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Molecular and Cellular Biology, November 2002, p. 7491-7500, Vol. 22, No. 21
0270-7306/02/$04.00+0 DOI: 10.1128/MCB.22.21.7491-7500.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Heesuk Zang,1,3 Yutaka Takahashi,1 Shiann-Tarrng Jou,1,
Jian Feng,1 Hideaki Nakajima,1,3 and James N. Ihle1,4*
Department of Biochemistry,1 Howard Hughes Medical Institute, St. Jude Children's Research Hospital,4 Department of Biochemistry, University of Tennessee Health Science Center, Memphis, Tennessee 38105,3 Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 117242
Received 7 May 2002/ Returned for modification 15 July 2002/ Accepted 2 August 2002
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The activation of Jak2 initially requires transphosphorylation of a critical tyrosine in the activation loop, Y1007, comparable to most tyrosine kinases (6). Following activation of kinase activity, there are a number of additional tyrosine residues that are phosphorylated. One of the major sites of autophosphorylation within murine Jak2 is Y966 (T. Matsuda and J. N. Ihle, unpublished data). In assessing the potential role for this site, we initially sought to determine which of the known signaling proteins would bind to the site by affinity isolation. Strikingly, a number of proteins known to be involved in signal transduction bound a tyrosine-phosphorylated peptide derived from the amino acid sequence surrounding Jak2 Y966. Among these proteins were phospholipase (PLC)-
1, PLC-
2, the phosphatidylinositol (PI) 3-kinase adapter subunits p85
and p85ß, the PI 3-kinase catalytic subunit p110
, SHC, and Stat5a and -b. The binding was unique to Jak2-Y966 among the phosphorylation sites examined and specifically required the phosphorylation of Y966. Because of the unique properties of Y966, we used a large-scale affinity purification approach to identify novel proteins that would be recruited into complexes at this site and identified a novel protein of 70 kDa. Here we report the properties of p70, demonstrate that mice lacking p70 are not detectably altered relative to wild-type mice, and show that p70 is not required for the responses of cytokines that utilize Jak2.
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Isolation of p70 protein. Fifty liters of DA3 cells was grown to a confluence of 2 x 106 cells/ml in RPMI medium (Gibco-Life Technologies) containing 10% FCS and 5 ng of IL-3/ml. Following two washes in PBS to remove growth factor, cells were cultured overnight in RPMI medium containing 1% FCS, pelleted, and lysed in ice-cold lysis buffer (see above). Nuclei were removed by centrifugation at 10,000 x g. Approximately 100 ml (15 mg/ml) of lysate was applied to a Q-Sepharose column (2.5 by 10 cm) previously equilibrated in ice-cold buffer containing 50 mM Tris, pH 8.0, 50 mM NaCl, 5 mM EDTA, 100 µg of PMSF/ml, and 1 mM Na3VO4. The column was washed extensively in lysis buffer, and bound proteins were step eluted with lysis buffer containing 150 mM NaCl. The eluate was passed sequentially over a Sepharose column to which had been conjugated the peptide TSQICKGMEYLGTKR (1 by 2 cm), and a Sepharose column to which had been conjugated the tyrosine-phosphorylated peptide TSQICKGMEpYLGTKR (1 by 1 cm). The latter column was washed extensively with load buffer and distilled water, and bound proteins were eluted with 2% acetic acid. Following removal of the solvent by lyophilization, the eluted material was suspended in Laemmli sample buffer, resolved by SDS-PAGE, and detected by Coomassie blue staining. The protein band representing p70 was extracted from the polyacrylamide gel, and the peptide sequence of p70 protein was obtained as described earlier (23).
Cloning of p70 cDNA. The peptides obtained from microsequencing p70 were used to screen a database of expressed sequence tags (ESTs), identifying an EST that coded for three of the five peptides (GenBank accession no. AA190028). The EST fragment was used as a probe to screen a randomly primed mouse brain cDNA library (Stratagene). Positive clones (4) representing partial fragments of p70 cDNA were isolated in a screen of 7.5 x 105 individual clones conducted according to standard techniques, and cDNA inserts were subcloned into pBluescript and subjected to sequence analysis. Overlapping cDNA fragments were pieced together to generate a full-length cDNA.
Rabbit polyclonal antibodies. A peptide corresponding to the predicted C terminus of p70 (CPTGGFNWRETLLQE) was synthesized, conjugated to glutaraldehyde-activated keyhole limpet hemocyanin, and used to immunize two rabbits (Rockland). Before use, antibodies were purified by affinity chromatography over a peptide column.
