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Molecular and Cellular Biology, February 2001, p. 1089-1097, Vol. 21, No. 4
0270-7306/01/$04.00+0 DOI: 10.1128/MCB.21.4.1089-1097.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
The Yeast Mitochondrial Carrier Leu5p and Its Human Homologue
Graves' Disease Protein Are Required for Accumulation of Coenzyme
A in the Matrix
Corinna
Prohl,1
Winfried
Pelzer,1
Kerstin
Diekert,1
Hanna
Kmita,1,2
Tibor
Bedekovics,3
Gyula
Kispal,1,3 and
Roland
Lill1,*
Institut für Zytobiologie und Zytopathologie der
Philipps-Universität Marburg, 35033 Marburg,
Germany1; Institute of Molecular
Biology & Biotechnology, Poznan University, 61-701 Poznan,
Poland2; and Institute of
Biochemistry, University Medical School of Pecs, 7624 Pecs,
Hungary3
Received 4 October 2000/Returned for modification 15 November
2000/Accepted 29 November 2000
 |
ABSTRACT |
The transport of metabolites, coenzymes, and ions across the
mitochondrial inner membrane is still poorly understood. In most cases,
membrane transport is facilitated by the so-called mitochondrial carrier proteins. The yeast Saccharomyces cerevisiae
contains 35 members of the carrier family, but a function has been
identified for only 13 proteins. Here, we investigated the yeast
carrier Leu5p (encoded by the gene YHR002w) and its close
human homologue Graves' disease protein. Leu5p is inserted into the
mitochondrial inner membrane along the specialized import pathway used
by carrier proteins. Deletion of LEU5 (strain
leu5) was
accompanied by a 15-fold reduction of mitochondrial coenzyme A (CoA)
levels but did not affect the cytosolic CoA content. As a consequence,
the activities of several mitochondrial CoA-dependent enzymes were strongly decreased in
leu5 cells. Our in vitro and in vivo analyses assign a function to Leu5p in the accumulation of CoA in mitochondria, presumably by serving as a transporter of CoA or a precursor thereof. Expression of the Graves' disease protein in
leu5 cells can replace the function of Leu5p, demonstrating that the human protein represents the orthologue of yeast Leu5p. The function of the human protein might
not be directly linked to the disease, as antisera derived from
patients with active Graves' disease do not recognize the protein
after expression in yeast, suggesting that it does not represent a
major autoantigen. The two carrier proteins characterized herein are
the first components for which a role in the subcellular distribution
of CoA has been identified.
 |
INTRODUCTION |
Mitochondria perform a variety of
processes, such as oxidative phosphorylation, the citric acid cycle,
the
-oxidation of fatty acids, parts of the urea cycle, and the
biosynthesis of heme and certain amino acids (13, 14, 61).
The metabolic activity of mitochondria requires the rapid and highly
specific exchange of molecules between the cytosol and the
mitochondrial matrix space. To a large extent, this is facilitated by a
family of transport proteins of the inner membrane, the so-called
mitochondrial carrier proteins (for reviews, see references 20,
22, 31, 44, 45, and 67). Members of this family include proteins responsible for the exchange of ADP and ATP (termed AAC or ANT) and for
the transport of, e.g., phosphate, citrate, carnitine, dicarboxylates,
amino acids, flavin adenine dinucleotide (FAD), or protons. The
biogenesis of carriers differs in various aspects from that of most
other mitochondrial proteins (reviewed in references 2, 32, and
60). They lack an N-terminal targeting sequence (presequence)
and they follow a unique import pathway involving the interaction with
specialized import components in the outer membrane (Tom70), the
intermembrane space (Tim8, Tim9, Tim10, Tim12, and Tim13), and the
inner membrane (Tim18, Tim22, and Tim54).
In their transport-competent form, carrier proteins are dimeric
(50). Each monomer is comprised of three homologous
modules containing two transmembrane segments each. Both the N and C
termini of carrier proteins face the intermembrane space. The primary sequences of carrier proteins typically share between 20 and 40% of
amino acid residues, including a characteristic carrier signature motif
in each of the matrix-exposed loops of the three modules. This motif is
required for proper function of the carriers (see, e.g., reference
42) and for their insertion into the inner membrane (52).
The importance of mitochondrial carrier proteins for a living cell has
been most impressively demonstrated by mouse mutants in, e.g., the
ADP/ATP carrier ANT1 or the ornithine transporter ORNT1 (8,
25). Mutant mice exhibit the hallmarks of well-characterized diseases such as mitochondrial myopathies. For the identification of
the function of the individual carrier proteins, the yeast Saccharomyces cerevisiae has proven to be an excellent model
system. In the genome of this yeast, 35 members of the carrier family have been identified based on characteristic features in their primary
structures (20, 44, 45). To date, the substrates of only
13 proteins have been elucidated, including ADP/ATP, phosphate, various
citric acid cycle metabolites, carnitine, amino acids, and FAD.
The S. cerevisiae gene YHR002w encodes a protein
that shares the characteristic features of mitochondrial carrier
proteins such as the carrier signature motif, the tripartite structure, the presence of six transmembrane segments, and the lack of a typical
N-terminal mitochondrial targeting sequence (presequence [44]). Highest sequence homology exists to human
Graves' disease protein (hGP) (35% identical amino acid residues
[69]), its bovine homologue (37% [21]),
and to a protein of Saccharomyces pombe (46%;
accession no. O 13805). The S. cerevisiae gene
YHR002w, in an attempt to isolate the second
-isopropylmalate synthase (IPMS) in addition to the
