific DNA binding (11, 13). Therefore, it is
clear that this activity is critical to the role of p53 in tumor suppression.
A contiguous stretch of 30 amino acid residues at the carboxyl terminus
of p53 (C terminus; amino acids 363 to 393) constitutes a domain
required for regulation of p53 DNA binding. Interference with this
domain by modification, including phosphorylation (23) and
acetylation (4, 17), or by deletion (5) has been
shown to enhance p53 DNA-binding activity. Moreover, several proteins, including Ref-1 (8) and 14-3-3 (31), have been
shown to bind to this region of p53 and enhance the DNA-binding
activity of p53. A model for this activation has been proposed in which
the C terminus of p53 interacts with the core of the molecule and in
which this interaction locks the core into a conformation that is
inactive for DNA binding (6). When this interaction is
disrupted by modification, deletion, or protein-protein interaction,
the core is able to adopt an active conformation. Despite compelling evidences for such a model, the motif on core domain that interacts with the C terminus remains to be identified. Nevertheless, these studies defined the C-terminal domain as a negative regulatory domain
that normally results in a latent, low-affinity DNA-binding form of
p53. Therefore, it follows that, upon DNA damage, signals which
regulate cell growth may also function through this domain to stimulate
p53 DNA binding.
Recently, the c-Abl tyrosine kinase has been shown to interact with p53
in response to DNA damage (10, 32, 33), and overexpression
of c-Abl leads to G1 growth arrest in a p53-dependent manner (3). In addition, c-Abl was also found to enhance the ability of p53 to activate transcription from a promoter containing a
p53 DNA-binding site in transient-transfection assays (3) and to stimulate the expression of p21 (33). Deletion of the p53-binding domain in c-Abl (
Prol, a deletion of a proline-rich domain; amino acids 793 to 1044) impairs the ability of c-Abl to
stimulate p53 transcriptional activity and to suppress growth (3). These results suggest that the p53-Abl interaction
plays an important role in regulation of p53-mediated transcription and
growth suppression. It is important to note, however, that a
kinase-inactive form of c-Abl [c-Abl(K-R)], which is defective in its
ability to suppress growth, was also found to enhance the ability of
p53 to activate transcription (3, 33), suggesting that the
tyrosine kinase activity of c-Abl is required for growth suppression
but not for transcriptional activation. These data argue that c-Abl may
stimulate p53-dependent transcription in a kinase-independent manner.
Consequently, a detailed understanding of how c-Abl stimulates
p53-dependent transcription is of significance.
In the present study, we show that c-Abl binds directly to the C
terminus of p53 and that this interaction requires a tetrameric conformation of p53. Furthermore, we demonstrate that c-Abl
significantly stimulates the DNA binding of p53 but not of a
C-terminally truncated form of p53 (p53
363C), suggesting that the
interaction with the p53 C terminus is necessary for c-Abl stimulation.
To characterize the mechanism for this activation, we have shown that
c-Abl stabilizes the p53-DNA complex. On the basis of these results, we
hypothesize that the interaction of c-Abl with the C terminus of p53
may stabilize the p53 tetrameric conformation, resulting in a more
stable p53-DNA complex. In addition, as discussed above, the tyrosine
kinase activity of c-Abl is not required for p53 transcriptional
activation. Consistent with this, we show that the stimulation of p53
DNA binding by c-Abl does not require its tyrosine kinase activity, indicating a kinase-independent function of c-Abl. Together, these observations suggest a detailed mechanism of activation via the p53
C-terminal regulatory domain and tetramerization by the growth suppressor protein c-Abl.
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MATERIALS AND METHODS |
Plasmid construction.
The p53
292 deletion mutant was
constructed by PCR amplification of amino acids 1 to 292 of p53 from
pcDNA-p53 (14) by using primers that introduce
HindIII sites at both the 5' and 3' ends. The amplified
DNA fragments were then cloned into the HindIII site of
pcDNA (Invitrogen). The p53
363 deletion mutant was constructed by
PCR amplification of amino acids 1 to 363 of p53 from pcDNA-p53 by
using primers that introduce a HindIII site at the 5'
end and an EcoRI site and a stop codon at the 3' end. The
amplified DNA fragments were then cloned into the
HindIII and EcoRI sites of pcDNA. The
internal deletion mutants of p53, p53
325-356 and p53
316-322, were
generated from pcDNA-p53 by PCR with a pair of inverted primers that
would delete the base pairs coding for the corresponding amino acids.
PCR products were then phosphorylated with T4 kinase and ligated.
Similarly, the p53 tetramerization mutant (341K344E348E355K, Tet Mut;
Stürzbecher et al. [28]), was constructed by
using primers that contained mutations at corresponding amino acid
positions. All mutant constructions were confirmed by sequencing
analysis. The luciferase reporter plasmid, pRGCE4Luc, was constructed
by cloning the BamHI-Asp718 fragment containing
RGCE4TATA from pRGCE4CAT (3) into pZLuc (27).
Purification of the c-Abl and p53 proteins.
Sf21 cells were
infected with recombinant baculoviruses expressing GST-Abl,
GST-Abl-
SH3 (a deletion construct of c-Abl lacking the SH3 domain
[19]) and GST-Abl-
C (a deletion construct of c-Abl
truncated after the catalytic domain, amino acid 532; a gift from B. Mayer, Harvard University) and lysed as described by Pendergast et al.
(21). The glutathione S-transferase (GST) fusion
proteins were then bound to glutathione-Sepharose (Pharmacia) and
eluted with buffer containing 10 mM glutathione, and purified proteins
were dialyzed in 0.1 M KCl D buffer (20 mM HEPES [pH 7.9], 20%
glycerol, 0.2 mM EDTA, 0.5 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride). To purify p53, HeLa cells were infected
with recombinant vaccinia virus expressing a hemagglutinin epitope-tagged p53 (HA-p53), and p53 was either purified from the
nuclear extract of infected cells by binding to a matrix of monoclonal
antibody (12CA5) specific for the epitope tag, followed by elution with
the epitope peptide as described by Liu and Berk (15), or
purified with a matrix of monoclonal anti-p53 antibody (421) as
described by Sheppard et al. (24). The purified proteins were analyzed by sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE). To purify p53
363, Sf21 cells were
infected with recombinant baculovirus expressing HA-p53
363 (a gift
from C. Prives, Columbia University), and p53
363 was purified with
12CA5 antibody as described above.
GST pulldown assay.
Wild-type and mutant p53 RNAs were
synthesized under conditions recommended by the manufacturer (Promega).
The mRNAs were translated in vitro for 1.5 h at 30°C in rabbit
reticulocyte lysate in the presence of [35S]methionine.
Bacterially expressed GST-Abl-C (a portion of the c-Abl carboxyl
terminus starting at amino acid 711) which binds to p53 (unpublished
data) was incubated for 60 min with glutathione-Sepharose (Pharmacia)
in lysis buffer (10% glycerol, 1% Triton X-100, 10 mM EDTA in
phosphate-buffered saline). Beads were then incubated for 60 min with
the [35S]methionine-labeled p53 mutants in incubation
buffer (20 mM HEPES [pH 7.4], 150 mM NaCl, 0.1% Triton X-100, 10%
glycerol, 1 mM PMSF, and 50 µg of ethidium bromide, 4 µg of
aprotinin, and 4 µg of leupeptin per ml) with constant mixing. After
incubation, the beads were washed three times with incubation buffer
and boiled in 15 µl of 2× SDS sample buffer. The bound proteins were
analyzed by SDS-PAGE, and 35S-labeled proteins were
visualized by autoradiography.
Immunoprecipitation assay.
Baculovirus-expressed GST-Abl was
incubated with in vitro-labeled full-length and mutant p53 in
incubation buffer (50 mM Tris-HCl [pH 8.0], 120 mM NaCl, 0.5% NP-40,
1 mM DTT, 4 µg of aprotinin per ml, 4 µg of leupeptin per ml) at
4°C for 2 h. Immunoprecipitation was performed by using anti-Abl
antibody, pEX5 (a gift from O. Witte, University of California at Los
Angeles) as described earlier (14).
EMSA.
Electrophoretic mobility shift assay (EMSA) was
carried out as described elsewhere (24). Briefly, the
ribosomal gene cluster (RGC) p53-binding site probe
(5'-AGCTTGCCTCGAGCTTGCCTGGACTTGCCTGGTCGACGC-3') was labeled
with the Klenow fragment of Escherichia coli DNA polymerase. Binding reactions contained 60 mM KCl, 12% glycerol, 5 mM
MgCl2, 1 mM EDTA, 0.2 µg of bovine serum albumin (BSA),
0.1 µg of poly(dG-dC), 200 cpm of 32P-labeled probe, and
proteins as indicated in a total volume of 12.5 µl. Reactions were
incubated at 30°C for 45 min or as indicated when association
experiments were performed and then analyzed on a 5% polyacrylamide
gel containing 0.5× TBE (0.045 mM Tris-borate, 0.045 mM sodium borate,
0.001 mM EDTA [pH 8.0]). DNA-protein complexes were visualized with a
phosphorimager by using Adobe Photoshop software. When required,
reactions were incubated in the presence of 2 mM ATP
S, a
nonhydrolyzable ATP analog, to inhibit kinase activity. When
dissociation experiments were performed, reactions were incubated for
30 min, which was immediately followed by the addition of 20× excess
of unlabeled RGC oligonucleotide to challenge the DNA-protein complex
for the indicated times.
c-Abl in vitro phosphorylation assay.
c-Abl in vitro
phosphorylation assay was performed essentially as described elsewhere
(12). Briefly, GST-Abl was incubated with
glutathione-Sepharose, and phosphorylation was carried out at 30°C in
kinase buffer (20 mM PIPES
[piperazine-N,N'-bis(2-ethanesulfonic acid); pH
7.0], 20 mM MnCl2, and 0.25 mg of BSA per ml) in the presence of [32P]ATP. When required, reactions were
incubated in the presence of 2 mM ATP
S, a nonhydrolyzable ATP
analog, to inhibit kinase activity.
Transcriptional activation assay.
The transcription activity
of p53 was measured by using pRGCE4Luc, which contains one copy of the
RGC p53 binding site cloned upstream of the adenovirus E4 TATA box and
luciferase gene. Various combinations of plasmid DNAs (see Fig. 6) were
transfected into Saos-2 cells by using calcium phosphate. The amounts
of plasmids transfected for 60-mm plates were as follows: 0.5 µg of
pRGCE4Luc, 0.2 µg of pcDNA-p53, 0.2 µg of pcDNA-p53
363, 0.2 µg
of pcDNA-p53TetMut, and 0.5 µg of pSR
MSVtkNeo-Abl (3).
All samples for luciferase assays were normalized for
-galactosidase
activity from a cotransfected control expression vector as described
earlier (14). The protein levels were determined by Western
blot analysis with the anti-p53 antibody DO-1 (Santa Cruz, Calif.).
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RESULTS |
c-Abl interacts with the C-terminal regulatory domain of p53.
It has been shown previously that c-Abl binds to p53 and activates
p53-dependent transcription. To investigate the mechanism by
which c-Abl stimulates transcription, we mapped the domains on
p53 that are required for c-Abl binding, as p53 can be regulated via
different mechanisms through protein-protein interaction at different
functional domains. A panel of N- or C-terminal truncated p53 mutants
(Fig. 1A) were in vitro translated in the
presence of [35S]methionine and incubated with
immobilized GST and GST-Abl-C which contains p53 binding domain as
reported by Goga et al. (3). After incubation, the beads
were washed, and proteins bound to the beads were analyzed by SDS-PAGE
(Fig. 1B). Deletion of the p53 transactivation domain (p53
92) had no
effect on binding to GST-Abl. In contrast, deletion of the p53 carboxyl
terminus (p53
292C) completely abrogated binding to GST-Abl-C,
suggesting the carboxyl-terminal region is required for c-Abl binding.

