Received 2 March 2001/Returned for modification 4 April
2001/Accepted 19 April 2001
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INTRODUCTION |
During the development of the small
nematode Caenorhabditis elegans, 131 of the 1,090 cells in
the worm embryo undergo programmed cell death (46, 47).
Genetic studies have identified mutations in 14 genes that specifically
affect this process. Recent findings suggest that these genes define an
evolutionarily conserved genetic pathway for programmed cell death from
C. elegans to mammals. These mutations divide the process of
programmed cell death into four distinct steps: determination of
whether individual cells will undergo programmed cell death or adopt
another fate (8, 9, 48); execution of the cell (8,
16); engulfment of the dying cell by a neighboring cell
(10, 15); and degradation of the dead, engulfed cell
(15, 45). Mutation in genes involved in the last three
steps affects all dying cells, whereas mutation in genes in the cell
death specification step affects only a small number of specific cell types.
Two genes that affect the death of only a small number of cells have
been identified. The sister cells of the neurosecretory motor neurons
(NMN) in the pharynx undergo programmed cell death depending on the
expression of two cell death specification genes, ces-1 and
ces-2 (8, 9, 48). Dominant gain-of-function mutations in the ces-1 gene and recessive loss-of-function
mutations in the ces-2 gene allow these two neuron cells to
survive ces-1 loss-of-function mutation adopts the wild-type
phenotype; however, it suppresses the phenotype of ces-2
loss-of-function mutation in NSM sister neurons. Therefore, the
ces-2 gene was suggested to encode a pro-apoptotic protein
that in turn represses the function of the antiapoptotic
ces-1 gene. Recently, the ces-2 gene was molecularly cloned, and the predicted protein possessed the
characteristic functional domains of basic region-leucine zipper (bZIP)
proteins (34). Not only did the amino acid sequence of
Ces-2 share significant homology with E4BP4 and PAR family proteins,
including HLF and TEF, in the basic DNA-binding domains, but also the
DNA sequence recognized by the Ces-2 protein was identical to that of
the PAR family and E4BP4.
On the other hand, B-cell-specific expression of a chimeric protein
that fused HLF to the transcription factor E2A resulted in formation of
human acute B-lineage leukemia (19, 21). This fusion
protein, E2A-HLF, retains the DNA binding specificity of its parental
HLF protein but has greater trans-activation and transformation potential (22, 58). Recently,
anti-apoptotic activity was suggested to underlie the mechanism of
transformation of the E2A-HLF gene (23). The close
homology of the basic DNA-binding domain of HLF to that of the Ces-2
protein of C. elegans further suggests the involvement of
E2A-HLF in the conserved cell death pathway. Since overexpression of
E2A-HLF in a factor-dependent cell line resulted in prolonged survival,
it may be that the targets of the E2A-HLF protein are involved in
antiapoptotic functions induced by cytokines. These target genes may be
normally under the control of a set of cellular regulators that
recognize similar DNA sequences on promoters as E2A-HLF.
CREB is a 43-kDa bZIP transcription factor composed of a C-terminal
basic DNA-binding domain, an adjacent leucine zipper dimerization domain, and a kinase-inducible transcriptional activation domain (36, 55). CREB binds to cyclic AMP (cAMP)-responsive
element (CRE) (TGACGTCA) both as a homodimer and as a heterodimer in
association with other members of the CREB/ATF family. Phosphorylation
of Ser133 within the kinase-inducible transcriptional
activation domain of CREB is required to induce the transcriptional
activity of the protein. Phosphorylation of Ser133
activates CREB, at least in part, by facilitating its binding to the
256-kDa CREB-binding protein (5, 13). The
CREB/CREB-binding protein complex can, in turn, interact with and
activate the basal transcriptional machinery.
The initial aim of this study was to identify cellular proteins that
bind to the Ces-2/E2A-HLF binding element (CBE) and are involved in
apoptosis regulation in hematopoietic cells. One protein that we
identified turned out to be a known bZIP protein, CREB. In this report,
we demonstrated that CREB is one major binding component of the
CBE-binding complexes in several different cell types. With
interleukin-3 (IL-3) dependent Ba/F3 cells as a model system, we
demonstrated that activation of the PKA/CREB pathway plays a role in
the survival activity of IL-3 and that part of this PKA/CREB pathway is
likely mediated through activation of some CBE-controlled antiapoptotic genes.
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MATERIALS AND METHODS |
Chemicals, cell lines and culture conditions.
Forskolin,
IBMX (3-isobutyl-1-methylxanthine), and Myr-PKI (myristoylated protein
kinase A [PKA] inhibitor 14-22 amide; catalog no. 476485) were
purchased from Calbiochem-Novabiochem Co. (San Diego, Calif.). IPTG
(isopropyl-
-D-thiogalactopyranoside), dimethyl sulfoxide, tetracycline and CdCl2 were purchased from Sigma
(St. Louis, Mo.). IL-3 and granulocyte-macrophage colony-stimulating factor (GM-CSF) were purchased from R&D Systems (Minneapolis, Minn.).
Ba/F3 and TF-1 are cytokine-dependent cell lines and were cultured in
media containing murine IL-3 and human GM-CSF, respectively, as
previously described (31, 57). 293T was cultured in the standard Dulbecco modified Eagle medium containing 10% fetal calf serum. PC12 cells were cultured in Dulbecco modified Eagle medium containing 5% fetal calf serum plus 10% horse serum and incubated in
10% CO2.
Screening of expression cDNA library with oligonucleotide
probes.
Expression cDNA libraries of human leukocytes, mouse
embryonic stem cells, and mouse 15-day embryos were purchased from
Clontech (Palo Alto, Calif.). Screening of expression cDNA libraries
with oligonucleotide probes was performed as described by Vinson et al.
(49), with slight modifications. The cDNA libraries were plated and incubated at 42°C for 4 h. The first nitrocellulose filters (Millipore, Bedford, Mass.) which had been presoaked in 10 mM
IPTG were overlaid on the plates and incubated for 4 h at 37°C,
and the duplicate filters were incubated for an additional 4 h at
37°C. After removal from culture plates, the nitrocellulose filters
were allowed to air dry for 15 min at room temperature and then
subjected to the refolding and binding procedures as described in the
vendor's instructions. Labeling of catenated CBE oligonucleotides with
[32P]dCTP was performed as previously described (49).