Transfections, immunoprecipitations and Western blots. COS7 cell transfections were performed with Polyfect (Qiagen) according to the manufacturer's instructions. Cell lysates were made by lysing cells in ice-cold lysis buffer (see above), clarified by centrifugation, rotated at 4°C with specific antibody for 2 h, and incubated 1 h with 20 µl of protein A Sepharose. Beads were washed five times with cold wash buffer (20 mM Tris, pH 7.8, 150 mM NaCl, 1 mM EDTA, 0.1% Triton X-100, 100 µM PMSF, and 1 mM Na3VO4), and bound protein was eluted with Laemmli sample buffer and separated by SDS-PAGE. Protein was transferred to nitrocellulose using a semidry transfer apparatus (Bio-Rad), blocked with 3% bovine serum albumin in TBST (10 mM Tris [pH 8.0], 150 mM NaCl, 0.1% Tween 20), incubated at 23°C for 1 h with specific antibody, washed with TBST, incubated for 1 h with horseradish peroxidase-conjugated secondary antibody (Amersham), and developed according to the manufacturer's instructions.
Generation of p70-deficient mice.
p70 genomic clones were isolated from a W9.5 embryonic stem cell BAC library (Incyte Genomics, St. Louis, Mo.) by screening with [
-32P]dCTP-labeled EST no. AA198028 as a probe. A restriction enzyme map of the p70 locus was determined using BAC clones and murine genomic DNA. A 10-kb fragment of p70 genomic sequence containing two exons encoding amino acid residues 9 to 88 was subcloned into pBluescript. A 2.2-kb SphI fragment containing the two exons was replaced with a cDNA encoding the neomycin resistance gene driven by the thymidine kinase promoter oriented in the direction opposite to that of p70 transcription. A cDNA encoding the diphtheria toxin gene driven by the thymidine kinase promoter (25) to be used in negative selection was then placed 3' of the p70 homology region to complete the targeting construct. p70-deficient mice were generated essentially as previously described (22). Briefly, 129/SvJ E14 ES cells were electroporated with 20 µg of SalI-linearized targeting vector and selected with 350 µg of Geneticin (Gibco-BRL)/ml. Four hundred fifty G418-resistant clones were isolated, expanded, and analyzed by Southern analysis for correct integration of the mutation, by probing with a BamHI genomic fragment 3' to the region of homology within the targeting construct. Five clones heterozygous for the induced mutation were injected into C57BL/6 blastocyts, which were then implanted into pseudopregnant females. Male chimeras from three clones successfully passed the induced mutation through the germ line. Heterozygote agouti mice were interbred to produce wild-type and p70-deficient littermates on a mixed 129/SvJ/BL/6 background. Genotype was determined by PCR using the following primers: wild-type allele, CGGTGAGTAAGAATCCGCTCAGTA and CACATGCTGCCTGAACGCTTCTT (300 bp); and knockout allele, CGGTGAGTAAGAATCCGCTCAGTA and GCATCGCCTTCTATCGCCTTCTTG (150 bp). Animals were housed under specific-pathogen-free conditions under institutional guidelines.
DNA and RNA analysis. Genomic DNA was isolated by lysing tissue in buffer (100 mM Tris, pH 8.0, 5 mM EDTA, 0.2% SDS, 200 mM NaCl, and 250 µg of proteinase K/ml), incubating 12 h at 55°C, extracting with phenol-chloroform, and precipitating with ethyl alcohol. After restriction enzyme digestion, DNA was separated by agarose gel electrophoresis and transferred to positively charged nylon (Amersham) for hybridization with labeled probes (Rediprime; Amersham) according to standard techniques. RNA was prepared by extracting tissue with Trizol according to the manufacturer's instructions (Gibco BRL), separated by formaldehyde gel electrophoresis, and analyzed as described above. A Northern blot of murine poly(A)+ RNA (Clontech) was probed with a radiolabeled fragment of p70 cDNA corresponding to nucleotides encoding amino acid residues 469 to 501.
Histology. For organ histological analysis, tissues were fixed overnight in 10% buffered formalin (Fisher Scientific). Fixed tissues were embedded in paraffin, sectioned (10 µm), and stained with hematoxylin and eosin.
