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Molecular and Cellular Biology, April 2000, p. 2774-2782, Vol. 20, No. 8
0270-7306/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Conservation of Glutamine-Rich Transactivation
Function between Yeast and Humans
Dominik
Escher,
Morana
Bodmer-Glavas,
Alcide
Barberis, and
Walter
Schaffner*
Institut für Molekularbiologie,
Universität Zürich, CH-8057 Zürich, Switzerland
Received 1 October 1999/Returned for modification 25 October
1999/Accepted 17 December 1999
 |
ABSTRACT |
Several eukaryotic transcription factors such as Sp1 or Oct1
contain glutamine-rich domains that mediate transcriptional activation. In human cells, promoter-proximally bound glutamine-rich activation domains activate transcription poorly in the absence of acidic type
activators bound at distal enhancers, but synergistically stimulate
transcription with these remote activators. Glutamine-rich activation
domains were previously reported to also function in the fission yeast
Schizosaccharomyces pombe but not in the budding yeast
Saccharomyces cerevisiae, suggesting that budding yeast lacks this pathway of transcriptional activation. The strong
interaction of an Sp1 glutamine-rich domain with the general
transcription factor TAFII110 (TAFII130), and
the absence of any obvious TAFII110 homologue in the
budding yeast genome, seemed to confirm this notion. We reinvestigated
the phenomenon by reconstituting in the budding yeast an
enhancer-promoter architecture that is prevalent in higher eukaryotes
but less common in yeast. Under these conditions, we observed that
glutamine-rich activation domains derived from both mammalian and yeast
transcription factors activated only poorly on their own but strongly
synergized with acidic activators bound at the remote enhancer
position. The level of activation by the glutamine-rich activation
domains of Sp1 and Oct1 in combination with a remote enhancer was
similar in yeast and human cells. We also found that mutations in a
glutamine-rich domain had similar phenotypes in budding yeast and human
cells. Our results show that glutamine-rich activation domains behave
very similarly in yeast and mammals and that their activity in budding
yeast does not depend on the presence of a TAFII110 homologue.
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INTRODUCTION |
The expression of protein-coding
genes in eukaryotes depends on DNA-binding transcription factors that
typically have at least two distinct domains: one domain responsible
for specific DNA recognition and one responsible for transcriptional
activation (5, 27). According to their predominant amino
acid composition, activation domains have been classified mainly into
acidic, proline-rich, and glutamine-rich domains (for reviews, see
references 28 and 40). When
tethered to DNA, these classes of activation domains possess different
biological properties in their ability to influence gene expression
(38). Acidic activation domains rich in acidic and
hydrophobic amino acids, such as those found in VP16 or Gal4p proteins,
are the most versatile activators, and they stimulate transcription
when bound to DNA from proximal and distal enhancer positions in all
eukaryotes. Proline-rich activation domains, e.g., those of AP-1 or
CTF/NF1, generally activate from proximal and, albeit to a much reduced
extent, from distal positions. Glutamine-rich activators like Sp1 or
Oct1 on their own fail to activate transcription from a remote enhancer
position, but they stimulate gene expression in response to remote
enhancers when bound in close proximity to the TATA box in human cells
(38). The same glutamine-rich activation domains were
reported to be active in the fission yeast Schizosaccharomyces
pombe when tethered to a proximal regulatory sequence
(35). In contrast, with the budding yeast
Saccharomyces cerevisiae, we and others have reported that
glutamine-rich activation domains of the mammalian transcription
factors Sp1, Oct1, and Oct2 or full-length Sp1, when tethered to DNA,
are transcriptionally inactive at either proximal or remote position
when tested on their own (24, 32).
In order to stimulate transcription, activation domains have to
interact with components of the transcriptional complex (for reviews,
see references 2 and 30). For
Sp1, it has been shown that the two glutamine-rich activation domains
directly interact with TAFII110, a component of the general
transcription machinery (20). TAFII110 is
present in higher eukaryotes (e.g., as dTAFII110 in
Drosophila and as hTAFII130 in humans), but no
homologue could be found in the genome of the budding yeast S. cerevisiae. This finding offered a straightforward explanation for
the seeming inability of the Sp1 glutamine-rich domains to activate
transcription in the budding yeast.
Another important observation is that the typical arrangement of
regulatory sequences controlling gene expression in yeast differs from
that of higher eukaryotes. In metazoans, binding sites for
transcription factors are often found in close proximity to the
transcriptional start site and also at a considerable distance. Proximal sites may contain binding sites for Sp1 and/or Oct1
(22). Distal enhancer elements can influence gene expression
when positioned upstream, downstream, or even as part of an intron
within the transcription unit (1; for a review, see
reference 37). In the budding yeast, probably due to
space constraints and the almost complete lack of introns, the majority
of genes are controlled by a few binding sites for transcription
factors, termed upstream activating sequences, which are located close
to the TATA box.
To see whether enhancer or promoter structure could influence the
activity of glutamine-rich domains in the budding yeast, we
reconstituted a metazoan-like regulatory structure in the yeast chromosomal context by introducing transcription factor binding sites
both in close proximity to the TATA box and at a remote upstream
enhancer position. Under these conditions, we observed that the
glutamine-rich activation domains of mammalian Sp1 or Oct1 and yeast
Snf5p readily contributed to gene expression in yeast, in a manner
similar to their behavior in mammalian cells tested in parallel. These
results indicate that there is no functional difference for
glutamine-rich activation domains in stimulating gene expression in
yeast and mammalian cells, irrespective of the lack of
TAFII110 in S. cerevisiae.