These positive plaques were further purified by rescreening three to
four times, and the insert was amplified by PCR and then sequenced.
Nuclear extract preparation and EMSA.
Cells were treated
under various conditions, and nuclear extracts were prepared as
described by Dignam et al. (7). Binding reactions were
performed as described by Chadosh (3). In brief, 5 µg of
nuclear extract was incubated at 30°C for 15 min with a
32P-end-labeled double-stranded oligonucleotide probe
(2 × 104 cpm) containing the consensus CBE sequence
(CBE probe, 5'-GCTACATATTACGTAACAAGCGTT-3'; underlined
nucleotides are the core sequence of CBE) or a 4-bp mismatched CBE
sequence (M4 probe,
5'-GCTACATAacACGTgtCAAGCGTT-3'; mutilated nucleotides are shown in lowercase). In competitive electrophoretic mobility shift assays (EMSAs), reactions were performed
in a total volume of 20 µl, and extracts were incubated with 10-, 100-, or 1,000-fold molar excess of competitive unlabeled oligonucleotides added 5 min prior to addition of the labeled probe.
Sequences of the competitors are shown in Table
1. Supershift experiments were performed
by incubating 1 µl of antiserum with nuclear extracts at 4°C for 30 min prior to the DNA binding reaction. Nondenaturing polyacrylamide
gels containing 5% polyacrylamide were run at 4°C in 0.5×
Tris-borate-EDTA. The gel was then dried under vacuum and analyzed by
autoradiography. UV cross-linking of CBE-binding complexes was
performed as described by Chadosh (3). Sequences of the
CBE-like element-containing oligonucleotides used in the competitive
EMSA are shown in Table 1.
Plasmid construction.
The reporter plasmids p3xCBE-Luc,
p3xCRE-Luc, and p3xM4-Luc were constructed by inserting three copies of
the CBE, M4 (see below), or CRE consensus sequence into the
BgIII site of the pGL2-promoter vector (Promega). The
sense-strand sequences of these oligonucleotides are as follows: CBE,
5'GATCTGCTACATATTACGTAACAAGCGTTG3'
(22); M4, 5'GATCTGCTACATAacACGTgtCAAGCGTTG3'
(22); and CRE,
5'GATCCAGAGATTGCCTGACGTCAGAGAGCTAGA3' (43a).
The Myr-AKT expression plasmid was kindly provided by Anke Klippel
(28). The expression plasmid for the catalytic subunit of
PKA (PKAc) was constructed by inserting the PKAc coding sequence into
the pCMV vector. The plasmid expressing the dominant negative mutant of
the PKA regulatory subunit (PKArDN), MT-REVAB-neo, which is
under the control of the mouse metallothionein 1 promoter, was a gift
from G. Stanley McKnight (6). The bcl-2
promoter-driven luciferase reporters containing wild-type (Bcl-2WT) or
mutant (Bcl-2mC) CRE sites were kindly provided by Linda Boxer
(54). The luciferase gene in Bcl-2WT was driven by a
promoter located in the bcl-2 genomic locus from nucleotides
1640 to
1286 (relative to the translation initiation codon ATG; the
CRE and CBE sites are located at positions
1559 and
1554,
respectively). Plasmid Bcl-2mCB was derived from Bcl-2mC by introducing
point mutations as shown in Table 1 into the putative CBE next to the
CRE site in the bcl-2 promoter. A G-to-T point mutation at
nucleotide 976 of CREB cDNA was introduced by PCR-assisted mutagenesis
to generate the pcDNA3-CREBR287L vector. The dominant negative effect
of CREBR287L on the wild-type CREB protein (52) was
verified by EMSA. Plasmid pTRE-HA-CREBR287L is a construct in which a
hemagglutinin epitope (HA)-tagged CREBR287L protein can be synthesized
under a Tet-off inducible system (Clontech). This expression vector was
constructed by first generating an intermediate vector
(pJ3HA-CREBR287L) in which a DNA sequence encoding the HA tag was fused
in frame to the 5' end of the CREBR287L cDNA. The pJ3H vector (42),
kindly provided by J. Chernoff, was used for this intermediate
step. The DNA fragment spanning the HA-CREBR287L cDNA sequence was then released from pJ3HA-CREBR287L by digestion with HindIII
and EcoRI, rendered blunt ended, and ligated into the
flushed EcoRI site of the pTRE vector (Clontech) to yield
the final construct, pTRE-HA-CREBR287L.
Establishment of Ba/F3 cell lines conditionally expressing
CREBR287L.
To generate Ba/F3 derivatives that express HA-CREBR287L
under the Tet-off inducible system (Clontech), Ba/F3 cells were
cotransfected with plasmids pTRE-HA-CREBR287L and pTet-off (Clontech)
by electroporation as previously described (4). After
transfection, cells were selected in medium supplemented with G418 (800 µg/ml) and tetracycline (2 µg/ml) for 2 weeks. G418-resistant
subclones were cultured in medium with or without tetracycline, and
cell lysates were subjected to Western blot analysis for the expression
and inducibility of HA-tagged CREBR287L. Two independent subclones, 4 and 8, expressing the highest levels of HA-CREBR287L under induced
conditions, were selected for further analysis. The control cell line
C3 was generated in the same way except that the pTRE-HA-CREBR287L
vector was replaced with the empty expression vector pTRE.
Antibodies and Western blot analysis.
Antibody specific to
CREB was previously described (18). Antibody specific for
CREB phosphorylated at Ser133 was purchased from Upstate
Biotechnology Inc. (Lake Placid, N.Y.). Monoclonal antibody to the HA
epitope (12CA5) was purchased from Boehringer Mannheim. Antibodies for
PKAr and PKAc were purchased from Transduction Laboratories (Lexington,
Ky.). Cell lysates were prepared and fractionated by standard sodium
dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Proteins
were then transferred onto a polyvinylidene difluoride nylon membrane
by Western blotting. The membrane was probed with antibodies and
visualized by an enhanced chemiluminescence system (Amersham,
Buckinghamshire, England) as previously described (31).
Transient transfection and annexin V staining.
