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Molecular and Cellular Biology, February 2000, p. 919-928, Vol. 20, No. 3
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Mutations in Host Cell Factor 1 Separate Its Role
in Cell Proliferation from Recruitment of VP16 and LZIP
Shahana S.
Mahajan and
Angus C.
Wilson*
Department of Microbiology and Kaplan
Comprehensive Cancer Center, New York University School of
Medicine, New York, New York 10016
Received 8 September 1999/Returned for modification 13 October
1999/Accepted 1 November 1999
 |
ABSTRACT |
Host cell factor 1 (HCF-1) is a nuclear protein required for
progression through G1 phase of the cell cycle and, via its
association with VP16, transcriptional activation of the herpes simplex
virus immediate-early genes. Both functions require a six-bladed
-propeller domain encoded by residues 1 to 380 of HCF-1 as well as
an additional amino-terminal region. The
-propeller domain is well
conserved in HCF homologues, consistent with a critical cellular
function. To date, the only known cellular target of the
-propeller
is a bZIP transcription factor known as LZIP or Luman. Whether the interaction between HCF-1 and LZIP is required for cell proliferation remains to be determined. In this study, we used directed mutations to
show that all six blades of the HCF-1
-propeller contribute to
VP16-induced complex assembly, association with LZIP, and cell cycle
progression. Although LZIP and VP16 share a common tetrapeptide HCF-binding motif, our results reveal profound differences in their
interaction with HCF-1. Importantly, with several of the mutants we
observe a poor correlation between the ability to associate with LZIP
and promote cell proliferation in the context of the full HCF-1 amino
terminus, arguing that the HCF-1
-propeller domain must target other
cellular transcription factors in order to contribute to G1 progression.
 |
INTRODUCTION |
The transcription of eukaryotic
genes is predominantly controlled through the assembly of transcription
factors into macromolecular complexes on cis-acting DNA
target sequences. The frequency with which multicomponent regulatory
complexes (sometimes referred to as enhancesomes) are used predicts the
existence of specialized proteins that regulate gene expression by
coordinating the recruitment and ordered assembly of the various
components into an active complex. One example of this new class of
regulatory protein is host cell factor 1 (HCF-1; also known as C1
factor). First identified through its role in assembly of the
VP16-induced complex (VIC), a multiprotein-DNA complex that coordinates
the activation of the herpes simplex virus immediate-early genes
(31, 41), HCF-1 is likely to perform a similar function in
the assembly of cellular transcription complexes.
VP16 (also known as Vmw65 or
TIF) is a potent transcriptional
activator encoded by herpes simplex virus and packaged into the
infective virion particle. Once released into the newly infected cell,
VP16 binds directly to HCF-1, allowing translocation to the nucleus and
interaction with the POU domain transcription factor Oct-1 and a DNA
sequence element known as the TAATGARAT motif that is found upstream of
each viral immediate-early gene. VIC assembly is highly selective and
is achieved through a combination of specific protein-protein and
protein-DNA contacts (12, 14, 23, 32, 39, 44). Both HCF-1
and Oct-1 belong to multiprotein families, and VP16 has evolved
mechanisms to recruit single members of each family. VP16 can
distinguish Oct-1 from other POU proteins, including the very similar
Oct-2, through recognition of differences on the solvent-exposed
surface of the POU homeodomain (23, 32). Similarly, VP16
preferentially targets HCF-1 rather the closely related protein HCF-2
through recognition of a limited number of amino acid differences in
blades 5 and 6 of the
-propeller domain (14). Once the
VIC is formed, the carboxy-terminal activation domain of VP16 activates
transcription by recruiting coactivators (42) and by making
direct contacts with components of the general transcription machinery
(16, 43).
The function of HCF-1 is poorly understood but is likely to yield
information of general significance. HCF-1 comprises a series of
polypeptides derived from a >2,000-amino-acid precursor through proteolytic processing (19, 48). Cleavage occurs at a series of six centrally located 26-amino-acid repeats (called
HCFPRO repeats) producing multiple amino- and
carboxy-terminal fragments that remain tightly, but noncovalently,
associated following cleavage (49). VP16 interacts with a
discrete amino-terminal domain (HCFVIC) composed of six
kelch-like repeats that fold into a six-bladed
-propeller. The HCF-1
-propeller is in itself sufficient for VIC assembly in vitro and in
vivo (13, 34, 47), although the carboxy terminus of HCF-1
contributes to the efficiency of complex formation and to translocation
of VP16 to the nucleus (21, 22).
HCF-1 is expressed in all mammalian cell types and is essential for
cell proliferation (reviewed in reference 14). The
role in cell cycle progression was demonstrated through studies of tsBN67 cells, a temperature-sensitive hamster cell line that
undergoes a G0/G1 arrest at the nonpermissive
temperature (39.5°C) (8). The cell cycle arrest is
reversible, and cells will reenter the proliferative cycle if returned
to the permissive temperature (33.5°C). The tsBN67
phenotype is due to a single proline-to-serine change in the
-propeller domain of HCF-1 (8, 47). The mutation apparently does not alter the stability or processing of HCF-1 but
prevents association with VP16. The fact that a single mutation in
HCF-1 could disrupt both known functions (transactivation by VP16 and
cell proliferation) led to the idea that VP16 may have copied a
preexisting interaction between HCF-1 and an unknown cellular protein
involved in G1 progression (5, 8, 47). This
hypothesis is supported by the strong conservation of the amino acid
sequence of the
-propeller during evolution (14, 27) and
the fact that HCF from invertebrates such as insects and nematodes can
readily support VIC formation (18, 27, 46).
To date, the only known cellular target of the HCF-1
-propeller is a
ubiquitous basic leucine zipper transcription factor known as LZIP or
Luman (5, 28). Mammalian LZIP and a related protein from
Drosophila, called dCREB-A or BBF-2, interacts with HCF-1
through a short tetrapeptide motif known as the HCF-binding motif (HBM)
that is also found in VP16 (5, 29). The interaction can be
disrupted by point mutations in the HBM (5, 9, 29) or by
competition with short peptides derived from VP16 that span the motif
(10, 34, 50). Both LZIP and dCREB-A function as potent
transcriptional activators (1, 29, 35), indicating that
HCF-1 is likely to be involved in the regulation of cellular as well as
viral transcription.
In this study, we used mutagenesis to define the surfaces on the HCF-1
-propeller involved in the association with VP16 and LZIP. Our
results show that all six blades of the
-propeller contribute to
recognition of the relatively simple HBM. Surprisingly, we find major
differences between LZIP and VP16 in terms of their sensitivities to
individual HCF-1 mutants, implying a significant contribution by the
nonconserved sequences flanking the HBM. In general, mutations that
disrupt VIC assembly affect the HCF-1-VP16 interaction; however, we
identify a mutation in the sixth blade of the
-propeller that
prevents complex formation without disrupting association with VP16.
Last, our mutational analysis reveals a poor correlation between
association with LZIP and ability to complement the tsBN67
proliferation defect, arguing that the HCF-1-LZIP interaction
may not be required for G1 progression.
 |
MATERIALS AND METHODS |
Plasmid construction and site-directed mutagenesis.
Mammalian expression vectors encoding the wild-type and P134S mutant
-propeller domains of HCF-1 (residues 1 to 380;
pCGNHCF-1N380 and pCGNHCF-1N380P134S,
respectively), the amino terminus of HCF-1 (residues 1 to 902;
pCGNHCF-1N902), VP16 (residues 5 to 411; pCGTVP16
C), and
(residues 1 to 154; pCGTLZIP) have been described previously (14,
47).
Mutations were generated by oligonucleotide-directed mutagenesis
following the Altered-Sites (Promega Inc.) or Quick-change (Stratagene
Inc.) protocol. Where possible, a diagnostic restriction site was
included to serve as a marker for screening the mutants. The sequence
changes of the mutants described in this study are as follows: P30S,
TGagcCGGC
(NgoMI/NaeI+); P79S,
TTagCCCgGG
(SmaI/XmaI+); P197S,
TCtTAagcC
(AflII+); P252S,
CaagctTaC
(HindIII+); P319S,
TCtCtCGaGC
(XhoI+); C82D,
TCGTcgacGA
(SalI+); R137D,
CagatCTCG
(BglII+); R200D,
ACCtCcGGAc
(BspEI+); R255A,
TCCggaCA
(BspEI+); R322D,
CCCGgGCTgacGC
(SmaI/XmaI+); K105D,
GGgAcTAtAGC
(SfcI+); R228D,
GcgacCTaGG
(PstI
/AvrII+);
RK344A2, ACgctgcaG
(PstI+); EWK289A3,
GctgcagcaTG
(PstI+); and S338A,
GgccGGcCG
(NgoMI/NaeI+). Uppercase
letters represent wild-type sequences, and lowercase letters represent
mutations. Missense codons are indicated with bold typeface. Diagnostic
restriction sites are underlined and identified in parentheses;
superscript plus and minus signs indicate sites generated and sites
destroyed, respectively. Each mutation was verified by DNA sequence analysis.
Transfections, coimmunoprecipitations, immunoblotting, and
electrophoretic mobility shift assays.
Human 293T cells were
transfected with Lipofectamine (Life Technologies), using 20 µl lipid
reagent per 6-cm-diameter dish. Whole cell and nuclear extracts were
prepared after 24 h by lysing cells in high-salt lysis buffer (420 mM KCl, 10 mM Tris-HCl [pH 7.9], 5% glycerol, 0.25% NP-40, 0.2 mM
EDTA, 0.5 mM phenylmethylsulfonyl fluoride, 0.2 mM sodium vanadate, 50 µM sodium fluoride, 1 mM dithiothreitol). Nuclei were extracted at
4°C for 30 min and removed by centrifugation. For
immunoprecipitations, 100 µl of extract was incubated with 2.5 µl
of antihemagglutinin (
HA) antibody (12CA5)-coupled protein G-agarose
beads at 4°C for 1 h. The beads were washed four times in 1 ml
of wash buffer (200 mM KCl, 10 mM Tris-HCl [pH 7.9], 5% glycerol,
0.5 mM EDTA) before separation by sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis (PAGE). Immunoblotting was
performed by semidry transfer and detected by enhanced
chemiluminescence (SuperSignal; Pierce). The
HA antibody and
T7
antibody (Novagen) were diluted 1:5,000 and 1:10,000, respectively.
For cell-free expression, HCF-1-encoding fragments were shuffled into
pNCITE, a derivative of pCITE2a
+ that includes the HA
epitope at the amino terminus of the expressed
protein. Full-length
Oct-1 was expressed by using a non-epitope-tagged
version of pCITE
(gift of Ethan Ford and Nouria Hernandez, Cold
Spring Harbor
Laboratory). In vitro transcription and translation
reactions were
performed in the presence of [
35S]methionine, using the
TNT Quick Coupled transcription-translation
system (Promega, Inc.).
HA-tagged HCF-1 polypeptides were radiolabeled
to a lower specific
activity by including a 20-fold excess of
unlabeled methionine in the
translation reaction. Coimmunoprecipitation
assays with in
vitro-translated proteins were performed as described
above except that
the antibody beads were pretreated with unprogrammed
lysate to reduce
nonspecific binding by Oct-1. The binding reactions
and washes were
adjusted to 100 mM KCl and 0.05% NP-40. Electrophoretic
mobility shift
assays were performed as described previously (
40,
41);
complex formation was performed at 30°C, and electrophoresis
was
carried out at room temperature. Luciferase reporter assays
were
performed under standard conditions. Extracts were prepared
by using a
commercial lysis buffer (Promega, Inc.) and measured
with an LB9507
luminometer (EG&G Berthold, Inc.).
Complementation of tsBN67 cells.
Subconfluent
tsBN67 cells were incubated at 33.5°C for 20 h and
transfected with 1 µg of each HCF-1 expression vector together with
0.5 µg of pSV2neo, using Lipofectamine (Life Technologies). The DNA
mixes were sterilized by ethanol precipitation prior to transfection.
After 2 days at 33.5°C, transfected cells were split into two
15-cm-diameter dishes, and Geneticin (0.8 mg/ml) was included in the
medium to select for stable transfectants. Following 1.5 to 2 weeks of
incubation at 39.5°C, the plates were stained with crystal violet and
colonies of proliferating cells were counted. In some cases,
complementation was confirmed by subcloning individual colonies.
 |
RESULTS |
VP16 associates with an amino-terminal domain of HCF-1, called the
HCFVIC domain (13, 22, 34, 47) (Fig.
1A). Spanning approximately 380 residues,
the HCFVIC domain is comprised of six degenerate sequence
repeats that were first identified in the Drosophila
actin-associated protein Kelch and are referred to as
HCFKEL1 to HCFKEL6 (47). A sequence
alignment of the HCFVIC domains from HCF-1, HCF-2, and
Caenorhabditis elegans HCF is shown in Fig. 1B, illustrating
the extensive sequence conservation across the domain (14,
27). By analogy to kelch repeat proteins of known structure, the
HCFKEL repeats are predicted to fold into four-stranded
-sheets that stack pseudosymmetrically around a central axis,
forming a structure known as a
-propeller (2). This
compact arrangement is decorated by loops of variable length clustered
on one surface (36, 37, 45). We follow a standard nomenclature for mutants; for example, P134S indicates proline 134 changed to serine.