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FIG. 1.
The C-terminal region of p53 is required for association
with c-Abl. (A) p53 proteins containing N-terminal and C-terminal
deletions used in this study. (B and C) The p53 proteins shown in panel
A were translated in vitro and tested for binding to GST-Abl and GST.
Binding of the p53 proteins to c-Abl was measured by incubated with
immobilized GST-Abl protein, washing, SDS-PAGE, and autoradiography of
proteins retained on the beads. Binding of p53 protein to GST was
measured by incubation with immobilized GST protein in the same
condition. (D) Immunoprecipitations were carried out by using antibody
against c-Abl, pEX5, from extracts of baculovirus-infected insect cells
and the in vitro-labeled p53 proteins. Identical immunoprecipitations
were carried out by using a control anti-HA antibody, 12CA5. The
immunoprecipitates were fractionated by SDS-PAGE and analyzed by
fluorography.
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The C terminus (amino acids 293 to 393) harbors functional domains
responsible for nuclear localization (amino acids 316 to
322),
tetramerization (amino acids 325 to 356), and regulation
of p53 DNA
binding (amino acids 363 to 393). To further localize
the c-Abl binding
domain within the C terminus of p53, we next
conducted GST-Abl binding
assays with a series of p53 C-terminal
small deletion mutants
(p53