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MATERIALS AND METHODS |
Plasmids and yeast strains.
The yeast-integrating LacZ
reporter plasmid pENH200 (see Fig. 2A) was derived via a combination of
pJP158 (3), pDE200, and pDEYS2 (13). This
resulted in a URA3-marked integrating vector that contains
the LacZ gene under the control of two Lex, and three Gal4 binding
sites 40 and 240 bp upstream of the GAL1 TATA box,
respectively. The reporter plasmids pENH400 and pENH800 are derived
from pENH200 and have 400- and 800-bp spacer sequences between the two
proximal Lex binding sites and the three Gal4 binding sites,
respectively. The integrating yeast plasmid pMG1, with switched Lex and
Gal4 binding sites, was derived from pENH200 via replacement of the two
proximal Lex (SacII-XbaI) and the three distal
Gal4 (AflII-XmaI) sites with a double-stranded
oligonucleotide that encodes two synthetic Gal4 and three Lex binding
sites and possesses the corresponding SacII-XbaI
and AflII-XmaI overhangs, respectively. The
TATA-less TRP3 reporter plasmid pENH200TL was derived by
subcloning the regulatory cassette that contains three Gal4 and two Lex
binding sites (AflII [blunt ended]-XbaI) from pENH200 into the XhoI-filled-in XbaI sites
immediately upstream of the TATA-less Trp promoter of pAB135, a
URA3-integrating LacZ reporter vector.
As a source strain for the integration of the yeast reporter plasmids,
we used JPY9 (MAT
ura3-52 his3
200 leu2
1 trp1
63 lys2
385 gal4
11) (3). All reporter plasmids
(pENH200, pENH400, pENH800, pENH200TL, and pMG1) were linearized at the
ApaI site in the URA3 gene and were integrated
into the yeast genome, resulting in YENH200, YENH400, YENH800,
YENHTL200, and YMG1, respectively. Correct, single integration was
confirmed by genomic PCR analysis, and three independent yeast
transformants from each integration were tested and compared in
functional assays.
The yeast expression vectors encoding various Lex fusion proteins were
derived from pDE101, a Trp1-marked ARS/CEN vector derived
from pJP228
(
3) coding for the Lex (amino acids 1 to 202)-Gal4
(amino
acids 58 to 97) fusion protein under the control of the
strong,
constitutive yeast actin promoter. The Gal4 (amino acids
58 to 97)
moiety was released by
XbaI-
SalI digestion and
was replaced
by different Sp1 or Oct1 fragments derived by PCR (Sp1Q1
amino
acids 50 to 161, NRTVSGGQYVVAAAPNLQNQQVLTGLPGVMPNIQYQVIPQFQT VDGQQLQFAATGAQVQQDGSGQIQI
I PGANQQI I T NRGSGG N I IAAMPNLLQQAVPLQGLANNVLSGQT;
Sp1Q2 amino
acids 257 to 403, SSGTNSQGQ T PQRVSGLQGSDALN IQQNQ TSGGS LQAGQQKEGEQNQQTQQQQI
LIQPQLVQGGQALQALQAAPLSGQTF T TQAISQE T LQNLQLQAVPNSG P I I I RTPTVGPNGQVSWQTLQLQNLQVQNPQAQ
TI T LAPMQGVS L;
and Oct1Q amino acids 175-269, DLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQF
I I SQTPQGQQG L LQAQNLQTQLPQQSQAN L LQSQPS I T LTSQPATPTRTIAATPIQTLPQSQS).
PCR of the different glutamine-rich activation domains was carried
out
on template as previously described (
24). Three individual
PCR-derived clones of each ligation were sequenced and then compared
by
functional assays. The section of the gene encoding the glutamine-rich
domain of Snf5 was cloned by PCR by using yeast genomic DNA as
a
template and oligonucleotides containing an
XbaI and
SalI overhang,
respectively, and annealed to
SNF5
at nucleotide positions 550
and 859. The PCR product was cloned into
XbaI/
SalI-digested pDE101,
resulting in
pDESNF5#15 (Lex-Snf5 amino acids 185 to 286). The
internal deletion (of
Lex-Snf5 amino acids 211-260) in the glutamine-rich
domain of Snf5
occurred fortuitously during cloning procedure,
and is designated
pDESNF5#9. The
GAL4 full-length yeast expression
vector is
driven by the yeast ADH promoter on a
HIS3-marked,
high-copy-number
(2µm)
plasmid.
Gene expression.
Gene expression in yeast was monitored by
using liquid
-galactosidase assays and were performed as previously
described (13). For reliable measurement of the low signals
obtained when the glutamine-rich activation domains were tested alone,
we routinely extracted whole-cell proteins as described below. All
assays were conducted with duplicate samples and were repeated at least
once. For HeLa cell experiments, cells were transfected as previously described (14). As a reporter plasmid, we used the OVEC
-globin system (42). Subsequent S1 nuclease mapping was
done as described (42).
EMSA and immunoblot analysis.
