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Molecular and Cellular Biology, March 2000, p. 1733-1746, Vol. 20, No. 5
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
A Combinatorial Code for Gene Expression Generated
by Transcription Factor Bach2 and MAZR (MAZ-Related Factor) through the
BTB/POZ Domain
Akira
Kobayashi,1
Hironori
Yamagiwa,2
Hideto
Hoshino,1
Akihiko
Muto,1
Kazushige
Sato,1
Masanobu
Morita,2
Norio
Hayashi,1
Masayuki
Yamamoto,2 and
Kazuhiko
Igarashi1,3,*
Department of Biochemistry, Tohoku University School of
Medicine, Sendai 980-8575,1 Center for
Tsukuba Advanced Research Alliance and Institute of Basic Medical
Sciences, University of Tsukuba, Tsukuba
305-8577,2 and Department of
Biochemistry, Hiroshima University School of Medicine, Hiroshima
734-8551,3 Japan
Received 27 August 1999/Returned for modification 28 September
1999/Accepted 29 November 1999
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ABSTRACT |
Bach2 is a B-cell- and neuron-specific transcription repressor that
forms heterodimers with the Maf-related oncoproteins. We show here that
Bach2 activates transcription by interacting with its novel partner
MAZR. MAZR was isolated by the yeast two-hybrid screen using the
BTB/POZ domain of Bach2 as bait. Besides the BTB/POZ domain, MAZR
possesses Zn finger motifs that are closely related to those of the
Myc-associated Zn finger (MAZ) protein. MAZR mRNA was coexpressed with
Bach2 in B cells among hematopoietic cells and in developing mouse limb
buds, suggesting a cooperative role for MAZR and Bach2 in these cells.
MAZR forms homo- and hetero-oligomers with Bach2 through the BTB
domain, which oligomers bind to guanine-rich sequences. Unlike MAZ,
MAZR functioned as a strong activator of the c-myc promoter
in transfection assays with B cells. However, it does not possess a
typical activation domain, suggesting a role for it as an unusual type
of transactivator. The fgf4 gene, which regulates
morphogenesis of limb buds, contains both guanine-rich sequences and a
Bach2 binding site in its regulatory region. In transfection assays
using fibroblast cells, the fgf4 gene was upregulated in
the presence of both MAZR and Bach2 in a BTB/POZ domain-dependent
manner. The results provide a new perspective on the function of
BTB/POZ domain factors and indicate that BTB/POZ domain-mediated
oligomers of transcription factors may serve as combinatorial codes for
gene expression.
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INTRODUCTION |
Eukaryotic genes are most often
regulated by the simultaneous, synergistic activity of several
transcription factors. Protein-protein interactions play important
roles in synergistic activity among these factors. In this respect,
the BTB/POZ domain (2, 4, 43) may be of particular interest
because of its recurrent presence in transcription factors and its
activity with regard to directing specific interactions. The genome
project of Caenorhabditis elegans revealed that worms
possess more than 100 genes that code for BTB/POZ domain proteins. Thus
the BTB/POZ domain constitutes one of the largest families of protein
domains in multicellular organisms (10). Interestingly,
transcription factors encoding this domain are thought to play a
variety of structural and organizational roles (1, 2, 4, 13, 21,
34, 35). For example, the Drosophila GAGA factor is
involved in chromatin remodeling and in mediating enhancer-promoter
interactions (34). Alterations of the PLZF and BCL6 genes,
both encoding BTB/POZ factors, are associated with oncogenesis (9,
41). BTB/POZ domains appear to direct specific protein-protein
interactions. However, the exact significance of such interactions in
transcription regulation remains unclear.
The mammalian transcription factors Bach1 and Bach2 (36)
belong to the CNC-related bZip factors that include the hematopoietic factors NF-E2 p45 (3), Nrf1 (6, 7, 28), Nrf2
(18, 31), and Nrf3 (24). Among these factors,
Bach1 and Bach2 are unique in that they each possess a BTB/POZ domain.
The CNC-related factors form heterodimers with the Maf-related factors
through the leucine zippers and bind to the DNA sequence motif called MARE, which contains an AP-1 binding sequence. MARE is found in regulatory regions of various genes like
-globin genes,
immunoglobulin heavy-chain genes, antioxidant response genes (e.g., GST
genes), and crystallin genes (20). These observations
suggest that transcription factors binding to the MARE may play
important roles in a variety of vertebrate cell types and that only
very few of the actual target genes of the CNC family have been identified.
Among the CNC-related factors, Bach1 and Bach2 function as
transcription repressors. In B cells, Bach2 represses the
immunoglobulin heavy-chain 3' enhancer, or LCR, perhaps through binding
to the corepressor SMRT (32). Since Bach2 possesses the
BTB/POZ domain in the N terminus, it may regulate gene expression by
interacting with other factors through the BTB/POZ domain. In this
study, we identified a new BTB/POZ domain factor, MAZR, which
associates with Bach2 through the BTB/POZ domain. MAZR stimulated
transcription despite of its lack of any apparent transcription
activation domain. Rather, BTB/POZ-mediated oligomer formation was
important for transcriptional activity, suggesting that MAZR might be
not a typical transactivator but an architectural transcription factor like Drosophila GAGA factor (21). Together with
previous observations, our results suggest that BTB/POZ-mediated
oligomers of transcription factors play important roles in gene activation.
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MATERIALS AND METHODS |
Abbreviations.
