Department of Molecular Biology, Cell Biology
and Biochemistry, Brown University, Providence, Rhode Island
029121; Beatson Institute for Cancer
Research, CRC Beatson Laboratories, Bearsden, Glasgow G61 1BD, United
Kingdom2; Department of Medicine and
Whittier Diabetes Program, University of California San Diego, La
Jolla, California 92093-06733; and Abt.
Nephrologie, Medizinische Hochschule Hannover, D-0625 Hannover,
Germany4
Received 7 October 1999/Returned for modification 4 November
1999/Accepted 18 February 2000
We have recently identified the Raf kinase inhibitor protein (RKIP)
as a physiological endogenous inhibitor of the Raf-1/MEK/extracellular signal-regulated kinase (ERK) pathway. RKIP interfered with MEK phosphorylation and activation by Raf-1, resulting in the suppression of both Raf-1-induced transformation and AP-1-dependent transcription. Here we report the molecular mechanism of RKIP's inhibitory function. RKIP can form ternary complexes with Raf-1, MEK, and ERK. However, whereas MEK and ERK can simultaneously associate with RKIP, Raf-1 binding to RKIP and that of MEK are mutually exclusive. RKIP is able to
dissociate a Raf-1-MEK complex and behaves as a competitive inhibitor
of MEK phosphorylation. Mapping of the binding domains showed that MEK
and Raf-1 bind to overlapping sites in RKIP, whereas MEK and RKIP
associate with different domains in Raf-1, and Raf-1 and RKIP bind to
different sites in MEK. Both the Raf-1 and the MEK binding sites in
RKIP need to be destroyed in order to relieve RKIP-mediated suppression
of the Raf-1/MEK/ERK pathway, indicating that binding of either Raf-1
or MEK is sufficient for inhibition. The properties of RKIP reveal the
specific sequestration of interacting components as a novel motif in
the cell's repertoire for the regulation of signaling pathways.
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INTRODUCTION |
In metazoans, the
Ras/Raf-1/MEK/extracellular signal-regulated kinase (ERK) module is a
ubiquitously expressed signaling pathway that conveys mitogenic and
differentiation signals from the cell membrane to the nucleus
(6). This kinase cascade appears to be spatially organized
in a signaling complex nucleated by Ras proteins (15). The
small G protein Ras is activated by many growth factor receptors and
binds the Raf-1 kinase with high affinity when activated. This induces
the recruitment of Raf-1 from the cytosol to the cell membrane and its
subsequent activation by mechanisms which remain incompletely
understood (16). Activated Raf-1 then phosphorylates and
activates MEK, a kinase that in turn phosphorylates and activates ERK,
the prototypic mitogen-activated protein kinase (MAPK) (13).
Activated ERKs can translocate to the nucleus and regulate gene
expression by the phosphorylation of transcription factors
(19).
Studies with yeasts have revealed the important role of scaffolding
proteins which assemble the components of MAPK pathways and thereby
ensure that the signal transfer is efficient and specific (5). Mammalian homologues of such scaffolding proteins have been postulated, but despite extensive efforts, only a few candidates have been identified. These include JIP-1, a scaffolding protein for
the stress-activated MAPKs/JNKs (24), as well as Ksr, a protein kinase identified in genetic screens (4), which
could have a similar function in the ERK pathway. Ksr binds to Raf-1, MEK, and ERK, but as both activation and inhibition by Ksr were observed, the physiological role of Ksr remains enigmatic (3, 10,
14, 23, 25, 27). Since scaffolding proteins are expected to
function in a stoichiometric manner, these discrepancies may have
arisen from situations of nonstoichiometric expression levels
(20) but also could reflect additional regulatory properties of Ksr. These observations suggest that the Raf-1/MEK/ERK pathway is
subject to an additional level of regulation exerted by associated proteins. This hypothesis was further confirmed by the cloning of MP-1,
a MEK-1-binding protein that specifically enhances the activation of
ERK-1 (21).