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FIG. 1.
(A) Primary structure of HCF-1. The amino-terminal
-propeller (HCFVIC) domain is shown as a shaded box. The
eight HCFPRO repeats are located near the center of the
polypeptide and represented by filled (functional) and open
(nonfunctional) arrowheads. The first 902 residues of HCF-1 comprising
the -propeller, amino-terminal self-association domain, and poorly
defined basic region are required for complementation of the
tsBN67 cell proliferation defect. (B) Alignment of the six
kelch repeats that make up the -propeller domain of HCF-1 (h1),
HCF-2 (h2) and C. elegans HCF (ce) (14, 27). The
predicted -strands in each repeat unit are boxed. Residues that are
conserved in two or more HCF proteins are shown in bold. The residues
that have been mutated in this study are numbered and highlighted.
 , amino acids.
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All six kelch repeats contribute to VIC formation.
The
tsBN67 cell cycle arrest phenotype results from a single
proline-to-serine substitution at position 134 in the fourth residue in
HCFKEL3 (Fig. 1B). In addition to blocking G1
progression, this single mutation abolishes the interaction of HCF-1
with VP16 and LZIP but does not alter the overall stability or folding
of the
-propeller domain itself (5, 8, 47). Remarkably, there is a proline residue at the equivalent position in each of the
six kelch repeats of HCF-1, HCF-2 and C. elegans HCF
(14, 27, 47), suggesting a critical role in domain function.
By analogy to other
-propeller domains, the universally conserved proline lies within a loop connecting the fourth strand (
4) of one
-sheet (or kelch repeat unit) to the first strand (
1) on the next
sheet. These 4-1 loops are positioned on the "top" surface of the
structure, lining the central cavity, and are thus ideally positioned
to contribute to protein-protein interactions.
To address the significance of this conserved proline, we generated
serine substitutions in each of the remaining kelch repeats
of HCF-1
and assayed the resulting mutant HCF
VIC domains for
association
with VP16. Figure
2 shows the
results of this analysis. Human
293T cells were cotransfected with
expression plasmids encoding
wild-type or mutant HCF-1