well-characterized Leu4p (9), has been cloned previously
and termed LEU5 (19). This attempt was based on
the observation that mutants in LEU4 were not leucine auxotrophic. Only double mutants in both LEU4 and
LEU5 required the addition of leucine for growth. However,
analysis of a partial sequence of LEU5 revealed that the
protein might be membrane integrated and not directly involved in the
biosynthesis of leucine (18, 19). The specific function of
Leu5p remained elusive, though. We therefore sought to determine the
subcellular localization of Leu5p and to define its function. Further,
we intended to investigate the functional relationship
between Leu5p and the human homologue hGP. Our biochemical and genetic
results assign a crucial function to both proteins in the accumulation
of coenzyme A (CoA) in the mitochondrial matrix.
 |
MATERIALS AND METHODS |
Yeast strains and growth of yeast.
The following S. cerevisiae strains were used: strain W303-1A or W303-1B
(MATa or MAT
, ade2-1
leu2-3,112 his311 his3-15 trp1-1
ura3-1) was used as the wild type;
leu5 (W303-1A
leu5::HIS3) (this study);
cit2 (W303-1A
cit2::URA3) (this study);
leu5
cit2 (W303-1A
leu5::HIS3 cit2::URA3) (this study);
cor1
(W303-1A cor1::HIS3) (11);
cox6
(W303-1B cox6::URA3) (33);
flx1
(W303-1A flx1::LEU2) (64);
mir1 (W303-1B
mir1::LEU2) (17). Cells were grown on 1%
yeast extract, 2% Bacto Peptone supplemented with
either 2% glucose (YPD), 3% glycerol (YPG), or 2% galactose (YPGal)
unless stated otherwise. For selective growth, yeast cells were
cultivated in 0.7% yeast nitrogen base, a carbon source as
listed above, and 0.5% ammonium sulfate. Leucine (30 mg/liter), adenine, histidine, lysine, tryptophan, and uracil (20 mg/liter each) were added according to the auxotrophic requirements
of the various strains.
Expression of hGP in yeast.
The gene encoding hGP was
isolated from a cDNA library prepared from a Jurkat lymphoma cell line
by PCR. A 1.3-kb DNA fragment was inserted into a yeast expression
vector (pYES2; Invitrogen) under the control of the GAL10
promoter. The resulting plasmid, pYES2/hGP, was used for transformation
into yeast strains. Expression of hGP was induced by inclusion of 0.2%
galactose in the growth medium.
Fluorimetric measurement of
-IPMS activity.
Either intact
or detergent-lysed mitochondria (50 µg each) were used to synthesize
-isopropylmalate (
-IPM) by incubation in 0.5 ml of SoH buffer
(0.6 M sorbitol, 20 mM HEPES-KOH [pH 7.4]) for 15 min at 25°C.
Intact mitochondria were supplemented with 2 mM
-ketoisovalerate and
2 mM pyruvate. Mitochondria lysed in 0.05% Triton X-100 detergent were
centrifuged (10 min at 12,000 × g), and the
supernatant was supplemented with 1 mM acetyl-CoA and 2 mM
-ketoisovalerate. Analysis of
-IPM by conversion to its
umbelliferone derivative and fluorimetric detection was essentially performed as described previously (7). In brief,
concentrated sulfuric acid (50 µl) and 2.5 ml of diethyl ether were
added to the samples, followed by vortexing for 1 min. The ether phase was removed and dried under a stream of air. Concentrated sulfuric acid
(0.2 ml) was added to the dried extract and the solution was left at
room temperature for 15 min. Then 0.12 ml of 1.84 M resorcinol was
added and samples were incubated at 37°C for 15 min. After addition
of 2.5 ml of H2O, 50 µl of this mixture was added to 450 µl of a borate-carbonate buffer (pH 10). The fluorescence was
measured in an M4 QII Zeiss fluorimeter (excitation, 360 nm;
emission, 415 nm). The fluorescence recorded relative to 0.5 µg
of quinine sulfate per ml (in 0.1 N sulfuric acid) was set to 40, and
the fluorescence measured with 0.1 N sulfuric acid was adjusted to zero.
Miscellaneous procedures.
Previously published methods were
used for the manipulation of DNA and for PCR (49),
transformation of yeast cells (23), isolation of plasmids
from yeast (49), isolation of yeast mitochondria and
postmitochondrial supernatants (PMS) (12), protein import into mitochondria (15, 16, 55), whole-cell lysates by
breaking the cells with glass beads (68), enzyme
activities of citrate synthase (54), and determination of
cellular citrate concentrations (41). For the enzymatic
determination of CoA (40), mitochondria and PMS were
deproteinized by the addition of 4% perchloric acid. After 5 min on
ice, 150 mM potassium phosphate (pH 7) was added and the pH was
adjusted to 7 with KOH. Samples were frozen in liquid nitrogen, thawed,
and centrifuged for 10 min at 12,000 × g. The
supernatant was used for detection of CoA.
 |
RESULTS |
Insertion of Leu5p into the mitochondrial inner membrane occurs
along a carrier-specific pathway.
To identify Leu5p as a
constituent of the mitochondrial inner membrane, we studied its import
and localization in mitochondria. Leu5p was synthesized by in vitro
translation in the presence of radioactive
[35S]methionine. The radiolabeled protein was incubated
with isolated yeast mitochondria in the presence of a membrane
potential and ATP, and then samples were treated with proteinase K. A
substantial fraction of Leu5p became resistant to digestion by
proteinase K, indicating its uptake by the organelles (Fig.
1A). Consistent with the lack of a
mitochondrial presequence, no proteolytic processing was observed.
After lysis of the mitochondria with detergent, Leu5p was completely
digested, indicating that the protease resistance was not caused by
aggregation of Leu5p. Import of Leu5p was largely diminished after
removing the surface receptors by treatment of the mitochondria with
trypsin before the import reaction (data not shown). Depletion of the
membrane potential, 
, by addition of the uncoupler carbonyl
cyanide m-chlorophenylhydrazone (CCCP) inhibited import
strongly (Fig. 1B). Inhibition of import occurred in a fashion similar
to that observed for import of a model precursor protein (pSu9-DHFR)
into the matrix.

