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Molecular and Cellular Biology, June 2002, p. 4334-4345, Vol. 22, No. 12
0270-7306/02/$04.00+0 DOI: 10.1128/MCB.22.12.4334-4345.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Pharmacology, University of Iowa College of Medicine, Iowa City, Iowa 52242
Received 24 May 2001/ Returned for modification 30 July 2001/ Accepted 12 March 2002
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subunits of the Gi and Gq family and accelerate their intrinsic GTPase activity provided the first insight into how RGS proteins regulate G protein signaling. Although RGS proteins possess the potential to interact with heterotrimeric G proteins, recent evidence suggests that several RGS proteins localize predominantly in the nucleus (3, 5, 6, 8, 11, 18, 29), where G proteins are not thought to localize. These findings raise the fascinating possibility that some members of the RGS protein family may have functions apart from regulatory control of heterotrimeric G protein signaling. Recently, we reported that RGS12, a member of the RGS protein family, exists in multiple splice variant forms and that these splice variant forms of RGS12 localize exclusively in the nucleus (6). One of these RGS12 splice variants, RGS12TS-S, evoked particular interest due to its unique pattern of subnuclear organization as discrete dots or foci, quite reminiscent of localization of those proteins involved in specialized functions within the nucleus. The underlying molecular mechanism of nuclear import and subnuclear targeting of RGS12TS-S is unknown. The subnuclear targeting of RGS12TS-S raises intriguing questions regarding the significance of such localization in relation to the function(s) of nuclear RGS proteins. In the present study, we addressed the structural basis for subnuclear targeting of RGS12TS-S, the topological characteristics of RGS12TS-S subnuclear sites in relation to previously identified subnuclear structures, and the functional involvement of this RGS protein in the cell nucleus.
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-fibrillarin (ANA-N) were from Sigma-Aldrich. Polyclonal antibody to green fluorescent protein (GFP) was from Invitrogen, an antibody to Sm proteins was from NeoMarkers, an antibody to bromouridine-bromodeoxyuridine was from Roche, and a Cy5-conjugated secondary antibody was from Jackson ImmunoResearch. Joseph Gall (Carnegie Institute, Baltimore, Md.) generously provided an antibody to p80 coilin (2). Cell culture media and serum were provided by the Diabetes Endocrinology Research Center (the University of Iowa). Oligonucleotide primers and other molecular biological reagents were obtained from the University of Iowa DNA Core. Preparation of deletion constructs of RGS12TS. Recently, we described isolation and cloning of the RGS12TS-S cDNA and subcloning of this cDNA into an enhanced GFP (EGFP) vector with the GFP sequence in frame at the C terminus of RGS12TS-S (6). Similarly, we cloned the RGS12TS-S cDNA into pcDNA3.1 myc/His vector with the c-myc/His sequence in frame with the C terminus of RGS12TS-S. cDNAs encoding RGS12TS-S deletion constructs were generated by PCR using forward primers that deleted indicated amino acids and included a Kozak consensus sequence and ATG start codon for proper translation of the proteins. Reverse primers were selected to amplify RGS12TS-S cDNAs encoding RGS12TS-S proteins lacking various C-terminal sequences. Both forward and reverse primers were engineered with restriction sites for cloning into pEGFP or pcDNA3.1 myc/His to create RGS12TS-S deletion constructs with C-terminal GFP or c-myc sequences, respectively. Double-stranded sequencing of all RGS12TS-S cDNAs was performed by automated fluorescent dideoxynucleotide sequencing by the University of Iowa DNA Core Facility.
Cell culture and transfection. COS-7, HEK293T, NIH 3T3, and U-2 OS cells were grown in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum and gentamicin (50 µg/ml) in a 5% CO2 humidified atmosphere at 37°C. MCF7, MDA-MB-231, MDA-MB-468, Saos-2, C-33 A, and SW-13 cells were grown in American Type Culture Collection-recommended media. Cells were transfected with plasmid DNA by electroporation or by Lipofectamine Plus reagent (GIBCO) and plated for confocal microscopy or immunoblotting studies as we have previously described (6).