-propeller
domains, together with increasing
amounts of VP16 expression plasmid.
Whole cell extracts were prepared
from the transfected cells and mixed
with a labeled DNA probe
containing a VP16-responsive TAATGARAT element
derived from the
ICP0 promoter together with
Escherichia
coli-expressed Oct-1 POU
domain protein. Wild-type HCF-1
(HCF-1
N380 [Fig.
2A, lanes 4 and
5]) gave rise to a
strong VIC (labeled mini-VIC), while the P134S
mutant failed to support
complex formation (lanes 10 and 11) as
we have reported previously
(
14,
47). The VIC incorporating
the recombinant HCF-1

-propeller (mini-VIC) has a significantly
faster gel mobility than
the complex produced by full-length HCF-1
present in the extract
(endogenous VIC). In addition to P134S,
substitutions P30S (lanes 6 and
7), P79S (lanes 8 and 9), P197S
(12 and 13), and P319S (lanes 16 and
17) significantly reduced,
or in some cases eliminated, VIC formation.
In striking contrast,
P252S (lanes 14 and 15) retained substantial
complex-forming activity.
Immunoblotting with

HA and

T7
monoclonal antibodies showed that
the mutant versions of
HCF-1
N380 were expressed at levels similar
to those for the
wild type and that the levels of T7-epitope tagged
VP16 increased in
proportion to the amount of expression plasmid
(Fig.
2B). Thus, five of
the six HCF
KEL repeats contribute to
VIC assembly.