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FIG. 1.
Leu5p is imported into the mitochondrial inner membrane.
(A) [35S]methionine-labeled Leu5p and the precursor of
-MPP were incubated with isolated wild-type mitochondria (50 µg/sample) in import buffer containing 1 mM ATP and 2 mM NADH for 10 min at 25°C (55). Samples were chilled on ice, and
mitochondria were reisolated and resuspended in SoH buffer (0.6 M
sorbitol, 20 mM HEPES-KOH [pH 7.4]). Proteinase K (PK) was added at
the indicated concentrations in the presence or absence of 0.1% Triton
X-100. After 15 min protease digestion was halted by the addition of 1 mM phenylmethylsulfonyl fluoride, and proteins were precipitated with
trichloroacetic acid and separated by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis. The radiolabeled proteins
were visualized by fluorography. (B) Import of Leu5p requires
a membrane potential. Mitochondria in import buffer were treated with
the indicated concentrations of CCCP for 3 min at 25°C.
[35S]methionine-labeled Leu5p and the precursor of
pSu9-DHFR were added and samples were incubated for 20 min at
25°C. After treatment with 50 µg of proteinase K per ml, samples
were analyzed as described for panel A. (C) Leu5p is protease sensitive
after the opening of the outer membrane and requires Tim22p for import.
Import of radioactive Leu5p and -MPP precursors was performed as for
panel A using mitochondria isolated from wild-type and
tim22 mutant strains Tim22 (Gal10) (51).
The mitochondria were reisolated and subjected to a swelling procedure
(15) in the presence or absence of 50 µg of proteinase K
(PK) per ml. Protease digestion was halted by the addition of 1 mM
phenylmethylsulfonyl fluoride. Proteins were precipitated with
trichloroacetic acid and analyzed by sodium dodecyl
sulfate-polyacrylamide gel electrophoresis and fluorography.
Radioactive proteins were quantitated by phosphorimager analysis.
Abbreviations: p, i, and m, precursor, intermediate, and mature forms
of imported proteins; St., standard containing 50% of input precursor
protein.
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To analyze the submitochondrial localization of imported Leu5p,
wild-type mitochondria were subjected to hypotonic swelling
after the
import reaction, a procedure causing the rupture of
the outer, but not
the inner, membrane (
15,
24). The majority
of imported
Leu5p (>85%) became accessible to protease after the
opening of the
outer membrane, suggesting that Leu5p was exposed
to the intermembrane
space (Fig.
1C, right). The imported protein
was resistant to
extraction by treatment with alkaline buffers,
indicating integration
into the membrane (not shown). Together,
these data suggest that Leu5p
was imported into the mitochondrial
inner membrane in a