FACS analysis and cell purification. Whole spleens, thymi, or lymph nodes were dissected from littermates and crushed through a 70-µm-pore-size nylon mesh in PBS containing 2% FCS. Bone marrow was obtained by flushing femurs and tibias with the same buffer. Red blood cells were lysed by addition of buffer (pH 7.2) containing 150 mM NH4Cl, 1 mM KHCO3, and 0.1 mM EDTA; debris was removed by straining; and cells were labeled with fluorescein isothiocyanate (FITC)-conjugated antibodies as indicated. Routine fluorescence-activated cell sorter (FACS) analysis was performed with a FACSCalibur (Becton Dickinson). For proliferation assays, B and T cells were purified to >98% purity by labeling with FITC-conjugated Thy1.2 antibody (Pharmingen) and phycoerythrin (PE)-conjugated B220 antibody (Pharmingen), and sorting with a MoFlo Cell Sorter (Cytomation). In some instances, B cells were purified by complement-mediated lysis utilizing anti-Thy1.2 monoclonal antibody and a mixture of guinea pig and rabbit complement (Cederlane) according to the instructions of the manufacturer.
Proliferation assays. B or T cells (105) were placed in individual wells of a round-bottomed 96-well plate in RPMI media containing 10% FCS, 10 mM HEPES, pH 7.0, 2 mM glutamine, 1 mM sodium pyruvate (Gibco BRL), 50 µM ß-mercaptoethanol (Gibco BRL), 0.1 mM nonessential amino acids (Gibco BRL), and 10 µg of gentamicin (Gibco BRL)/ml. B-cell mitogens were at the following concentrations: immunoglobulin M (IgM), 10 µg/ml; IL-4, 100 ng/ml; anti-CD40, 1 µg/ml; and lipopolysaccharide, 10 µg/ml. For T-cell proliferation assays, a solution of 10 µg of the indicated antibody/ml was used to coat the bottom of each well by incubation at 37°C for 2 h. IL-2 at 25 ng/ml was included where indicated. Each assay was conducted in triplicate, and the data presented are representative of three individual experiments.
Blood cell counts and colony assays. To analyze peripheral blood, samples were taken from the orbital sinus using heparinized microhematocrit capillary tubes (Fisher). Twenty microliters was analyzed by a MASCOT Hemavet 3700R counter (CDC Technologies), scoring for white blood cells and red blood cells. Hematocrits were calculated by a Hemavet counter based on red blood cell counts and mean corpuscular volume. To assay bone marrow progenitor colony-forming ability, bone marrow was flushed as described above, cells were plated, and colonies were scored as previously described (27).
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1, PLC-
2, the PI 3-kinase adapter subunits p85
and -ß, the PI 3-kinase catalytic subunit p110
, and SHC (Fig. 1). To identify novel proteins that might be recruited to this site, a large-scale affinity column approach was used as detailed in Materials and Methods and the affinity-purified proteins were sequenced. Protein microsequencing of a 70-kDa protein identified five peptides, three of which were found to be encoded in the sequence of a cDNA for an uncharacterized EST (GenBank accession no. AA190028). To clone the complete p70 cDNA, one of the ESTs was used to isolate four overlapping cDNA fragments from a murine library. The predicted protein from the compiled cDNA sequences would contain 603 amino acids with a calculated molecular mass of 67.5 kDa and included all five peptides identified by microsequencing (Fig. 2A ).
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FIG. 1. Peptide pulldown assay with Jak2-derived peptides. Cells were starved of growth factor overnight and were either left untreated (-) or treated with IL-3 for 5 min (+). Lysates were prepared and incubated with Sepharose beads to which nonphosphorylated Y966 peptide (TSQICKGMEYLGTKR) or tyrosine phosphorylated pY966 peptide (TSQICKGMEpYLGTKR) was conjugated, as outlined in Materials and Methods. Bound proteins were separated by SDS-PAGE, and tyrosine-phosphorylated proteins were analyzed by Western blotting with antiphosphotyrosine antibodies.
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FIG. 2. The p70 gene. (A) Nucleotide sequence and predicted amino acid sequence of p70 open reading frame. Underlined amino acids indicate peptides obtained from microsequencing-purified p70 protein, as described in Materials and Methods. (B) Alignment of C-terminal region of p70 with a consensus sequence built by the Protein Family (Pfam) database for members of the phosphoglycerate mutase family (1). The two arginines, two histidines, and glutamic acid predicted to be involved in catalytic activity are highlighted. Identical residues are indicated with two dots; chemically similar residues are indicated with one dot. (C) Peptide competition analysis. Proteins precipitated from lysates of DA3 cells by anti-p70 peptide antibody were separated by SDS-PAGE and transferred to nitrocellulose. The membrane was probed with anti-p70 peptide antibody. Prior to immunoprecipitation, lysates were incubated for 15 min with the following: lane 1, no peptide; lane 2, antigenic peptide; and lane 3, unrelated peptide. Number of kilodaltons is given on right. (D) Interaction of p70 with phosphorylated Jak2 Y966 peptide. DA3 cytoplasmic lysates were subjected to immunoprecipitation with anti-p70 peptide antibodies (lane 1) or affinity pulldown assays utilizing nonphosphorylated Y966 peptide conjugated to Sepharose (lane 2) or phosphorylated Y966 peptide conjugated to Sepharose (lane 3). Blotting antibody was anti-p70 peptide antibody.