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FIG. 2.
Proline-to-serine substitutions at position 4 in each
HCFKEL repeat. (A) HCF-1 polypeptides were coexpressed with
VP16 C by transfection of 293T cells. Extracts were prepared after
40 h and assayed for VIC formation in an electrophoretic mobility
shift assay. The first three lanes are controls showing probe alone
(lane 1), Oct-1 POU domain protein alone (lane 2), and cell extract
transfected with 1 µg of VP16 C (lane 3). Each
HCF-1N380 expression plasmid (1 µg) was cotransfected
with 0.1 and 1.0 µg of VP16 C expression plasmid. The
HCF-1N380 proteins used are indicated above the lanes.
Positions of the free probe, Oct-1 POU domain complex, and VIC
containing native (endogenous) human HCF-1 (endog.VIC) or truncated
HCF-1 (mini-VIC) are indicated. (B) Coimmunoprecipitation of VP16. To
measure the direct association between HCF-1N380 and
VP16 C, the extracts shown in panel A were subject to
coimmunoprecipitation assay. Extracts were immunoprecipitated (IP) with
an HA antibody (12CA5) coupled to agarose beads and resolved on an
SDS-12% polyacrylamide gel, and coimmunoprecipitated VP16 was
detected by immunoblotting with an T7 epitope tag antibody. Direct
immunoblotting of the extracts (lower two panels) showed that each
HA-tagged HCF-1 polypeptide was expressed at equivalent levels and that
the expression of T7-tagged VP16 was proportional to amount of input
plasmid. Irrelevant cross-reacting polypeptides are indicated with an
asterisk.
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Using a coimmunoprecipitation assay (Fig.
2B), we compared the ability
of each mutant

-propeller domain to associate with
VP16. Using the
same transfected cell extracts, HA-tagged HCF-1
polypeptides were
recovered by immunoprecipitation with an

HA
antibody, and the
coimmunoprecipitated VP16 was detected by immunoblotting
with an

T7
antibody. Consistent with the inability to support
VIC formation,
P134S, P197S, and P319S were severely compromised
for association with
VP16. In contrast, P30S, P79S, and P252S
retained significant activity,
suggesting that the P30S and P79S
mutants affect a different aspect of
complex assembly. P252S was
unique in being essentially wild type for
association and VIC
formation.
The conserved arginine at position 7 in each HCFKEL
repeat is critical for activity.
With the exception of
HCFKEL2, the amino acid residue at position 7 of each
HCFKEL repeat corresponds to an arginine residue, again
implying a critical role in domain function. In HCFKEL2 (or, interestingly, in the analogous position in HCF-2), this position
is occupied by a cysteine residue. To address the importance of this
semiconserved position with respect to association with VP16, we made a
set of radical substitution mutants, replacing the residue at position
7 with an aspartic acid. We chose this substitution because C. elegans HCF uses an alanine at position 7 in HCFKEL2
(27), suggesting that a noncharged residue may be more
readily tolerated. Unfortunately, we were unable to generate a mutation
at R33 in HCFKEL1. Our analysis of these point mutants is
shown in Fig. 3A. Exchanging the cysteine
at position 82 for aspartic acid led to only a moderate reduction in
complex formation (Fig. 3A, compare lane 6 with lane 8). In contrast,
R137D (lane 9), R200D (lane 10), R255D (lane 11), and R322D (lane 12)
disrupted VIC formation. The experiment shown in Fig. 3A and B used
HCF-1N380 polypeptides expressed by in vitro translation.
Equivalent results were obtained for HCF-1 expressed by transient
transfection, and we have chosen to show the in vitro translation
experiment simply because P134S (lane 7) retains some activity when
expressed in a cell-free system and is actually more active than R137D,
R200D, R255D, and R322D. This implies that the arginine-to-aspartic
acid substitution is extremely severe, perhaps resulting in a gross disruption of the
-propeller structure.