Using the yeast two-hybrid system, we recently identified a protein
which binds to Raf-1, MEK, and ERK in vitro and in vivo (26). This protein was dubbed the Raf kinase inhibitor
protein (RKIP) because it interfered with the activation of the
Raf
MEK
ERK signaling pathway in vitro and in vivo. RKIP
overexpression suppressed the ERK pathway and, as a consequence,
interfered with Raf-1-induced transformation and AP-1-dependent
transcription, whereas the downregulation of RKIP had the opposite
effect. Genetic evidence indicated that RKIP functions at the Raf-1/MEK
interface, because it suppressed signaling by activated Raf-1 mutants
but not by activated MEK alleles. Here we describe the molecular
mechanism of how RKIP works to inhibit the ERK pathway.
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MATERIALS AND METHODS |
Plasmids and protein expression.
RKIP expression plasmids
have been previously described (26). Deletion mutants of
pCMV5-HA-RKIP (26) for expression in mammalian cells were
generated by PCR. To construct FLAG-tagged Raf-1, the Raf-1 cDNA was
PCR amplified for in-frame cloning into pCMV2-FLAG. For expression in
Escherichia coli, deletion mutants were made as follows.
GNX, which contains the BXB cDNA cloned into pGEX-KG (7),
was cut with HindIII and other restriction enzymes (see
Fig. 5a). HindIII cuts downstream of the BXB cDNA and
upstream of stop codons in all three reading frames. After blunt ending
with T4 polymerase, the plasmids were religated. The same strategy was
used to make glutathione S-transferase (GST)-RKIP deletion
mutants. MEK-1 deletion mutants were generated by PCR and cloned into
pRSETA, resulting in the addition of an N-terminal six-His tag.
Proteins were expressed and purified as described previously (7,
26). Activated Raf-1 was purified from Sf-9 insect cells
coinfected with GST-Raf-1 plus RasV12 and Lck as previously described
(18). GST-MEK-1-Raf-1 complexes were produced in Sf-9
insect cells and purified by adsorption to glutathione Sepharose, as
described previously (18).
In vitro binding assays.
Typically, binding reactions
between purified recombinant proteins were done in phosphate-buffered
saline (PBS) containing 10% bovine serum as a nonspecific competitor.
Consistent results were obtained with 0.5 or 5% bovine serum albumin.
After incubation for 1 to 5 h at 4°C, the samples were washed
four times with PBS, resolved by sodium dodecyl sulfate
(SDS)-polyacrylamide gel electrophoresis and blotted. Pulldown assays
with the His/MEK-1 deletion mutants were performed by incubating 1 µg
of soluble His/MEK-1 proteins with 1 µg of GST or GST fusion proteins
immobilized on glutathione Sepharose beads in 0.5 ml of buffer
containing 20 mM Tris-HCl (pH 7.4), 0.2 mM EDTA, 0.1 M NaCl, and 1 mM
dithiothreitol. The beads were washed twice with the same buffer
containing 0.1% NP-40, resolved by SDS-polyacrylamide gel
electrophoresis, and immunoblotted with anti-His tag antibody (Qiagen).
Since full-length Raf-1 cannot be expressed in E. coli in an
active form, Sf-9 insect cells infected with a Raf-1 baculovirus were
used. Lysates were prepared by freeze-thawing Sf-9 cells in PBS or by
lysis in TBST (20 mM Tris HCl [pH 7.4], 150 mM NaCl, 2 mM EDTA, and
1% Triton X-100) supplemented with protease inhibitors (1 mM
phenylmethylsulfonyl fluoride and 1 µg of leupeptin/ml).
Detergent-free lysis improved the recovery of complexes in the binding
reactions but gave qualitatively the same results as Triton X-100
lysates. Lysates were clarified by centrifugation at 23,000 × g for 10 min, and the supernatants were used for the binding
reactions. The blots were developed using chemiluminescence.