The following abbreviations are used: AER,
apical ectodermal ridge; Bach1 and Bach2, BTB and CNC homology factors
1 and 2, respectively; BTB, broad complex tramtrack bric-a-brac; bZip, basic region leucine zipper; CNC, Cap'n' collar; DBD, DNA binding domain; dpc, days post coitus; EMSA, electrophoretic mobility shift
analysis; FGF, fibroblast growth factor; MARE, Maf recognition element;
MAZ, Myc-associated Zn finger protein; MAZR, MAZ-related factor; MBP,
maltose-binding protein; LCR, locus control region; POZ, pox and Zn
finger; GAD, GAL4 activation domain; GBD, GAL4 DNA-binding domain;
G-rich, guanine rich; PLZF, promyelocytic leukemia Zn finger; BCL6,
B-cell lymphoma 6; GST, glutathione S-transferase; SMRT,
silencing mediator of retinoid and thyroid receptor.
Two-hybrid screen and assays.
The bait plasmid
pGBD-Bach2/BTB was constructed by inserting a portion of the Bach2
cDNA, encoding the amino-terminal 413 residues, into the
EcoRI site of pGBT9 (Clontech) after isolating the cDNA
fragment by PCR. The yeast two-hybrid screen was performed, as
described previously (36), by using pGBD-Bach2/BTB as bait and a 17-dpc embryo cDNA library (Clontech). Approximately 2 × 108 yeast transformants were screened for His autotrophy,
and
-galactosidase filter assay was used to isolate three positive
clones. One of them was sequenced in both directions. The
transformation of Saccharomyces cerevisiae SFY526 and
measurements of
-galactosidase activities were performed as
described previously (24).
Plasmids.
pEF-MAZR was generated by inserting the
2.4-kbp EcoRI fragment into the fill-ended BssHII
site of pEF-BssHII (30). The FLAG epitope-tagged expression
plasmids pEF-fMAZR, pEF-fMAZR
BTB, pEF-fMAZR
(1-219) and
pEF-fMAZR
(1-288) were created as follows. The 2.4-kbp
EcoRI fragment of GAD-MAZR and the PCR-created fragments
were inserted into the EcoRI site of pBSK-FLAG (a kind gift
from K. Itoh). The BssHII fragments of the resultant
plasmids were subcloned into the BssHII site of pEF-BssHII.
The primers used were 5'-CGGAATTCAGGTCGGTCATCGAGATCTG-3', 5'-CGGAATTCATTGCGGGCCAAGCTTCTCT-3', 5'-CGGAATTCGCAGGCATCCTTCCATGTGG-3', and T7. The 2.4-kbp fill-ended BamHI fragment of the
resultant plasmid was inserted into the blunt-ended
BssHII site of pEF-BssHII. Expression plasmids of
GAD-MAZR/BTB and GBD-MAZR/BTB were constructed by inserting the 900-bp
PCR-created fragment of GAD-MAZR into the EcoRI sites of
GAD424 and GBD, respectively, and that of GBD-Bach2/bZip was
constructed by inserting the 1.3-kbp PCR-created fragment of pCMSV
Bach2J/F into the EcoRI-BamHI site of GBD.
GAD-MAZR
BTB was created by inserting the 2-kbp EcoRI
fragment of pEF-fMAZR
BTB into the EcoRI site of GAD424.
pGBD-Bach1/BTB, which expresses Bach1 BTB domain fused with the GBD,
was described previously (36). Expression plasmids of pcDNA
GAL4DBD and pcDNA GAL-MAZR(1-288) were generated by inserting the 900- and the 1,900-bp HindIII fragments of pGBT9 and
GBD-MAZR/BTB into the HindIII site of pcDNA3.1/Myc-HisC (Invitrogen), respectively. pcDNA-GAL-MAZR, pcDNA-GAL-MAZR(288-641), pcDNA-GAL-MAZR(1-145), pcDNA-GAL-MAZR(145-288),
pcDNA-GAL-MAZR(145-219), and pcDNA-GAL-MAZR(219-288) were created
by subcloning the 2,400-bp EcoRI fragment of GAD#49-1 and
the respective PCR-created fragments into the EcoRI site of
pcDNA GAL4. The primers used were
5'-CGGAATTCAGCAGCACCTGTGGCCCTGG-3', 5'-CGGAATTCTCAATCAGCAGGAACTTGGC-3', 5'-CGGAATTCCCTCAAGCCCCCTGGA-3', 5'-CGGAATCAGGTCGGTCATCGAGATCTG-3', and
5'-TACCACTACAATGGATG-3'.
RNA blot analysis.
Total RNA samples from various tissues
and cultured cell lines were prepared by the guanidine-acidified phenol
chloroform method (11). RNA samples were electrophoresed
with a 1.0% agarose gel containing 1.1 M formaldehyde and transferred
onto ZetaProbe membranes (Bio-Rad). Radiolabeled probe was prepared
from the full-length cDNA of MAZR and hybridized at 65°C for 1 h
with ExpressHybri (Clontech).
In situ RNA hybridization.
Embryos (10.5 dpc) were analyzed
for MAZR, Bach2, and FGF4 expression by whole-mount in situ
hybridization with digoxygenin-labeled RNA probes, as described
previously (40). MAZR probe (full length of cDNA), Bach2
probe (nucleotides 232 to 793), and FGF4 (full-length cDNA; a kind gift
from G. Martin [15a]) in pBluescript were
transcribed in the antisense and sense directions. In situ
hybridization was performed essentially as described previously
(40), with 0.3 to 0.5 µg of cRNA probe per ml at 65°C
for 1 h.