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FIG. 3.
Radical substitution of the conserved arginine residue
at position 7 of each HCFKEL repeat has a severe effect on
VIC formation. (A) Electrophoretic mobility shift assay of HCF-1
proteins expressed by in vitro translation. The first three lanes are
controls showing probe alone (lane 1), Oct-1 POU domain protein alone
(lane 2), bacterially produced glutathione
S-transferase-VP16 C (lane 3), or unprogrammed
reticulocyte lysate (lane 4). In the remaining lanes, unprogrammed
lysate (lane 5) or lysates expressing recombinant HCF-1N380
polypeptides were mixed with glutathione
S-transferase-VP16 C (lanes 6 to 12). The
HCF-1N380 proteins used are indicated above the lanes.
Positions of the free probe, Oct-1 POU domain complex, and VIC
containing rabbit HCF-1 from the lysate (endog.VIC) or truncated
HCF-1N380 (mini-VIC) are indicated. A nonspecific complex
is indicated with an asterisk. (B) In vitro translation products were
resolved on an SDS-12% polyacrylamide gel and detected by
fluorography. (C) Electrophoretic mobility shift assay. Extracts were
prepared from transfected 293T cells expressing wild-type or mutant
versions of HCF-1N380 together with 0.01 µg (lanes 4, 7, and 10), 0.1 µg (lanes 5, 8, and 11), and 1.0 µg (lanes 6, 9, and
12) of VP16 C expression plasmid. The HCF-1N380 proteins
used are indicated above the lanes. (D) The extracts shown in panel C
were used in a coimmunoprecipitation assay as described for Fig. 2B.
The upper panel shows the HA-immunoprecipitated (IP) proteins probed
with T7 antibody; the lower two panels show direct immunoblots of
the extracts. Each HCF-1N380 expression plasmid (1 µg)
was cotransfected with 0.01 µg (lanes 2, 5, and 8), 0.1 µg (lanes
3, 6, and 9), and 1.0 µg (lanes 4, 7, and 10) of VP16 C expression
plasmid. The transfections were as follows: VP16 alone (1.0 µg, lane
1), wild-type HCF-1N380 (lanes 2 to 4), P134S (lanes 5 to
7), and C82D (lanes 8 to 10).
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To better evaluate the relative activity of the C82D mutant, we
titrated the amount of VP16 (Fig.
3C and D). 293T cells were
transfected with a constant amount of each HCF-1
N380
expression
plasmid and increasing amounts of VP16 expression plasmid.
VIC
formation was measured by electrophoretic mobility shift assay
(Fig.
3C). The amount of complex formed by wild-type
HCF-1
N380 (Fig.
3C, lanes 4 to 6) and C82D (lanes 10 to 12)
increased in
proportion to the amount of VP16 expressed. Quantitation
revealed
a five- to sixfold reduction in complex formation by C82D. We
also assayed direct association by coimmunoprecipitation (Fig.
3D).
C82D showed a reduction in binding comparable to that for
VP16 (compare
lanes 2 and 3 with lanes 8 to 10). Overall, these
results indicate that
the arginine residue at position 7 in five
of the six
HCF
KEL repeat is essential for VIC assembly and that
the
variant cysteine at position 82 in HCF
KEL2 is less
critical.
Residues within the 2-3 loops also contribute to VIC assembly.
Next we examined the role of the 2-3 loops (connecting
2 to
3),
which also contribute to the predicted top surface of the
-propeller. In HCF-1, the 2-3 loops show relatively little sequence homology to each other and also differ significantly in length (Fig.
1B). To determine whether the 2-3 loops contribute to interaction with VP16, we generated substitutions in the 2-3 loops of
HCFKEL2 (K105D), HCFKEL4 (R228D),
HCFKEL5 (EWK289A3), and HCFKEL6 (RK344A2). Each
mutant was expressed in transfected 293T cells and assayed for
association with VP16 by the electrophoretic mobility shift and
coimmunoprecipitation assays (Fig. 4).
Substitutions in HCFKEL2 (K105D) and HCFKEL5
(EWK289A3) had a minor affect on both VIC assembly (Fig. 4A, lanes 8, 9, 12, and 13) and association with VP16 (Fig. 4B, lanes 6, 7, 10, and
11), suggesting that these residues do not make a significant
contribution to complex assembly. In contrast, mutation in
HCFKEL4 (R228D) and HCFKEL6 (RK344A2) disrupted
VIC assembly (Fig. 4A, lanes 10, 11, 14, and 15). This result indicates
that residues in the 2-3 loops of HCFKEL4 and HCFKEL6 are critical for VIC assembly. In contrast to a
previous report (34), the K105D mutation had only a minor
effect on VIC assembly.

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FIG. 4.
Residues within the 2-3 loops also participate in
association with VP16. (A) HCF-1 polypeptides were expressed with
VP16 C by cotransfection of 293T cells and assayed for VIC formation.
The first three lanes are controls showing probe alone (lane 1), Oct-1
POU domain protein alone (lane 2), and cell extract transfected with
1.0 µg of VP16 C (lane 3). Each HCF-1N380 expression
plasmid (1.0 µg) was cotransfected with 0.1 and 1.0 µg of VP16 C
expression plasmid. The HCF-1N380 proteins used are
indicated above the lanes. (B) Coimmunoprecipitation assay using
extracts from panel A. The upper panel shows the
HA-immunoprecipitated proteins (IP) probed with T7 antibody; the
lower two panels show direct immunoblots of the extracts. The samples
were as indicated above the lanes.
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To determine whether the R228D and RK344A2 prevent VIC assembly through
a failure to recruit VP16, we measured direct association
by
coimmunoprecipitation. R228D was severely compromised for association
with VP16 (Fig.
4B, lanes 8 and 9), thus accounting for the lack
of VIC
assembly. In this respect, R228D resembles the inactivating
R-to-D
mutations at position 7 in the 4-1 loops (Fig.
3). In contrast,
the
behavior of RK344A2 was more similar to that of P30S and P79S
(Fig.
2).
Although unable to mediate VIC assembly, RK344A2 remained
competent for
association with VP16 (Fig.
4B, lanes 12 and 13).
This interesting
result demonstrates that association of HCF-1
with VP16 is not in
itself sufficient for VIC
assembly.
To further compare K105D and RK344A2, we performed a broader titration
of VP16 levels (Fig.
5). Even at the
lowest concentration
of VP16 (50 ng), both wild-type
HCF
N380 and K105D supported complex
assembly (Fig.
5A,
lanes 4 and 8). For wild-type HCF-1, complex
formation increased in
proportion to input VP16 (lanes 4 to 7).
In contrast, the amount of
complex formed by K105D reached a maximum
at 150 ng of VP16 plasmid
(lane 9) and then remained constant
(lanes 10 and 11). At present, we
do not understand this plateau
effect. Finally, at all levels of VP16
assayed, RK344A2 failed
to assemble a VIC (lanes 12 to 15). Even with 5 µg of VP16 expression
plasmid, we were unable to detect complex
formation by this mutant
(data not shown).