-dependent
fashion.
We next tested whether Leu5p follows the import pathway of
mitochondrial carrier proteins by employing a yeast mutant in which
Tim22p can be depleted by regulated gene expression. Import of
Leu5p
into Tim22p-depleted mitochondria (
51) was reduced by
70%
compared to wild-type organelles (Fig.
1C). In contrast, import
of the

-subunit of matrix processing peptidase (

-MPP) occurred
at
wild-type efficiency. This protein uses the Tim17p/Tim23p complex
for
its import into the matrix. In summary, Leu5p requires Tim22p
for its
import into the mitochondrial inner membrane and thus
appears to follow
the carrier-specific protein import
pathway.
Phenotypical consequences of the deletion of LEU5.
To initiate the functional investigation of Leu5p, the entire coding
region of LEU5 was deleted using a single-step gene
disruption procedure (1). The deletion of LEU5
was verified by PCR (data not shown). In comparison to wild-type cells,
mutant cells lacking LEU5 (strain
leu5) showed similar
growth on rich media containing glucose (data not shown) but displayed
strongly retarded growth on rich media containing glycerol (Fig.
2A, left part of left plate). On minimal
media,
leu5 cells did not exhibit an auxotrophy for leucine
(19 and data not shown). Thus,
leu5 cells display a
leaky pet phenotype (63), suggesting that Leu5p
performs a crucial but not essential function within mitochondria.

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FIG. 2.
Leu5p-deficient cells are functional in oxidative
phosphorylation. (A) Wild-type and leu5 cells were grown on YPG agar
plates for 4 days at 30°C. The plate on the right contained an
additional 0.2% galactose. Where indicated cells harbored the plasmid
pYES2/hGP containing the cDNA of hGP. (B) Cytochrome spectra were
recorded using isolated mitochondria from wild-type (WT) and leu5
cells which were grown overnight in YPD medium (30, 62).
The bar represents an absorption difference of 0.01 (O.D.). (C)
Membrane potential-driven formation of ATP. Mitochondria (10 µg)
isolated from the indicated strains were incubated in buffer P (20 mM
morpholinepropanesulfonic acid [MOPS]-KOH [pH 7.2], 0.25 M sucrose,
0.3 mM potassium phosphate, 5 mM MgCl2, 1 mg of fatty
acid-free bovine serum albumin per ml, and 1 mM ADP) at 25°C. A
membrane potential was generated by the addition of 2 mM NADH. The
formation of ATP is accompanied by the decrease in free inorganic
phosphate, which was measured by the malachite green assay (37,
43). One of the samples contained 50 nM carboxyatractyloside
(CAT) to block the exchange of ADP and ATP between mitochondria and
cytosol.
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The reduced growth of

leu5 cells was not caused by a defect in
respiration. No significant differences in the cytochrome
spectra of

leu5 mitochondria were observed compared to wild-type
organelles (Fig.
2B). In addition,

leu5 mitochondria were
active
in oxidative phosphorylation as measured by the NADH-dependent
incorporation of inorganic phosphate into ADP catalyzed by
mitochondrial
F
1F
0-ATP synthase (Fig.
2C)
(
43). The slight reduction in the
rate of ATP
production compared to wild-type cells cannot account
for the
severe impairment of growth on nonfermentable carbon sources.
Organelles isolated from yeast strains defective in the phosphate
carrier (

mir1) or in complex III (

cor1) were inactive in
this
assay. Furthermore, no incorporation of phosphate into ADP was
observed when the ADP/ATP carrier was blocked by the addition
of
carboxyatractyloside (Fig.
2C) or when NADH was omitted (data
not
shown). These data suggest that the retarded growth of

leu5
cells
observed under nonfermentative conditions is due to the
impairment of a
process other than oxidative phosphorylation.
Presumably, Leu5p, as a
member of the carrier family, mediates
the transport of a substrate
required for proper function of an
intramitochondrial biosynthetic
process.
Leu5p is required for accumulation of CoA inside mitochondria.
To identify the substrate of Leu5p, we took advantage of the
phenotypical observations made for the inactivation of the
LEU4 (coding for an IPMS) and LEU5 genes. The
combined, but not the single, mutation of the two genes was reported to
result in an auxotrophy for leucine (9, 19). In
leu4 mutant cells, Chang and coworkers found 25% residual
activity of IPMS (9), suggesting the existence of a
second enzyme with IPMS activity. Initially, Leu5p was suspected
to represent the second IPMS enzyme. However, to date this
activity is attributed to a protein termed Leu9p (encoded by the gene
YOR108w), which exhibits high sequence similarity to Leu4p
(W. Pelzer, unpublished data). Leu9p is located in the mitochondrial
matrix, in contrast to Leu4p, which residues in both mitochondria and
the cytosol (see Fig. 3A) (3). Thus, in
leu4 mutant
cells,
-IPM is synthesized exclusively in mitochondria.
What might then lead to the leucine auxotrophy upon inactivation of
LEU5 in a
leu4 mutant background? We reasoned
that Leu5p,
as a mitochondrial carrier, may transport a compound
related to
the reaction catalyzed by mitochondrial IPMS (Fig.
3A). Potential
candidates include

-ketoisovalerate, CoA as the precursor of
the
substrate acetyl-CoA, Zn
2+ as a cofactor of Leu4p/Leu9p, or

-IPM as the product of the
IPMS reaction (
34).