Ba/F3 cells
cultured in IL-3-containing medium were washed with phosphate-buffered
saline (PBS) and resuspended in RF buffer (60) (2 mM
HEPES, 15 mM K2HPO4, 250 mM
D-mannitol, 1 mM MgCl2 [pH 7.2]) at the
density of 5 × 106 cells/ml. For each
electroporation, 200 µl of cell suspension was mixed with 7.5 µg of
expression plasmid and 2.5 µg of cotransfection marker
pEFCD16/CD7/STOP. Cells were then electroporated using the RF modular
of Gene Pulser II (Bio-Rad, Hercules, Calif.) at the following
settings: 300 V, 15 bursts, 1 s between bursts, 2 ms of burst
width, and frequency of 40 KHz. After electroporation, cells were
recovered in IL-3-containing medium for 12 h prior to cytokine
deprivation (for PKAc-expressing cells) or cadmium treatment (for
PKArDN-expressing cells). PKAc-expressing cells were grown in 0.5%
fetal bovine serum-containing, cytokine-free medium for 12 h;
PKArDN- and CREBR287L-expressing cells were grown in medium containing
0.5% fetal bovine serum and 5 U of IL-3 per ml with or without 2 µM
CdCl2 for 20 h. Cells were then washed with PBS,
stained with biotin-conjugated annexin V (Catalog no. 1828690;)
(Boehringer GmbH, Mannheim, Germany) and anti-CD16 antibody (MCA1193;
Serotec), stained with R-phycoerythrin-conjugated streptavidin (Jackson
ImmunoResearch Laboratories) and fluorescein isothiocyanate-conjugated secondary antibody (Jackson ImmunoResearch Laboratories), and analyzed
by flow cytometry (4). In flow cytometry analysis, CD16-positive cells were gated to analyze their annexin V staining pattern.
Lipofection and luciferase assay.
PC12 (4 × 105) or 293 (2 × 105) cells were
transiently transfected with 1 µg of the reporter plasmid DNA and
various amounts of the expression plasmid (PKAc [0.1 µg] or
pcDNA-3cREBR287L [0.5 µg]) by using Lipofectamine (Life Science,
Gaithersburg, Md.) as instructed by the vendor. For IBMX and forskolin
stimulation experiments, 1 µM IBMX and 100 µM forskolin were added
to the culture medium. After 20 h, cell were washed with cold PBS
and lysed in 40 µl of reporter lysis buffer (Promega) for 10 min on ice. Lysates were centrifuged at 15,000 rpm for 10 min. Twenty microliters of the supernatant was added to 100 µl of luciferase assay buffer (Promega) and applied to a luminometer (TD20/20; Turner
Designs Instruments, Promega) to detect luciferase activity. Transfection of plasmid into Ba/F3 cells for luciferase assays was done
as described above for annexin V staining analysis.
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RESULTS |
Multiple CBE-binding complexes in mammalian cells.
To identify
the evolutionarily conserved Ces-2/E2A-HLF homologues in mammalian
cells, we used a sensitive EMSA to explore various nuclear extracts and
determine whether any of the nuclear factors could form a complex with
CBE. The nuclear extract from Ba/F3 bound to the CBE oligonucleotide
probe and formed multiple binding complexes in the native
polyacrylamide gel (Fig. 1, lane 1). A
complete inhibition was observed with an unlabeled CBE probe (Fig. 1,
lane 2) but not with a 4-bp mismatched M4 probe (see Materials and
Methods) (Fig. 1, lane 3), thus verifying the sequence specificity of
these complexes. The fast-migrating group of complexes was constantly
present in all extracts tested, including extracts from human
GM-CSF-dependent TF-1 (lane 4), murine IL-2-dependent HT-2 (lane 5),
human cervical carcinoma HeLa (lane 6), human hepatocarcinoma HepG2
(lane 7), murine fibroblast NIH 3T3 (lane 8), and Chinese hamster ovary
carcinoma CHOP (lane 9) cell lines, and in extracts from thymocytes and
splenocytes of BALB/c mice (lanes 10 and 11) and thymocytes of porcine
origin (lane 12). The slow-migrating group of complexes was detectable
in some extracts and was barely detectable in others, including HeLa,
NIH 3T3, and mouse spleen cells (lanes 6, 8, and 11).

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FIG. 1.
Multiple CBE-binding complexes exist in mammalian cells.
Nuclear extracts were prepared from various cell lines and tissues (as
indicated at the top) and subjected to EMSA with a
32P-labeled CBE probe. A 100-fold excess of unlabeled CBE
probe (lane 2) or mutant CBE probe M4 (lane 3) was used to compete
(Comp.) for the formation of specific complexes. Multiple binding
complexes are categorized as slow-migrating (S) and fast-migrating (F')
groups. Each group is composed of at least two to three complexes. Thy,
thymocytes; Spl., splenocytes.
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Very little binding activity was detected in ion-free buffer. A drastic
increase of binding activity was observed in buffers containing KCl
from 50 to 200 µM, with a peak at around 133 µM (data not shown).
All of these complexes seemed to require an optimal ionic concentration
similar to that recommended for the binding of E2A-HLF to CBE, i.e.,
133 mM (19). None of these binding complexes were heat
resistant, and they rapidly diminished when the temperature exceeded
55°C (data not shown).
Identification of CREB in CBE-binding complexes.
To explore
the molecular identities of these CBE-binding proteins, we applied UV
to cross-link them to 32P-labeled CBE and then fractionated
the proteins by SDS-PAGE to determine their molecular weights. As shown
by EMSA, UV cross-linking did not interrupt the pattern of CBE-binding
complexes (Fig. 2A, lanes 1 and 2) and
binding specificity (lane 3). SDS-PAGE showed at least two major bands
of 46 and 50 kDa that bound with the 32P-labeled CBE probe
(Fig. 2A, lane 4). The 32P labeling of these two components
by UV cross-linking was drastically inhibited by a 100-fold excess of
unlabeled CBE (Fig. 2A, lane 5) but only slightly affected by the M4
probe (lane 6). From the sizes of these CBE-binding components and the
sequence homology between CBE and the CRE, with only two nucleotide
alterations, at the
3 and +3 positions of the core dyad symmetry, we
postulated that one of the 46-kDa proteins was CREB.