Yeast cultures were grown in
10 ml of selective media to an optical density at 600 nm of 1.5 and
then were harvested by centrifugation and resuspended in 1 ml of buffer
containing 20 mM HEPES (pH 7.5), 10% glycerol, and 0.45 M NaCl, then
were reharvested and resuspended in 0.1 ml of the same buffer
supplemented to 0.1 M phenylmethylsulfonyl fluoride and 1 M
dithiothreitol. From this step on, the samples were kept on ice. After
addition of an equal volume of glass beads, samples were vigorously
vortexed (5 × 30 s), and 0.1 ml of the same buffer was added
before an additional vortexing step (15 s). After a 10-min
centrifugation step at 4°C, supernatants were collected and used for
electrophoretic mobility shift assay (EMSA) experiments (approximately
2 to 6 µl) or for
-galactosidase assays according to standard
protocol. As a probe, we used a double-stranded, 32P-labeled oligonucleotide (5'
GCAGTGCTGTATATAAAACGAGTGGTTATATGTACAGTAG 3') that contains two
Lex binding sites. EMSA was performed as described (38).
Immunoblot analysis of the Lex-Sp1Q2 wild type and the different
mutants was carried out by using an anti-LexA antibody (Clontech). The
experimental procedure of the immunoblot was carried out as described
(13).
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RESULTS |
Glutamine-rich activation domains have a low activation potential
on their own, but strongly synergize with a distal enhancer in both
human and yeast cells.
To clarify the transcriptional activation
by glutamine-rich activation domains, we tested them in parallel in
both mammalian and in yeast cells. In human cells, such domains were
tethered to promoter-proximal binding sites, either on their own, or in combination with an enhancer. For this, we cloned the minimal glutamine-rich activation domains of Sp1 (Sp1Q1 and Sp1Q2, see Materials and Methods), Oct1 (Oct1Q), and Oct2 (Oct2Q) to the Gal4
DNA-binding domain (DBD) into a mammalian expression vector under the
control of the strong cytomegalovirus promoter (Fig. 1A, Transactivators). As reporter, we
used the
-globin gene, which was under the control of two Gal4
binding sites proximal to the TATA box, with or without a simian virus
40 (SV40) enhancer sequence in a downstream position (Fig. 1A,
Reporters). The different transactivators and reporters were
cotransfected into HeLa cells. Two days after transfection, we
quantified the transcript levels of reporter and reference genes.
In the absence of a distal enhancer, proximally bound glutamine-rich
activation domains showed a very low intrinsic activation potential
(Fig. 1B, lanes 2 to 6). The strongest activation domain (Sp1Q1, lane
3) was able to activate reporter gene transcription five- to sixfold
above that of Gal4 DBD alone (lane 2). However, transactivation by
Sp1Q1 was less than 5% of that mediated by the strong herpes simplex
activator VP16 fused to the Gal4 DBD (data not shown). A remotely
positioned SV40 enhancer by itself, without a proximally bound
transcription activation domain, activated
-globin expression only
weakly (lane 7). Binding of the Gal4 DBD (amino acids 1 to 93) in
combination with the SV40 enhancer stimulated the reporter gene
expression to some extent (lane 8), while a combination of proximal
transactivator and distal SV40 enhancer led to strong synergistic gene
activation (lanes 9 to 12). Quantification of reference and reporter
-globin expression revealed that the activity of a remote enhancer
was six- to sevenfold higher in concert with Sp1Q1 (lane 9), compared to the background by the Gal4 DBD alone (lane 8). The other tested glutamine-rich activation domains, Sp1Q2, Oct1, and Oct2, also synergized with the remote SV40 enhancer to yield three-, six-, and
fourfold-higher levels of activity (lanes 10 to 12), respectively. These results show that glutamine-rich activation domains in HeLa cells
possess a very low intrinsic activation potential, but in combination
with additional activators contribute to synergistic gene activation.
These data, which are in agreement with previous results
(38), were the basis for a direct comparison to the budding
yeast, where the same glutamine-rich activation domains were tested.
Unlike our previous study where we found no activity of glutamine-rich
domains in yeast (24), this time we used a promoter
architecture that more closely resembles that of higher eukaryotes by
introducing two proximal Lex sites and three distal enhancer binding
sites for Gal4p upstream of the TATA box (Fig. 2A). This LacZ reporter construct was
integrated into the genomic URA3 locus. We fused the Lex DBD
(amino acids 1 to 202) to the same glutamine-rich activation domains of
Sp1 (Lex-Sp1Q1 and Lex-Sp1Q2) and Oct1 (Lex-Oct1Q) as used in the HeLa
cell experiments. These effector plasmids were tested for their ability
to activate LacZ gene expression when bound proximally. The activity of
Lex fusion proteins, either alone or in combination with the remotely
bound Gal4p activator, was measured by the
-galactosidase assay
(Fig. 2B). All glutamine-rich activators when bound to the two proximal Lex binding sites were able to activate transcription to a low level
only (Fig. 2B, lanes 4 to 6), although significantly above basal
expression (lanes 1 to 3). This low expression was less than 5% of the
value seen with acidic activators such as Lex-VP16 or Lex-Gal4p (data
not shown).

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FIG. 1.