Phosphorylated His/MEK-1 for use in RKIP binding assays (see Fig. 4c)
was obtained by incubation with GST-Raf-1 immobilized on glutathione
Sepharose in the presence of 20 µM ATP and 0.5 µCi of
[
-32P]ATP for 45 min. The GST-Raf-1 beads were
removed by centrifugation. The supernatant was diluted fivefold with
PBS and incubated with GST or GST-RKIP beads. To reduce nonspecific
binding, the beads were preabsorbed with 10% serum or 2% bovine serum
albumin for at least 2 h. Typically, 0.5 to 2 µg of His/MEK-1
per binding reaction was used. Phosphorylated ERK was made in a similar
fashion with the following modifications. The GST portion of GST-ERK2 was removed by thrombin cleavage. GST-MEK was activated by GST-Raf-1 as described above except that only cold ATP was used. After 30 min,
ERK2 and 0.5 µCi of [
-32P]ATP were added and
incubated for a further 15 min. The reaction was diluted fivefold with
PBS, and 20 µl of glutathione Sepharose beads was added to assure the
removal of all GST-tagged proteins. The supernatant was used for the
binding reactions. For some experiments, activated ERK purchased from
New England Biolabs was used with consistent results.
Kinase assays.
For the enzyme kinetic analysis, activated
Raf-1 was prepared from Sf-9 cells coinfected with GST-Raf-1 and Ras
plus Lck in Sf-9 cells, as previously described (7). Kinase
reactions were carried out in 30 µl of Raf kinase buffer
(7) supplemented with 10 µM ATP and 2.5 µCi of
[
-32P]ATP using GST-MEK-1 as substrate. Reaction
mixtures were incubated 20 min at 25°C and resolved on SDS-10%
acrylamide gels; MEK-1 phosphorylation was then quantitated using a
Fuji phosphorimager. MEK-1 autophosphorylation was subtracted, and the
data were analyzed with the SigmaPlot software. The kinase activity of
Raf-1 immunoprecipitates (see Fig. 4a) was measured as described
previously (1). The phosphorylation of negative His/MEK-1
was detected (see Fig. 4b) with a phosphospecific MEK antiserum (New
England Biolabs).
Reporter gene assays.
AP-1 luciferase assays and
microinjection experiments with affinity-purified RKIP antiserum and
TRE-lacZ reporter plasmids were carried out as previously described
(26).
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RESULTS |
The microinjection of anti-RKIP antibodies raised against the
full-length RKIP protein efficiently activated an AP-1-dependent reporter gene. This induction was due to the activation of MEK, since
it could be suppressed by two structurally different MEK inhibitors,
U0126 and PD98059 (Fig. 1a). This showed
that the expression of the reporter gene is controlled by the ERK
pathway and supports our previous conclusion that RKIP inhibits this
pathway by downregulating the activation of MEK by Raf-1
(26). The induction of the reporter gene could be completely
prevented by coinjection of an RKIP expression vector (26),
indicating that the RKIP antibodies specifically neutralized RKIP
function. These antibodies are therefore useful tools for investigating
the molecular mechanism by which RKIP works. The RKIP antiserum
interfered with the binding of Raf-1 and MEK to RKIP (Fig. 1b). This
effect was specific, as (i) the corresponding preimmune serum had no
effect and (ii) the RKIP antibodies did not prevent the binding of
Raf-1 to 14-3-3. Furthermore, the RKIP antibodies reversed the
inhibitory effect of RKIP on MEK phosphorylation by Raf-1 (Fig. 1c).
These results indicated that the inhibitory effect of RKIP on MEK
activation by Raf-1 depends on RKIP binding to Raf-1 and/or to MEK.

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FIG. 1.
