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Molecular and Cellular Biology, November 2002, p. 7993-8004, Vol. 22, No. 22
0270-7306/02/$04.00+0 DOI: 10.1128/MCB.22.22.7993-8004.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Center for Research on Reproduction and Women's Health,1 Department of Psychiatry,2 Center for Experimental Therapeutics, University of Pennsylvania Medical Center, Philadelphia, Pennsylvania 19104,3 Lipid Cell Biology Section, Laboratory of Cell Biochemistry and Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 208924
Received 30 May 2002/ Returned for modification 22 July 2002/ Accepted 12 August 2002
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Structural and genetic evidence implicated the radial spoke-central pair structures as key regulators of dynein activity. The radial spoke heads make transient contact with structures that project from the central pair microtubules (35). The central pair is composed of two microtubules (designated C1 and C2 in algae) and their associated structures which include the central pair projections, central pair bridges linking the two tubules, and central pair caps which are attached to the distal or plus ends of the microtubules.
Mutants of the alga Chlamydomonas reinhardtii, a well-studied model system of ciliary and flagellar function, highlight the importance of the central apparatus. Mutants that lack the central apparatus or some of its components have paralyzed flagella (1, 6, 11, 23, 36). Polypeptide mapping of the Chlamydomonas central pair suggests the presence of at least 23 different proteins in addition to tubulin (1, 31). Some of these proteins are uniquely associated with either the C1 or C2 microtubule, indicating that the two microtubules may be functionally specialized. PF16 is located along C1; PF20 is located along the C2 microtubules. To date, the genes encoding four components of the central pair, PF15, PF16, PF20, and KLP1, have been cloned (31). The Chlamydomonas PF20 mutant has paralyzed flagella, and isolated axonemes lack the entire central apparatus. The Chlamydomonas PF20 gene encodes a 606-amino-acid protein that contains five contiguous WD repeats. These repeats are found in a number of proteins with diverse cellular functions including ß-transducin and dynein intermediate chains. Immunogold labeling of wild-type axonemes indicated that PF20 is localized along the length of the C2 microtubule on the intermicrotubule bridges connecting the two central microtubules (32). We have cloned mammalian orthologues of PF20 in order to study the role of central pair proteins in mammalian axoneme assembly and function. Here we describe the interaction of Pf20 with Spag6, the mammalian orthologue of Chlamydomonas PF16, another central apparatus protein containing protein-protein interaction domains (armadillo repeats) that is essential for the structural integrity and function of the axoneme. This information provides a framework for understanding the functionally significant network of interacting proteins in flagella and cilia.
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Cloning of the human PF20 and mouse Pf20 cDNAs. A search of public databases identified a human expressed sequence tag (AA832473) which showed high homology to Chlamydomonas PF20. Primers were designed to amplify the expressed sequence tag sequence, and the radiolabeled PCR product was used to screen a mouse germ cell cDNA library (Stratagene, La Jolla, Calif.). The inserts of the positive clones were amplified with T3 and T7 primers, cloned into pCR 2.1-TOPO TA vector (Invitrogen, Carlsbad, Calif.), and sequenced with an ABI 373A automated sequencer. After the mouse Pf20 cDNA was cloned, it was used to rescreen a human testis cDNA library (5, 20) with the same protocol used to clone the mouse Pf20 cDNA.
5' RACE. To obtain the sequence of the 5' end of the mouse Pf20 cDNA, 5' rapid amplification of cDNA ends (5'-RACE) was performed on mouse testis poly(A)+ RNA with the Marathon cDNA amplification kit (Clontech, Palo Alto, Calif.). A primer was designed within the 5' end of the cDNA clone isolated from the mouse germ cell library (5'-AGAAGCCACGAAGTCACCACAGGAGT-3') which was used with the Marathon cDNA adaptor primer to generate 5'-RACE products. The PCR products were cloned into the pCR 2.1-TOPO TA vector and subjected to DNA sequence analysis.