Glutamine-rich activation domains are dependent on a
distal enhancer in human cells. (A) HeLa cells were cotransfected with
expression plasmids where the DBD of Gal4 (amino acids 1 to 93) was
fused to glutamine-rich activation domains of Sp1, Oct1, or Oct2
(Transactivators), along with a reporter plasmid under the control of
two proximal Gal4 binding sites, with or without a distal SV40 enhancer
(Reporters). As an internal control, a reference plasmid expressing the
5'-truncated form of the -globin gene was cotransfected. (B) Total
RNA was harvested 2 days after transfection of HeLa cells, and S1
nuclease analysis was performed. Lanes 7 to 12, due to the stronger
reporter signals, were exposed for a shorter time than lanes 1 to 6. Quantification of the reporter signal (Rep.) relative to the
corresponding reference (Ref.) was carried out by using a
PhosphorImager. Without a distal enhancer, the glutamine-rich
activation domains stimulate reporter gene expression only slightly
above the background level (lanes 3 to 6 versus lanes 1 and 2). In
combination with the remote SV40 enhancer, the glutamine-rich
activation domains synergistically activated gene expression (lanes 9 to 12) when compared to the influence of the SV40 enhancer alone (lanes
7 and 8).
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FIG. 2.
Glutamine-rich activation domains stimulate
transcription from a chromosomally embedded reporter gene in yeast. (A)
Schematic drawing of the integrated yeast reporter. The promoter
architecture resembles that of a typical higher eukaryote. It contains
distant (three Gal4 binding sites) as well as proximal (two Lex binding
sites) regulatory elements upstream of the GAL1 TATA box. The reporter
was integrated at the chromosomal URA3 locus of S. cerevisiae. (B) The reporter strain was transformed with yeast
plasmids that express Lex fusion proteins to the Gal4 dimerization
domain (amino acids 58 to 97) as a negative control and the same
glutamine-rich activation domains of Sp1 (Q1 and Q2) and Oct1Q as
tested in HeLa cells (Fig. 1). Their ability to stimulate transcription
when bound to the proximal binding sites either alone or in combination
with a distal Gal4p activator was monitored. The factors containing a
glutamine-rich activation domain displayed a low intrinsic activation
potential when tested on their own (lanes 4 to 6), which was above the
background as determined by the Lex (lane 2) or Lex-Gal4 dimerization
domain alone (lane 3). The influence on reporter gene activation of the
distal Gal4p (lane 7) and the proximal glutamine-rich activation
domains (lanes 4 to 6) was more than additive when tested in
combination, i.e., they resulted in synergistic gene activation (lanes
10 to 12). As in the mammalian cells shown in Fig. 1, Sp1Q1 (lanes 4 and 10) was the strongest activation domain, followed by Oct1Q (lanes 6 and 12) and Sp1Q2 (lanes 5 and 11). (C) EMSAs were performed with total
yeast protein extracts derived from reporter strains that expressed
various Lex fusion proteins. A 32P-labeled oligonucleotide
duplex with two Lex binding sites was used as a probe. Extracts from
reporter strains without a Lex fusion protein did not reveal any
protein interaction with the oligonucleotide (lane 1). Lex alone (lane
2) produced a weaker bandshift than the other fusion proteins. Fusion
of the Gal4 dimerization domain to the Lex protein (lane 3) increased
the stability of the protein to interact with the oligonucleotide and
yielded a bandshift comparable to those of Lex fused to Sp1Q1 (lane 4),
Sp1Q2 (lane 5), and Oct1Q (lane 6).
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To obtain a reliable quantification of

-galactosidase also at low
expression levels, a highly efficient protein extraction
method was
employed (see Materials and Methods), and the experiment
was repeated
four times with independent yeast transformants.
The yeast
transactivator Gal4p, when bound to the remote enhancer
position,
activated the reporter gene to a similar extent when
the proximal site
was either not occupied or was bound by transcriptionally
inert
proteins like Lex (amino acids 1 to 202) or Lex fused to
the Gal4
dimerization domain (Lex-Gal4 dim) (Fig.
2B, lanes 7
to 9). Combination
of distal Gal4p with proximal glutamine-rich
activators led to a strong
reporter gene expression, in which
the contributions of the remote
Gal4p (lane 7) and the proximal
glutamine-rich activators (lanes 4 to
6) were more than additive.
Sp1Q1 synergized with the remote Gal4p
activator approximately
sixfold more efficiently than Gal4p alone
(compare lanes 10 and
7). The weaker-stimulating activation domain
Sp1Q2 and the glutamine-rich
activation domain of Oct1 yielded three-
and fourfold-higher activities,
respectively, compared to the level of
Gal4p alone (lanes 11,
12, and 7,
respectively).
To control for protein stability and binding capacity of these Lex
fusion proteins, whole-yeast protein extracts were subjected
to gel
mobility shift assays with labeled Lex site oligonucleotide
(Fig.
2C).
Lex fused to the Gal4 dimerization domain (amino acids
58 to 97) or
fused to Sp1Q1, Sp1Q2, and Oct1Q showed comparable
DNA-binding
activities, while the signal with Lex (amino acids
1 to 202) was
weaker. We therefore reasoned that the differential
cooperation of the
Lex fusion proteins with the Gal4p activator
is due to their different
transactivation potentials, rather than
to differential expressions,
bindings, or stabilities of these
hybrid
proteins.
In addition to the yeast Gal4p activator, we tested the artificial
activator B42 (
27) fused to the Gal4 DBD for its ability
to
influence gene expression from a remote enhancer position or
in
cooperation with proximal glutamine-rich activation domains.
B42
synergized with the glutamine-rich activation domains of Sp1
and Oct1,
comparable to the values observed with the Gal4p activator
(data not
shown). As an additional control, in order to see whether
the observed
synergistic gene activation was not a peculiarity
of the Lex fusion
proteins but was also evident with another heterologous
DBD, we
exchanged the positions of the
cis-regulatory elements
controlling the LacZ reporter gene. This resulted in a LacZ reporter
gene driven by two proximal Gal4 and three distal Lex binding
sites.