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FIG. 5.
RK344A2 associates with VP16 and yet fails to support
VIC formation. (A) Transfected 293T cells extracts were prepared and
assayed by electrophoretic mobility shift assay as described for Fig.
2. The first three lanes are controls showing probe alone (lane 1),
Oct-1 POU domain protein alone (lane 2), and cell extract transfected
with 1.35 µg of VP16 C (lane 3). Each HCF-1N380
expression plasmid (1.0 µg) was cotransfected with 0.05, 0.15, 0.45, or 1.35 µg of VP16 C expression plasmid. The HCF-1N380
proteins used are indicated above the lanes. (B) Coimmunoprecipitation
assay using extracts from panel A. The upper panel shows the
HA-immunoprecipitated (IP) proteins probed with T7 antibody; the
lower two panels show direct immunoblots of the extracts. The samples
are as follows: VP16 alone (lane 1) or increasing amounts of VP16
expression plasmid cotransfected with wild-type HCF-1N380
(lanes 2 to 5), K105D (lanes 6 to 9), and RK344A2 (lanes 10 to 13).
|
|
When assayed for direct association with VP16 (Fig.
5B), we found no
significant difference between K105D and wild-type
HCF-1
N380 (compare lanes 2 to 5 with lanes 6 to 9).
RK344A2, on the other
hand, showed a small reduction in its ability the
recovery VP16
(best illustrated by comparing lanes 2 and 10); however,
this
difference is not large enough to account for the loss of VIC
formation. In summary, the RK344A2 mutant is unable to form a
VIC but
retains the ability to associate with
VP16.
Mutagenesis of VP16 has shown that residues involved in association
with Oct-1 lie very close to those required for association
with HCF-1
(
24), and it is possible that the RK344A2 mutation
interferes with the Oct-1 POU domain, thus explaining the loss
of VIC
formation. To address this directly, we performed coimmunoprecipitation
experiments using in vitro-translated HA-tagged HCF-1
N380
and
untagged in vitro-translated full-length Oct-1 (Fig.
6). We
typically
recovered five- to sixfold more Oct-1 with wild-type
HA-tagged
HCF-1
N380 than with antibody beads alone (Fig.
6A, upper panel,
compare lanes 1 and 2),
suggesting that HCF-1 and Oct-1 can indeed
interact weakly in the
absence of VP16. Interestingly, the RK344A2
mutant was unable to
coprecipitate Oct-1 above the level of beads
alone (compare lanes 1 and
4). Oct-1 could be recovered with HCF-1
N380 P134S (lane 3)
and EWK389A3 (lane 5), although the efficiency
was slightly less than
the wild-type level.

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FIG. 6.
The RK344A2 mutation interferes with
coimmunoprecipitation of Oct-1. Full-length Oct-1 and HA-tagged
HCF-1N380 were expressed in vitro and mixed, and
coassociation was assayed by coimmunoprecipitation using HA antibody
beads. Immunoprecipitates (IP) were fractionated by SDS-PAGE (10%
gel), and radiolabeled proteins detected by fluorography (upper panel).
The input translations (prior to mixing) are shown in the lower
panel.
|
|
VP16 and LZIP show different sensitivities to individual point
mutants in the HCF-1
-propeller.
VP16 and LZIP contain a
tetrapeptide sequence (EHAY in VP16 [residues 361 to 364] and DHTY in
LZIP [residues 78 to 81]), HBM, that is essential for association
with HCF-1 (5, 29). In both VP16 and LZIP, individual
mutation of the acidic, histidine, or tyrosine residue was sufficient
to prevent association with HCF-1 (5, 29). This similarity
suggested that the two proteins interact with HCF-1 equivalently. To
examine this further, we used a cell-based recruitment assay to compare
the sensitivities of VP16 and LZIP binding to each of the
HCFVIC domain mutants (Fig.
7). We used this recruitment assay
because LZIP is expressed at very low levels in transfected cells,
making it difficult to quantitate association with cotransfected HCF-1
mutants by coimmunoprecipitation. The HCF-1
-propeller domain was
expressed in 293T cells as a Gal4 fusion together with either VP16
(residues 5 to 490) or the amino terminus of LZIP (residues 1 to 154).
Recruitment was measured in terms of activation of a Gal4-responsive
luciferase reporter gene and the amounts of each expression plasmid
chosen to give a linear response (data not shown). The recruitment of
VP16 was generally consistent with the results of the
immunoprecipitation assay described above. The one exception was P30S,
which immunoprecipitated VP16 relatively efficiently (Fig. 2B, lanes 3 and 4) but failed to interact in the recruitment assay. This result was
highly reproducible, and the reason for this single inconsistency is
unclear.

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FIG. 7.
Individual mutations in the HCFVIC domain
have different effects on association with VP16 and LZIP. A cell-based
recruitment assay was performed with transiently transfected 293T
cells. A Gal4-responsive luciferase reporter gene (p5xGal-E1B-luc) was
transfected into 293T cells by electroporation together with 1 µg of
wild-type or mutant version of pCGNGal(1-94)HCF-1N380 and
500 ng of pCGTVP16 C or pCGTLZIPN154, as indicated. The
values are the average of three independent transfections, and the
standard deviation from the mean is indicated by error bars. Fold
activation was calculated relative to the activity of wild-type
pCGNGal(1-94)HCF-1N380 cotransfected with pUC119.
|
|
Although VP16 and LZIP use a related sequence motif (the HBM) to
associate with HCF-1, we observed striking differences in
their
sensitivities to individual point mutations in the HCF-1

-propeller.
P79S, C82D, and EWK2893A disrupted the recruitment
of LZIP more than
VP16, in each case reducing the association
to less than 10% of the
wild-type level. RK344A2 showed the reverse
phenotype, having a minimal
effect on recruitment of LZIP while
reducing association with VP16 to
approximately 50% of that of
wild-type HCF-1. Of the mutations
assayed, K105D was unique in
having a minimal effect on both
interactions. These results indicate
that the HCF-1