Northern blot analysis. Human and mouse multiple tissue RNA blots were purchased from Clontech. Germ cells were separated by the Staput method (37). Examination of the isolated fractions under Nomarski optics revealed that the purities of the pachytene spermatocytes, round spermatids, and condensing spermatids were 85, 90, and 95%, respectively. Total RNA was isolated with Trizol (Life Technologies, Inc., Grand Island, N.Y.), and 30 µg of total RNA was separated on a denaturing gel, transferred to a nylon membrane, and hybridized as described previously (28). To characterize the two Pf20 transcripts, two probes were generated by PCR. The 5' probe encompassing nucleotides coding for amino acids 20 to 292 was generated with the following primers: forward, 5'-CATTGGCTTGTCACCCACCG-3', and reverse, 5'-CTCACAACTGTGACCAGC-3'. The 3' probe, encompassing nucleotides coding for amino acid residues 372 to 608, was generated with a forward primer, 5'-CAGATCCAAACGTGACTTCA-3', and a reverse primer, 5'-CCAGTTTGTGAATTTGCCCCGA-3'.
Fusion protein expression and antibody production. A cDNA encoding an N-terminal portion of mouse Pf20 (amino acid residues 1 to 212) was amplified from a Pf20 cDNA clone with the following primers: forward, 5'-GGGAATTCCATATGATGGCTGCTCCGTCTGGGGTC-3', and reverse, 5'-CTGAAGCTTCCCCTTTGAGGTCAGCAATGAG-3'. The cDNA was inserted into NdeI/HindIII sites of the pET28a vector (Novagen, Madison, Wis.). The resulting fusion protein contains six-His tags at both the NH2 and C termini. The construct was transformed into BL21(DE3) cells, and fusion protein synthesis was induced with 1 mM isopropyl-ß-D-thiogalactopyranoside (IPTG). The cell pellets were sonicated in lysis buffer (100 mM NaH2PO4, 10 mM Tris-Cl, 8 M urea, pH 8.0). Bacterial lysates were centrifuged at 13,000 x g for 30 min and incubated with nitrilotriacetic acid-chelate resin (Qiagen, Valencia, Calif.) at 4°C overnight. The resin was washed with wash buffer (the same as lysis buffer except that the pH was adjusted to 6.3), and the His-tagged protein was eluted with elution buffer (the same as lysis buffer except that the pH was adjusted to 4.5). Eluate fractions were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis in 10% polyacrylamide gels stained with Coomassie blue. The protein concentration was determined with Pierce reagents (Pierce, Rockford, Ill.). The purified protein was identified on Western blots with an anti-His-tag monoclonal antibody (Novagen). Four injections of 500 µg of pure protein were used to generate rabbit polyclonal antibody (Rockland, Gilbertsville, Pa.).
Western blot analysis. Equal amounts of protein (50 µg/lane, except for the sperm, at 10 µg/lane) were heated to 95°C for 10 min in sample buffer, loaded onto 10% sodium dodecyl sulfate-polyacrylamide gels, electrophoretically separated, and transferred overnight to polyvinylidene difluoride membranes (Millipore Corporation, Bedford, Mass.). Membranes were blocked (Tris-buffered saline solution containing 5% nonfat dry milk and 0.05% Tween 20 [TBST]) and then incubated with the anti-mouse Pf20 antibody (1:600 dilution) at 4°C overnight. After being washed in TBST, the blots were incubated with an anti-rabbit immunoglobulin conjugated to horseradish peroxidase (1:2,000 dilution) for 1 h at room temperature. After washing, the Pf20 protein was detected with Super Signal chemiluminescent substrate (Pierce).
Preparation of sperm for immunolocalization of Pf20. Sperm were obtained from mouse cauda epididymis and centrifuged at 3,000 x g, washed twice in phosphate-buffered saline (PBS), resuspended in PBS, and layered onto polylysine-coated slides. The preparations were fixed with 4% paraformaldehyde and permeabilized with 1% Triton X-100. Following permeabilization, slides were blocked in PBS containing 10% goat serum (1 h at 37°C) and incubated with primary antibody (rabbit anti-Pf20) overnight at 4°C. The secondary antibody, fluorescein-conjugated goat anti-rabbit immunoglobulin G, was applied, and Pf20 staining was visualized by using an Olympus (Tokyo, Japan) IX-70 epifluorescence microscope and Meta Morph Imaging System software (Universal Imaging Corp., West Chester, Pa.).
Electron microscope immunocytochemistry. Cauda epididymal sperm were fixed and prepared for immunoelectron microscopy as previously described (28). Sections were reacted with anti-mouse Pf20 antibody, washed, and then incubated with rabbit anti-mouse immunoglobulin G labeled with 20-nm gold particles.