-Ketoisovalerate is unlikely to be the
substrate of Leu5p, since
this metabolite is synthesized within
the mitochondria (Fig.
3A) and

leu5 cells show no auxotrophy
for valine (data not shown).

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FIG. 3.
Intact leu5 mitochondria are defective in the
synthesis of -IPM. (A) The final steps of leucine biosynthesis in
yeast. The locations of the various enzymes are indicated. Pyr,
pyruvate; -KIV, -ketoisovalerate; -IPM,
-isopropylmalate; -KIC, -ketoisocaproate. mtLeu4p and cytLeu4p
are the mitochondrial and cytosolic forms of Leu4p, respectively.
(B) Mitochondria were isolated from wild-type and leu5 cells grown
in YPGal medium. They were incubated in SoH buffer for 15 min at 0 or
25°C with 2 mM -ketoisovalerate (KIV) and 2 mM pyruvate unless
indicated otherwise. One sample also contained 20 µM CCCP to deplete
the membrane potential. -IPM formed was converted to its
umbelliferone derivative, which then was determined by fluorimetry.
a.u., arbitrary units. In the insert, an immunostaining analysis of
mitochondria isolated from wild-type and leu5 cells is shown using an antibody raised against
purified IPMS (27). Loading of an equivalent amount of
protein in both lanes was confirmed by staining with Ponceau S dye
before immunodecoration. (C) Mitochondria isolated from the indicated
strains were incubated with 2 mM -ketoisovalerate and 2 mM pyruvate
at 25°C as described for panel B and -IPM was determined. The bars
show the standard error of three independent experiments.
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We first investigated the IPMS reaction in intact isolated mitochondria
using a fluorimetric assay which detects the fluorescent
umbelliferone
derivative of the product

-IPM. Wild-type mitochondria
gave
rise to the time- and temperature-dependent formation of

-IPM
(Fig.
3B, left). Synthesis was fully dependent upon the
addition of
both

-ketoisovalerate and pyruvate (Fig.
3B, right).
The latter is
converted by pyruvate dehydrogenase to acetyl-CoA,
which is unable to
pass across the mitochondrial inner membrane
(
26).
Generation of

-IPM was inhibited by the addition of the
uncoupler
CCCP, which presumably interferes with the potential-dependent
uptake
of

-ketoisovalerate and/or pyruvate into mitochondria.
Thus, our
assay system faithfully measured the synthesis of

-IPM
in intact
wild-type mitochondria. In contrast, organelles isolated
from

leu5
cells did not synthesize

-IPM (Fig.
3B, middle). This
was
surprising, as these mitochondria contained two- to threefold
higher
levels of IPMS protein as determined by immunostaining
(Fig.
3B,
insert). Pyruvate dehydrogenase was present at wild-type
activities in
detergent-lysed mitochondria of

leu5 cells (data
not shown). The
defect in the synthesis of

-IPM was specific
for

leu5 cells, as
wild-type levels of

-IPM were generated by
mitochondria purified
from cells defective in the phosphate carrier
(

mir1) and the FAD
carrier (

flx1) and cells defective in either
complex III (

cor1)
or complex IV (

cox6) (Fig.
3C). In conclusion,
the IPMS enzyme
present in intact

leu5 mitochondria is incapable
of synthesizing

-IPM.
An entirely different result for the IPMS enzyme activity was obtained
after detergent lysis of

leu5 mitochondria. An almost
twofold
increase compared to wild-type organelles was detected
(Fig.
4). Similar data were obtained using the
CoA release assay
previously used to measure the IPMS activity in
cellular extracts
(
34 and data not shown). The formation
of

-IPM was time and
temperature dependent and required the addition
of the substrates
of IPMS,

-ketoisovalerate, and acetyl-CoA (Fig.
4
and data not
shown). Addition of Zn
2+ ions was not required
to stimulate

-IPM synthesis, excluding
the possibility that a lack
of Zn
2+ in the mitochondrial matrix was the reason for the
defective
IPMS reaction in intact

leu5 mitochondria. In support of
this
conclusion, the Zn
2+-dependent mitochondrial alcohol
dehydrogenase exhibited wild-type
activity in

leu5 organelles (data
not shown). In summary,

leu5
mitochondria contain active IPMS.
However, the enzyme activity
is only detectable after the opening of
the inner membrane.

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FIG. 4.
Detergent extracts of leu5 mitochondria contain
wild-type levels of -IPMS activity. Mitochondria were isolated from
wild-type and leu5 cells grown in YPGal medium. They were lysed in
SoH buffer containing 0.05% Triton X-100 and centrifuged for 10 min at
12,000 × g. The clarified extract was incubated
for 0 or 15 min with 2 mM -ketoisovalerate (KIV) and 1 mM
acetyl-CoA as indicated. -IPM was determined as described for Fig.
3B. a.u., arbitrary units.
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The results presented above excluded