Transient transfection assay.
pMycluc was constructed by
inserting a HindIII fragment of about 2,400 bp from
pMycCAT (a kind gift from Kazunari Yokoyama, RIKEN) into the
HindIII site of pGL3 (Promega). An internal deletion of
the pMycluc was performed by the PCR amplification of a desired fragment using primers 5'-CGCTGAGTATAAAAGCCGGTTTTCGGGGCT-3'
and 5'-AGGCAGGAGGGGAGCCAGGGACGGCCGGGG-3' and ligation.
The 2,000-bp HindIII fragment of the resultant plasmid
was resubcloned into the HindIII site of pGL3
(pMyc
MEluc). pFGF4luc was generated by inserting the 4,300-bp
PCR-created fragment of 5' fgf4 promoter into the
KpnI site of pGL3. The primers used were
5'-GGTCCGCACAAAGGGCCACACACTGCTAGGCTGAT-3' and
5'-TTGTACCGCGCGCCCAGCCCTCCGGAGCAGTGGTATA-3. pFGF4
luc was generated by deletion of the 600-bp EcoRI-Asp718
fragment from pFGF4luc. Transient transfection assay and luciferase
assay were performed as described previously (24).
DNA binding site selection and EMSA.
MBP-MAZR(251-641) was
constructed by inserting the 1,800-bp PCR-created fragment into the
EcoRI-SalI site of pMAL-c2 (New England Biolabs).
Primers used were 5'-CGAATTCCCTAATGTGGCATCCAG-3' and M13-20.
Expression of MBP-MAZR(251-641) in Escherichia coli was
performed as described previously (24), but with a minor modification. Briefly, a chimeric protein bound on the amylose resin
was eluted with buffer (20 mM Hepes-NaOH [pH 7.9], 100 mM NaCl, 4 mM
MgCl2, 1 mM EDTA, 20% glycerol, 1 mM dithiothreitol, 1 mM
phenylmethylsulfonyl fluoride, and 0.1% NP-40) containing 10 mM
maltose. DNA binding site selection assay was performed as described
previously (36). The oligonucleotide probe used for the EMSA
contained both the G-rich element and the MARE and had the following
sequence:
5'-GATCCTCTGTGGGGGGGGGACACTCGAAAGGAGCTGACTCATGCTAG-3' (each recognition element indicated by underlining). An
oligonucleotide probe containing the G-rich element and a mutated MARE
had the following sequence:
5'-GATCCTCTGTGGGGGGGGGACACTCGAAAGGATCTTACTTATGCTAG-3' (mutations indicated by underlining).
In vivo pull-down assay.
The expression plasmid of GST-MAZR
was generated by inserting the 1,800-bp BamHI fragment of
pEF-fMAZR into the BamHI site of pBosGST (23).
Pull-down assays were performed as described previously
(23). Precipitated Bach2 was visualized by immunoblot analysis using anti-F69-2 antibody (36).
Preparation of antisera.
The expression plasmid of MBP-fused
MAZR (amino acids 490 to 641) was generated by inserting the
PCR-created fragment into the EcoRI and SalI
sites of pMAL-c2. The primers used were
5'-GGAATTCAGTGAGGGGCCCAGCAACTT-3' and T7. Expression and
purification of MBP-fused MAZR (amino acids 490 to 641) were carried
out as described above. The purified fusion protein was used to
immunize two Japanese White rabbits by an adjuvant system (RIBI
Immunochem Research, Inc.).
Nucleotide sequence accession number.
The nucleotide
sequence data reported in this paper will appear in the DDBJ, EMBL, and
GenBank nucleotide sequence databases with the accession number
AB029397.
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RESULTS |
Isolation of a cDNA encoding a Bach2-associated factor.
We
searched for a protein molecule(s) which associates with the BTB/POZ
domain of Bach2, by using a yeast two-hybrid screen. The yeast cell
Hf7c was transformed with a 17-dpc mouse embryo cDNA library (2 × 108 CFU) along with a bait plasmid that expressed a fusion
protein of the BTB/POZ domain of Bach2 and GBD. Positive transformants were selected for His autotrophy, and three positive cDNA clones were
isolated. After DNA sequencing, one of them was found to encode a
BTB/POZ domain in the N terminus and seven
C2-H2 type Zn finger domains in the C-terminal
end (Fig. 1A). No preceding in-frame stop
codon was noted within the 5' region of this cDNA. We tentatively
assigned the first methionine codon in this clone as an initiation
codon (Fig. 1A) because BTB/POZ domains are usually located at the N
termini of proteins. The nucleotide sequence around the putative
initiation ATG codon matches the translation initiation site consensus
sequence reported by Kozak (26). The open reading frame
encodes a predicted protein of amino acid residues with a calculated
molecular mass of 69,034 Da (Fig. 1A). We refer to it as MAZR (see
below).




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FIG. 1.