Pf20-green fluorescent protein (Pf20-GFP) and Spag6-red fluorescent protein (Spag6-RFP) fusion constructs. A cDNA containing the full coding sequence of mouse Pf20 cDNA was cloned into EcoRI/BamHI sites of the pEGFP-N2 vector, creating the pEGFP/PF20 plasmid. The Pf20 cDNA was generated with the following primers: forward, 5'-CGAGAATTCTGATGGCTGCTCCGTCTGGGGTC-3', and reverse, 5'-CGCGGATCCCGGATCCACAACCGAATGGTGCC-3'. The DNA sequences were confirmed. A murine Spag6-RFP construct was constructed in the pDsRed/N1 vector.
Cell culture and transient transfection. Chinese hamster ovary cells were obtained from the American Type Culture Collection (Manassas, Va.) and cultured in Dulbecco's modified Eagle's medium containing 10% heat-inactivated fetal bovine serum at 37°C. At 60% confluence, cells were washed twice with serum-free medium before addition of 1 µg of cDNA encoding the Pf20-GFP and/or Spag6-RFP fusion proteins and 3 µl of FuGENE6 (Roche, Indianapolis, Ind.).
Living cells were imaged at room temperature 48 to 72 h after transfection. Confocal images were collected with an LSM410 confocal microscope system equipped with a krypton-argon Omnichrome laser (Carl Zeiss Inc., Thornwood, N.Y.) and a C-Apochromat 63- by 1.2-numerical-aperture water-immersion objective (Zeiss). Excitation wavelengths were 488 nm for GFP and 568 nm for RFP and 488 and 568 nm for dual imaging. Emissions were collected with a 514- to 540-nm band-pass filter for enhanced GFP (EGFP), and a 590-nm long-pass filter for RFP. Adobe Photoshop 5.0 was also used for image processing (Adobe Systems Inc., San Jose, Calif.).
Yeast two-hybrid assays. A cDNA encoding WD repeats of mouse Pf20, which corresponds to amino acids 398 to 639, was subcloned into the EcoRI/SalI sites of pBD-GAL4cam (Stratagene) and was used to screen a testis library. The complete coding sequence of Spag6 was subcloned into the EcoRI/SalI sites of pAD-GAL4 (Stratagene). The BD-TB-RBP and AD-TB-RBP plasmid constructs used were previously described and contain the complete coding sequence of TB-RBP (2, 5, 37); the AD-TB-RBP205 plasmid construct was previously described and contains a cDNA truncated at amino acid 205 of TB-RBP (5, 37). Pairs of BD and AD plasmids were cotransformed into YRG-2, and transformants were selected on synthetic minimal (SD) medium lacking leucine and tryptophan. Protein-protein interactions were detected by growth on SD medium lacking leucine, tryptophan, and histidine. Transformations were performed according to the manufacturer's instructions (Stratagene).
Mapping of the Pf20 gene with a radiation hybrid panel. The mouse Pf20 gene was mapped with the mouse-hamster T31 radiation hybrid panel previously described (34) and obtained from Research Genetics (Huntsville, Ala.). Briefly, DNA from 100 hybrid lines was used as a template for PCR amplification with a mouse-specific fragment of 130 bp with primers designed from the 3' end of the Pf20 cDNA. Primer sequences and PCR conditions were as follows. The forward primer was 5'-AGGGCATTCCCTCTAAGGCT-3', and the reverse primer was 5'-TGGTCCATATATTATTCACCCAAA-3'. Each PCR mixture contained 25 ng of genomic DNA, 0.23 mM primers, 0.23 mM (each) deoxynucleoside triphosphates, 0.25 U of Taq polymerase, and buffer containing 1.5 mM MgCl2 in a 15-µl total volume. Thermal cycling consisted of a 5-min denaturation step at 94°C, followed by 35 cycles of 30 s at 94°C, 30 s at 58°C, and 60 s at 72°C and a final 10-min extension at 72°C. PCR products were electrophoresed in 2% agarose gels (Gibco BRL, Grand Island, N.Y.) containing 0.1-mg/ml ethidium bromide solution (Sigma, St. Louis, Mo.).
Nucleotide sequence accession number. The nucleotide sequences of the mouse and human cDNAs and their deduced amino acid sequences have been deposited in GenBank (accession no. AF490390 [mouse] and AF490391 [human]).