The glutamine-rich activation domains Sp1Q1 and Oct1Q were
fused to the
Gal4 DBD (amino acids 1 to 147). With the distal
amphipathic

-helical transcriptional activation domain (AH) (
17)
fused to Lex (amino acids 1 to 202), they synergized more than
two- and
threefold, respectively (data not
shown).
In mammalian cells, Sp1 is also able to activate the class of promoters
that lack a TATA box (TATA-less promoters) (
4,
10,
21,
31,
33,
44). We were therefore interested to
see whether the stronger
glutamine-rich activation domain of Sp1
might also activate the yeast
TATA-less
TRP3 promoter. To this
end, we replaced the core
promoter of the reporter gene described
in Fig.
2A with the TATA-less
TRP3 core promoter. The distal Gal4p
activator and the
proximal Lex-Sp1Q1 activated the TATA-less driven
reporter gene more
than twofold (data not
shown).
In addition to the remote activators Gal4p,

-helical transcriptional
activation domain AH, and B42, we tested the acidic
activation domain
of the herpes simplex viral activator VP16 (
41)
fused to the
Gal4 DBD (Gal4-VP16) for its effect to stimulate
transcription either
alone or in combination with proximally bound
Sp1Q1. The reporter gene
in the yeast strain YENH200, in which
the remote enhancer was separated
from the proximal binding sites
by a 200-bp spacer, was activated by
Gal4-VP16 by more than fourfold
over that seen by the yeast activator
Gal4p (data not shown).
Combination of proximal glutamine-rich
activation domains and
Gal4-VP16 led only to a weak stimulation (less
than a twofold
increase). We considered whether Gal4-VP16 on its own
could activate
reporter gene expression to nearly the maximum extent
under the
tested promoter configuration. In such a scenario, a
proximally
bound glutamine-rich activator would only make minor
contributions
to gene activation. We attempted to weaken the influence
of the
strong activator by increasing the distance between its binding
sites and the promoter. To this end, we replaced the 200-bp spacer
sequence between the proximal and distal binding sites with 400-
and
800-bp spacers, respectively. These reporters were also integrated
into
the genomic
URA3 locus in yeast and were tested for relative

-galactosidase activity. The reporter containing the 400-bp spacer
was only weakly activated by the remote Gal4-VP16 alone or by
the
proximally bound glutamine-rich Lex-Sp1Q1 alone (Fig.
3A).
However, combination of distal
Gal4-VP16 and proximal Lex-Sp1Q1
resulted in strong synergistic gene
activation. The reporter containing
the 800-bp spacer was not
influenced by the remote Gal4-VP16 when
tested alone or in combination
with the proximal, transcriptionally
inert Lex protein as compared to
the background (Fig.
3B). Nevertheless,
the combination of remote
Gal4-VP16 and proximal Lex-Sp1Q1 did
result in a significant increase
in reporter gene expression compared
to the control. Particularly
striking is the fact that Gal4-VP16
activation over the very long
distance of 800 bp entirely depends
on the presence of a
promoter-proximal glutamine-rich domain.

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FIG. 3.
The herpes simplex viral activator VP16 synergizes with
a proximal glutamine-rich activation domain of Sp1 over long distances
in yeast. (A) The potent activation domain of the herpes simplex
transactivator VP16 fused to the Gal4 DBD (Gal4-VP16) was tested for
its ability to stimulate gene expression from remote Gal4 binding sites
(Gal4 BS). These binding sites were separated from the proximal Lex
binding sites (Lex BS) by a 400-bp spacer sequence. A schematic drawing
of the chromosomal reporter construct is indicated above the graph.
Distal Gal4-VP16 or proximal Sp1Q1 fused to LexA (Lex-Sp1Q1) alone
activated to comparable low levels. Combination of both resulted in a
more-than-tenfold increase of reporter gene transcription as compared
to the effect of each activator tested on its own. (B) Over the very
long distance of 800 bp, the Gal4-VP16 transactivator did not stimulate
gene expression at all when tested either alone or with the proximal,
transcriptionally inert LexA. However, in combination with the
proximally bound glutamine-rich domain of Sp1 (Lex-Sp1Q1), Gal4-VP16
strongly contributed to gene expression, i.e., under these conditions,
the enhancer-bound activator is strictly dependent on the presence of a
promoter-proximal glutamine-rich activation domain.
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The serine/threonine-rich domains of Sp1 do not influence the
adjacent glutamine-rich activation domains.
Several
serine/threonine-rich domains have been reported to harbor
transcriptional activity (18, 38, 39). The Sp1 transcription factor contains two serine/threonine-rich domains, each immediately N
terminal to the two glutamine-rich activation domains (see Fig. 4A for a schematic drawing). We wanted to
determine whether these two serine/threonine-rich domains of Sp1 could
influence the activation potential of the adjacent glutamine-rich
domains. For this, we fused fragments of Sp1 containing the
serine/threonine-rich and Q1 domains (amino acids 1 to 161) as well as
the serine/threonine-rich and Q2 domains (amino acids 161 to 403) to
the Lex DBD. These fusion proteins were compared to their counterparts
containing only the glutamine-rich activation domains Q1 and Q2 (Fig.