Immunofluorescence. Cells expressing various RGS12TS-S-GFP constructs were fixed, permeabilized, stained with propidium iodide, and subjected to confocal microscopic visualization as previously described (6). For indirect immunofluorescence, fixed and permeabilized cells were incubated with primary antibodies and fluorescein isothiocyanate- or Cy5-conjugated secondary antibodies also as previously documented (6). Confocal microscopy was performed with a Bio-Rad MRC 1024 confocal microscope equipped with a krypton-argon laser at the University of Iowa Central Microscopy Research Facility. EGFP fluorescence was examined via a fluorescein isothiocyanate filter, propidium iodide fluorescence was examined with a Texas Red filter, and Cy5 fluorescence was examined with a Cy5 filter and 60x oil lenses. Images were captured after Kalman averaging, and pseudocolor processing was performed by use of the Confocal Assistance program. Images shown are representative of a minimum of 500 cells derived from three or more separate transfections. In some experiments, fixed cells were stained with 4,6-diamidino-2-phenylindole (DAPI) and examined with a Zeiss fluorescence microscope.
Nuclear matrix preparation and immunoblotting. Subcellular fractionation of COS-7 cells expressing myc- and GFP-tagged RGS12TS protein constructs was performed as we have previously described (6). Resulting nuclear pellets were used to prepare the nuclear matrix fraction by a published procedure (24). In brief, nuclei were treated at room temperature for 10 min with buffer A {10 mM PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] (pH 6.8), 100 mM NaCl, 300 mM sucrose, 3 mM MgCl2, 1 mM EGTA, 1 mM 4-(2-amino-ethyl)benzenesulfonyl fluoride, 1 µM leupeptin, 1 µM aprotinin, 1 µM pepstatin, 1 µM bestatin, 1 µM E64, 10 U of RNasin/ml} containing 0.5% Triton X-100. Nuclei were then sedimented by centrifugation at 1,500 x g for 10 min at 4°C, and the resulting pellet was resuspended in buffer A containing 600 U each of the restriction enzymes PstI and HaeIII/ml. Nuclei were incubated for 1 h at 37°C followed by addition of ammonium sulfate to a final 0.25 M concentration. This mixture was centrifuged at 1,500 x g for 10 min at 4°C, and the resulting pellet was resuspended in buffer A and an equal volume of 4 M NaCl. The resulting suspension was incubated at room temperature for 5 min prior to centrifugation at 1,500 x g for 10 min at 4°C. The resulting pellet represented the nuclear matrix fraction. Immunoblotting was performed essentially as we have previously reported (6).
In situ nuclear matrix preparations. In situ nuclear matrix was prepared essentially as previously described (24). Briefly, COS-7 cells growing in two-chambered glass slides were washed twice with cold Dulbecco's phosphate-buffered saline and incubated with buffer A containing 0.5% Triton X-100 for 2 to 5 min at 4°C. Cells were then incubated sequentially with buffer A containing 600 U each of PstI and HaeIII/ml for 1 h at 37°C, buffer A containing 0.25 M ammonium sulfate, and buffer A containing 2 M NaCl. Cells were then fixed with 4% paraformaldehyde in buffer A for 30 min at room temperature. No detectable staining of nuclei with DAPI was observed in these cells, demonstrating the effective removal of DNA from cells by this procedure. Thus, cell nuclei were visualized by indirect immunofluorescence of lamin A/C.
In situ labeling of DNA replication sites. COS-7 cells expressing RGS12TS-S-GFP were washed twice with Dulbecco's phosphate-buffered saline followed by incubation in growth medium containing 10 µM bromodeoxyuridine for 45 min or 24 h at 37°C. Cells were fixed by sequential treatment with 70% ethanol and 4 N HCl, and bromodeoxyuridine incorporation into DNA was visualized by indirect immunofluorescence. RGS12TS-S was visualized by indirect immunofluorescence with an antibody that we developed to the N terminus of RGS12TS (6), because the fixation procedure used to identify bromodeoxyuridine-labeled DNA interferes with fluorescence from GFP.
For visualization of DNA synthesis in various human tumor cell lines transfected with RGS12TS-S-GFP, 10 µM bromodeoxyuridine was added to the medium 24 or 48 h following transfection for a period of 20 h. Cells were fixed with paraformaldehyde, permeabilized with 0.3% Triton X-100, and treated with DNase I (100 µg/ml) before detection of bromodeoxyuridine-labeled DNA by indirect immunofluorescence, with RGS12TS-S-GFP being identified directly by GFP fluorescence.