RKIP inhibits the ERK pathway by preventing MEK
activation. (a) Rat-1 cells were microinjected with a TRE-LacZ reporter
plasmid and affinity-purified RKIP antibodies or preimmune
immunoglobulin G (IgG) and treated as indicated. The MEK inhibitors
PD98059 and U0126 were administered 1 h before microinjection of
TPA (100 ng/ml). (b) RKIP antibodies prevent binding of RKIP to Raf-1
or MEK. GST, GST-RKIP, or GST-14-3-3 beads were incubated with
saturating amounts of RKIP antibodies (I) or the corresponding
preimmune serum (P) and tested for binding of Raf-1 or MEK-1. WB,
Western blot. (c) The phosphorylation of kinase-negative MEK-1 (knMEK)
by activated Raf-1 was examined in the presence (+) or absence ( ) of
10 µM purified RKIP. RKIP was preincubated with RKIP antibodies or
the corresponding preimmune serum for 1 h.
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Therefore, we analyzed the role of RKIP in the formation of ternary
protein complexes with Raf, MEK, and ERK in more detail (Fig.
2). Immobilized GST-MEK could bind Raf-1,
ERK, and RKIP (Fig. 2a). However, while GST-MEK could bind both ERK and
RKIP simultaneously (Fig. 2a, panels 2 and 3), Raf-1 and RKIP seemed to
compete for binding (Fig. 2a, panels 1 and 2). Consistent results were
obtained when GST-RKIP, GST-ERK, or GST-Raf-1 beads were used for
binding assays. RKIP decreased the binding of Raf-1 to GST-MEK beads
(Fig. 2a, panel 1) and the binding of MEK to GST-Raf-1 beads (Fig. 2d,
panel 1). In both cases, RKIP competed for binding. In contrast, RKIP
did not interfere with the association of ERK with GST-MEK beads (Fig.
2a, panel 3) or of MEK with GST-ERK beads (Fig. 2c, panel 1). When
GST-RKIP beads were used as bait, Raf and MEK mutually diminished their
binding to GST-RKIP (Fig. 2b, panels 1 and 2), whereas MEK and ERK
mixed together bound with an efficiency similar to that of each
individual protein alone (Fig. 2b, panels 1 and 3). In summary, these
experiments demonstrated that MEK and ERK can bind to RKIP at the same
time but the binding of Raf-1 to RKIP and that of MEK are mutually
exclusive. Further, these data suggest that the binding of Raf-1 or MEK
to RKIP may compete with their binding to each other and thus interfere
with the formation of Raf-1-MEK complexes.

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FIG. 2.
Analysis of the composition of RKIP protein complexes.
(a) GST-MEK beads were incubated with RKIP, Raf, and MEK in the
indicated combinations. GST-RKIP beads (b), GST-ERK beads (c), or
GST-Raf-1 beads (d) were incubated with recombinant purified proteins
as indicated. Incubations were done as described in Materials and
Methods, and associated proteins were visualized by Western blotting.
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This possibility was tested. The analysis of the kinetics of MEK
phosphorylation by Raf-1 revealed that RKIP diminished the Km but not the Vmax of
the reaction, indicating a competitive type of inhibition (Fig.
3a). Control proteins, such as GST and 14-3-3, had no effect, and since RKIP is not a Raf-1 substrate, it did
not compete for phosphorylation (data not shown). We have previously
shown that the association of Raf-1 and MEK is required for efficient
MEK phosphorylation and activation (12). Therefore, we
tested whether RKIP could disturb the physical interaction between
Raf-1 and MEK. For this purpose we coexpressed Raf-1 and GST-MEK-1 in
Sf-9 insect cells and purified the GST-MEK-1-Raf-1 complex by
adsorption to glutathione Sepharose beads. The Raf-1-GST-MEK complex
was incubated with increasing amounts of purified RKIP. After a
washing, the composition of the complex was examined by Western
blotting (Fig. 3b). The addition of RKIP resulted in RKIP binding and a
concomitant displacement of Raf-1 from the GST-MEK beads, thus
confirming a competitive mode of inhibition. These data suggest that at
least two populations of Raf-1 can be distinguished, one that is
associated with MEK and competent for MEK phosphorylation and another
that is bound to RKIP and disabled for MEK phosphorylation. To test
this prediction, Raf-1 was produced in Sf-9 insect cells and recovered
either by affinity adsorption to GST-RKIP beads or by
immunoprecipitation with Raf antibodies from serial dilutions of the
same lysate (Fig. 3c). When assayed for MEK phosphorylation, the kinase
activity of RKIP-associated Raf-1 was severely impaired compared to an
equivalent amount of immunoprecipitated Raf-1. These results confirmed
the hypothesis that Raf-1 bound to RKIP is inactive as MEK kinase.