-ketoisovalerate,
Zn
2+, and

-IPM as potential substrates of Leu5p. This
rendered it likely
that the defect in IPMS activity in intact

leu5
mitochondria
was due to a deficiency of CoA in the matrix. We therefore
measured
the content of CoA present in isolated mitochondria or in PMS
of various yeast cells. In mitochondria and PMS of wild-type cells,
we
found 3.2 and 0.7 nmol CoA/mg of protein, respectively (Fig.
5). Using an estimated protein
concentration of 300 mg/ml for
both mitochondria and the cytoplasm,
these numbers correspond
to 0.96 and 0.21 mM CoA, respectively. Similar
ratios were reported
previously (
46). Strikingly,
mitochondria from

leu5 cells contained
about 15-fold lower levels of
CoA compared to wild-type organelles,
whereas a slight increase was
found for PMS. No major variations
in the CoA levels relative to
wild-type controls were detected
for either mitochondria or PMS derived
from cells defective in
the phosphate carrier (

mir1), the FAD
carrier (

flx1), or the
pet cells

cor1 and

cox6
(Fig.
5). Thus, Leu5p appears to be
specifically required for the
accumulation of CoA in the mitochondrial
matrix.

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FIG. 5.
Mitochondria isolated from leu5 cells contain
strongly decreased levels of CoA. Mitochondria and PMS were prepared
from the indicated yeast strains. The amount of CoA and its
acylated derivatives was measured by a three-step enzyme
assay (40). The bars show the standard error of three
independent experiments. WT, wild-type strain.
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LEU5 genetically interacts with CIT2
encoding the peroxisomal citrate synthase.
We further sought to
obtain in vivo evidence for a deficiency of mitochondrial CoA in
leu5 cells. First, we expected a low activity of mitochondrial
citrate synthase (Cit1p) in these cells. Mitochondria lacking Cit1p
activity can satisfy their needs for citrate by importing it from the
cytosolic pool of citrate that is produced by the peroxisomal citrate
synthase (Cit2p) (35). A
cit1
cit2 double mutant, on
the other hand, does not grow on nonfermentable carbon sources due to
low citrate levels, and the cells exhibit an auxotrophy for glutamate,
a classical phenotype of citrate synthase deficiency (29).
Therefore, deletion of the CIT2 gene in the
leu5
background was anticipated to evoke a phenotype similar to that
observed for
cit1
cit2 cells. Deletion of CIT2 alone is
not associated with any phenotypical consequences (29,
66). Indeed,
leu5
cit2 cells contained fivefold lower levels of citrate compared to wild-type cells or mutant cells with
single deletions of either LEU5 or CIT2 genes
(Fig. 6). Further, the double mutant
cells did not grow on rich media containing glycerol, i.e., they
displayed a strict pet phenotype, unlike
leu5 cells (data
not shown). Finally,
leu5
cit2 cells showed a striking deficiency
in cytochromes (Fig. 2B) and an auxotrophy for glutamate (not shown).

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FIG. 6.
Low citrate levels in a cell lacking both
mitochondrial Leu5p and peroxisomal Cit2p. Cell extracts were
prepared from the indicated yeast cells and the content of citrate was
measured. The bars show the standard error of three independent
experiments. WT, wild-type strain.
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All of these phenotypical observations made for

leu5

cit2 cells
conform well to the idea that Leu5p facilitates the accumulation
of CoA
in the mitochondrial matrix. The deficiency of mitochondrial
CoA in
addition to the lack of peroxisomal Cit2p results in a
reduced cellular
content of citrate (Fig.
6). As a consequence,
synthesis of

-ketoglutarate (by the citric acid cycle) and its
transamination
product, glutamate, the precursor of C5 amino acids,
is decreased.
Further, production of succinyl-CoA, a substrate
of the first step of
heme biosynthesis, is hampered, explaining
the defect in cytochromes in

leu5

cit2 cells. Hence, the surprising
connection between
mitochondrial Leu5p and peroxisomal Cit2p provides
in vivo evidence for
Leu5p performing a function in the accumulation
of CoA in
mitochondria.
The hGP functionally complements the defect of Leu5p.
The
significant homology between hGP and yeast Leu5p suggests a similar
function of the two proteins. To test this idea,
leu5 cells were
transformed with a plasmid carrying the hGP gene under the control of a
galactose-inducible promoter. The resulting
leu5/hGP cells were
analyzed for growth on nonfermentable carbon sources. When expression
of hGP was induced by the addition of galactose,
leu5/hGP cells grew
at wild-type rates (Fig. 2A, right plate).
leu5 cells grew much
slower under these conditions, suggesting that hGP could replace the
function of Leu5p. In keeping with this interpretation, hardly any
differences to wild-type cells were obtained for the activity of IPMS
enzymes in intact mitochondria (Fig. 7A).
Further, the levels of mitochondrial CoA were almost fully restored in
leu5/hGP cells (sixfold increase compared to
leu5 cells) (Fig.
7B). Finally, expression of hGP in
leu5
cit2 cells partially
restored the cellular citrate concentration to the levels of wild-type
cells (Fig. 7C). Partial replacement of the function of yeast proteins
has been observed for a number of other mammalian carriers. Our data
demonstrate that the human protein can at least partially replace Leu5p
function and suggest a role of hGP in the accumulation of CoA in
mitochondria.