Cloning and structure of MAZR. (A) Nucleotide sequence
and deduced amino acid sequence of mouse MAZR cDNA. The BTB/POZ domain
is indicated by the opened box. The Zn finger domains and the Cys and
His residues in these domains are indicated by the thick lines and
circles, respectively. The underlined ATG is a putative initiation
codon. (B) Comparison of the BTB domains of mod (mdg4), GAGA factor,
Tramtrack, Bach1, Bach2, ZF5, and BCL6. Boxes indicate amino acids
conserved among at least four proteins. The Gly- and Ala-rich sequence
within the BTB domain of MAZR is indicated below. (C) Schematic
comparison of MAZR, its alternative form, and MAZ. (D) Nucleotide and
amino acid sequences of the alternative form of MAZR. Junctions of the
alternative exon are indicated with arrowheads. (E) Comparison of mouse
and human MAZR. Exons for human MAZR were predicted from the genomic
sequence (DDBJ accession no. AC005003), and were used to deduce the
amino acid sequence.
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The BTB/POZ domain encoded by this clone is distinct from those of
other BTB/POZ proteins in that a glycine- and alanine-rich
short
sequence was inserted into its middle (Fig.
1B). This inserted
sequence
might confer some specific function to this domain. Among
the Zn finger
domains, the second to the sixth fingers show 72%
homology to those of
MAZ (Fig.
1C) (
5,
22,
38). MAZ was
identified as a
regulatory factor that binds to a G-rich element
within the promoter
region of the c-
myc gene. The similarity of
the Zn fingers
of MAZ and MAZR suggests the possibility that MAZR
also recognizes a
G-rich element through these Zn finger motifs
(described below). We
also found an alternative form of MAZR during
expression analyses by
reverse transcription-PCR (data not shown).
A 73-bp alternative exon
was inserted into the boundary between
exons which encode the sixth and
the seventh Zn finger domains,
respectively. This insertion results in
a shifting of the reading
frame, creating an in-frame termination codon
in the seventh Zn
finger exon (Fig.
1D). Therefore, this alternative
form lacks
the seventh Zn finger and thus has a calculated molecular
mass
of 57,996
Da.
A search for related sequences in the databases identified a
human genomic DNA sequence (GenBank accession number
AC005003)
that covers a 198-kbp region. Four segments within this sequence
showed significant homology to mouse MAZR cDNA, indicating that
these
segments are exons for the human MAZR gene. Predicted human
MAZR cDNA
showed 91% identity with mouse MAZR cDNA. At the amino
acid level,
they showed 99% identity (Fig.
1E). The
AC005003 sequence is derived
from chromosome 22 (22q12-14). This chromosomal
localization was
confirmed by chromosome mapping using the human
radiation hybrid panel
(data not
shown).
Expression profile of MAZR overlaps that of Bach2.
To shed
light on the biological function of MAZR, its
expression profile was determined by RNA blot analyses (Fig.
2A). High levels of MAZR mRNA were
detected in thymus, fetal liver (13.5 dpc), and bone marrow. In
addition to hematopoietic tissues, various other tissues expressed MAZR
mRNA at much lower levels. Since Bach2 shows a stage-specific
expression during B-cell differentiation, we compared the expression of
MAZR and Bach2 in various cell lines representing each stage of B-cell
differentiation (Fig. 2B). Expression of MAZR was highly abundant in
the early stages of B cells (i.e., pro- and pre-B-cell lines). These
results suggest that MAZR regulates gene expression in hematopoietic
cells and that MAZR cooperates with Bach2 during early stages of B-cell
differentiation.

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FIG. 2.
Expression profile of MAZR. RNA blot analyses with total
RNAs derived from mouse tissues (A) and B-cell lines representing
various developmental stages (B). Positions of 28S rRNA are indicated
by lines.
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To test further the possible function of Bach2 and MAZR in development,
we investigated the expression of MAZR and Bach2 during
embryogenesis
by whole-mount in situ hybridization. Interestingly,
MAZR and Bach2
mRNAs were both expressed strongly in the limb
buds of 10.5-dpc mouse
embryos. Both MAZR and Bach2 mRNA showed
broad patterns of expression
within the limb buds (Fig.
3A, B,
E, F,
H, and I). However, their expression increased toward the
edges of limb
buds, where the AER was located. Expression of FGF4
mRNA, a marker for
AER, was confined to the AER (Fig.
3C, G, and
J) but contained within
the Bach2- and MAZR-expressing regions.
These observations suggest
that, in addition to cooperating in
B-cell differentiation, Bach2 and
MAZR cooperate in limb bud development.
Besides being expressed in the
limb buds, MAZR mRNA was expressed
strongly in the midbrain region.

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FIG. 3.
Whole-mount in situ hybridization on 10.5-dpc mouse
embryos with MAZR, Bach2, and FGF4 cRNA probes. (A to D) Lateral views
of 10.5-dpc embryos hybridized with MAZR, Bach2, FGF4 cRNA probes, and
sense probe, respectively. Limb buds are indicated with arrow heads. (E
to J) Higher magnifications of the forelimbs (E to G) and hindlimbs (H
to J) revealing MAZR, Bach2, and FGF4 expressions, respectively.
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In vivo interaction between MAZR and Bach2.
We verified an
interaction between MAZR and Bach2 by the in vivo pull-down assay.
GST-fused MAZR was transiently expressed along with Bach2 in the human
embryonic kidney cell line, 293T, and was pulled down by glutathione
beads. The precipitates were separated on a sodium dodecyl
sulfate-polyacrylamide gel and examined for the presence of Bach2 by
immunoblot analysis (Fig. 4A and B).
Bach2 could be precipitated with GST-MAZR (Fig. 4B, lane 4) but not
with the GST tag alone (Fig. 4B, lane 3). These results indicate that
MAZR indeed interacts with Bach2 in mammalian cells as well as in yeast
cells. Interestingly, when FLAG-tagged MAZR was expressed along with
GST-MAZR, it was also precipitated together with GST-MAZR (Fig. 4C),
indicating that MAZR could form a homomeric complex.