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FIG. 3.
RKIP inhibits Raf-1 by a competitive mechanism. (a)
Lineweaver-Burk plot of Raf-1 inhibition by RKIP. Activated GST-Raf-1
was used to phosphorylate GST-MEK-1 in the presence of increasing
amounts of RKIP, as indicated. Phosphorylation was quantified with a
Fuji phosphorimager. The data shown are the averages of three
independent experiments. (b) RKIP disrupts the Raf-1-MEK complex.
GST-MEK and Raf-1 were coexpressed in Sf-9 cells. The GST-MEK-Raf-1
complex was purified by adsorption to glutathione Sepharose beads,
washed, and resuspended in PBS. Purified RKIP was added at the
concentrations indicated. After 1 h at 4°C, the GST-MEK beads
were washed three times with PBS and examined for associated proteins
by Western blotting (WB) with the indicated antisera. (c) Raf-1 bound
to RKIP does not phosphorylate MEK. A lysate of Sf-9 cells expressing
activated Raf-1 was incubated with 5 µg of GST or GST-RKIP beads.
Serial dilutions of the same lysate were immunoprecipitated with the
anti-Raf serum crafVI. After three washes with PBS, the pellets were
resuspended in kinase buffer and incubated with 100 µM ATP and
kinase-negative MEK as substrate. MEK phosphorylation was visualized by
immunoblotting with a phospho-MEK-specific antiserum. Raf-1 was stained
with crafVI.
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These results also suggested that only the fraction of Raf-1 which is
not bound to RKIP is available for activation. Therefore, we examined
whether Raf-1 dissociates from RKIP during activation. For this
purpose, RKIP and Raf-1 were coexpressed in COS-1 cells (Fig.
4a). Raf-1 coprecipitated with RKIP in
quiescent cells. Stimulation of the cells with tetradecanoyl phorbol
acetate (TPA) plus epidermal growth factor caused an increase in Raf-1
kinase activity which correlated with a decrease of RKIP association. At later time points, as Raf-1 catalytic activity declined, the levels
of Raf-1 coprecipitating with RKIP increased again. To investigate
whether the changes in RKIP association are related to the activation
status of Raf-1, the binding of purified RKIP to inactive and activated
GST-Raf-1 beads was determined (Fig. 4b). Activated GST-Raf-1 was
produced in Sf-9 insect cells coinfected with RasV12 and Lck, which
results in a robust activation of the catalytic activity. GST-Raf-1
proteins were purified by adsorption to glutathione Sepharose beads and
incubated with recombinant RKIP produced in E. coli. Less
RKIP bound to activated GST-Raf-1, indicating that Raf-1 activation
weakens the affinity towards RKIP. This finding, however, did not seem
to depend on the kinase activity of Raf-1 per se. Kinase-negative Raf-1
mutants, such as RafK375W (11) or RafS621A (17),
as well as activated Raf-1 mutants, such as RafS259D (17) or
the isolated kinase domain BXB, bound to RKIP at levels comparable to
that of the wild-type Raf-1 (reference 26 and data
not shown). We also tested whether activation affected the binding of
MEK and ERK to RKIP. Purified MEK and ERK were phosphorylated in vitro
with recombinant Raf-1 or Raf-1 plus MEK, respectively, and incubated
with GST or GST-RKIP beads. The binding reaction products were washed,
separated on SDS gels, and immunoblotted with the appropriate antisera.