In situ run-on transcription. Labeling of nascent RNA transcripts in situ was performed by a previously published method (26). Briefly, COS-7 cells expressing various RGS12TS-S-GFP constructs were rinsed sequentially with ice-cold TBS (10 mM Tris-HCl [pH 7.5], 150 mM NaCl, 5 mM MgCl2) and ice-cold glycerol buffer [20 mM Tris-HCl (pH 7.5), 25% glycerol, 5 mM MgCl2, 0.5 mM EGTA, 1 mM 4-(2-amino-ethyl)benzenesulfonyl fluoride]. Washed cells were incubated briefly with ice-cold glycerol buffer containing Triton X-100 (0.03%) and RNasin (100 U/ml) followed by incubation at room temperature for 25 to 30 min in nucleic acid synthesis buffer [50 mM Tris-HCl (pH 7.5); 10 mM MgCl2; 150 mM NaCl; 25% glycerol; 1 mM 4-(2-amino-ethyl)benzenesulfonyl fluoride; 1 µM leupeptin; 1 µM pepstatin; 1 µM aprotinin; 100 U of RNasin/ml; and 0.5 mM (each) ATP, CTP, GTP, and bromo-UTP]. Cells were then fixed with 4% paraformaldehyde and permeabilized with Triton X-100-NP-40 (0.1% each), and bromouridine incorporation into RNA was visualized by indirect immunofluorescence.
Reporter gene expression. Luciferase reporter gene constructs driven by an E1b TATA promoter containing five repeats of the Gal4 binding element (pFR-Luc vector) were obtained from Stratagene. Five repeats of the Gal4 binding element containing the herpesvirus thymidine kinase (TK) promoter or adenovirus minimal late promoter (MLP) (chloramphenicol acetyltransferase reporter constructs provided by D. Ayer, University of Utah) were PCR amplified and cloned in the pGL3 basic vector (Promega). Gal4 DNA binding domain fusion constructs of RGS12TS-S and its various deletion mutants were cloned into the pM vector (Clontech). NIH 3T3 cells were transfected with various DNA constructs by using Lipofectamine Plus reagent according to the manufacturer's suggestions. Luciferase activity in transfected cells was determined with a luciferase assay kit (Promega) 40 h following transfection. Trichostatin A (Sigma) was added to the culture medium at a 500 nM concentration 16 h following transfection. Luciferase activity was normalized for transfected ß-galactosidase determined with a Galacto chemiluminescence assay kit (Tropix, Bedford, Mass.).
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FIG.1. Subnuclear localization of RGS12TS-S expressed endogenously or ectopically and association of RGS12TS-S with the nuclear matrix. (A) Subnuclear organization of endogenous RGS12TS-S in HEK293T cells and ectopically expressed RGS12TS-S-GFP in COS-7 cells. Green represents RGS12TS-S, and red represents propidium iodide (PI)-stained nuclei (yellow represents overlapping green and red fluorescence). (B) Confocal microscopic overlay image of in situ nuclear matrix preparation of COS-7 cells expressing RGS12TS-S-GFP (green) with lamin A/C antibody-labeled nuclear structures (red) and c-myc immunoblot of nuclear and nuclear matrix fractions of COS-7 cells expressing RGS12TS-S-myc. (C) Immunoblot of RGS12TS-S and various endogenous nuclear proteins in nuclear and nuclear matrix fractions of COS-7 cells expressing RGS12TS-S-myc. Immunofluorescence measurement of endogenously expressed RGS12TS-S in HEK293T cells was performed as described previously (6). Transfection of COS-7 cells, immunofluorescence measurements, subcellular fractionation, and immunoblotting were performed as described in Materials and Methods.
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FIG. 7. RGS12TS-S inhibits DNA synthesis in various human tumor cell lines, and the RGD of RGS12TS-S is not required for this activity. (A) Confocal microscopic images showing various tumor cell lines transfected with RGS12TS-S-GFP (green) and DNA synthesis labeled with bromodeoxyuridine for 20 h (red). (B) Confocal microscopic images of tumor cells expressing RGS12TS-S(1-666)-GFP (green) and bromodeoxyuridine-labeled DNA (red).