316-322, p53

325-356, and p53

363C
[Fig.
1A]) in which
each of these three functional domains was
individually removed.
Because c-Abl and p53 are both DNA binding
proteins, we included 50 µg of ethidium bromide per ml to the
binding buffer to disrupt
possible interactions mediated through
protein-DNA interactions. Figure
1C shows the GST binding results.
Deletion of the p53 nuclear
localization signal (p53

316-322)
had no effect on binding to c-Abl.
However, deletion of the regulatory
domain in p53, p53

363C
significantly disrupted its ability to
bind to c-Abl. This region has
been previously identified as an
inhibitory domain for p53 DNA binding.
Furthermore, deletion of
the tetramerization domain, p53

325-356,
also greatly reduced
binding to c-Abl. These findings show that the
interaction between
c-Abl and p53 requires the C-terminal regulatory
domain and tetramerization
domain of
p53.
To confirm the GST pulldown results, we also performed
coimmunoprecipitation experiments. As shown in Fig.
1D, binding of
baculovirus-expressed c-Abl protein to full-length p53 and
p53

316-322
was clearly observed, while binding to p53

363C and
p53

325-356
was not detected. Control immunoprecipitations with the
anti-HA
antibody, 12CA5, failed to precipitate labeled p53. These
coimmunoprecipitation
results further demonstrate that the interaction
between c-Abl
and p53 requires the C-terminal regulatory domain and
tetramerization
domain of
p53.
Tetrameric conformation is necessary for the p53-cAbl
interaction.
The tetramerization domain is important for
higher-order p53 complex formation, DNA binding (20),
phosphorylation at Ser15, Ser20, and Ser33 (25), and
degradation by Mdm2 (18), as well as for the
dominant-negative effect of mutant p53 molecules over wild-type p53
(29). The results from the GST binding experiments in Fig.
1C and the immunoprecipitation experiments in Fig. 1D led us to
hypothesize that c-Abl interacts with the regulatory domain of p53 and
that this interaction may require the tetrameric conformation of p53.
It is also possible, however, that c-Abl may interact with residues in
the tetramer domain directly. To test this, we constructed a
tetramerization impaired mutant, 341K344E348E355K (Tet
Mut), which contains four mutated residues at positions 341, 344, 348, and 355 as reported by Stürzbecher et al. (28). The ability of the mutant to interact with c-Abl was tested by using the
GST pulldown assay as described above (Fig.
2). The results showed that this mutant,
like
325-356, fails to bind to c-Abl, revealing the requirement of
the tetrameric conformation of p53 for c-Abl interaction.