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Screening of databases resulted in the identification of both human and Drosophila homologues of murine p70, and, importantly, both genes contained the SH3 and potential catalytic domain of the bis-phosphoglycerate mutase family.
Biological characterization of p70. To initially characterize the biological functions of p70, an antiserum against a C-terminal peptide sequence was generated. As illustrated (Fig. 2C), this antibody recognizes a protein of 70 kDa and this recognition was blocked by the immunizing peptide but not by an unrelated peptide. Moreover, this antiserum detected a 70-kDa protein that was specifically isolated by the Jak2 Y966 phosphopeptide affinity column and was not obtained from a peptide affinity column that contained the nonphosphorylated peptide (Fig. 2D). To further assess the ability of p70 to interact with Jak2, COS7 cells were cotransfected with expression vectors for Jak2 and a C-terminal Flag-tagged version of p70. As illustrated in Fig. 3, p70 was readily detected in the immunoprecipitates of Jak2. Conversely, immunoprecipitation of p70 resulted in the coimmunoprecipitation of Jak2. However, in spite of the readily detectable association of the two proteins in cotransfection experiments, we have been unable to demonstrate the coimmunoprecipitation of the endogenous proteins under a variety of conditions resulting in the activation of Jak2.
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FIG. 3. Coimmunoprecipitation of Jak2 and p70. Cos cells were cotransfected as indicated, and lysates were subjected to immunoprecipitation (IP)/Western blot analysis with the indicated antibody.
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FIG. 4. p70 expression analysis. (A) Northern blots containing poly(A)+ RNA from multiple murine tissues were probed with a p70 cDNA probe (upper panel) or a glyceraldehyde-3-phosphate dehydrogenase (GAPDH) probe (lower panel). Positions of p70 mRNA and GAPDH mRNA are indicated, as are positions of standard markers, in kilobases. (B) Lysates prepared from the indicated cell lines were subjected to immunoprecipitation/Western blot analysis utilizing anti-p70 peptide antibody. (C) Lysates prepared from the indicated murine tissues were subjected to immunoprecipitation/Western blot analysis utilizing anti-p70 peptide antibody.
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FIG. 5. p70 targeting. (A) Structure of the p70 targeting construct. The two filled boxes represent putative exons 2 and 3. NheI (N), BamHI (B), and SphI (S) sites are indicated, as is the location of the probe utilized in Southern analysis to distinguish wild-type and targeted alleles (black bar). Neo, neomycin resistance cassette; DTA, diphtheria toxin cassette. (B) Southern blot of BamHI-digested genomic DNA from +/+, +/-, and -/- mice probed with the external probe illustrated in Fig. 4A. Bands generated by the wild-type (+/+), heterozygote (+/-), and targeted (-/-) alleles are indicated. WT, wild type; KO, knockout. (C) Northern analysis of RNA isolated from wild-type (+/+) or p70-deficient (-/-) thymi. The blot was probed with a p70 cDNA probe that was 3' to the targeted exons as indicated in Materials and Methods. The bottom panel indicates the 28S and 18S RNAs as loading controls. (D) Immunoprecipitation (IP)/Western blot analysis of levels of p70 protein in splenic lysates prepared from +/+ (WT), +/- (Het), and -/- (KO) littermates.
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Because of the relatively high expression of p70 in hematopoietic tissues, various hematological parameters were examined. There were no significant differences between wild-type and mutant mice in the number of red cells, hemoglobin levels, or hematocrits. Similarly, there were no significant effects on the numbers and morphology of peripheral blood leukocytes, including neutrophils, eosinophils, basophils, monocytes, and lymphocytes. The recovery of bone marrow cells was normal, and in colony assays of bone marrow hematopoietic progenitors, there were no significant alterations in the frequency and morphology of colonies in response to a variety of cytokines (Table 1). Importantly, the response to cytokines that are known to require Jak2, including Epo and IL-3, was not detectably affected by the absence of p70.