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Subnuclear and nuclear matrix-targeting domains of RGS12TS-S. The dotted subnuclear distribution of RGS12TS-S is not shared by other members of the RGS12 protein family or any other member of the RGS protein family. Indeed, we showed that the dotted nuclear distribution of RGS12TS-S is unique to this N-terminal splice variant form of RGS12, as both RGS12B-S and RGS12P-S are distributed homogenously throughout the nucleoplasm (6). Because RGS12TS-S differs from these other splice variant forms of RGS12 by its unique 666-amino-acid N-terminal domain, we hypothesized that this region of RGS12TS-S was responsible for its unique organization within the nucleus. We initiated studies to test this hypothesis by examining the pattern of nuclear distribution of RGS12TS-S(1-685), a construct encoding the unique N-terminal domain of RGS12TS-S and 19 additional amino acids. Indeed, RGS12TS-S(1-685) expressed as a GFP fusion protein showed a pattern of distribution within the nucleus of COS-7 cells (Fig. 2A) that was indistinguishable from that of full-length RGS12TS-S (Fig. 3). Figure 2 also shows an in situ nuclear matrix preparation of COS-7 cells expressing RGS12TS-S(1-685)-GFP and a corresponding immunoblot of nuclear and nuclear matrix preparations of COS-7 cells expressing a myc-tagged form of this N-terminal domain of RGS12TS-S. As shown, RGS12TS-S(1-685), like full-length RGS12TS-S, is retained within the nuclear matrix structure of COS-7 cells with retention of its dotted subnuclear organization within the nucleoskeletal structure (Fig. 2B and C). These results suggest that the necessary structural elements for the subnuclear localization and nuclear matrix targeting of RGS12TS-S are present in its N-terminal domain.
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FIG. 2. Subnuclear localization and nuclear matrix association of an N-terminal domain of RGS12TS-S. (A) Confocal microscopic overlay images of COS-7 cells expressing RGS12TS(1-685)-GFP (green) with propidium iodide-stained nuclei (red). (B) Confocal microscopic image of in situ nuclear matrix preparation of COS-7 cells expressing RGS12TS-S(1-685)-GFP (green) with lamin A/C antibody-labeled nuclear structures (red). (C) c-myc immunoblot of nuclear and nuclear matrix fractions of COS-7 cells expressing RGS12TS-S(1-685)-myc.
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FIG. 3. Mapping of subnuclear targeting domains of RGS12TS-S. (A) Confocal microscopic overlay images of COS-7 cells expressing GFP-tagged RGS12TS-S or its various deletion constructs. (B) Schematic representation of full-length and deletion constructs of RGS12TS-S and scoring of nuclear localization and pattern of subnuclear distribution.
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Mapping of the N-terminal domain of RGS12TS-S. We first evaluated the nuclear and subnuclear localization of constructs encompassing all or portions of the N-terminal domain unique to RGS12TS-S. Construct 1-666, representing this entire domain, exhibited a pattern of nuclear and subnuclear distribution indistinguishable from that of RGS12TS-S. This result, like that obtained with RGS12TS-S(1-685)-GFP in Fig. 2, suggested that this domain has structural elements for nuclear import and targeting to subnuclear domains. Five additional constructs were prepared to map this region in more detail. Constructs 1-412 and 413-588 showed weaker nuclear localization and diffuse distribution within the nucleus, suggesting that these regions lack sequences needed for subnuclear targeting. However, constructs 413-611 and 413-666 each accumulated in the nucleus and exhibited a dotted pattern of nuclear distribution. The lack of such subnuclear targeting by construct 413-588 suggested that the 23-amino-acid sequence between amino acids 588 and 611 of RGS12TS-S contains necessary structural elements for the dotted pattern of distribution of construct 413-611 and possibly that of construct 413-666. This was confirmed by results obtained with construct 609-666, which exhibited a filamentous or lattice-like pattern of distribution within the nucleus. These results indicated that the region encompassing amino acids 589 to 611 of RGS12TS-S contains sequence elements required for the organization of these protein constructs into nuclear dots.
Mapping of the C-terminal domain of RGS12TS-S. We next evaluated the patterns of nuclear and subnuclear localization of constructs encompassing portions of the approximate C-terminal half of RGS12TS-S located distal to its unique N-terminal domain. This region of RGS12TS-S is shared entirely by RGS12B-S and RGS12P-S, RGS12 splice variants that exhibit a diffuse pattern of distribution within the nucleus. Inspection of this C-terminal domain for possible nuclear localization sequences (NLSs) showed regions of basic amino acids that could serve as nonclassical NLSs in each of the constructs that we evaluated and the presence of a single prototypic NLS at amino acids 891 to 894 (KKRK) that also conforms to a consensus motif for a nucleolar localization sequence (25). Construct 667-710, representing the region between the unique N terminus of RGS12TS-S and its RGD, localized primarily in the nucleus. Construct 711-833, representing the RGD, also accumulated in the nucleus.