We did not observe any differences in binding between activated and nonactivated forms (data not shown). However, since only small fractions of MEK and ERK become phosphorylated (1), we also carried out the phosphorylation in the presence of
[
-32P]ATP in order to avoid misinterpretation due to
low phosphorylation efficiencies (Fig. 4c and d). The blots were
autoradiographed to detect phosphorylated MEK and ERK and were
subsequently stained with the cognate antisera to visualize total
protein bound. Under these conditions, binding of phosphorylated MEK
and ERK to RKIP was evident.

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FIG. 4.
Analysis of RKIP binding to activated Raf-1, MEK, and
ERK. (a) Mitogen activation of Raf-1 decreases its association with
RKIP. COS-1 cells were transiently transfected with Raf-1 and RKIP
expression vectors. Serum-starved cells were treated with epidermal
growth factor (EGF) (20 ng/ml) plus TPA (100 ng/ml) for the times
indicated. Raf-1 immunoprecipitates were analyzed for kinase activity,
and RKIP immunoprecipitates were examined for Raf-1. IP,
immunoprecipitation; WB, Western blot. (b) Purified RKIP produced in
E. coli was tested for binding to GST-Raf and activated (*)
GST-Raf beads. GST-Raf proteins were produced in Sf-9 cells and
activated by coexpression of RasV12 and Lck. An aliquot of the GST-Raf
beads was examined for phosphorylation of kinase-negative MEK (knMEK).
(c and d) MEK and ERK proteins were phosphorylated in the presence of
[ -32P]ATP and tested for binding to GST-RKIP beads.
Binding of phosphorylated proteins was detected by autoradiography.
Binding of total protein was visualized by Western blotting (WB). The
contribution of phosphoproteins to the Western blot signal is minimal,
because they represent less than 10% of the total protein.
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These data were consistent with Raf-1 being the main regulatory target
of RKIP. To further examine the molecular basis for the observed
competitive mode of RKIP inhibition, we mapped the domains in the Raf-1
kinase domain, BXB, which are necessary for RKIP and MEK binding (Fig.
5a). BXB deletion mutants were expressed as GST fusion proteins in E. coli and were examined for
binding to purified RKIP or MEK in vitro. Surprisingly, the required
binding domains were different. Raf-1 kinase subdomains VIb to VIII
were essential for MEK binding, whereas RKIP bound to subdomains I and
II. The latter region contains the ATP binding site, but RKIP did not
compete for ATP (data not shown). Likewise, RKIP and Raf-1 bound to
different domains in MEK-1 (Fig. 5b). As previously reported (2), Raf-1 bound to MEK-1 constructs containing the
proline-rich region, whereas RKIP bound to the N-terminus of MEK-1.
Thus, RKIP's ability to dissociate Raf-MEK complexes does not seem to
involve a direct competition for the same binding sites. Rather, it
must be due to an allosteric reduction of the binding affinity induced by RKIP or to mutual steric hindrance that excludes simultaneous binding of RKIP and Raf to MEK or of RKIP and MEK to Raf-1,
respectively. When we mapped the binding sites of Raf-1 and MEK-1 to
RKIP (Fig. 5c), the RKIP domain required for MEK binding could be
clearly located, while Raf-1 interacted with multiple domains in RKIP. Notably, removal of the RKIP carboxy terminus up to the
BspEI site enhanced Raf-1 association, whereas further
deletion up to the PpuMI site decreased Raf-1 binding again.
These data suggest that the interaction between Raf-1 and RKIP is
complex, involving a main site of binding to amino acids 77 to 108 in
the BspEI-PpuMI fragment, as well as minor
contacts with several other domains. The partial overlap between the
MEK and Raf-1 binding sites, however, is consistent with the
observation that RKIP cannot bind Raf-1 and MEK simultaneously (Fig.