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FIG. 2.
CREB exists in CBE-binding complexes. (A) Molecular
weight determination of CBE-binding proteins by UV cross-linking. The
nuclear extract of Ba/F3 cells was mixed with a labeled CBE probe and
irradiated with (+) or without ( ) short-wavelength UV for 10 min (see
Materials and Methods) in the presence (lanes 3 and 5) or absence
(lanes 2 and 4) of competitor (Comp.) CBE or M4 (lane 6). One half of
the sample was analyzed by EMSA (lanes 1 to 3), and the other half was
analyzed by SDS-PAGE (lanes 4 to 6). Positions of molecular weight
markers are marked at the left of lane 4. (B) Nuclear extracts prepared
from Ba/F3 (lanes 1 to 3) and TF-1 (lanes 4 to 6) cells or in
vitro-synthesized CREB (lanes 7 to 9) were subjected to EMSA. Rabbit
preimmune serum (Pre.) or polyclonal anti-CREB antibody (Ab) (CREB) was
used to perform supershift experiments. The position of the
supershifted binding complex is indicated by a thick arrow. In the
preimmune serum, there is an undetermined CBE-binding activity that did
not supershift the CREB-containing complex but comigrated with the
supershifted CREB-CBE complex. The positions for slow- and
fast-migrating groups (S and F) are indicated as described in the
legend to Fig. 1.
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To verify our hypothesis, we performed three independent experiments.
First, we demonstrated the presence of CREB in the fast-migrating group
of CBE-binding complexes of hematopoietic cells by supershifting the
specific complexes with anti-CREB antibody. Nuclear extracts from both
Ba/F3 and TF-1 cells formed multiple complexes with the
32P-labeled CBE oligonucleotide (Fig. 2B), and complexes in
the fast-migrating group were specifically supershifted to an upper position (Fig. 2B, lanes 3 and 6) with anti-CREB antibody. Incubation with the preimmune serum gave an extra binding complex that comigrated with the supershifted band but did not affect the CBE complexes (Fig.
2B, lanes 2 and 5; see also lane 8). Second, the complexes in the
fast-migrating group were suggested to be the complexes of CREB homo-
or heterodimers. The in vitro-translated CREB formed a complex with the
CBE probe that comigrated with one of the complexes of the Ba/F3
nuclear extract (Fig. 2B, lane 7). The complex of the in
vitro-translated CREB with CBE was supershifted in the presence of
anti-CREB antibody but not by preimmune serum (Fig. 2B, lanes 8 and 9).
However, CREB did not distinguish between the canonical CRE (underlined
in the sequence that follows)
(5'-AGAGATTGCCTGACGTCAGAGAGCTAG-3') and
CBE (5'-TTACGTAA-3') and bound to both
sequences equally well (data not shown). The binding complex of CREB
with CBE was efficiently competed by the CRE oligonucleotide and vice
versa (data not shown), suggesting that CREB binds to both elements
with similar affinities.
Finally, we demonstrated that the recombinant CREB protein bound to CBE
by expression screening (Table 2). We
used a 32P-labeled CBE oligonucleotide to screen three
expression libraries in Escherichia coli and demonstrated
the binding of CBE by CREB in a mouse embryo library (Table 2). HLF and
TEF (the PAR family members), ATF-2, E4BP4 and C/EBP
were also
identified during these screening experiments (Table 2). These findings
suggested that there are at least four protein families that are able
to bind CBE and that all may be involved in mediating CBE-dependent transactivation.
Activation of CBE reporter genes by cAMP and PKA signals.
Although CREB binds effectively to CBE, it is not clear whether CBE can
indeed mediate CREB-dependent gene transactivation. To assess this
possibility, we first examined whether elevation of cellular cAMP
levels, one way to activate CREB, could stimulate the transcription of
a CBE-driven luciferase reporter gene. As shown in Fig.
3A, treatment of transfected cells with
forskolin, a cAMP-elevating agent, plus IBMX, an inhibitor of
phosphodiesterase, increased the transcription activity of the CBE
reporter by 2-fold (in 293T cells) or 50-fold (in PC12 cells). We next
examined whether a similar effect could be achieved in cells
overexpressing the constitutively active form of PKA, an upstream
activator of CREB. The overexpressed PKAc was presumably constitutively
active, due to the shortage of PKAr in the transfected cells. Figure 3B
shows that in PC12 cells, PKAc can significantly activate the
CBE-driven reporter compared to the reporter of the inactive CBE
mutation M4 or the vector alone; however, the effect is not as dramatic as that of the CRE-driven reporter. A similar transactivation effect by
PKAc on the CBE reporters was observed in experiments using
IL-3-dependent Ba/F3 cells (Fig. 3C). Inclusion of the dominant negative mutant of CREB, CREBR287L, in the transactivation assays antagonized the stimulation effect of PKAc (Fig. 3B, lanes 3 and 6;
Fig. 3C, lanes 2 to 4). Thus, these data suggested that the PKA/CREB
pathway is able to activate the CBE-driven transcription in
hematopoietic and nonhematopoietic cells.

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FIG. 3.
Transcriptional activation of CBE reporter genes by the
cAMP/PKA/CREB signaling pathway. (A) Activation of CBE reporter genes
by cAMP-elevating agents. 293T and PC12 cells were transfected with
p3xCBE-Luc (1 µg) and treated with or without forskolin plus IBMX (as
indicated at the bottom). (B) CREB-dependent activation of the CBE
reporter gene by PKA in PC12 cells. PC12 cells were transfected with
the PKAc expression plasmid (0.1 µg) and various luciferase reporter
plasmids (1 µg of each), together with dominant negative mutant
CREBR287L (1 µg). (C) CREB-dependent activation of CBE reporter genes
by PKA in Ba/F3 cells. Ba/F3 cells were electroporated with the PKAc
expression plasmid (0.45 µg) and CBE luciferase reporter plasmid (3 µg), together with CREBR287L (0, 1.5 and 4 µg; shown as a
triangle). Twenty hours after transfection, cell lysates were prepared
and analyzed by luciferase assays. Data shown are representative
results from three independent experiments performed in duplicate (in
PC12 cells) or quadruplicate (in Ba/F3 cells). Luciferase activities
are plotted in arbitrary units per microgram of total protein.