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|
FIG. 7.
hGP can functionally replace yeast Leu5p. The formation
of -IPM (A), the total content of CoA in mitochondria (B), and the
cellular amount of citrate (C) in wild-type (WT) and leu5 cit2
mutant cells with and without expressed hGP was measured as described
for Fig. 3B, 5, and 6. The bars show the standard error of at least
three independent experiments.
|
|
 |
DISCUSSION |
In this study, we used biochemical and genetic approaches to
identify a function of the mitochondrial carriers Leu5p and hGP in the
accumulation of CoA in the matrix. First, the CoA levels in
leu5
mitochondria were 15-fold lower than those in wild-type or various
mutant organelles. No corresponding decrease in the CoA concentration
was detectable in the PMS of
leu5 cells (see below). Second, the
CoA-dependent enzyme IPMS was largely defective in intact
leu5
mitochondria. This was solely due to a shortage in the substrate
acetyl-CoA, since the enzyme was fully active when detergent extracts
of
leu5 mitochondria were supplied with acetyl-CoA. Third, the
surprising interference between mitochondrial Leu5p and peroxisomal
citrate synthase Cit2p is best explained on the basis of a role of
Leu5p in CoA accumulation in the mitochondrial matrix. The decreased
CoA levels in
leu5 mitochondria lead to impaired synthesis of
citrate by mitochondrial Cit1p. In
leu5
cit2 cells, citrate can no
longer be supplied to mitochondria by peroxisomal Cit2p-catalyzed
synthesis. This results in a mutant cell that closely mimics the double
deletion of the CIT1 and CIT2 genes in that
the cellular citrate concentration is largely decreased. As a further
consequence, the flux through the citric acid cycle in
leu5
cit2 cells is low, and cells are impaired in generating glutamate from
-ketoglutarate. This defect may be further enhanced by the low activity of the other CoA-dependent enzymes of the citric
acid cycle. In passing, our data nicely support the functional communication between mitochondria and peroxisomes by retrograde regulation (see, e.g., references 10 and 36). A final
point supporting the role of Leu5p in mitochondrial CoA accumulation is
the dramatic defect in heme-containing proteins in
leu5
cit2 cells. The heme deficiency is a result of the lowered activity of
-aminolevulinate synthase, the first enzyme of heme biosynthesis using succinyl-CoA as a substrate. The impairment of heme biosynthesis in
leu5
cit2 cells may be the major reason why these cells do not
grow on the nonfermentable carbon source glycerol.
One may wonder why
leu5 cells, as opposed to
leu5
cit2 cells,
are not auxotrophic for glutamate or defective in heme-containing proteins. First, the Km values for acetyl-CoA
are 10-fold higher for IPMS than for citrate synthase, rendering IPMS
most sensitive to reduced CoA concentrations (38, 48). A
second obvious reason may be the relatively high amounts of leucine
required for cellular protein biosynthesis.
To our knowledge, Leu5p and hGP are the first proteins for which a
function in the cellular distribution of CoA has been demonstrated. The
cellular compartmentation of CoA is an important but still poorly
understood aspect of metabolism (47). In wild-type cells, the highest CoA concentrations are found in mitochondria and the peroxisomes (46, 65), where the coenzyme participates in
numerous pathways, such as the citric acid cycle, the biosynthesis of
heme, the
-oxidation of fatty acids, and the glyoxylate cycle. About 5- to 10-fold lower levels of CoA as compared to mitochondria are found
in the cytosol of wild-type cells (Fig. 5) (46).
Strikingly, in a mutant lacking Leu5p the relative concentrations of
CoA in mitochondria and the cytosol were reversed. These data suggest that either CoA or a precursor of CoA is the substrate of the Leu5p
carrier protein. A decision between these possibilities cannot be made
presently, since little is known about the compartmentation and the
molecular identity of the five enzymes participating in CoA
biosynthesis. Only for the first enzymatic step has the gene been
identified. Pantothenate kinase (gene YDR531w in S. cerevisiae [6]) catalyzes the committed step of
biosynthesis and is tightly regulated in its activity by acetyl-CoA
(47). While pantothenate kinase is known to reside in the
cytosol, the location of the enzymes completing biosynthesis of CoA has
not been determined with certainty. Dephospho-CoA kinase mediating the
final reaction of CoA biosynthesis has been reported to be associated
with mitochondria but is believed to be located outside the inner
membrane (53, 58). These findings render it likely that
CoA is synthesized externally to the mitochondrial inner membrane and
must be transported into the matrix space. In support of this view, an
in vitro transport system for CoA uptake into isolated mitochondria of
rat liver has been reported (59). Mitochondrial import of
CoA required an electrical gradient (56), but the
transporter has not been identified (57). Using isolated
yeast mitochondria, we were unable to apply these findings for setting
up a transport assay for CoA. This was mainly due to the fact that