2).

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FIG. 5.
Analysis of binding domains. (a) RKIP and MEK bind to
different domains of the Raf-1 kinase. GST-tagged BXB, GNX, and the
indicated deletion mutants were expressed in E. coli,
immobilized on glutathione Sepharose beads, and incubated with purified
RKIP or MEK-1. Proteins were visualized by Western blotting. The
diagram illustrates the GNX regions deduced to be required for binding.
Roman numerals refer to the kinase subdomains as defined by Hanks and
Quinn (8). (b) RKIP and Raf-1 bind to different domains of
MEK-1. Purified six-His-tagged MEK-1 deletion mutants were tested for
binding to GST-RKIP beads (left panel) and GST-Raf-1 beads (right
panel). His/MEK-1 proteins were detected by Western blotting with
anti-His antibodies. The lower panel shows a schematic summary. nd, not
done. (c) Analysis of Raf-1 and MEK binding sites in RKIP. GST-RKIP
deletion mutants were tested for binding of MEK-1 and Raf-1. PEB,
phosphatidylethanolamine binding motif.
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In summary, all these data suggested that RKIP mutants that are
defective for Raf-1 binding should also be compromised as inhibitors of
the ERK pathway. To examine this possibility, we generated RKIP
deletion mutants suitable for expression in mammalian cells. The
analysis of Raf-1 binding to the RKIP deletion mutants in mammalian
cells was consistent with the in vitro mapping of the main Raf-1
binding site to amino acids 77 to 108 (Fig.
6a). The N93 and the C93 RKIP mutants,
which both disrupt this domain, failed to coimmunoprecipitate with
Raf-1. However, C93 RKIP still contains the MEK binding domain. When
tested for suppression of Raf-mediated AP-1 induction, only N93 RKIP
showed a clear decrease in inhibitory activity (Fig. 6b). Since N93
RKIP is the only mutant that lacks both the Raf-1 and MEK interaction
domains, we conclude that either Raf-1 or MEK binding is sufficient for
suppression of the ERK pathway.

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FIG. 6.
RKIP binding to Raf-1 or MEK is sufficient for
inhibition. (a) Coimmunoprecipitation of RKIP deletion mutants with
Raf-1. FLAG-Raf-1 and hemagglutinin (HA)-RKIP or HA-RKIP deletion
mutants were coexpressed in COS cells. Lysates were immunoprecipitated
(IP) with anti-FLAG antibodies, and associated HA-RKIP proteins were
detected by Western blotting (WB) with anti-HA antibodies. PEB,
phosphatidylethanolamine binding motif. (b) The effect of RKIP deletion
mutants on Raf-induced AP-1 reporter gene expression. HA-RKIP mutants
were cotransfected with the Raf-1 kinase domain, BXB, and an
AP-1-luciferase plasmid.
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DISCUSSION |
In a previous study (26), we established that RKIP is a
physiologically relevant inhibitor of the Raf-1/MEK/ERK pathway. Overexpression of RKIP suppressed signaling through this pathway, whereas downregulation of RKIP enhanced it. RKIP did not inhibit Raf-1
catalytic activity but specifically interfered with the phosphorylation
of MEK by Raf-1. Since MEK was not inhibited and activated MEK mutants
could rescue ERK activation, we concluded that RKIP blocks the pathway
at the Raf-1/MEK interface. Here we describe the molecular mechanism of
RKIP's inhibitory function.