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FIG. 4.
In vivo interaction between MAZR and Bach2. (A)
Schematic representation of GST-fused MAZR and FLAG-tagged MAZR
(fMAZR). Dotted box indicates the FLAG epitope. (B and C) GST-MAZR,
Bach2 and fMAZR were transiently expressed in 293T cells in various
combinations as indicated. Whole-cell extracts were incubated with
glutathione beads and precipitates were analyzed by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and immunoblotting using
anti-Bach2 ( F69-2 serum) (B) and anti-FLAG (C). Positions of
molecular markers (116 and 83 kDa) are shown on the left. G, GST; G-M,
GST-MAZR.
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MAZR interacted with Bach2 through BTB/POZ domain.
To examine
the specificity of the association between MAZR and Bach2, we attempted
to define regions that are involved in the interaction by the
two-hybrid system. For this purpose, the S. cerevisiae
strain SFY526, which carries a LacZ reporter gene with binding sites
for GAL4, was used. Several domains of MAZR and Bach2 were fused to the
GBD or the GAD (Fig. 5) and were
expressed in yeast cells. Interactions between these chimeric proteins
were determined by measuring the LacZ activities. As shown in Table 1, control experiments using GBD plasmid
and GAD424, GAD-MAZR, GAD-MAZR/BTB, or GAD-MAZR
BTB did not reveal
any LacZ reporter activity. Similarly, another set of control
experiments using GAD424 and GBD-MAZR/BTB or GBD-Bach2/BTB showed no
LacZ activities. GBD-Bach2/bZip was found to activate the LacZ reporter
expression (1.4 Miller units). This might be due to a cryptic
transactivation domain present on Bach2. Significant enhancement of
LacZ activity was observed when yeast cells were transformed with
GBD-Bach2/BTB and GAD-MAZR or GAD-MAZR/BTB. GAD-MAZR
BTB (lacking the
BTB/POZ domain) did not exhibit association activity with
GBT-Bach2/BTB. Taken together, these data suggest that interaction
between MAZR and Bach2 is mediated primarily by their BTB/POZ domains.
Besides this interaction, MAZR appeared to interact with the bZip
domain of Bach2, but at a lower affinity than with BTB domain of Bach2 (GAD-MAZR and GBD-Bach2/bZip). Interestingly, MAZR formed a homomeric complex more efficiently than it formed a heteromeric complex with
Bach2 in yeast cells (compare GAD-MAZR and GBD-MAZR/BTB with GAD-MAZR
and GBD-Bach2/BTB). In addition to interacting with Bach2, MAZR
interacted with Bach1 (GAD-MAZR and GBD-Bach1/BTB).

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FIG. 5.
Schematic representation of GAL4 fusions. MAZR, Bach2,
and Bach1 proteins were fused to the GBD and the GAD.
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MAZR recognizes G-rich sequences in vitro and activates
c-myc promoter.
To gain clues regarding target genes
regulated by MAZR and Bach2, we determined the optimal recognition
element of MAZR by the DNA-binding site selection experiment. A
C-terminal end of MAZR including seven Zn fingers was expressed in
E. coli as an MBP fusion protein [MBP-MAZR(251-641)].
After three rounds of selection by EMSA and PCR amplification, bound
DNA fragments were subcloned and sequenced. As tabulated in Fig.
6, MAZR bound to G-rich sequences. As
expected from the similarity in their Zn finger domains, the binding
site consensus for MAZR is highly related to that of MAZ (Fig. 6,
below). Thus, MAZR and MAZ likely regulate a similar set of target
genes.

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FIG. 6.
Selection of G-rich sequences by MAZR. The tally was
compiled by aligning sequences of 39 independent clones selected by
MBP-MAZR(251-641). The n for each position varies, because
whenever nonrandom portions of the DNA overlapped with the aligned
sequence, these sequences were excluded from the analysis. The
consensus site is shown below the tally. The consensus sequence for MAZ
binding (37) is also shown below the tally.
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One of the target genes of MAZ is c-
myc. A majority of
c-
myc transcripts initiate at its P2 promoter, which
contains the G-rich
sequence elements ME1a1 and ME1a2 (Fig.
7A). MAZ represses P2
promoter activity
through binding to ME1a2 (
19). We compared
effects of MAZR
and MAZ on the c-
myc promoter activity in a transfection
assay using the pro-B-cell line 18-81. As shown in Fig.
7B, MAZR
strongly activated the expression of the c-
myc promoter
plasmid
in a dose-dependent manner, whereas MAZ showed only marginal
effects.
Unexpectedly, internal deletion of both ME1a1 and ME1a2
elements
from the P2 promoter did not abolish the effect of MAZR (Fig.
7A and C). Perhaps the presence of other G-rich sites in
c-
myc promoter (Fig.
7A) compensated for the loss of ME1a1
and ME1a2
elements. These results indicated that, even though MAZ and
MAZR
possess similar DNA binding Zn finger domains, they are endowed
with distinct biochemical functions. MAZR may be a physiological
transcriptional activator of the c-
myc gene in B cells.

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FIG. 7.