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PKA-dependent CREB phosphorylation and cell survival in
hematopoietic cells.
Phosphorylation of CREB at Ser133
is essential for the transcriptional activity of CREB. In this study,
CREB was shown to be one of the major CBE-binding proteins in
hematopoietic cells and was suggested to be required for activation of
CBE-driven genes. We next wished to determine whether CREB could be
phosphorylated at Ser133 by cytokines in cytokine-dependent
cell lines. Rapid induction of phosphorylation of CREB by cytokine was
demonstrated in TF-1, HT-2, Ba/F3, and C2GM cells by their own
essential cytokines (data not shown). All cytokines tested induced a
rapid phosphorylation of CREB at Ser133, within 5 to 10 min. Treatment of Ba/F3 cells with PKI (Fig. 4A, lanes 2, 3, and 4) partially
decreased the phosphorylation level of CREB after IL-3 stimulation. A
minor signal, representing the phosphorylated ATF-2 protein (Fig. 4A),
was also induced by IL-3 and suppressed by PKI. These data were
consistent with the notion that the phosphorylation of CREB at
Ser133 induced by IL-3 was, at least partly, through the
PKA pathway.

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FIG. 4.
IL-3 induces CREB phosphorylation and survival function
partly via the PKA pathway. (A) IL-3 induces PKA-dependent CREB
Ser133 phosphorylation. Cytokine-starved Ba/F3 cells were
pretreated with dimethyl sulfoxide (lanes 1 and 2) or PKI (lanes 3 and
4) for 30 min before being restimulated with IL-3 (IL3). After 5 min of
stimulation, cells were harvested and analyzed by Western blot analysis
with antibodies specific to phosphorylated CREB at Ser133
(-CREB) and to all forms of CREB (CREB). The star indicates the
position of the phosphorylated ATF-2. (B) Increase of survival of Ba/F3
cells by cAMP-elevating agents. Viable cell number was measured by
trypan blue staining after 18 h of incubation in cytokine-free
medium without ( ) or with (+) forskolin (FsK 100 µM) plus IBMX.
Numbers of viable cells are presented as percentages of the number of
cells initially seeded. Results shown are means ± standard
deviations from two independent experiments performed in duplicate. (C)
Decrease of cell viability by PKI. Ba/F3 cells were cultured in
IL-3-containing medium supplemented with various doses of Myr-PKI
(lanes 2 and 3, 10 and 20 µM). Cells cultured in cytokine-free medium
were included as a negative control (lane 4). Numbers of viable cells
under various treatments were determined and are presented as a
percentage of the number of cells initially seeded. Shown are
representative results from three independent experiments performed in
duplicate.
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We next investigated the potential role of the PKA/CREB pathway in
apoptosis regulation in hematopoietic cells. Ba/F3 cells were treated
with various doses of forskolin in the absence of murine IL-3, and only
at levels higher than 100 µM was forskolin able to suppress cell
death induced by cytokine deprivation (data not shown). IBMX further
potentiated the death prevention effect of forskolin (Fig. 4B). The
cAMP analogues dibutyryl- and 8-bromo-cAMP also showed an ability to
prolong cell survival comparably to forskolin plus IBMX (data not
shown). On the other hand, treatment of Ba/F3 cells with PKI in the
presence of IL-3 significantly suppressed cell viability and increased
apoptosis in a dose-dependent manner (Fig. 4C). These data suggested
that activation of the cAMP/PKA/CREB pathway could possibly antagonize
apoptotic signals in hematopoietic cells.
The PKA/CREB pathway plays a role in IL-3's survival
activity.
To prove that the PKA/CREB pathway is involved in the
IL-3-dependent survival signal, we next explored the effects of the dominant negative forms of CREB and PKA in Ba/F3 cells. Since CREBR287L
forms a dimer with CREB/ATF family members and cannot bind to DNA,
experiments using this dominant negative construct provided a stringent
test for whether CREB is indeed part of the survival signal of IL-3.
CREBR287L and PKArDN were transiently transfected into Ba/F3 cells
along with a green fluorescence protein (GFP) or CD16 marker plasmid.
In the regular culture media, both CREBR287L (Fig.
5A) and PKArDN (Fig. 5C, upper right)
were expressed at a significant level in the GFP-positive population.
In the presence of cadmium ion, the PKArDN levels were further
increased due to increased transcription of the metallothionein
promoter (Fig. 5C, lower right). An annexin V staining assay revealed
that CREBR287L and PKArDN both effectively enhanced the percentage of
apoptotic Ba/F3 cells in IL-3-containing culture medium. Apoptosis increased from 21 to 35% for cells transfected with CREBR287L (Fig.
5B) and from 8 to 29% for PKArDN-transfected cell (Fig. 5D, top). In
the presence of cadmium ion, apoptosis increased from 14 to 48% (Fig.
5D, bottom). The promoter of the metallothionein gene, which drives
PKArDN expression, was leaky, and both PKArDN protein expression and
apoptosis enhancement were observed in the absence of cadmium ion (Fig.
5C and D).

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FIG. 5.
Dominant negative forms of CREB and PKA reverse the
antiapoptotic effect of IL-3 in Ba/F3 cells. (A and C) Expression of
CREBR287L (A) and PKArDN (C) in Ba/F3 cells. Vectors pcDNA-3,
pcDNA-3/CREBR287L, and MT-REVAB-neo (indicated as PKArDN)
(7.5 µg of each construct) were transfected into Ba/F3 cells along
with 2.5 µg of pCMV-GFP. Cells were allowed to express these proteins
for 20 h in IL-3-containing medium without (A; C, top) or with (C,
bottom) 2 µM cadmium chloride. Solid peaks indicate cells stained
with control immunoglobulin G (IgG). Open peaks indicate cells stained
with anti-CREB antibody (A) or anti-PKAr antibody (C). Open peaks in
dotted lines are cells not expressing GFP (GFP ), and solid lines are
cells expressing GFP (GFP +). Transfection efficiency was 10 to 12%.