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FIG. 1. Alignment of the mouse, human, and Chlamydomonas PF20 amino acid sequences. Sequence similarities are boxed, and identical residues are shaded. The coiled-coil domain in the mammalian proteins is indicated by dashed underlining, and the seven contiguous WD repeats are numbered and underlined.
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FIG. 2. Map of mouse chromosome 1 and localization of Pf20. The Pf20 gene was placed between markers D1Mit330 and D1Mit128 and is most closely linked to D1Mit330 (log of the odds score of >14). Centiray distances between loci are indicated, 1 cR being equal to 83.7 kb for chromosome 1 (34). cen, centromere; tel, telomere.
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FIG. 3. Northern blot analysis of PF20 mRNAs extracted from indicated tissues. The blots were reprobed with actin cDNAs. (A) Northern blot analysis of mouse Pf20 mRNA expression. (B) Northern blot analysis of human PF20 mRNA expression. S. intestine, small intestine; Periph., peripheral.
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FIG. 4. Deduced genomic structure of the Pf20 gene and analysis of the two Pf20 transcripts with region-specific probes. The top shows the deduced genomic structure of the Pf20 gene and exons included in the 2.5- and 1.4-kb transcripts. Also shown are results of Northern blot analysis with a 5' probe and a 3' probe. Lanes 1 and 3, liver RNA; lanes 2 and 4, testis RNA.
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FIG. 5. Expression of Pf20, Spag6, and actin mRNAs in mouse male germ cells. Northern blots probed sequentially with the indicated cDNAs are shown.
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FIG. 6. Western blot analysis of Pf20 protein expression in mouse tissues. The figure shows a Western blot of sperm and tissue protein extracts probed with an antibody generated against the N terminus of the Pf20 protein. An immunoreactive protein band migrating near 71 kDa, compatible with the predicted size of Pf20, is indicated.
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FIG. 7. (A) Localization of Pf20 in mouse sperm flagella. Shown are phase-contrast (left panels) and immunofluorescence (right panels) micrographs of 1% Triton X-100-permeabilized sperm incubated with the anti-Pf20 antibody, preimmune serum, or antibody preabsorbed with recombinant Pf20 antigen. (B) Electron microscopic immunochemistry. (Subpanel A) Clustering of gold-labeled antibody in the axoneme cores (arrows). (Subpanel B) Transverse section of a sperm tail showing colloidal gold labeling around the central pair. (Subpanel C) Longitudinal section showing colloidal gold labeling along a central pair microtubule.
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FIG. 8. Pf20-WD can interact with Spag6 in vivo. The open reading frame of TB-RBP and the cDNA encoding WD repeats of Pf20 were cloned in frame into the pBD-GAL4cam plasmid. The open reading frames of TB-RBP and Spag6 and the cDNA encoding the truncated TB-RBP205 mutant were cloned in frame into the pAD-GAL4 plasmid. Pairs of BD and AD plasmids were cotransformed and streaked on SD plates lacking leucine, tryptophan, and histidine with growth indicating interaction. (A) BD-TB-RBP + AD-TB-RBP; (B) BD-TB-RBP + AD-TB-RBP205; (C) BD-TB-RBP + AD-Spag6; (D) BD-Pf20-WD + AD-Spag6; (E) BD-Pf20-WD + AD-TB-RBP; (F) empty segment. These studies confirmed an interaction of Spag6 and the Pf20 WD repeats.