MAZR transactivates the c-myc promoter. (A)
Schematic structures of pMycluc and pMyc MEluc reporters. (B and C)
Increasing amounts of MAZR and MAZ expression plasmid (0.1 and 1 µg)
were transfected into 18-81 B-cell lines along with the pMycluc,
pRGBP4, or pMyc MEluc reporter (1 µg) and an internal control
plasmid, pEF-SP (0.25 µg). The results are the means of five
independent transfections.
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MAZR functions as an unusual type of transcription factor.
Having established that MAZR is a transcription activator, we next
examined various MAZR derivatives to locate the transactivation domain
of MAZR using the c-myc reporter gene. As shown in Fig. 8A, N-terminal deletion mutants of MAZR
were expressed in 18-81 cells. Interestingly, deletion of BTB domain
from MAZR (fMAZR
BTB) reduced its transcription activity, whereas
deletion of most of the region N-terminal to the Zn finger domains
abolished its activity. To test whether the N-terminal region is a
transactivation domain, we utilized the GAL4 fusion system (Fig. 8B).
Chimeric proteins of several portions of MAZR fused to the GBD were
expressed in 18-81 cells along with the reporter plasmid which contains
four copies of the GAL4 binding sites. As a positive control,
GAL-p45(1-272) which contains the transactivation domain of NF-E2 p45
(33) was also compared. GAL-p45(1-272) strongly activated
expression of the reporter gene, so that the level was about 250-fold
greater (Fig. 8B, row 9). In contrast, all of the MAZR fusion proteins showed only very weak activity (Fig. 8B, rows 2 to 8). Most
importantly, the N-terminal region of MAZR, including the BTB/POZ
domain, did not show any transcriptional activity (Fig. 8B, rows 3, 5, and 6). Expression levels of these fusion proteins were determined by
Western blotting, as shown in Fig. 8C. These intriguing results suggested that MAZR functions not as a typical transactivator but as
another type of transcription factor, like GAGA, which is also a
BTB/POZ factor (see Discussion).

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FIG. 8.
Examination of MAZR transactivation domain. (A)
Schematic representation and transcriptional activity of MAZR deletion
mutants. The experiment procedure is described in the legend of Fig. 7.
(B) Schematic representation and transcriptional activity of portions
of MAZR fused to the GBD. Each expression plasmid (1 µg) was
introduced into 18-81 cells along with pG4TATAluc reporter (1 µg) and
pEF-SP (0.25 µg) as an internal control. GAL-p45(1-272) was described
previously (33). (C) Western blot analysis of QT6 whole-cell
extracts expressing GAL4-MAZR fusion proteins using anti-GAL4 DBD
antibody (Upstate Biotechnology). Molecular size markers are shown to
the left. ( ), mock transfection.
|
|
Synergistic transactivation of fgf4 gene expression by
MAZR and Bach2.
The above results suggest that a target gene(s)
regulated by MAZR and Bach2 would contain both the G-rich sequence and
MARE in its regulatory region. We searched for genes with such
regulatory sequences in the genomic database using Genetyx Mac
software. Of several candidate genes (data not shown), the
fgf4 gene was found to contain multiple putative
MAZR-binding sites and a single MARE in its 5' regulatory region (shown
in Fig. 9A). It should be noted that FGF4
plays an important role in the development of limb buds, along with
FGF2, -8, and -10 (29). The presence of these clustered
binding sites, as well as the expression profiles (Fig. 3), provoked us
to examine regulatory roles for MAZR and Bach2 in the expression of the
fgf4 gene. The fgf4 gene reporter plasmid, which
contains the 4,300-bp 5' promoter fused to the luciferase gene, was
created (Fig. 9A). The fgf4 reporter plasmid was introduced
into NIH3T3 cells along with expression plasmids of MAZR, Bach2, and
its partner MafK. MAZR alone or Bach2 or MafK alone slightly activated
the expression of the reporter. In the presence of the Bach2-MafK
complex, MAZR enhanced the reporter gene expression synergistically
(Fig. 9B, lane 4). This enhancement was diminished by deletion of the
BTB/POZ domain of MAZR (MAZR
BTB) (Fig. 9B, lane 6), indicating that
this synergistic effect was mediated through the BTB/POZ domain of
MAZR. Deletion of the G-rich site and MARE in the 5' terminal end of
the fgf4 gene promoter (FGF4
luc) (Fig. 9A) slightly
reduced the synergistic activity between MAZR and Bach2 (Fig. 9B, right
panel). Such synergism between MAZR and Bach2 was not observed with the
pRGBP4 reporter plasmid (16) which contains only a minimal
TATA box promoter (Fig. 7C). Taken together, these data indicated that
a complex generated between MAZR and Bach2 functions as an activator of the fgf4 gene promoter. Transcription activation by the
MAZR-Bach2 complex is in clear contrast to functions of other BTB/POZ
proteins, most of which repress transcription (8, 12, 27).

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FIG. 9.
MAZR and Bach2 synergistically transactivate expression
of the fgf4 gene. (A) Schematic structure of the
fgf4 gene reporters and pRGBP4 (16), which served
as a negative control. (B and C) MAZR, Bach2, and MafK expression
plasmids (0.5 µg each) were transfected into NIH 3T3 cells along with
pFGF4luc and pFGF4 luc reporters (B) or the pRBGP4 reporter (C) (1 µg each) in the combinations indicated. The results are the means of
three experiments.
|
|
The synergistic activation of the FGF4

luc reporter by MAZR and Bach2
(Fig.
9B) could point to two mechanisms. First, three
AP-1-like sites
in the
fgf4 promoter (dotted boxes shown in Fig.