(B and D) Dominant negative forms of CREB (B) and PKAr (D) enhance
apoptosis of Ba/F3 cells in the presence of IL-3. After transfection
with the marker pCD16/7/Stop (2.5 µg) and the pcDNA-3 vector (7.5 or
18 µg), pcDNA-3/CREBR287L (18 µg), or MT-REVAB-neo (7.5 µg), cells were cultured in IL-3 containing medium with or without 2 µM cadmium chloride for 20 h. The percentages of apoptotic
(annexin V-positive) cells in the transfected populations (CD16
positive) were analyzed and quantified as described in Materials and
Methods. One set of representative data from three independent
experiments is shown.
|
|
The role of CREB in IL-3's survival signal was also examined in Ba/F3
derivatives where the CREBR287L mutant was conditionally induced. For
this experiment, two stable lines expressing CREBR287L, under the
Tet-off inducible promoter (Clontech), were established. When
tetracycline was removed, the expression level of CREBR287L was
increased dramatically in both stable cell lines 4 and 8, but not in
the control cell line C3 (Fig. 6A, top). Of note, in both cell lines 4 and 8, we also observed an increased expression of a protein band that
comigrated with the endogenous CREB and was recognized by CREB but not
by the HA antibody (Fig. 6A). EMSA with
nuclear extracts made from these stable lines revealed that expression
of CREBR287L by removing tetracycline from the culture medium
dramatically decreased the level of fast-migrating complexes of CBE in
both cell lines 4 and 8 and had no significant effect on the level of
the slow-migrating complexes (Fig. 6B, top). The fast-migrating CBE
complex in cell line C3 was not significantly altered by tetracycline
deprivation. Serving as an internal control, the level of GATA-1
binding complex did not change in any cell lines tested regardless the
presence or absence of tetracycline (Fig. 6B, bottom). These data
indicated that we have successfully established two stable cell lines
wherein the CREB-containing CBE-binding complexes can be specifically
reduced by expression of the CREBR287L mutant.

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FIG. 6.
Inducible expression of CREBR287L reduces CBE binding
and viability of Ba/F3 cells. (A) Two Ba/F3 derivatives (clones 4 and
8) stably overexpressing CREBR287L under a Tet-off inducible system
were established. The expression level of HA-CREBR287L (indicated by an
arrowhead) in clones 4 and 8 in medium with (+) or without ( )
tetracycline (Tet) was analyzed by immunoblotting with anti-HA and
anti-CREB antibodies. C3, a Ba/F3 derivative expressing pTRE vector
alone, is included as a negative control. (B) Decrease of CBE-binding
activity in cells overexpressing CREBR287L. Nuclear extracts were
prepared from each cell clone under conditions (with or without
tetracycline) as indicated, and EMSA was then performed as described
for Fig. 1 with a CBE (top) or GATA-1 (as an internal control; bottom)
probe. The slow- and fast-migrating complexes are indicated as S and F,
respectively. The asterisk indicates the position of the GATA-1
complex. (C) Suppression of cell viability by CREBR287L in stable
lines. Cells cultured in the presence (+) or absence ( ) of
tetracycline for 72 h were washed and seeded in medium without
IL-3. Sixteen hours after IL-3 depletion numbers of viable cell in each
culture group were determined and are presented as percentages of the
number of cells initially seeded. The data presented are averages from
three independent experiments done in duplicate. *, 0.001 < P < 0.01 compared to lane 3; **, 0.001 < P < 0.01 compared to lane 5.
|
|
Consistent with results obtained from the transient assay (Fig. 5A and
B), Ba/F3 cells with induced expression of CREBR287L were more
sensitive to cytokine withdrawal-induced apoptosis (CWIA) (Fig. 6C).
However, unexpectedly, with such a prominent induction of CREBR287L in
both clones 4 and 8 (Fig. 6A), its effect on CWIA was no better than
that observed in the transient assay. This suggests that activation of
CREB plays only a partial role in IL-3's survival signal.
Alternatively, the induced expression of the CREB or a CREB-like
molecule through an unknown mechanism when the CREBR287L mutant was
induced (Fig. 6A) may have compensated for the dominant negative effect
of CREBR287L in these stable clones. Taken together, these data suggest
that both PKA and CREB play a role in the antiapoptotic activity of
IL-3 in Ba/F3 cells.
Next, we examined whether constitutive activation of PKA would
antagonize IL-3 removal-induced apoptosis. To address this issue, PKAc
was transfected into Ba/F3 cells together with the marker gene, either
the GFP or CD16/7 chimeric protein expression plasmid. The level of
PKAc increased dramatically in the GFP-positive population compared to
that in the GFP-negative population (Fig. 7A, right). The annexin V staining assay
revealed that IL-3 depletion caused death of about 50% of control
Ba/F3 cells via apoptosis (Fig. 7B, Vector). However, the expression of
PKAc significantly reduced apoptosis to 17% (Fig. 7B, PKAc). To
examine whether CREB was a downstream effector of PKA in this assay
system, we expressed PKAc together with the dominant negative
mutant CREBR287L into Ba/F3 cells, and apoptosis percentage was
monitored with annexin V staining. CREBR287L partly diminished the
protection effect of PKAc, and the percentage of apoptotic cells
increased from 17 to 40 (Fig. 7B). Taken together, our results
indicated that CREB indeed functions as a part of the survival signals
activated by PKA.

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FIG. 7.
Expression of PKAc suppresses CWIA of Ba/F3 cells. (A)
Expression of PKAc in transiently transfected Ba/F3 cells. Ba/F3 cells
were transfected with pCMV vector or PKAc (7.5 µg of each), as
indicated together with pCMV-GFP (2.5 µg). At 20 h after
transfection, cells were analyzed for expression of PKAc by flow
cytometry. The solid peaks indicate cells stained with rabbit normal
serum, and the open peaks indicate cells stained with rabbit anti-PKAc
antibody. The open peaks in dotted lines indicate the GFP-negative
populations (GFP ), and solid lines show the GFP-positive populations
(GFP +). Transfection efficiency was 10 to 12%. IgG, immunoglobulin G. (B) Suppression of CWIA by expression of PKAc. After transfection with
the marker pCD16/7/Stop (2.5 µg) and pCMV vector or PKAc expression
plasmid (2 µg of each) with or without CREBR287L (18 µg), cells
were cultured in the absence of IL-3 for 20 h prior to being
stained with anti-CD16 antibody and annexin V and analyzed by flow
cytometry. Apoptotic percentages are as indicated at the upper right.