4B). We observed that the serine/threonine-domain-containing constructs behaved in a manner indistinguishable from that of the pure
glutamine-rich activation domains. Therefore, the serine/threonine-rich
domains apparently do not influence the transactivation potential of
the adjacent Q1 or Q2 activation domain of Sp1 in yeast. These data are
in agreement with previous results from Drosophila Schneider cells that indicated that the serine/threonine-rich domains of Sp1 do
not contribute to transcriptional activation (9).

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FIG. 4.
The serine/threonine-rich domains of Sp1 do not
influence transactivation by the adjacent glutamine-rich activation
domains. (A) Schematic drawing of full-length Sp1 transcription factor
(696 amino acids). Sp1 harbors two glutamine-rich activation domains
termed Q1 and Q2, two serine/threonine-rich domains, and a DBD at the C
terminus. (B) Quantitative -galactosidase assay. The activity of the
glutamine-rich activation domains Q1 and Q2 were compared with
N-terminal extensions that included the serine/threonine-rich domains.
The activity of the different Lex DBD hybrids was assayed in yeast when
bound to the proximal position, either alone (no Gal4p) or in
combination with a distal Gal4p activator (with Gal4p). The
serine/threonine-domain-containing constructs activated reporter gene
expression indistinguishably from that of the respective activation
domains Q1 or Q2.
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Mutations in Sp1Q2 similarly affect its transactivation activity in
yeast and in human cells.
The Drosophila TATA-binding
protein (TBP)-associated factor TAFII110 has been shown to
interact with the human transcription factor Sp1 (20). The
level of Sp1 transcriptional activity in Drosophila directly
correlated with the strength of interaction between the glutamine-rich
activation domains of Sp1 and TAFII110 (16).
Substitutions in the weaker of the two glutamine-rich activation
domains (Sp1Q2), changing three leucines to alanines (L
A) or one
tryptophan to alanine (W
A), were reported to be defective in their
ability to interact with the Drosophila TAFII110 in a yeast two-hybrid assay. When fused to the Zn finger DBD of Sp1,
they also failed to activate transcription of a reporter gene dependent
on six Sp1 binding sites from the SV40 promoter in
Drosophila Schneider cells (16). We introduced
the same mutations as described (L
A and W
A) and the combination
of them (L, W
A) by site-directed mutagenesis (Fig.
5A). The resulting mutant Sp1Q2 domains
fused to Lex (amino acids 1 to 202) were tested for their ability to
synergize with the distal Gal4p activator in the yeast reporter strain
described in Fig. 2A. Unexpectedly, we could not observe a significant
difference of the two mutants (L
A and W
A) relative to
transactivation by wild-type Sp1Q2 in yeast (Fig. 5B). Only a
combination of the two mutants, with the four amino acids exchanged in
the 147-amino-acid-long activation domain reduced activity to near
background level.

View larger version (41K):
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[in a new window]
|
FIG. 5.
Mutations in Sp1Q2 similarly affect its activation
potential in both yeast and human cells. (A) Substitutions of three
leucines to alanines (L A) and a tryptophan to an alanine (W A),
which are known to affect the interaction with dTAFII110
and gene activation in Drosophila cells, were introduced in
the Q2 activation domain of Sp1. In addition, both types of mutations
were combined (L, W A), resulting in a four-amino-acid exchange in
the 147-amino-acid-long activation domain. (B) Yeast strains containing
the reporter gene as described in Fig. 2A were transformed with
plasmids encoding the Gal4 activator and different Lex-Sp1Q2 mutants or
wild type. Quantitative -galactosidase assays showed that the two
mutants (L A and W A) still activated gene expression as much as
the wild type. Only the combination mutant (L, W A) diminished the
transactivation potential of the Q2 domain. (C) Mutant and wild-type
Sp1Q2 fusion proteins bind similarly to the Lex binding sites. EMSAs
were performed by using total protein extracts from yeast cells and
32P-labeled oligonucleotide duplex containing two Lex
binding sites. Equal amounts of protein were used for each EMSA. The
Sp1Q2 mutants (lanes 4 to 6) bound to the Lex binding sites as well as
the wild type (lane 1), indicating similar protein expression levels.
Protein extracts from isogenic yeast cells containing an empty
expression plasmid did not yield any detectable bandshifts (lane 3).
The immunoblot using anti-LexA antibodies showed similar expression of
the wild-type Sp1Q2 and the different mutants. (D) Transfection of HeLa
cells with wild-type and mutant Sp1Q2. The mutants tested in yeast were
subcloned as Gal4 (amino acids 1 to 93) hybrids into a mammalian
expression vector. These transactivator plasmids were cotransfected
into HeLa cells along with a reporter plasmid, under the control of two
proximal Gal4 binding sites and a downstream SV40 enhancer (see Fig.
1A), and a reference plasmid. S1 nuclease analysis was performed, and
the signals were quantified by using a PhosphorImager. As in yeast
(Fig. 4B), the mutants L A and W A had the same transactivation
potential as wild-type Sp1Q2. Only the combined mutations L, W A
showed a reduced ability to stimulate reporter gene expression, which
was still above background.
|
|
We also addressed the possibility that the different stimulatory
effects of the mutants observed were caused by different
stabilities of
the proteins in vivo. We therefore performed EMSAs
with whole-yeast
protein extracts and labeled oligonucleotides
containing two
Lex-binding sites (Fig.
5C). All the mutant Lex-Sp1Q2
proteins were
apparently expressed at similar levels as judged
from their DNA-binding
signal, as compared to the wild-type Sp1Q2.
This result was confirmed
by immunoblot analysis by using anti-LexA
antibodies (Fig.
5C).