Construct 834-1157, comprising the entire C-terminal domain of RGS12TS-S distal to its RGD, also localized to the nucleus, while construct 895-1157 did not. Further mapping of the region of amino acids 834 to 894 revealed that construct 867-894 predominantly localized within the nucleolus, compared to a weak nuclear localization of construct 834-866. Nucleolar localization of construct 867-894 was confirmed by colocalization of this construct with fibrillarin, a nucleolar marker (data not shown).
Relationship between nuclear matrix- and subnuclear targeting sequences of RGS12TS-S. Our confocal microscopic results showed that a region encompassing amino acids 589 to 611 of RGS12TS-S was required for the subnuclear organization of various GFP-tagged deletion constructs of this protein into nuclear dots. Indeed, GFP-tagged RGS12TS-S constructs 413-611 and 413-666 localized to these discrete subnuclear sites while RGS12TS-S constructs 1-412, 413-588, and 609-666 did not. Our findings also showed that a construct encompassing amino acids 1 to 685 of RGS12TS-S had necessary structural elements for targeting nuclear dots and the nuclear matrix. However, what remained unclear was whether the subnuclear targeting sequences of RGS12TS-S also represented the nuclear matrix-targeting sequence (NMTS) of this protein. Therefore, we undertook studies to identify the region within the unique N-terminal domain of RGS12TS-S required for targeting the nuclear matrix for comparison to the sequence of RGS12TS-S required for targeting nuclear dots. Nuclear matrix fractions were prepared from COS-7 cells transfected with the same GFP-tagged deletion constructs of RGS12TS-S that were used to identify sequences required for subnuclear targeting of nuclear dots by RGS12TS-S constructs (Fig. 3), and the expressed proteins were detected by immunoblotting with anti-GFP antibody.
Figure 4 shows the results of these nuclear matrix-targeting studies. As shown, construct 1-666 was retained in the nuclear matrix while constructs 1-412, 413-588, and 413-611 were not. Thus, sequences between amino acids 1 and 611 of RGS12TS-S alone cannot account for association of construct 1-666 with the nuclear matrix. These results, together with the observed retention of construct 413-666 in the nuclear matrix fraction, suggest that the region between amino acids 612 and 666 contributes to the NMTS of these RGS12TS-S constructs. Indeed, construct 609-666 was retained partially in the nuclear matrix fraction. Comparison of this analysis to the structural analysis of subnuclear targeting sequences of RGS12TS-S showed that the structural determinants required for nuclear matrix targeting of RGS12TS-S constructs were distinct from those needed for subnuclear targeting. Indeed, a very clear example of this could be seen in construct 413-611, which showed no nuclear matrix binding (Fig. 4) but localized to nuclear dots like RGS12TS-S itself (Fig. 3). Thus, while we hypothesized that association of RGS12TS-S with the nuclear matrix could potentially underlie its subnuclear organization into nuclear dots, as suggested for several transcription factors and other proteins, our results indicated that this is not the case.
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FIG. 4. Mapping of nuclear matrix-targeting domain in the N-terminal region of RGS12TS-S. Nuclear and nuclear matrix fractions of COS-7 cells expressing GFP-tagged RGS12TS(1-666) or various deletion constructs were subjected to GFP immunoblotting.
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RGS12TS-S subnuclear sites are distinct from sites of RNA processing, PML nuclear bodies, and PcG domains. We investigated whether RGS12TS-S nuclear dots correspond to SC-35 domains, Cajal bodies, PML nuclear bodies, or PcG domains. Confocal microscopic overlay images of COS-7 cells in Fig. 5 showed subnuclear distribution of GFP-tagged RGS12TS-S in relation to marker proteins for sites of RNA processing, PcG domains, and PML nuclear bodies. As shown, subnuclear structures containing SC-35 and p80 coilin (sites of RNA processing) as well as Sp100 (PML nuclear bodies) and Ring-1 (PcG domains) showed no overlap in distribution with RGS12TS-S subnuclear sites. RGS12TS-S nuclear dots also did not colocalize with two other PcG domain proteins, human EED and human EZH2, when expressed in COS-7 cells (data not shown). RGS12TS-S subnuclear sites also appeared distinct from recently described nuclear bodies (matrix-associated deacetylases), as subnuclear organization of RGS12TS-S is insensitive to inhibitors of histone deacetylase (data not shown). Together, these results demonstrated that RGS12TS-S occupies unique subnuclear sites that are distinct from known subnuclear domains involved in RNA processing and transcriptional regulation.