According to enzyme kinetic analysis, RKIP acted like a competitive
inhibitor of MEK phosphorylation. Since we have previously shown that
MEK phosphorylation requires physical interaction with Raf-1
(12), this mode of inhibition can be explained by RKIP's ability to dissociate Raf-1-MEK complexes. This interpretation is
supported by the observation that RKIP is a monomer and that artificial
oligomerization converts it into an activator, presumably by
cross-linking Raf-1 with its substrate MEK (data not shown). Surprisingly, mapping the domains in Raf-1 which are necessary for the
binding of RKIP and MEK revealed different sites. The same was true for
the binding sites of RKIP and Raf-1 in MEK. Thus, rather than acting as
a direct competitor for binding, RKIP must reduce the affinity of Raf-1
and MEK for each other, possibly by inducing a conformational change. A
potential precedent for such a mechanism is exemplified by an antibody
raised against an amino-terminal peptide of Raf-1. This antibody, whose
epitope is approximately 450 amino acids away from the MEK binding
site, dramatically reduced the association of Raf-1 with MEK
(9). An alternative but not exclusive possibility is that
RKIP binding to either Raf or MEK creates a steric obstacle for the
association of the other partner. The binding sites of RKIP and MEK in
Raf-1 and of RKIP and Raf-1 in MEK, respectively, are both located in the kinase domain. Although the crystal structure of neither Raf-1 nor
MEK is known, RKIP binds to a region in Raf-1 and MEK that by
comparison with other kinases (22) is expected to be part of
the small lobe. The small lobe is in close proximity to the substrate
binding domain in the large lobe, where Raf-1 interacts with MEK. Thus,
a sterical interference of RKIP with Raf-MEK binding seems conceivable.
Either hypothesis is compatible with our observations that although
Raf-1 bound to RKIP is disabled as MEK kinase, the presence of either
the Raf or the MEK binding domain in RKIP is sufficient for full repression.
In this context, it is important to note that (as shown by a detailed
analysis of ternary RKIP complexes) RKIP can bind either MEK or Raf-1
but not both simultaneously. This can be explained by the partial
overlap of their binding domains and predicts the existence of at least
two different pools of Raf-1 and MEK, one which is bound to RKIP and
one which is not. Only the latter pool is available for transducing
signals through the Raf/MEK/ERK cascade (Fig.
7). The size of this pool appears to be
determined by the expression levels of RKIP. Since
coimmunoprecipitation, pulldown, and immunodepletion experiments
apprehend only the steady-state levels of RKIP complexes, it is very
difficult to estimate the true size of this pool in the cell under any
condition. Our observation that MEK phosphorylation does not compromise
its ability to associate with RKIP in vitro suggests that MEK
sequestration by RKIP is not limiting. However, since mitogens decrease
the association of RKIP with Raf-1, RKIP-Raf-1 complexes seem to
provide the main interface for regulation. We have previously shown
that RKIP association with Raf-1 decreases concomitant with activation
of the ERK pathway during mitogenic stimulation and increases again
when ERK activity declines (26). Here we demonstrate that
the changes in RKIP association show an inverse correlation with Raf-1
activation (Fig. 4a and b). But Raf-1 catalytic activity per se does
not seem to play a major role, since RKIP bound inactive Raf-1 and activated Raf-1 mutants with comparable affinities (data not shown). Therefore, it is rather a mitogen-induced modification of Raf-1 or
RKIP, or both, that is responsible for this effect. The nature and role
of this modification are currently under investigation. The discovery
of RKIP and its inhibitory mechanism adds the selective and regulated
disruption of signaling complexes as a new concept to how the cell
controls its intricate signaling circuitry.

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FIG. 7.
Model of RKIP function. The activation of MEK by Raf-1
requires physical interaction between Raf-1 and MEK. RKIP binding to
either Raf-1 or MEK dissociates Raf-MEK complexes and thereby
interrupts MEK activation and downstream signaling. The binding of RKIP
to Raf-1 is negatively regulated by mitogens.
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We appreciate the critical reading and helpful comments by
members of the Beatson laboratories.
This work was supported by the CRC, by grants from the AICR, and by NIH
grant R01 GM55435 to J.M.S.
W.K. and J.M.S. contributed equally to the work.
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