9A) may
compensate for loss of the MARE because Bach2 can recognize
an AP-1
site (
36). Second, only G-rich elements might be sufficient
to recruit Bach2 onto DNA, resulting in the synergistic activation.
To
test the second possibility, we investigated an interaction
between
MAZR and Bach2 on DNA by EMSA. The oligonucleotide probe
contained both
a G-rich element and a MARE (Materials and Methods).
Each factor was
transiently expressed in 293T cells and subjected
to
EMSA.
As shown in Fig.
10A, MAZR bound to the
probe efficiently, whereas Bach2 did not bind under the conditions
examined (Fig.
10A,
lanes 3 and 4). Binding of MAZR was competed with a
cold oligonucleotide
DNA containing only a G-rich site (Fig.
10A, lanes
5 and 6), verifying
its site-specific binding. Coexpression of MAZR and
Bach2 resulted
in formation of another distinct band with slower
mobility (Fig.
10A, lane 5). Formation of this complex was inhibited by
specific
antibodies against Bach2 or MAZR (Fig.
10A, lanes 9 and 10),
showing
that it contained both MAZR and Bach2. This complex was
specifically
competed out by a cold G-rich oligonucleotide but not by a
MARE
oligonucleotide (Fig.
10A, lanes 6 and 7) (molar excess,
100-fold).
Furthermore, an interaction between MAZR and Bach2 on DNA
was
also observed in EMSA using a probe which contained the G-rich
site
and a mutated MARE (Fig.
10B). Taken together, these results
indicated
that Bach2 associated with MAZR on a G-rich site of
probe DNA and that
MARE is not critical for their association.

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FIG. 10.
Association between MAZR and Bach2 on DNA. (A) EMSA was
carried out with the oligonucleotide probe containing both the G-rich
element and the MARE. Lane 1, empty; lane 2, mock transfection; lanes 3 through 10, whole-cell extracts from 293T cells transiently expressing
Bach2 (lane 3), MAZR (lane 4), and MAZR and Bach2 (lanes 5 to 10) were
prepared and subjected to EMSA. Cold competitor DNAs, containing either
G-rich site or MARE (lanes 6 and 7, respectively), were added at
100-fold molar excess prior to addition of the radiolabeled probe. The
antibodies used were a control preimmune (PI) rabbit serum (lane 8),
anti-Bach2 (lane 9), and anti-MAZR (lane 10). The asterisk indicates an
unknown binding complex in rabbit serum. (B) EMSA of whole-cell
extracts of 293T cells expressing neither Bach2 nor MAZR (lane 2),
Bach2 (lane 3), MAZR (lane 4), or Bach2 and MAZR (lane 5) was carried
out with the oligonucleotide probe carrying the G-rich element and the
mutated MARE. Lane 1 was empty. The arrowheads and the arrows indicate
MAZR and MAZR-Bach2 complexes, respectively.
|
|
To evaluate transcriptional activity of MAZR-Bach2 complex, we carried
out a mammalian two-hybrid assay (Fig.
11). When expressed
individually,
GAL-MAZR showed no effect on the GAL4-dependent
reporter gene
expression, but GAL-Bach2 repressed transcription.
Thus, these two
factors lacked transcription activation potential
on their own.
However, simultaneous expression of the GAL-MAZR
and nonfusion Bach2
resulted in activation, indicating that MAZR-Bach2
complex acquired
transactivation activity.

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FIG. 11.
Mammalian two-hybrid assay revealing transcriptional
activity of MAZR-Bach2 complex. (A) GAL4 fusion and nonfusion factors
used in the assay. (B) Expression plasmids (1 µg) were introduced
into 18-81 cells in the combinations indicated along with pG4TATAluc
reporter (1 µg) and pEF-SP (0.25 µg) as an internal control.
|
|
 |
DISCUSSION |
The BTB/POZ domain appears to play diverse roles in mediating
interactions among proteins that are involved in transcription regulation, chromatin structures, and cytoskeleton organization. In
this study, we have identified a new BTB/POZ transcription factor,
MAZR, which interacts with Bach2 through respective BTB/POZ domains.
The significance of the results is twofold. First, MAZR was found to be
a strong transactivator of c-myc promoter whose activity was
independent of the presence of a transcription activation domain.
Second, Bach2, which has been regarded as a transcription repressor,
functions as a part of the transcription activating complex on certain
promoters like the fgf4 gene by interacting with MAZR.
Protein-protein interaction mediated by the BTB/POZ domain was shown to
play critical roles in both of the two aspects.
An increasing number of BTB/POZ proteins have been identified and
characterized; most of these proteins form homo- and/or hetero-oligomers through their BTB/POZ domains (4, 41).
However, the significance of such interactions in transcription
regulation has remained unclear. Isolation of MAZR allowed us to
address this issue. The results of quantitative two-hybrid assays and EMSA showed that MAZR regulates gene expression as both homomeric and
heteromeric complexes (Table 1 and Fig. 10). The central question raised by the present results is how MAZR activated transcription in
the absence of transcription activation domain. Considering the recent
reports regarding BTB/POZ domain proteins, one of the interesting
possibilities is that MAZR functions as an architectural transcription
factor. One of the most-characterized BTB/POZ domain proteins is
Drosophila GAGA factor. GAGA factor binds to regulatory DNA
sequences that contain multiple GAGA sites by generating multimers through its BTB/POZ domain. Electron microscopy observations revealed that target DNAs wrap around such a GAGA multimer (21),
indicating its structural role in gene regulation. Another interesting
example in this line is Bach1. Bach1-MafK heterodimer generates a
higher-order complex through the BTB/POZ domain of Bach1 (17,
42). This resulting higher-order complex binds to target DNA
sequences with multiple MAREs, generating DNA loops (42).