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FIG. 2.
The tetrameric conformation of p53 is necessary for the
p53-Abl interaction. Radiolabeled p53 proteins were prepared by in
vitro translation and were incubated with either GST or GST-Abl. After
being washed, proteins were subjected to SDS-PAGE and analyzed by
fluorography. The tetramerization impaired mutant 341K344E348E355K (Tet
Mut) was deficient in binding to c-Abl.
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Activation of p53-DNA binding by c-Abl requires p53 C
terminus.
If the interaction of c-Abl with the regulatory domain
of p53 is of functional significance, we reasoned that c-Abl should alter the negative regulatory effect of the C terminus on p53 DNA
binding. To test this possibility, we examined the effect of c-Abl on
p53 DNA binding in an EMSA with a probe containing the p53
cis element identified in the RGC as described by Sheppard et al. (24). As expected, 50 ng of vaccinia virus-expressed epitope-tagged human p53 (one-half the amount as shown in Fig. 3B, lane
2) purified from HeLa cells with 12CA5 antibody bound to this probe and
produced a retarded p53-DNA complex (Fig.
3A, lane 2). Addition of 30 ng of
baculovirus-expressed GST-Abl (an amount of protein that corresponds
roughly to 1:1 molar ratio to p53 tetramer; Fig. 3B) resulted in a
marked stimulation of the p53 DNA binding (5- to 10-fold activation,
Fig. 3A, lanes 2 and 6). In contrast to c-Abl, the same amount of
control extract purified from mock-infected cells (C; Fig. 3A, lane 3),
purified GST protein (G; lane 4), or a combination of both (C
G; lane
5) were incapable of stimulating p53 DNA binding. Each of the extracts used in this experiment have been tested over a range of concentrations corresponding from one-half to four times the amount used in Fig. 3A.
At each of the concentrations tested, stimulation by c-Abl was observed
(data not shown). This c-Abl-stimulated p53-DNA complex could be
supershifted by the addition of anti-p53 antibody but not by the
addition of anti-Abl antibody, suggesting that c-Abl may not be part of
the p53-DNA complex (data not shown). Similar results were also
reported with other proteins, such as 421 antibody and Ref-1, which
interact with the C terminus of p53 and enhance p53 DNA binding. Two
explanations may account for this result. First, c-Abl may dissociate
from the p53-DNA complex during the electrophoresis. Second, c-Abl may
induce a conformational change of latent p53 and dissociate from p53
once bound to DNA. Nevertheless, the results suggest that c-Abl
interacts with the p53 regulatory domain to relieve its negative effect
on p53 DNA binding. The fact that stoichiometric quantities of c-Abl
stimulate p53 DNA binding supports the view that tetrameric
conformation of p53 is necessary for the stimulation.

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FIG. 3.
The C-terminal domain is required for c-Abl activation.
(A) A radiolabeled probe containing the p53-binding site from RGC was
incubated with either 50 ng of p53 purified with 12CA5 or 25 ng of p53
purified with 421 in the presence of 30 ng of control extract
("C"), GST ("G"), or GST-Abl ("A") as indicated. (B)
Results of a silver-stained SDS-PAGE are shown. Lane 1, 150 ng of
p53 363C eluted with HA peptide from a monoclonal antibody 12CA5
affinity column; lane 2, 100 ng of p53; lane 3, 300 ng of GST-Abl;
lanes 4 and 5, 100 and 50 ng of BSA, respectively. The sizes of
molecular mass standards are indicated on the left in kilodaltons. (C)
A radiolabeled probe containing the Gal4 site was incubated with either
10 ng of purified Gal4-VP16 in the presence of 10 or 20 ng of control
extract (C or 2C) or GST-Abl (A or 2A) as indicated. (D) The RGC probe
was incubated with 50 ng of 12CA5 purified p53 in the absence ( ) or
presence (+) of 30 ng of GST-Abl (A), GST-Abl- C ( C), or
GST-Abl- SH3 ( SH3) as indicated. (E) The RGC probe was incubated
with 50 ng of 12CA5 purified p53 or 10 ng of 12CA5 purified p53 363C
in the presence of GST-Abl (A, 30 ng; 2A, 60 ng) or control extract (C
and 2C) as indicated.
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To test whether c-Abl can specifically stimulate p53 DNA-binding, we
performed a gel shift assay with an unrelated transcription
factor,
Gal4-VP16, in the presence of c-Abl or a control GST extract.
As shown
in Fig.
3C, Gal4-VP16 resulted in a slowly migrating
band, the
Gal4-VP16-DNA complex (lane 1). Addition of c-Abl (lanes
3 and 5) or
the control GST extract (lanes 2 and 4) did not have
any effect on DNA
binding, suggesting that the c-Abl interaction
plays a role in the
activation of p53 DNA
binding.
If this result is correct, a construct of c-Abl, that lacks the p53
binding domain (c-Abl-