We then tested these three mutants of Sp1Q2 in HeLa cells to see
whether the seemingly greater permissivity of yeast in comparison
to
the published results with
Drosophila (compare Fig.
5B to
reference
16) also applied to human cells. For this
purpose, the mutant
domains were fused to the Gal4 DBD (amino acids 1 to 93) and were
subcloned into a mammalian expression vector (same as
described
in Fig.
1A, Transactivators). The different expression
vectors
were cotransfected into HeLa cells with the

-globin reporter
plasmid containing two proximal Gal4 binding sites and a downstream
SV40 enhancer. As observed in yeast, the two mutants (L

A and
W

A)
did not affect the transactivation potential in HeLa cells.
Only the
combination of both mutants (L, W

A) displayed a reduced
ability to
synergize with the remote SV40 enhancer, again above
the basal
expression level mediated by Gal4 DBD alone (Fig.
5D).
The apparent difference between the results in
Drosophila
versus our results with yeast and human cells remains to be explained.
For example, the reporter genes used in
Drosophila, yeast,
and
humans were controlled by different core promoters that may respond
differently to Sp1-mediated gene activation (
11). In
addition,
we determined the influence of these mutants to synergize
with
a remote enhancer, whereas in
Drosophila the
transactivation potential
of the mutants was determined in an isolated
context (
16).
The glutamine-rich domain of Snf5p activates transcription in
yeast.
The above-mentioned results show that glutamine-rich
activation domains from Sp1 and Oct1 on their own stimulate
transcription in yeast and human cells only to a minor extent compared
to acidic activators, but they readily synergize with a remote
enhancer. Next, we wanted to test whether a glutamine-rich domain of an endogenous yeast protein could also activate gene expression. A search
of the yeast genome database for open reading frames (ORFs) containing
a stretch of at least 10 glutamine residues revealed that out of 64 hits, 48 are known ORFs. Of these 48, 18 (37%) are factors involved in
transcriptional activation. They include the following genes:
FLO8, DAT1, HAP2, MCM1,
MED3, POP2, TAF61, NDD1,
IXR1, CRZ1, CCR4, SNF5,
DAL81, GAL11, YPR022C,
GTS1, SRB9, and HAP1. The rest of the
ORFs could be assigned to eight kinase or kinase-associated factors,
five RNA-binding proteins, three factors involved in G-protein-coupled
complexes, two chaperones, and eight other miscellaneous factors. This
distribution indicates that the largest fraction of yeast
glutamine-rich proteins are involved in transcriptional regulation and activation.
To see whether glutamine-rich domains derived from yeast transcription
proteins can also activate gene expression, we chose
Snf5, which
contains a glutamine-rich domain of similar size to
that of the
glutamine-rich activation domains of Sp1 and Oct1,
yet a higher
glutamine content, including long polyglutamine tracts.
Glutamine-rich
domains and polyglutamine stretches were previously
found to have
similar properties in transcriptional activation
in mammalian cells
(
15). Snf5p is a component of the SWI-SNF
complex that is
necessary for transcriptional activation of several
genes, most
probably by remodeling chromatin (
6,
19,
25,
29,
34;
for a review, see reference
7). Full-length Snf5p,
when fused to a heterologous DBD, can activate transcription in
yeast
(
26). The
SNF5 gene codes for a 905-amino-acid
protein
(Fig.
6A) that contains an acidic
domain (amino acids 490 to 588),
three proline-rich domains (amino
acids 72 to 132, 287 to 324,
and 714 to 882) and two glutamine-rich
domains (amino acids 61
to 69 and 185 to 286) (
26). We fused
the 102-amino-acid moiety
of the long glutamine-rich domain (amino
acids 185 to 286) of
Snf5p to the DBD of Lex (Fig.
6A, Lex-Snf5 amino
acids 185 to
286). This stretch contains 73 glutamine residues. In
addition,
we cloned an internal deletion of 50 amino acids that
eliminates
42 glutamine residues (deletion of Lex-Snf5 amino acids 211 to
260). These constructs were tested for their abilities to activate
transcription of the yeast reporter described in Fig.
2A when
bound in
a proximal position either alone or in combination with
a distal Gal4p
activator (Fig.
6B). For comparison, we used the
stronger
glutamine-rich activation domain of Sp1 (Lex-Sp1Q1).
The glutamine-rich
domain of Snf5p activated transcription significantly
above the
background control of Lex alone (lanes 4 and 1). This
glutamine-rich
domain also synergized with the distal Gal4p activator
(lane 8); the
reporter gene activity was more than threefold higher
when the Lex-Snf5
amino acids 185 to 286 domain was bound at the
proximal position in
combination with distal Gal4p (lane 8) compared
to binding of Gal4p and
Lex only (lane 5). The deletion in the
glutamine-rich domain of Snf5p
(Lex-Snf5 amino acids 211 to 260)
abolished the activation potential
with a remaining activity comparable
to Lex DBD alone (lanes 3 and 7).

View larger version (29K):
[in this window]
[in a new window]
|
FIG. 6.
The glutamine-rich domain of Snf5p activates
transcription in yeast. (A) Schematic drawing of the
905-amino-acid-long Snf5p factor which contains an acidic region (amino
acids 490 to 588), three proline-rich domains (amino acids 72 to 132, 287 to 324, and 714 to 882), and two glutamine-rich domains (amino
acids 61 to 69 and 185 to 286). The boundary amino acid positions of
the corresponding domains are indicated. The larger glutamine-rich
domain of Snf5p (amino acids 185 to 286) (Lex-Snf5 185-286) as well as
a deletion mutation (deletion of amino acids 211 to 260) of this
glutamine-rich domain (Lex-Snf5 211-260) were fused to the Lex DBD.