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FIG. 5. RGS12TS-S subnuclear sites are distinct from known subnuclear domains. Shown are confocal microscopic overlay images of COS-7 expressing RGS12TS-S-GFP (green) and endogenously expressed SC-35, p80 coilin, and coexpressed myc-Sp100 or myc-Ring-1 proteins (red). SC-35 and p80 coilin proteins were detected with specific antibodies, while myc-tagged Sp100 and Ring-1 proteins were detected with an anti-myc antibody.
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FIG. 6. RGS12TS-S subnuclear sites are distinct from DNA replication sites. Green represents RGS12TS-S-GFP, and red represents bromodeoxyuridine (BrdU)-labeled (45-min) replication sites. Bromodeoxyuridine labeling of DNA replication sites was performed as described in Materials and Methods.
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To examine the generality and mechanism(s) underlying this response to RGS12TS-S expression, we examined S-phase DNA synthesis in a variety of human tumor cell lines following transient expression of RGS12TS-S. We sought to examine whether RGS12TS-S requires functional Rb or p53 to inhibit S-phase DNA synthesis. Rb and p53 are transcriptional regulators that play critical roles in regulating cell cycle processes. Cell lines derived from human breast adenocarcinoma, human osteosarcoma, human adrenal small cell carcinoma, and human cervical carcinoma were selected for these studies because of their distinct Rb and p53 backgrounds (Table 1). These various cell lines were transfected with RGS12TS-S-GFP, and bromodeoxyuridine labeling (20 h) was initiated 48 h following transfection. Figure 7A shows confocal overlay microscopic images of bromodeoxyuridine incorporation and RGS12TS-S in each of these seven human cell lines. As shown, cells expressing RGS12TS-S uniformly exhibited a lack of bromodeoxyuridine incorporation, with the exception of C-33 A cells, while untransfected cells were robustly labeled. Table 1 summarizes the percentages of RGS12TS-S-GFP-expressing cells that demonstrated a lack of detectable DNA synthesis in these cell lines following bromodeoxyuridine labeling 24 and 48 h posttransfection. As shown, RGS12TS-S expression was associated with a dramatic reduction in DNA synthesis in all cell lines 24 h posttransfection, which persisted in all cells, except C-33 A cells, 48 h posttransfection. As shown, cells with functional Rb and p53 (MCF7 and U-2 OS) appeared equally as sensitive to inhibition of DNA synthesis by RGS12TS-S as were cells lacking p53 (MDA-MB-231) or lacking both Rb and p53 (MDA-MB-468 and Saos-2). These results showed that RGS12TS-S inhibition of S-phase DNA synthesis is cell type independent and occurs by mechanisms independent of Rb and p53. Structural-functional studies of RGS12TS-S showed that constructs encoding the unique N-terminal domain of RGS12TS-S, possessing both NMTSs and subnuclear targeting motifs (Fig. 3 and 4), were sufficient for inhibition of S-phase DNA synthesis (Fig. 7B).
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TABLE 1. Inhibition of bromodeoxyuridine incorporation into DNA in various human tumor cell lines transiently expressing RGS12TS-Sa
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FIG. 8. Prolonged expression of RGS12TS-S in various human tumor cell lines induces formation of multinucleated cells. (Left) Fluorescence microscopic overlay images of C-33 A, U-2 OS, and MDA-MB-231 cells expressing RGS12TS-S-GFP (green) and DAPI-stained nuclear DNA (blue). (Right) Phase-contrast pictures of cell morphology. In the C-33 A panel, RGS12TS-S-GFP transfectants were mixed with vector-transfected cells for comparison. RGS12TS-S-GFP transfectants were selected with puromycin and at 7 days following transfection were fixed and stained with DAPI. All surviving cells exhibited dotted subnuclear distribution of RGS12TS-S and multinucleation.