C), should not activate p53 DNA
binding,
whereas another construct of c-Abl that binds to p53
but lacks SH3
domain (c-Abl-

SH3) should activate p53 DNA binding
under our assay
condition. We tested this hypothesis by comparing
the abilities of
wild-type c-Abl, c-Abl-

SH3, and c-Abl-

C to
stimulate p53 DNA
binding (Fig.
3D). The c-Abl-

SH3 mutant continued
to activate p53
DNA binding, whereas c-Abl-

C was significantly
impaired in its
ability to stimulate p53 DNA binding. These findings
demonstrate a
correlation between the ability to bind p53 and
to activate p53 DNA
binding. Consequently, c-Abl interaction is
required for activation of
p53 DNA
binding.
To further test this hypothesis, we performed a gel shift assay with
the C-terminal truncated form of p53 (

363C) in the presence
of c-Abl
or a control GST extract (Fig.
3E) since c-Abl should
not affect the
DNA binding of

363C. As expected, p53 resulted
in a slowly migrating
band, the p53-DNA complex (lane 2), and
addition of c-Abl significantly
activated the p53 DNA binding
(lane 3). In contrast,

363C bound to
DNA more efficiently than
p53 (compare lane 4 to lane 2). Addition of
c-Abl to

363C, however,
did not have any effect on DNA binding
(lanes 5 and 7). The striking
difference in activation of p53 DNA
binding by c-Abl supports
our conclusion that c-Abl interacts with the
regulatory domain
to diminish its negative regulatory effect on p53 DNA
binding.
It has been demonstrated previously that 421 antibody binds to the
regulatory domain (amino acids 372 to 382) and activates
p53 in a
manner similar to that observed with c-Abl. Therefore,
we tested
whether c-Abl can stimulate p53 purified with 421 antibody.
Surprisingly, 421-purified p53 can be activated by c-Abl to a
similar
extent as 12CA5-purified p53 (Fig.
3A, lanes 7 to 9).
Several
explanations may account for this result. c-Abl and 421
antibody may
interact differently with the negative regulatory
domain and affect p53
DNA binding independently. Support for this
assumption comes from the
interaction data in that c-Abl binding,
unlike 421 antibody, requires
the tetrameric conformation of p53
(Fig.
2). Alternatively, c-Abl may
alter the conformation of the
regulatory domain more efficiently,
resulting in a further stimulation
of DNA binding of 421-purified
p53.
c-Abl activates p53 DNA binding in a kinase-independent
manner.
Because a kinase-inactive form of c-Abl [c-Abl(K-R)] has
been reported to bind p53 and to enhance the ability of p53 to activate transcription (3, 33), we considered that the kinase
activity of c-Abl might not be required for the activation of p53 DNA
binding. We therefore examined the effect of ATP
S, a nonhydrolyzable
ATP analog on the ability of c-Abl to stimulate p53 DNA binding. Under our assay condition, ATP
S can inhibit c-Abl kinase activity in both
the autophosphorylation assay (Fig. 4B)
and the GST-Crk phosphorylation assay (data not shown). Figure 4A shows
that addition of 2 mM ATP
S did not have any effect on the activation
of p53 DNA binding by c-Abl (compare lane 4 to lane 2). As a control,
ATP
S was also added to p53 DNA binding reaction without c-Abl, and
no effect on p53 DNA binding was observed (compare lane 7 to lane 5).
These results suggest that the activation of p53 DNA binding by c-Abl is kinase independent. These results are consistent with the previous observation that c-Abl enhances the ability of p53 to activate transcription in a kinase-independent manner and suggest that c-Abl
activation of p53 DNA binding occurs independent of its function as a
protein tyrosine kinase.

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FIG. 4.
c-Abl stimulates p53 DNA binding in an ATP-independent
manner. (A) A radiolabeled probe containing the p53-binding site from
RGC was incubated with 50 ng of 12CA5 purified p53 with (+) or without
( ) 30 ng of GST-Abl and with or without 2 mM ATP S or 2 mMATP as
indicated. (B) c-Abl phosphorylation was carried out with or without 2 mM ATP S or 2 mMATP as shown. The phosphorylated proteins were
fractionated by SDS-PAGE and analyzed by autoradiography.
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Interaction with c-Abl stabilizes the p53-DNA complex.
The
activation of p53 DNA binding by c-Abl could result from increasing the
rate of p53-DNA complex formation or by decreasing the rate at which
p53 dissociates from the DNA.
To determine whether c-Abl affects the rate of p53-DNA complex
formation, p53 was incubated with the RGC probe in the presence
of
either c-Abl or the GST control. At different time points (0,
2, 5, 10, 20, 40, and 60 min) after mixing, aliquots of the reaction
mixture were
loaded on a running gel (Fig.
5A). The
results show
that p53 gel shift bands were observed at maximal levels 2 min
after incubation, in the presence or absence of c-Abl, suggesting
that formation of the p53-DNA complex may not be affected by the
presence of c-Abl. To exclude the possibility that a small difference
in the association rate of p53-DNA, in the presence or absence
of
c-Abl, may exist, we performed the same gel shift experiments
at 4°C
or with a decreasing amount of p53. In either case, no
difference in
the association rate of p53-DNA complex could be
detected (data not
shown). Of note, a decreased level of p53-DNA
complex was observed
after 40 min of incubation without c-Abl,
but not with c-Abl,
indicating that c-Abl may stabilize p53-DNA
complex. Western blot
analysis was performed (Fig.
5B) to ensure
that p53 is equally stable
during the time course.