-propeller
domain recognizes LZIP and VP16 differently.
Because point mutations
within the HBM tetrapeptide (
5,
29)
behave similarly, it is
likely that differential recognition is
mediated by the nonconserved
sequences flanking the
HBM.
Limited correlation between complementation of the
tsBN67 proliferation defect and association with VP16 or
LZIP.
Inactivation of the HCFVIC domain in
tsBN67 cells leads to a G1/G0 cell
cycle arrest. This defect can be complemented by stable expression of
an amino-terminal fragment (residues 1 to 902) comprising the
HCFVIC domain, amino-terminal self-association domain
(HCFSASN), and basic region (Fig. 1A) (8, 14,
47). The association of LZIP with HCF-1 is prevented by the
tsBN67 mutation, suggesting that LZIP is a candidate target
of HCF-1 in controlling cell proliferation (5). To address
this, we asked whether there is a close correlation between the ability
of HCFVIC to interact with LZIP and to support the growth
of tsBN67 cells at the nonpermissive temperature. Each mutant was constructed in an expression plasmid encoding the
amino-terminal 902 residues of HCF-1 (pCGNHCF-1N902) and
transfected into tsBN67 cells together with a selectable
marker. After nearly 2 weeks at the nonpermissive temperature, the
number of proliferating (or complemented) colonies was determined.
Under the conditions used, wild-type HCF-1N902 gave a large
number of colonies (~120 to 200/dish), whereas an empty vector
produced no more than one or two revertant colonies. Representative
plates are shown in Fig. 8A, and
complementation by each of the mutants is summarized in Fig. 8B. These
fell into two categories: those capable of supporting cell
proliferation and those that were incapable. Mutations at positions 4 (P30S, P79S, P134S, P197S, P252S, and P319S) and 7 (C82D, R137D, R200D,
R255D, and R322D) of each HCFKEL repeat abolished complementation. Although complementation appears to be an all-or-none event, subcloning reveals small differences in the relative growth rates of rescued colonies, presumably reflecting differences in the
capability of individual mutations to promote G1
progression (data not shown).

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FIG. 8.
K105D, EWK289A3, and RK344A2 complement the
tsBN67 cell proliferation defect. (A) Hamster
tsBN67 cells were stably transfected with 1 µg of
pCGNHCF-1N902 wild type, P134S, K105D, EWK298A2, and
RK344A2. Following transfection, cells were incubated at 39.5°C with
G418 for 2 weeks, and proliferating (rescued) colonies were stained
with 0.5% crystal violet. (B) Quantitation of the number of rescued
colonies after 2 weeks of selection at the nonpermissive temperature.
Numbers are expressed relative to the value for wild-type HCF-1
(pCGNHCF-1N902).
|
|
The failure of P252S to support
tsBN67 cell proliferation is
especially interesting because this mutation has a relatively
minor
effect on interaction with VP16 and LZIP (~80 and 60%, respectively,
of the wild-type level [Fig.
7]). It is useful to contrast P252S
with
S338A, which showed a greater reduction in association with
VP16 and
LZIP (<45% activity [Fig.
7]) and yet was sufficient
to complement
the
tsBN67 growth defect. These results show that
the
ability to interact with VP16 serves as a poor indicator of
the ability
to support cell proliferation. Perhaps most striking
outcome of this
analysis was the behavior of EWK289A3. Although
this mutant was
severely compromised for interaction with LZIP
(Fig.
7), it was fully
sufficient to rescue
tsBN67 cell growth.
This results argues
that interaction with LZIP is not in itself
required for HCF-dependent
cell proliferation and points to the
existence of other cellular
targets for the HCF-1

-propeller.
 |
DISCUSSION |
In this study, we have used mutagenesis to probe the structure of
the HCF-1
-propeller domain and have identified a number of mutants
that disrupt the three known functions of the domain: VIC assembly,
recruitment of HCF-1 to the cellular transcription factor LZIP, and
complementation of the tsBN67 proliferation defect. The
properties of each mutant (summarized in Table
1) can be grouped into three functional
categories: inactive, partially active, and fully active. Eight of the
mutants (P134S, P197S, P319S, R137D, R200D, R255D, R228D, and R322D),
including the previously characterized tsBN67 mutant
(P134S), were inactive for all three functions. This may indicate a
shared role for each of these evolutionarily conserved residues or that
these substitutions simply bring about a global change in domain
structure. Separating these two options will require further analysis;
however, the fact that all of these mutants were expressed at
near-wild-type levels and were equally soluble argues against a global
defect in folding of the
-propeller.
Of the remaining eight mutants, two (K105D and S338A) showed little or
no phenotype, while six (P30S, P79S, C82D, P252S, EWK289A2, and
RK344A2) showed differential effects on each of the functions tested.
This latter class of mutants is likely to be the most informative. Four
mutants (P79S, C82D, EWK289A3, and RK344A2) showed significant
differences in the ability to interact with LZIP compared to VP16. This
was most striking in EWK289A3, which was similar to wild type for
association with VP16 but inactive for association with LZIP. These
results point to an important role for residues flanking the core HBM
tetrapeptide. It should be noted that while mutagenesis of VP16
implicates three aspartic acids (residues 385 to 387) on the
carboxy-terminal side of the HBM (361 to 364) in HCF-1 binding
(24), both LZIP and its Drosophila homologue
dCREB-A/BBF-2 lack an equivalent acidic stretch.
Association of HCF-1 with VP16 is not sufficient for VIC
formation.
HCF-1's role in VIC formation is poorly understood.
HCF-1 is not essential for specific recognition of Oct-1 or the
TAATGARAT element by high levels of VP16 in vitro (38, 44)
but is required for VIC formation at lower protein concentrations and
in vivo (8, 24). Deletion and mutagenesis studies of VP16
have mapped the primary determinants for interaction with Oct-1, HCF-1,
and the TAATGARAT element to a small region between residues 331 and 391 of VP16 (9, 11, 24, 38). Although this region is unstructured in the VP16 crystal structure, it is thought that part of
this loop may fold as an amphipathic
-helix, capable of packing
against helices 1 and 2 on the exposed surface of the Oct-1 homeodomain
(25, 26). HCF-1 may facilitate the Oct-1-VP16 interaction by
stabilizing this
-helix (24). The predicted
-helix
(VP16 residues 376 to 387) lies between the HBM and three aspartic acid
residues implicated in HCF-1 association (24). By clasping
each end of the recognition
-helix or by constraining the loop
within a narrow groove, it seems reasonable to imagine that HCF-1
stabilizes the more ordered conformation and thus facilitates VIC formation.
Studies of other