radiolabeled CoA was rapidly metabolized when added to isolated yeast
mitochondria, presumably by cleavage of CoA to 4-phosphopantetheine, a
reaction catalyzed by CoA hydrolase (5). The data
presented here fit nicely with the cytosolic synthesis of CoA, as
leu5 cells were capable of producing normal levels of cytosolic
CoA. On that basis, the most likely substrate of Leu5p is CoA. Clearly,
definitive identification of the substrate of Leu5p will have to await
the purification of Leu5p and the reconstitution of the transport reaction, as has been recently achieved for several mitochondrial carrier proteins (28, 45).
Mitochondria isolated from
leu5 cells contain low yet significant
amounts of CoA. Thus, an alternative pathway must exist to supply the
organelles with CoA. Most likely, another member of the mitochondrial
carrier family takes over the function of Leu5p in accumulating CoA in
the mitochondrial matrix, even though it does so at low efficiency. The
best candidates for such a supplementary task are the three ADP/ATP
carrier proteins (AAC) of yeast. In support of this suggestion, Leu5p
shares highest sequence similarity to the AAC subgroup of the yeast
carriers (44, 45). Further, based on their substrate
specificity, AAC proteins seem to be optimally suited for the transport
of the adenine nucleotide CoA across the mitochondrial inner membrane.
Our study answers the long-standing question of the connection between
the IPMS Leu4p and the membrane protein Leu5p (9, 18, 19).
Only
leu4
leu5 double mutant cells, but not the single mutants,
exhibit an auxotrophy for leucine. Now, this finding can be easily
understood on the basis of the low content of mitochondrial CoA upon
deletion of LEU5. In the absence of Leu4p,
-IPM is
synthesized by Leu9p (Fig. 3A), an isoenzyme of Leu4p that exhibits
83% amino acid identity and is localized to the mitochondrial matrix
(W. Pelzer, unpublished). Since Leu4p is located in both the matrix and
the cytosol (3), in cells lacking LEU5,
-IPM
can be generated by cytosolic Leu4p. In the
leu4
leu5 double
mutant, however, synthesis of
-IPM can only be mediated by
mitochondrial Leu9p, which functions poorly due to the low CoA concentration.
Graves' disease is a multifactorial autoimmune disorder in which
hyperthyroidism is caused by the production of autoantibodies against
the thyrotropin receptor and other thyroid proteins (reviewed in
references 4 and 39). A cDNA for hGP has been identified by expression cloning in an immunoscreen using antisera from patients with active Graves' disease (69). The similarity of hGP
to mitochondrial carrier proteins has been noted earlier, but a
function has not been assigned yet. As shown here, hGP can replace the
yeast carrier Leu5p, demonstrating that both proteins are functional
orthologues required for the accumulation of CoA in the mitochondrial
matrix. We were unable to detect hGP after functional expression in
yeast by immunostaining with antisera derived from several patients with hyperthyroidism (data not shown). These findings indicate that hGP
is not a major autoantigen of Graves' disease. Further, our insights
into the function of hGP in CoA transport suggest no direct involvement
of the mitochondrial carrier in this disorder.
The identification of the function of Leu5p and hGP in the accumulation
of CoA in the mitochondrial matrix is a seminal step in the
understanding of the mechanisms underlying proper subcellular distribution of CoA. For a comprehensive knowledge of CoA metabolism our studies will have to be followed up by a search for components involved in the biosynthesis of CoA. Moreover, membrane transporters facilitating supply of, e.g, peroxisomes, with this important cofactor
will have to be identified.
 |
ACKNOWLEDGMENTS |
The expert technical assistance of B. Niggemeyer, M. Dienst, and
M. Weidgans is gratefully acknowledged. We are indebted to G. Kohlhaw
for his invaluable advice throughout this study. We thank G. Kohlhaw,
W. Neupert, N. Pfanner, P. A. Srere, and A. Tzagoloff for
kindly providing yeast strains and antisera, M. Grussendorf for
antisera of patients with Graves' disease, and M. Brunner and
coworkers for providing mitochondria depleted in Tim22p.
Our work was supported by grants of the Sonderforschungsbereich 286 of
the Deutsche Forschungsgemeinschaft, the Volkswagen-Stiftung, the Fonds
der Chemischen Industrie, and the Hungarian Funds OKTA. H.K.
acknowledges a fellowship from Deutscher Akademischer
Auslandsdienst DAAD.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Institut
für Zytobiologie und Zytopathologie der
Philipps-Universität Marburg, Robert-Koch-Str. 5, 35033 Marburg,
Germany. Phone: 49-6421-286 6449. Fax: 49-6421-286 6414. E-mail:
Lill{at}mailer.uni-marburg.de.
We wish to dedicate this publication to the memory of the late Paul
A. Srere.
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Molecular and Cellular Biology, February 2001, p. 1089-1097, Vol. 21, No. 4
0270-7306/01/$04.00+0 DOI: 10.1128/MCB.21.4.1089-1097.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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