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|
FIG. 5.
c-Abl prevents the dissociation of the p53-DNA complex.
(A) Determination of the association rate of the p53-DNA complex in the
presence or absence of c-Abl. Binding reactions were performed as
described, and samples were loaded on a running gel at different time
points. (B) Western blot analysis of p53 protein levels at different
time points. (C) Determination of the dissociation rate of the p53-DNA
complex in the presence or absence of c-Abl. At equilibrum, DNA-binding
reaction mixtures were challenged by addition of a 20× excess of
unlabeled RGC competitor, and samples were removed and loaded on a
running gel at various time points. (D) Determination of the
dissociation rate of the 363-DNA complex. (E) The intensity of the
bands representing the p53-DNA complex in panels C and D was
quantitated with a phosphorimager and plotted as a percentage of the
intensity at equilibrum.
|
|
To test the hypothesis that c-Abl may stabilize p53-DNA complex, we
next determined whether c-Abl decreased the dissociation
rate of a
preformed p53-DNA complex. For this experiment, purified
p53, in the
presence of either c-Abl or the GST control, was incubated
with the RGC
probe for 30 min, and then the formed complexes were
challenged with a
20-fold molar excess of unlabeled RGC oligonucleotide
as a competitor.
Aliquots of the reaction mixture were loaded
on a running gel at 0, 5, 10, 20, 40, and 60 min after the addition
of the competitor DNA (Fig.
5C). At the end of the electrophoresis,
the amount of DNA shifted was
quantitated by phosphorimager analysis.
Figure
5E shows a plot of the
data from four independent experiments,
where 100% represented the
amount of p53-DNA complex formed before
the addition of unlabeled
competitor (0 min). The data clearly
show that c-Abl stabilizes the p53
DNA
binding.
If this result is correct, we reasoned that p53

363C should also
stabilize the p53-DNA complex by decreasing the dissociation
rate of
the p53-DNA complex. For this experiment, purified

363C
was
incubated with the RGC probe for 30 min, and then the formed
complexes were challenged with unlabeled RGC oligonucleotide.
The
results demonstrated that p53

363C also stabilizes the p53
DNA-binding (Fig.
5D and
E).
The C terminus and tetramerization of p53 are responsible for
activation of p53-dependent transcription by c-Abl.
Our results
showing that c-Abl interacts with the C-terminal regulatory domain in
the tetrameric form of p53 to activate DNA binding prompted us to
determine the effect of c-Abl on the ability of the tetramerization
impaired p53 (Tet Mut) and the C-terminally truncated p53 (
363C) to
activate transcription in vivo. Toward this end, we performed
transient-transfection experiments from a minimal promoter containing
one p53 binding site (RGC) and the E4 TATA box (RGCE4) in Saos-2 cells.
Figure 6A summarizes the results from
three independent experiments in which RGCE4 was cotransfected with
expression vectors for p53,
363C, or Tet Mut in the presence or
absence of c-Abl, and luciferase was measured after adjustments were
made for the difference in transfection efficiencies. As expected,
addition of c-Abl to full-length p53 resulted in nearly threefold
enhancement of activation. In contrast, addition of c-Abl to
363C
and Tet Mut had no detectable effect on the transcription. The
enhancement by c-Abl is p53 dependent since c-Abl alone over a wide
range had no effect on the RGCE4 promoter (data not shown). Western
blot analysis was performed to ensure that
363C mutant is expressed
in equal levels compared to wild-type p53, and c-Abl has no effect on
the expression of the transfected p53 (Fig. 6B). Tet Mut was expressed
at higher levels, a finding which is consistent with the observation
that tetramerization is required for p53 to be efficiently degradated (18). These findings support our conclusion that the C
terminus and tetramerization of p53 are responsible for stimulation of p53-dependent transcription by c-Abl.