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TABLE 1. In vitro colony formation of bone marrow hematopoietic progenitors from wild-type and p70-deficient littermates in response to various cytokinesa
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FIG. 6. Flow cytometry analysis of T and B cells. Calculated percentages are displayed within each quadrant. (A) Thymocytes from wild-type and p70-deficient mice were stained with Cyc-conjugated anti-CD4 and FITC-conjugated anti-CD8. (B) Splenocytes from wild-type and p70-deficient mice were stained with Cyc-conjugated anti-B220 and FITC-conjugated anti-CD3 antibodies (top pair). Alternatively, splenocytes were stained with PE-conjugated anti-Thy1.2, Cyc-conjugated anti-CD4, and FITC-conjugated anti-CD8. The CD4/CD8 profile of splenocytes gated on Thy 1.2-positive cells is displayed (bottom panel). (C) Splenocytes from +/+ or -/- mice were stained with FITC-conjugated anti-IgD, PE-conjugated anti-IgM, and Cyc-conjugated anti-B220. The IgM/IgD profile of splenocytes gated on B220-positive cells is displayed. Shown are representative FACS analyses of at least six mice of each genotype.
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FIG. 7. T- and B-cell proliferation assays. FACS-purified splenic T cells (left) or FACS-purified splenic B cells (right) were cultured in the presence of the indicated stimuli for 48 h. Cell proliferation was measured by adding 1 µCi of [3H]thymidine to the cultures. Standard deviations for triplicate samples are indicated by the error bars. These data are representative of three T-cell and B-cell proliferation assays. LPS, lipopolysaccharide; WT, wild type; KO, knockout.
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, is also isolated from the Y966 phosphopeptide affinity column through its association with the PI 3-kinase adapter subunits p85
and -ß (S.-T. Jou and Ihle, unpublished data). Studies are in progress to assess the potential for p70 to interact with several known adapter proteins. As illustrated, interaction with Jak2 can also be shown to occur in cells in which the two proteins are overexpressed. However, numerous attempts to demonstrate coimmunoprecipitation of endogenous proteins under conditions of activation of Jak2 have failed. It is possible that the fraction of Jak2 activated in these situations, which would be limited by the receptor numbers, is too low to allow detection of the proteins. Alternatively, it is possible that overexpression gives rise to associations that are not physiologically evident. Similarly, isolation on affinity columns may be occurring at protein concentrations that are not present in a physiologically relevant receptor complex. In this regard it is important to note that, although Stat5a and Stat5b bind specifically to the tyrosine-phosphorylated mJak2-Y966 peptide, the recruitment and activation of Stat5a and -b in the context of the Epo receptor require specific receptor tyrosines (19). Since it was not possible to strictly rule in, or out, a role for p70 in Jak2 activity based on these biochemical approaches, we also utilized a genetic approach.
Beyond a potential role in signaling from cytokine receptors utilizing Jak2, the properties of p70 provide few additional clues regarding its physiological role. The gene is conserved, as evidenced by the existence of homologues in other species. However, in these species, p70 is similarly an uncharacterized gene product of an EST and consequently nothing is known regarding its function. The gene is widely expressed in mouse tissues, which does not allow a focus for function on a particular lineage of cells or tissue. The protein contains an SH3 domain that would implicate it in signal transduction. The protein also contains a domain with homology to the catalytic domain of members of the bis-phosphoglycerate mutase family of enzymes. However, we have been unable to demonstrate a catalytic function for this region of p70. Members of the phosphoglycerate mutase family of enzymes are not known to have protein interaction domains, such as an SH3 domain. The function of the SH3 domain of p70 might be either to target it to a specific molecular complex or to enable its interaction with regulatory proteins.
One important approach to defining gene function is to determine the consequences of eliminating the gene in the general context of mouse development. As illustrated here, we were able to develop a strain of mice in which the p70 gene contained an internal deletion that resulted in a protein null phenotype. Extensive characterization of these mice has failed to identify any phenotypic characteristics that are different from those of wild-type mice. Most specifically, none of the receptor systems that utilize Jak2 that we examined were affected by the absence of p70, demonstrating the lack of a nonredundant, essential role in signaling. The absence of any phenotypic alterations in such cases can often be attributed to functional redundancy between family members.
This work was supported by NRSA 5-F32-CA83269 to N.C., by Cancer Center CORE grant CA21765, by grants RO1 DK42932 and PO1 HL53749 to J.N.I., and by the American Lebanese Syrian Associated Charities (ALSAC).
Present address: Department of Molecular Pathology, University of Texas M. D. Anderson Cancer Center, Houston, TX 77030. ![]()
Present address: Department of Pediatrics, National Taiwan University Hospital, Taipei 100, Taiwan. ![]()
Present address: Division of Cellular Therapy, The Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639, Japan. ![]()
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