These observations suggest that BTB/POZ domain transcription factors
regulate transcription as architectural factors (42). In
this sense, it should be noted that both c-myc and
fgf4 promoters contain multiple potential target sites for
MAZR. Thus, it is highly likely that binding of multimers of MAZR can
generate topological changes within the promoter regions. The observed
dependence on the BTB/POZ domain is consistent with this idea.
Structural changes induced by binding of architectural factors may
directly or indirectly lead to activation of transcription.
The role of Bach2 as an integral part of the activating complex on the
fgf4 promoter was unexpected because previous results implicated Bach2 as a transcriptional repressor. For example, Bach2
represses expression of the IgH gene through MARE in its 3' enhancer in
B cells (32). The mechanistic role for Bach2 in the
transactivating complex is still unknown. One possibility is that Bach2
carries a transcription activation domain whose activity is manifested
under specific contexts. This is supported by the fact that the
GBD-Bach2/bZip fusion protein induced LacZ activity in yeast cells
(Table 1). The results of a mammalian two-hybrid assay (Fig. 11) are
also consistent with this idea. Alternatively, binding of Bach2 to MAZR
may induce further structural changes of regulatory regions as
suggested above. Of course, these two possibilities are not mutually
exclusive and further analysis is required to understand the detailed
mechanism. Thus far, most of the BTB/POZ domain transcription factors
have been found to repress transcription (8, 12, 27).
However, the results presented here suggest that some of them may also
participate in transcription activation by interacting with other
factors through BTB/POZ domains.
c-myc plays important roles in cell proliferation and
differentiation. As such, its expression must be tightly regulated. Regulation of c-myc occurs at multiple levels, including
initiation and termination of transcription, and attenuation of
transcription. MAZ is implicated in repression of the c-myc
gene (19). There are several transcription factors, such as
-catenin-Tcf-4 complex, that activate the c-myc
expression (15). Our results, including high levels of
expression observed in hematopoietic tissues, suggest MAZR is a
candidate for activators of c-myc in hematopoietic cells. Because MAZR and MAZ possess similar Zn fingers and DNA recognition specificities, c-myc may be regulated by competing
activities of transcription factors that target similar
cis-DNA elements. Competition between MAZ and MAZR is
expected to confer strict regulation of gene expression. Previous
reports indicated that the ME1a1 and ME1a2 elements are the target of
MAZ (19, 25). However, our results suggest that MAZR
regulates transcription through binding to other G-rich elements
scattered within the promoter region as well. Further studies are
necessary to identify critical sites for MAZR and/or MAZ effects. In
any case, the involvement of BTB/POZ-Zn finger proteins in development
and cancer (2) makes MAZR an interesting candidate for being
an upstream regulator of the c-myc gene.
The observed synergistic activity of MAZR and Bach2 appears
biologically relevant. Besides B lymphoid cells, we found by
whole-mount in situ hybridization that Bach2 and MAZR are coexpressed
in limb buds of 10.5-dpc mouse embryos (Fig. 3). The limb development requires a complex program of events which is directed by a number of
signaling molecules, such as FGFs and Sonic hedgehog, whose expressions
are under strict regulation (29). The present results suggest that gene regulation in limb buds utilizes a combinatorial code
of Bach2 and MAZR. One of the potential targets in limb buds is
fgf4. However, these two proteins are not the sole
determinants of fgf4 expression, since Bach2 and MAZR are
expressed outside the AER as well.
If a combinatorial usage of BTB/POZ domain transcription factors is
widespread among higher eukaryotes, BTB/POZ domains will shed a novel
light on cancer etiology. Several BTB/POZ transcription factors have
been implicated in malignant transformation (9, 41). Ectopic
expression (e.g., BCL6) or generation of fusion proteins (e.g., PLZF)
of BTB/POZ domain factors could negatively influence some important
combinatorial codes of transcription factors within a cell, resulting
in deregulated gene expression. Because of its potential involvement in
c-myc regulation, MAZR is an interesting candidate for being
a target in hematopoietic cells.
 |
ACKNOWLEDGMENTS |
We thank K. Yokoyama (RIKEN) for plasmids and discussion, G. Martin (University of California) for plasmids, and T. Tanaka (Tsukuba
University) for discussion. We also thank K. Furuyama for database
searching, R. Matano for preparation of an antibody, and M. Mochita for
construction of plasmids.
This work was supported by grants-in-aid from the Ministry of
Education, Science, Sports, and Culture, an RFTF grant from the
Japanese Society for the Promotion of Sciences, and grants from Naito
Foundation, Uehara Memorial Foundation (to K.I.), Mochida Memorial
Foundation, and Yamanouchi Foundation for Research on Metabolic
Disorders (to A.K.).
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Department of
Biochemistry, Hiroshima University School of Medicine, Kasumi 1-2-3, Hiroshima 734-8551, Japan. Phone: 81-82-257-5135. Fax: 81-82-257-5139. E-mail: igarak{at}mcai.med.hiroshima-u.ac.jp.
 |
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Molecular and Cellular Biology, March 2000, p. 1733-1746, Vol. 20, No. 5
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Copyright © 2000, American Society for Microbiology. All rights reserved.
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