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|
FIG. 6.
Stimulation of p53 transcriptional activity by c-Abl
requires the C terminus and tetramerization of p53. (A) Saos-2 cells
were transfected with the plasmid combination listed below the figure.
At 40 h after transfection, the luciferase activity was measured
after normalization to -galactosidase activity and expressed as the
fold activation relative to the level seen with the reporter
alone (lane 1). The mean and standard deviations from three
independent experiments are presented. (B) The transfected cells were
lysed, and the p53 protein levels were determined by Western blot
analysis with DO-1 anti-p53 antibody.
|
|
 |
DISCUSSION |
A mechanism for c-Abl activation of p53-dependent
transcription.
Although it is known that c-Abl stimulates
p53-dependent transcription, a function required for c-Abl growth
suppressor activity (3), the molecular mechanisms by which
this occurs remain elusive. The results reported here show that c-Abl
interacts with the C-terminal regulatory domain of tetrameric form of
p53 and functions to activate the p53 DNA binding. In an effort to
assess the mechanism of c-Abl activation, we also show that c-Abl
activates p53 DNA binding by stabilizing the p53-DNA complex.
Collectively, these results suggest a model for c-Abl activation. In
this model c-Abl activates latent p53 by relieving the C-terminal
inhibitory domain of p53 and enhances p53 DNA binding by forming a
stable p53-DNA complex. Support for this mechanism also comes from the
correlation between the effect of c-Abl mutations on the interaction
with p53 and on the activation of p53 DNA binding. These results
indicate that c-Abl contributes to p53 transactivation by functioning
as a stimulator of p53 DNA binding.
c-Abl functions as a p53 DNA-binding stimulator in a manner different
from several other stimulator proteins which also activate
DNA binding
by relieving the C-terminal inhibitory effect. Examples
include p300,
which acetylates lysine residues at the C terminus
and activates latent
p53 (
4), and Ref-1, which activates p53
DNA binding via the
C-terminal domain in a redox-dependent manner
(
8). c-Abl is
distinct from these proteins in that it did not
appear to covalently
modify p53 or to rely on the redox state
of p53. It may be similar in
this regard to 421 antibody activation,
wherein the antibody binds to
the C-terminal domain and relieves
its negative effect on p53 DNA
binding. However, 421 antibody
recognizes both tetrameric and monomeric
forms of p53, indicating
a conformation-independent binding. In the
case of c-Abl, the
specific binding of c-Abl requires p53 to be in a
tetrameric form.
What remains to be determined is the significance of
c-Abl binding
the p53 tetramer but not the
monomer.
Our data suggest that c-Abl stimulates p53-mediated transcription, at
least in part, by activation of p53 DNA binding. Of
note, two recent
studies have shown that overexpression of c-Abl
also induces p53
accumulation (
33), probably via the neutralization
of the
inhibitory effect of Mdm2 by c-Abl (
26). These data suggest
that the c-Abl-p53 interaction induces a conformational change
which
may dissociate p53 from Mdm2. p300 has been shown to activate
p53 via
two different mechanisms, activation of p53 DNA binding
(
4,
17) and stabilization of the p53 protein (
34).
Therefore,
as with the activation of p53 by p300, our data together
with
the studies cited above suggest that c-Abl may stimulate
p53-mediated
transcription by more than one mechanism, i.e., enhanced
DNA binding
as well as protein
accumulation.
Proposed model for the stabilization of the p53-DNA complex by
c-Abl.
We have shown that c-Abl stabilizes the p53-DNA complex. In
order to explain this increased stability, we speculate that the interaction of c-Abl with the C terminus of p53 may stabilize the p53
tetrameric conformation. There are several reasons that led us to
believe this is the case. Our results show that c-Abl interacts with
the tetrameric form of p53 but not with the monomeric form, suggesting
that multiple contacts between c-Abl and p53 may be required for the
interaction. These multiple contacts, in principle, could induce a
stable tetrameric form of p53, resulting in a more stable protein-DNA
complex (20). Of note, it has been shown that the p53
tetramer could bind DNA via one dimer interacting with one half-site,
but binding was stabilized significantly if the second dimer of a
tetramer simultaneously bound DNA beside the first dimer, suggesting
that cooperative interdimer interactions stabilize tetramer binding to
DNA (20). Similar studies were also done with nuclear
receptors and showed that dimerization of nuclear receptors stabilizes
the binding of the receptors to DNA (2). In the absence of
the dimerization domain, DNA-binding domain (DBD) monomers dissociate
from the DNA very rapidly. In contrast, a dimer of the full-length
receptor was found to dissociated from the DNA very slowly. These
findings were explained in a one-step-two-step model by Jiang et al.
(9) in which the DBD monomers dissociated from the DNA one
at a time in two energetically favorable steps, whereas the full-length
receptor dissociated from the DNA in a single step process. This
one-step dissociation was considered to be energetically unfavorable,
since the contacts between two DBD monomers and DNA had to be broken at
the same time. This model could also apply to other DNA-binding
proteins such as p53. In this case, the stabilization of DNA binding
would be more effective since p53 exists as a tetramer.
It is tempting to speculate that our hypothesis may also explain why
the C-terminal domain inhibits p53 DNA binding. The C-terminal
regulatory domain was proposed to interact with a motif in the
core of
the p53 tetramer, thereby forming a conformationally inactive
complex
(
6). Despite compelling evidences for such a model,
the
motif on core domain that interacts with the C terminus remains
to be
identified. In addition, the increased association rate
of p53 and DNA
after disruption of the C-terminal inhibition has
not been observed. An
alternative explanation, therefore, is that
the C-terminal domain may
interfere with the tetramerization of
p53, resulting in a less-stable
p53-DNA complex. Supporting this
assumption are the experimental
evidences that, first, the association
rate of p53 and DNA is
unaffected by c-Abl (Fig.
5A) and, second,
p53