Transfection efficiency was around 15%. One set of representative data
from three independent experiments is shown.
|
|
Identification of bcl-2 as a CBE containing survival
gene.
To investigate whether the CREB-dependent antiapoptotic
effect involves activation of any CBE-containing survival gene(s), we
first searched the DNA database for an apoptosis-related gene(s) whose
promoter contains the consensus CBE or a CBE-like element. We thus
identified a few candidate genes, including bcl-2
(54), A1 (14), D1 cyclin (17),
and slug (44) (Table 1). Next, we examined
whether the CBE-like elements in these candidate genes bound to known
CBE-binding proteins (e.g., HLF) in vitro. To address this issue, we
examined by competitive EMSA whether any of these CBE-like elements
competed with the 32P-labeled consensus CBE (sequence is
shown in Table 1) for binding to the
HLF protein, a truncated form
of HLF containing only the DNA-binding domain. The CBE of the C. elegans ces-1 gene that is known to be recognized by the Ces-2
protein (i.e., one of two authentic CBE-binding proteins)
(35) was included here as a positive control. As shown in
Fig. 8A and summarized in Table 1,
HLF
bound to the consensus CBE, and its binding was completely abolished by
the presence of a 10-fold molar excess of the same unlabeled competitor
(Fig. 8A, CBE). Under the same conditions, the CBE of the
ces-1 gene did not manifest any significant competition until 1,000-fold excesses of oligonucleotides were present in the
assay, suggesting that
HLF bound to the CBE of the ces-1 gene with low affinity (Fig. 8A, CES-1). On the other hand, among the
mammalian genes tested, only the CBE-like element of bcl-2 showed a competition ability similar to that of the ces-1
CBE site (Fig. 8A, Bcl-2mC). The CBE-like elements from the D1 cyclin, slug, and A1 genes (Fig. 8A) were all incapable of competing
with the consensus CBE site for binding to
HLF even at a 1,000-fold excess. Interestingly, mutation in the CBE sequence of the
bcl-2 gene abrogated the ability to compete for binding to
HLF (Fig. 8A, Bcl-2mCB). These results suggest that the
bcl-2 promoter contains a low-affinity CBE site whose
affinity is similar to that of ces-1 CBE site. Next, using
the same approach described above, we tested whether CREB can also bind
to the CBE site of the bcl-2 gene. As shown in Fig. 8B,
although CREB bound to the consensus CBE sequence with moderate
affinity, CREB, like
HLF, bound to the CBEs of the ces-1
and bcl-2 (i.e., Bcl-2mC) genes with low affinity (Fig. 8B).
The same CBE mutation (Bcl-2mCB) also abolished the binding ability of
the CREB protein (Fig. 8B). The CBE-like element of the slug gene
served as a negative control which did not bind to CREB at all (Fig.
8B, Slug). In conclusion, the human bcl-2 gene contains a
low-affinity CBE site in its promoter, and this CBE site can also be
recognized by CREB in vitro.

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FIG. 8.
The CBE site in the bcl-2 promoter is
important for IL-3 inducibility in hematopoietic cells. (A and B)
Competition for HLF (A) or CREB (B) binding to the CBE consensus by
various CBE-like sequences. The consensus CBE sequence was labeled with
32P and incubated with either HLF (A) or CREB (B) in the
presence of a 10-, 100-, or 1,000-fold molar excess (indicated as a
triangle) of competitive (Comp.) CBE-like sequences. The genes from
which the competitive CBE-like sites were are indicated above the
triangles, and their sequences are shown in Table 1. The competitive
EMSAs were repeated three times, and a representative set of data is
shown. (C and D) Both CRE and CBE contribute to PKA (C) or IL-3 (D)
stimulation of bcl-2 reporter activity. (C) Ba/F3 cells were
electroporated with various bcl-2 reporters as indicated
together with a PKAc (+PKA) or control ( PKA) expression vector.
Twenty hours after transfection, cell lysates were prepared and
analyzed by luciferase assays. (D) Same as panel C except that the PKA
expression vector was omitted, and the transfected cells were left in
medium with or without IL-3 prior to being analyzed for luciferase
activity. WT, mC, mCB denote reporter plasmids Bcl-2WT, Bcl-2mC, and
Bcl-2mCB, respectively (see Materials and Methods). The data presented
are averages from three independent experiments performed in
duplicate.
|
|
We next investigated whether the bcl-2 CBE responded to PKA
and/or IL-3 signaling in Ba/F3 cells. For this experiment, Bcl-2WT, Bcl-2mC, or Bcl-2mCB was cotransfected with the PKAc or control vector
into Ba/F3 cells. As shown in Fig. 8C, cotransfection with the PKAc
expression plasmid stimulated Bcl-2WT activity about threefold (Fig.
8C, WT). Clustered point mutations that abolished the CRE site (Bcl-2mC
[Table 1]) resulted a reporter that was still responsive to PKAc
stimulation, albeit to a lesser degree (~2-fold) (Fig. 8C, mC). In
contrast, Bcl-2mCB (Table 1) showed almost no response to PKAc (Fig.
8C, mCB). These results suggest that both CRE and CBE sites play a role
in PKA stimulation of bcl-2 promoter activity. Next, using a
similar reporter assay, we examined the role of these two DNA elements
in IL-3's effect on bcl-2 promoter activity. Figure 8D
shows that a similar effect is observed in this assay. That is, the
luciferase activity of Bcl-2WT was stimulated ~6-fold by IL-3;
IL-3's stimulatory effect was diminished to ~4-fold for Bcl-2mC,
whereas Bcl-2mCB was nearly refractory to IL-3 stimulation. Taken
together, these data suggest that both CRE and CBE contribute to IL-3
activation of the bcl-2 promoter and that these two sites
are likely regulated by the PKA/CREB pathway.
 |
DISCUSSION |
The CBE is a DNA sequence recognized by death specification gene
product Ces-2, leukemic oncoprotein E2A-HLF, adenovirus E4 gene
transcription factor E4BP4, and PAR family transcription factors. Due
to the functional and structural conservation of Ces-2 and E2A-HLF in
the regulation of apoptosis, their downstream targets, the CBE-driven
genes, are also suggested to be involved in death control. The initial
purpose of this study was to look for cellular CBE-binding proteins
that may regulate the same downstream targets as those of E2A-HLF and
may be involved in positive or negative regulation of CWIA in
hematopoietic cells. In this study, we have identified multiple
CBE-binding complexes in nuclear extracts from various mammalian cells
and tissues. A complex containing CREB was one of the major complexes
in most of the cell lines and tissues tested. Consistent with this
finding, by screening the E. coli expression cDNA libraries
with radiolabeled CBE probes, we identified CREB as one of the
CBE-binding proteins. Of note, among the CBE-binding proteins (Table
1), only E4BP4 and CREB have been demonstrated to be involved in
apoptosis regulation of hematopoietic cells (reference 20
and this study). The role of C/EBP
and HLF/TEF families in death
control remains to be investigated.