(B) Quantitative -galactosidase assay. The glutamine-rich domain of
Snf5p stimulated LacZ expression when bound proximally to the TATA box
(lane 4) and synergized with a distal Gal4p activator (lane 8). For
comparison, the stronger glutamine-rich activation domain of Sp1
(Lex-Sp1Q1) was used (lanes 2 and 6). The 50-amino-acid deletion
abolished the transactivation potential of the Snf5p glutamine-rich
domain (lane 3) and hence the synergism with the distal Gal4p activator
(lane 7).
|
|
 |
DISCUSSION |
Glutamine-rich domains and polyglutamine stretches are integral
components of many proteins involved in transcriptional regulation, from yeast to human. We had previously shown that in mammalian cells,
glutamine-rich domains poorly activate transcription on their own when
tethered to DNA in a promoter-proximal position but strongly synergize
with remotely bound transcriptional activators of the acidic type
(38). While yeast cells readily respond to mammalian acidic
activators, we and others had found them to be nonresponsive to
glutamine-rich activation domains of mammalian factors (23, 24,
32), which at that time suggested that yeast lacks an important
interaction partner for these latter domains. In Drosophila,
which has no homologue of the mammalian Sp1 transcription factor and
thus was suitable for testing the activity of ectopically expressed
Sp1, its glutamine-rich activation domains were found to bind to
TAFII110, a TBP-associated general transcription factor
(8, 16, 20). The completion of the entire S. cerevisiae genome sequence revealed a number of homologues for
mammalian TATA binding protein-associated factors, but no counterpart
to Drosophila TAFII110/human
TAFII130, which seemed to offer a straightforward
explanation for the lack of activity of the glutamine-rich domains in
yeast. More recently, the fission yeast S. pombe was found
to be responsive to glutamine-rich domains of mammalian origin
(35). In the sequence database of S. pombe we
have found a 365-amino-acid ORF with considerable similarity to
dTAFII110/hTAFII130. This prompted us to
introduce this protein into the budding yeast and to study its effect
on glutamine-rich activation domains. The S. pombe protein
was expressed in S. cerevisiae, but failed to influence the
expression of reporter genes driven by glutamine-rich activation
domains in any of the enhancer/promoter constellations tested (D. Escher and W. Schaffner, unpublished results). Although we cannot
exclude the possibility that an S. pombe-specific cofactor
for TAFII110 is missing in the budding yeast, it has become
clear by now that the latter can respond well to glutamine-rich domains
in the absence of a TAFII110 homologue. Recently, it was
reported that the glutamine-rich activation domain Sp1Q1 is able to
activate transcription of a reporter gene when tethered to DNA in
S. cerevisiae (43). This was, however, only observed when the reporter gene was present on a high-copy-number plasmid (2µm), while no activation was detected when it was
integrated in a chromosomal locus. The present study clearly shows that
glutamine-rich domains, both of mammalian and yeast origin, stimulate
reporter gene expression in a yeast chromosomal context if the promoter region is structured in a manner that is prevalent in higher eukaryotes but less common in yeast, namely a promoter with proximal factor binding sites plus enhancer-type regulatory sequences further upstream.
Such a configuration was not tested in previous experiments, including
the ones from our lab; rather, a simpler promoter version with a few
bindings sites in the immediate vicinity of the TATA box had been used.
In the present study, the glutamine-rich activation domains of Sp1 and
Oct1, when tethered to a proximal position, even synergized to
comparable levels with remote acidic activators in yeast and human
cells. Furthermore, mutations in the activation domain of Sp1Q2 had
similar effects in yeast and HeLa cells, suggesting a common
interaction pathway. Thus, it remains to be seen whether the
interaction observed between TAFII110/TAFII130
and the human Sp1 glutamine-rich activation domains is of general
significance. Whatever the role of the TAFII110-like
protein in S. pombe, our results show that glutamine-rich
domains behave very similarly in yeast and human and that their
activity does not depend on the presence of a TAFII110
homologue in budding yeast. This again raises the question of the
possible target(s) of glutamine-rich domains. The TBP itself was
reported to interact with glutamine-rich activation domains. However,
the good activity of glutamine-rich domains in yeast observed by us is
difficult to reconcile with the report that TBPs from
Drosophila and humans, but not from yeast, bind well to
glutamine-rich domains (12, 32). Recently, a multiprotein
complex termed "cofactor required for Sp1" was found to mediate Sp1
activity in extracts of human cells (36). Some of the
characterized components are absent in yeast, whereas others do have a
yeast homologue (36) and thus may be involved in mediating
the activity of glutamine-rich domains both in human and yeast.
 |
ACKNOWLEDGMENTS |
We are indebted to Lee Martin and Werner Lutz for critical
comments on the manuscript. We also thank Cristina Torres-de los Reyes
for excellent technical assistance and Fritz Ochsenbein for excellent artwork.
This work was supported by the Kanton Zürich and the
Schweizerischer Nationalfonds.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Molekularbiologie, Universität Zürich, CH-8057
Zürich, Switzerland. Phone: 41-1-635 3150. Fax: 41-1-635 6811. E-mail: wschaffn{at}molbio.unizh.ch.
 |
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