363C also stabilizes
the p53-DNA complex by decreasing the
dissociation rate of the p53-DNA
complex (Fig.
5D and E) but not
by increasing the association rate
(data not shown). The fact
that the C-terminal domain is closely
located next to the tetramerization
domain also makes this alternative
model physically possible.
Further studies of the role of the
C-terminal regulatory domain
in tetramerization will be required to
distinguish between these
possibilities.
A kinase-independent activity for c-Abl.
The c-Abl protein is
a nuclear tyrosine kinase. However, c-Abl-p53 complexes are detected in
cells expressing either wild-type or the kinase-inactive c-Abl(K-R) in
response to ionizing radiation (33). Furthermore, the kinase
activity of c-Abl is not required for transcriptional activation by p53
in transient-transfection assays from a promoter containing p53
DNA-binding sites (3). Consistent with these results, our
data reveal that the c-Abl kinase activity is not required for the
activation of p53 DNA binding. On the basis of these observations, we
propose a kinase-independent activity for c-Abl: activation of p53 DNA
binding. Several lines of evidence have lent support to this activity.
First, although a deletion of the c-Abl SH3 domain increases
Abl-mediated tyrosine phosphorylation in vivo (1, 7, 30),
similar effects on transactivation (3) by wild-type Abl and
Abl-
SH3 (a deletion of c-Abl lacking SH3 domain) were observed.
Second, the amounts by which the kinase-inactive c-Abl(K-R) stabilizes
p53 were similar to the stabilization by wild-type c-Abl
(26), suggesting that c-Abl functions to induce a possible
conformation change in p53 in a non-kinase-dependent manner. Finally,
the overexpression of both wild-type c-Abl and c-Abl(K-R) enhances the
expression of endogenous p21 (33).
By comparison to p53, c-Abl has been shown to interact and
phosphorylate p73, a structural and functional homologue of p53.
Importantly, the c-Abl tyrosine kinase activity is required for
the
stimulation of p73-mediated transactivation and apoptosis
(
35). Therefore, together with our data, these findings
suggest
that c-Abl regulates p53 family in response to DNA damage
through
different
mechanisms.
A link between DNA damage and activation of p53 via the C-terminal
domain.
c-Abl contributes to radiation-induced G1
arrest via a p53-dependent mechanism (33), indicating that
p53 lies in a pathway downstream from c-Abl. We demonstrate that c-Abl
binds to the C terminus of p53 and stimulates p53 DNA binding. These
findings directly link c-Abl to activation of p53 DNA binding via the
C-terminal domain in response to DNA damage. Interestingly, a recent
study has shown that irradiation leads to dephosphorylation of Ser376, resulting in an association of 14-3-3 proteins with p53 via the C-terminal domain which, in turn, enhanced the affinity of p53 for
sequence-specific DNA (31). This observation suggests that p53 lies in a pathway downstream from the 14-3-3 protein in response to
DNA damage. Our data, together with this finding, support the view that
there are multiple molecular pathways that signal DNA damage
(16) and activate p53 via the C-terminal domain. Although it
is clear that the interaction of p53 with c-Abl is DNA damage inducible, it remains to be determined whether Ser376 dephosphorylation contributes to such a c-Abl-p53 association.
Transient-transfection assays showed a significant stimulatory effect
of c-Abl on the ability of cotransfected p53 to activate
transactivation. The observation that c-Abl did not stimulate
p53

363C and Tet Mut in these assays supports the assumption that
the
C-terminal domain and tetramerization of p53 are likely targeted
by DNA
damage signaling pathways in vivo. Definitive evidence
for a loss of
c-Abl response in cells expressing p53

363C and
Tet Mut will be
required to validate such a model. In addition,
further analysis of the
effects of c-Abl on the promoters of natural
p53 response genes, such
as p21, in such cells should help to
clarify this
issue.
The function of p53 in the DNA damage response is clearly important to
the proper functioning of many cell types. In this
study, we have
provided an example of activation of p53 DNA binding
via the C-terminal
regulatory domain and tetramerization by a
growth suppressor protein,
c-Abl. Our finding further supports
the view that the C terminus of p53
is a target for stimulation
of p53 DNA binding in response to DNA
damage and suggests for
the first time that tetramerization is required
for this
stimulation.
 |
ACKNOWLEDGMENTS |
We are very grateful to B. Mayer (Harvard University) for
providing baculoviruses expressing GST-cAbl, GST-cAbl-
SH3, and in
particular GST-cAbl-
C prior to publication, to C. Prives (Columbia University) for baculovirus expressing p53
363C, and to O. N. Witte (UCLA) for anti-Abl antibody. We thank F. Sladek, A. Merino, and
S. Corneillie for many helpful discussions and valuable comments on the manuscript.
This work was supported by grants CA75180 (X.L.) from the National
Cancer Institute and DAMD17-96-6076 (X.L.) from the U.S. Army Breast
Cancer Research Program.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biochemistry, University of California, Riverside, CA 92521. Phone:
(909) 787-4350. Fax: (909) 787-4434. E-mail:
xuan.liu{at}ucr.edu.
 |
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Molecular and Cellular Biology, February 2000, p. 741-748, Vol. 20, No. 3
0270-7306/00/$04.00+0
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