We also demonstrated that the CBE-driven reporter gene is able to
respond to PKA activation by either forskolin treatment or gene
transfer and that this transactivation effect is CREB -dependent.
Although the binding affinities of CREB to CBE and to CRE were
indistinguishable in vitro (data not shown), PKA induced a better
activation of the CRE-driven reporter than of the CBE-driven reporter.
While the exact nature of this difference is not clear, it may suggest
that additional factors are involved in PKA regulation of CBE- or
CRE-mediated gene transcription. Of note, although a similar sequence
motif named CRE-2 (TGCGTCA) was shown to be recognized by CREB and this
binding motif alone conferred IL-3 inducibility on a heterologous
promoter (53), neither the consensus CBE nor the CRE motif
configured in the same way harbored this property (data not shown). A
similar result was also observed with a putative CRE site located in
the egr-1 promoter. That is, deletion of this element
abolished the IL-3 inducibility of the egr-1 reporters,
whereas a construct containing this DNA element alone upstream of the
thymidine kinase promoter and chloramphenicol acetyltransferase gene
failed to respond to IL-3 stimulation (29, 40). Together,
these results indicated that sequences flanking the CRE or CBE site
play a modulatory role in the transcriptional responses of these two
DNA elements.
Like IL-3, other hematopoietic growth factors such as GM-CSF and IL-2
also induce Ser133 phosphorylation of CREB (reference
29 and our unpublished results). Although multiple
signaling pathways triggered by a diverse array of stimuli were
reported to lead to Ser133 phosphorylation and activation
of CREB (see reference 43 for a review), the mechanism by
which hematopoietic growth factors stimulate serine phosphorylation of
this transcription factor is still unclear. In this report, we provide
evidence that IL-3-stimulated CREB phosphorylation at
Ser133 involves activation of the PKA pathway (Fig. 4A).
Furthermore, we observed that the pharmacological inhibitors of
phosphatidylinositol 3-kinase and SAPK2/p38 both diminished CREB
phosphorylation induced by IL-3 stimulation (our unpublished data),
suggesting that a combination of pathways regulate CREB activity in
IL-3-dependent cells.
Elevation of intracellular cAMP contents by pharmacological agents
induces apoptosis of some cell systems (26, 32) but triggers the opposite response, i.e., protects against cell death, in
many other cell types, including MC/9 myeloid cells (41), neutrophilic polymorphonuclear leukocytes (37, 38, 51), U937 promonocytic leukemia cells (12), primary hepatocytes
(11), T-cell hybridomas (24, 30), and RAW
264.7 macrophages (50). Consistent with the latter case,
we observed that activation of PKA, a downstream effector of cAMP, by
treatment of cells with chemical inducers or by ectopic expression of
the catalytic subunit of PKA prolonged survival of Ba/F3 cells in the
absence of IL-3. Our results together with others thus suggest that PKA
is one cellular target frequently modulated by a variety of stimuli
and, depending on the cellular context, activation of PKA leads to either cell survival or cell death. On the other hand, CREB is one
important downstream factor activated by PKA. Constitutive activation
of CREB protects human melanoma cells from UV-induced apoptosis
(56) and contributes to the acquisition of the malignant phenotype (25). Recent studies with transgenic and
knockout mice further demonstrated that CREB and its paralog, CREM, are important for cell survival. CREM-deficient mice, for example, exhibit
a spermatogenesis defect secondary to enhanced apoptosis of germ cells
(2). Overexpression of a dominant negative CREB transgene,
moreover, induces apoptosis in T cells following growth factor
stimulation (1). With IL-3-dependent Ba/F3 cells as a
model system, we demonstrated that activation of the PKA/CREB pathway
plays a role in the survival activity of IL-3.
The bcl-2 gene was recently demonstrated to be the target of
the antiapoptotic effect of CREB in neuronal tissues (39)
and in murine T helper cells (59), through a conserved CRE
in the bcl-2 promoter. Intriguingly, our search for the
CBE-containing apoptosis-related genes discovered that there is a
low-affinity CBE site partially overlapping with the CRE located in the
downstream regulatory element of the bcl-2 promoter (Table
1) (54). We further demonstrated that CREB binds to this
CBE site with an affinity similar to that of its binding to the
ces-1 CBE element, and that both CRE and CBE elements
contribute to PKA or IL-3 activation of the bcl-2 reporter
expression. Together, these results suggest that the bcl-2
gene is likely one cellular target of the CREB-containing CBE complex.
The in vivo role of this CBE complex on bcl-2 gene transcription and its possible regulation by the PKA pathway remain to
be determined. The Bcl-2 family proteins including Bcl-2 itself, Bcl-XL, and Mcl-1 were reported to be involved in the survival activity
of IL-3 (4, 27, 33). While the detailed survival pathway
triggered by IL-3 stimulation remains to be determined, our results
suggest that the PKA/CREB pathway plays a role in this process and that
part of this PKA/CREB pathway is likely mediated through activation of
some CBE-controlled antiapoptotic genes.
This work was supported in part by an intramural fund from Academia
Sinica, Taiwan (J.J.-Y.Y.) and grants NSC87-2314-B-001-016 and
NSC88-2314-B-001-018 from the National Science Council of Taiwan
(J.J.-Y.Y.).
W. Chen and Y.-L. Yu contributed equally to this work.
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