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FIG. 9. RGS12TS-S represses and fails to colocalize with sites of RNA synthesis while RGS12TS-S(413-710) colocalizes with and fails to repress nascent RNA synthesis in COS-7 cells. Shown are confocal microscopic overlay images of RGS12TS-S-GFP- and RGS12TS-S(413-710)-GFP (green)-transfected and nontransfected (control) COS-7 cells with nascent RNA synthesis labeled with bromo-UTP (red).
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FIG. 10. RGS12TS-S represses Gal4-E1b TATA luciferase reporter gene expression. Shown are results for NIH 3T3 cells expressing the Gal4 DNA binding domain alone or its fusion constructs of full-length RGS12TS-S (1-1157) and various deletion constructs of RGS12TS-S along with the luciferase reporter construct. Data are expressed as fold activation of luciferase activity over that observed following expression of the Gal4 DNA binding domain alone. Data are normalized for transfection efficiency by cotransfected ß-galactosidase and represent means ± standard errors of the means of three independent experiments. Trichostatin A (500 nM) treatment was performed for 24 h.
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We identified unique structural regions within the N-terminal domain of RGS12TS-S required for its dotted subnuclear localization. The characteristic dotted subnuclear organization of RGS12TS-S is reminiscent of subnuclear organization of various nuclear proteins involved in specialized functions including DNA replication, transcription, RNA processing, DNA repair, and gene silencing. It is now becoming increasingly clear that the cell nucleus is functionally compartmentalized and that proteins are targeted to discrete subdomains within the nucleus to perform specialized functions. Nuclear matrix structures provide the underlying support for such spatial organization of nuclear proteins. NMTSs have been identified within several transcription factors including AML-1B (27), Pit-1 (14), glucocorticoid receptor (20), and YY1 (4) as well as in protein kinase A anchoring protein AKAP95 (1). RGS12TS-S, like those nuclear proteins with specialized functions, associates with the nuclear matrix, and we have here identified sequence elements that target RGS12TS-S to nuclear matrix structures. The NMTS of RGS12TS-S and those identified in several other nuclear proteins, however, show no obvious sequence similarities, which suggests that various nuclear proteins utilize diverse NMTSs for their targeting of appropriate sites within the nucleus. It is interesting that the NMTS of RGS12TS-S is distinct from sequence elements involved in its dotted organization. This NMTS targets RGS12TS-S to the nuclear matrix but fails to promote its dotted subnuclear organization. A separate motif is involved in dotted organization of RGS12TS-S. Thus, nuclear matrix targeting and dotted subnuclear organization are clearly independent processes governed by two distinct sequence motifs of RGS12TS-S. This finding is in contrast to a recent report with transcription factor AML-1B, in which a single 31-amino-acid motif was found to promote both nuclear matrix and subnuclear targeting of this transcription factor (27).
The subnuclear sites occupied by RGS12TS-S represent a novel subnuclear compartment distinct from sites occupied by Cajal bodies, SC-35 protein, PcG proteins, and PML nuclear bodies, as well as that involved in DNA replication and synthesis of nascent RNA transcripts. This distinctive pattern of subnuclear targeting of RGS12TS-S suggests that this RGS protein is not directly involved in DNA replication, RNA synthesis and processing, gene silencing like PcG group proteins, or the function of the PML nuclear bodies. Therefore, RGS12TS-S subnuclear structures represent either a novel functional subcompartment of the nucleus or a storage site of certain nuclear proteins destined for shipment to appropriate locales to meet specific cellular needs.
RGS12TS-S expression apparently prevents cell entry into and/or progression through the S phase. It is not clear what step(s) of the cell cycle is the target of RGS12TS-S action in promoting inhibition of S-phase DNA synthesis. However, S-phase block by RGS12TS-S is transient, and cells eventually overcome this block to resume DNA synthesis. Cells escaping S-phase DNA synthesis block continue to be viable, although they invariably exhibit aberrant nuclear morphologies and/or multiple nuclei. Such multinucleated cells could result from multiple rounds of nuclear division without cytokinesis or alternatively from initial endoreduplication and subsequent cell division with a higher DNA content. Previous studies have shown a similar accumulation of multiple and abnormally shaped nuclei following DNA damage in cells lacking the cell cycle regulator p21 (23), ectopic expression of AIM-1 or its kinase-deficient mutant (21), and coexpression of constitutively active Rb and BRG1 in cells lacking BRG1 (28). Mammalian hepatocytes and osteoclasts and early embryos of insects undergo nuclear division without cytokinesis, leading to multinucleated cells as part of normal developmental paradigms (9). The underlying mechanisms of RGS12TS-S-induced cell cycle arrest and dysregulation of cell cycle processes are not clear at present. Nevertheless, our findings provide the initial basis to suggest that RGS12TS-S affects cell cycle progression, leading to multinucleated cells and a decrease in the proportion of cells entering S phase. It is worthwhile to point out that HEK293T cells do not exhibit multinucleated cells, although these cells endogenously express RGS12TS-S. It is possible that HEK293T cells are endowed with or deficient in some factor(s) that allows normal growth even in the continued presence of RGS12TS-S, as is the case with SW-13 and C-33 A cells, which escape Rb-induced growth arrest due to a deficiency in the SWI/SNF chromatin-remodeling protein BRG1 (28).