-propeller proteins provide precedent for the idea
that

-propeller domains serve as docking sites for flexible
arms
that extend from unrelated proteins. In the targeting of
membrane
proteins to coated pits, adapter molecules such as

-arrestin
and
arrestin 3 use a short unstructured peptide to interact with
the
seven-bladed

-propeller of the clathrin terminal domain (
20,
40). The flexible arm of arrestin uses three hydrophobic residues
and several acidic residues to interact with clathrin, and this
is
reminiscent of the conserved acidic and hydrophobic residues
of the
HCF-binding tetrapeptide. The arrestin peptide itself interacts
with
hydrophobic and positively charged residues lining a shallow
groove
formed by blades 1 and 2 of the clathrin

-propeller (
7,
40). This contrasts with our analysis of HCF-1, which implicated
all six blades of the

-propeller. Thus, the disordered loop
presented
by VP16 and LZIP may fit into a centrally located groove
involving
residues from each of the HCF
KEL repeats.
Alternatively, it may
be that some of the mutations tested in this
study affect the
overall structure of the domain and thus indirectly
influence
a more limited functional surface. Indeed, exchanges between
the

-propeller domains of HCF-1 and HCF-2 highlight the most
divergent
repeat, HCF
KEL5, as the primary determinant for
specific recognition
of LZIP and VP16 (
14).
Using in vitro-translated proteins, we have shown that an HA-tagged
version of the HCF-1

-propeller can immunoprecipitate
full-length
Oct-1. This association is sensitive to the RK344A2
mutation in HCF-1,
suggesting that perhaps the mutant fails to
support VP16-induced
complex formation by preventing efficient
recruitment of Oct-1. Based
on the current data, we cannot say
whether the association is direct or
is mediated by other components
present in the reticulocyte lysate.
However, we did find that
Oct-1 was not coprecipitated in the presence
of the DNA-intercalating
agent ethidium bromide (data not shown),
suggesting that DNA fragments
in the lysate might contribute in some
way to the
association.
The
-propeller as a molecular work surface.
-Propeller
proteins perform a remarkable variety of functions (reviewed in
reference 37). Some have enzymatic activity, while
others serve as scaffolds upon which protein-protein interactions are
built. Perhaps as a result of this inherent flexibility,
-propeller-containing proteins are implicated in such diverse
functions as protein trafficking (40), signal transduction
(6), regulation of chromatin structure (30),
transcriptional activation, and transcriptional repression (4, 15,
17). One emerging theme that unites these different examples is
the ability of a single
-propeller domain to associate with a
variety of target molecules (17, 33, 40). Because the
-propeller fold does not require a strict sequence pattern, it may
be particularly amenable to the evolution of shallow grooves capable of
trapping solvent-exposed flexible arms that are presented by partner
proteins. At the same time, the compact nature of the domain provides
an opportunity for regulation, either by steric hindrance or through
the ability to bring prospective partners into close proximity to each
other. For instance, a number of different regulatory cofactors
interact with the
-propeller subunit of heterotrimeric G proteins
and use steric hindrance to prevent the GDP-binding G
subunit from
accessing its binding site on the
-propeller (3, 6). The
HCFVIC domain provides a good example of how the compact
architecture of the
-propeller fold can be used to promote
protein-protein interactions. Thus, HCF-1 is able to regulate viral
immediate-early gene transcription, and ultimately the viral life
cycle, by simply enabling VP16 and Oct-1 to come together on the
TAATGARAT element.
The HCF-1
-propeller serves as an interaction site for multiple
cellular components.
The results presented in this study argue
that HCF-1 does not need to recruit LZIP in order to promote
G1 progression. This is best illustrated by the behavior of
mutants P252S and EWK289A3. Although the P252S mutation can still
interact with LZIP (~80% of the wild-type level [Fig. 7]), it is
unable to overcome the tsBN67 block to cell proliferation.
One interpretation of this result is that the P252S mutation effects an
undescribed interaction with another cellular component necessary for
cell cycle progression. The behavior of EWK289A3 also brings into
question the relevance of LZIP to understanding HCF-dependent
proliferation: this mutant is able to complement the tsBN67
proliferation defect and yet appears to be severely impaired for
association with LZIP. This observation argues that the HCF-1-LZIP
interaction must not be essential for tsBN67 cell growth.
While it is conceivable that on natural target promoters the weakened
association between EWK289A3 and LZIP is stabilized through additional
protein-protein or protein-DNA interactions, we favor the hypothesis
that the cell cycle arrest reflects the disruption of an interaction
between the HCF-1
-propeller and an additional cellular protein. To
this end, we have recently identified an unrelated cellular polypeptide
that interacts with the HCF-1
-propeller mutants in a manner more
closely paralleling the results of the tsBN67
complementation assay. Specifically, the new candidate interacts in a
yeast-based assay with EWK289A3 and RK344A2 but not with P252S or P134S
(S. S. Mahajan, M. D. Little, and A. C. Wilson,
unpublished data). Its role in promoting cell proliferation is
currently under investigation.
 |
ACKNOWLEDGMENTS |
We thank Michael Garabedian, Richard Freiman, and Naoko Tanese
for thoughtful comments on the manuscript; we also thank Muktar Mahajan
and Kristy Johnson for help with the mutagenesis.
This work was supported by a development award from the Kaplan
Comprehensive Cancer Center and an institutional award from the
American Cancer Society (IRG-14-39).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Microbiology, 550 First Ave., New York, NY 10016. Phone: (212)
263-0206. Fax: (212) 263-8276. E-mail:
wilsoa02{at}popmail.med.nyu.edu.
 |
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Molecular and Cellular Biology, February 2000, p. 919-928, Vol. 20, No. 3
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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