The major cell cycle regulators Rb and p53 inhibit cell cycle progression by transcriptional regulation of various components involved in this process. A large network of proteins also indirectly regulates cell cycle progression by influencing the transcriptional regulatory activities of Rb and/or p53. Because RGS12TS-S is competent to influence cell cycle processes even in cells lacking Rb and/or p53, the involvement of Rb and p53 proteins in the mechanism of RGS12TS-S action could readily be ruled out. The demonstration that RGS12TS-S is a transcriptional repressor suggests that cell cycle regulation by RGS12TS-S could be a consequence of this activity. RGS12TS-S is endowed with a single modular domain (amino acids 413 to 666) that functions, when tagged with an appropriate DNA binding domain, as a transcriptional repressor on an E1b TATA promoter. However, on a chromatin-embedded template this domain is not active as a transcriptional repressor unless present in context with sequence module 1-412. This finding indicates that the sequence element within amino acids 1 to 412 targets the repressor domain (amino acids 413 to 666) at appropriate sites to allow repression of transcription from chromatin templates. The sequence element present within amino acids 1 to 412 could bind a DNA sequence that positions the repressor domain in proximity to appropriate promoter sites or could allow its recruitment to appropriate promoter sites via binding to other proteins. This sequence (amino acids 1 to 412) is endowed with known protein binding modules including PDZ and PTB (phosphotyrosine binding) domains, and it remains to be seen whether these modules actually participate in regulating transcriptional repressor activity of RGS12TS-S on chromatin templates. It should be pointed out that the PDZ protein binding module is found only within a limited number of nuclear proteins, including a transcriptional coactivator, TAZ, in the transcriptional coactivator function of which the PDZ domain seems to play an essential role (12). Transcriptional corepressors, like SMRT and N-CoR, are targeted to appropriate promoter sites also through their protein binding modules and in turn recruit ancillary proteins, including histone deacetylase, to inhibit transcription. RGS12TS-S inhibition of transcription, however, does not require histone deacetylase.
The findings that RGS12TS-S localizes within the cell nucleus, represses transcription, and inhibits S-phase DNA synthesis are of particular interest and importance, as they provide the first insight into possible nuclear functions of this protein. Indeed, RGS12TS-S is the first example of an RGS protein with such activities, although combined concomitant transcriptional repressor and cell cycle-regulatory activities are found in p53, Rb, and other tumor suppressor proteins. Interestingly, a recent study showed that RGS12TS-S transcripts are down regulated in human larynx tumors (10), as observed also for tumor suppressor proteins. However, further studies will be required to determine precisely the role of RGS12TS-S in transcriptional repression and cell cycle regulation during normal and abnormal growth, development, and differentiation. Our findings implicate the unique N-terminal domain of RGS12TS-S in its transcriptional repressor and cell cycle-regulating activities and demonstrate that the RGD is entirely dispensable for these functions. These results provide new evidence for modular functional domains of RGS12TS-S, those implicated in nuclear functions and those implicated in interactions with G proteins. While RGS proteins were originally described by the presence of an RGD, the domain required for their ability to inactivate G protein signaling by functioning as GTPase-activating proteins for G
subunits, G
subunits have rarely been described within the nucleus, with the sole exception being G
i2. The present results, therefore, provide evidence for novel and previously unrecognized roles of an RGS family member in the nucleus, which are quite distinct from regulation of cell surface G protein-coupled receptor signaling.
We thank John G. Koland for careful reading of the manuscript.
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