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FIG. 9. Association of Pf20 with Spag6. (A) Spag6-RFP induces Pf20-GFP localization to microtubules in cotransfected CHO cells. Living CHO cells were cotransfected with Spag6-RFP and Pf20-GFP. In cells that were coexpressing both Spag6-RFP and Pf20-GFP, Spag6-RFP (subpanel B) was found to be exclusively colocalized with Pf20-GFP (subpanel A) in a subset of microtubules. The overlap is shown in subpanel C. In living CHO cells that were transfected with Pf20-GFP alone (subpanel D), Pf20-GFP was found dispersed in a cytoplasmic pattern and no Pf20-GFP labeled microtubules were observed in the transfected cells. All are confocal images. Images A, B, and C are projections of eight z-section series, obtained with simultaneous dual-color scanning (bars = 10 µm). (B) A portion of Pf20 WD-GFP binds to Spag6-RFP-labeled microtubules in cotransfected CHO cells. (Subpanels A to C) Living CHO cells cotransfected with Spag6-RFP and Pf20 WD-GFP. In cells coexpressing both constructs, Pf20 WD-GFP (subpanel A) was found to colocalize to Spag6-RFP-labeled microtubules (subpanel B). Arrowheads in insets in subpanels A, B, and C show colocalization of Pf20 WD-GFP (subpanel A) and Spag6-RFP (subpanel B) in microtubules. Subpanel C is a merged image of subpanels A and B. Pf20 WD-GFP (subpanel D) is present in a cytoplasmic and nuclear pattern when expressed alone in CHO cells, and no Pf20 WD-GFP-labeled microtubules were found in the transfected cells. All are confocal images. Images A, B, and C are projections of eight z-section series, obtained with simultaneous dual-color scanning (bars = 10 µm). (C) Western blot analysis of Pf20 in extracts of transfected COS-1 cells. COS-1 cells were transfected with mouse Pf20 cDNA (pEGFP/Pf20) or empty vector. (Subpanel A) Total extract of COS-1 cells showing expression of Pf20-GFP in cells transfected with Pf20-GFP cDNA but no expression in nontransfected COS-1 cells or cells transfected with the empty plasmid vector. (Subpanel B) The same as subpanel A, except that the antibody was blocked by the purified protein. Subpanel C shows that COS-1 cells transfected with pEGFP vector and pEGFP/Pf20 express the GFP.
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FIG. 10. Pf20 mRNA and protein expression in Spag6+/+ and Spag6-/- mice. (A) (upper two panels) Northern blot analysis of testicular RNA for Spag6 and Pf20; (lower panel) Western blot analysis for Pf20 and Akap82 in testicular extracts. (B) Western blot analysis of epididymal sperm from wild-type and Spag6-deficient mice for Spag6, Pf20, and Akap82.
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FIG. 11. Immunostaining of Pf20 in Spag6+/+ and Spag6-/- sperm. Phase-contrast and corresponding immunofluorescence photomicrographs are shown of wild-type and Spag6-deficient Triton X-100-permeabilized sperm analyzed with anti-Pf20 antibody.
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While this work was being prepared for publication, Pennarun et al. reported the cloning of the human PF20 cDNA (21). The nucleotide and amino acid sequences of the cDNA reported by these authors are identical to ours. These authors also detected four PF20 transcripts in human testis by using a combination of Northern blotting and reverse transcription-PCR. Two of these transcripts contained sequences encoding the C-terminal WD repeats, and two encoded N-terminal sequences that would lack the WD repeats. They concluded that the latter represented the 1.4-kb mRNA based on its hybridization with a probe representing the putative 3' untranslated region of the transcripts. This conclusion contrasts with our findings, which indicate that the smaller transcript encodes the C terminus containing the WD repeats. A mouse cDNA sequence deposited by Carninci et al. (accession no. AK016618) contains an open reading frame encoding the C terminus of mouse Pf20 consistent with a transcript size of 1.4 kb. Consequently, the collective evidence indicates that the 1.4-kb transcript in the mouse is derived from an alternative transcriptional start site yielding an mRNA that encodes a protein containing the C terminus of Pf20. However, it must be recognized that we did not determine whether mouse transcripts exist corresponding to the short human variants reported by Pennarun et al. (21). The discrepancies between the findings in the human and mouse tissues may be explained by species differences. Consistent with this idea, Pennarun et al. (21) concluded that the human PF20 gene is composed of 16 exons whereas our analysis based on data deposited in public databases of mouse genomic sequences indicates that the murine Pf20 gene is comprised of 19 exons.
The high level of Pf20 expression in the testis, its low abundance or apparent absence from other tissues, and localization of Pf20 to the sperm tail are consistent with a role for Pf20 in sperm flagellar structure or function. Whether the 1.4-kb mRNA encodes a protein and whether it has functions related to or distinct from those of the protein encoded by the 2.5-kb transcript remain to be determined, but both proteins contain the WD repeats which presumably mediate protein-protein interactions.
One of the proteins which appears to associate directly or indirectly with Pf20 is Spag6, another axonemal protein that binds to microtubules. The evidence supporting this notion includes the colocalization of Spag6 and Pf20 in cotransfected cells, yeast two-hybrid studies demonstrating that the Pf20 WD repeats interact with Spag6, and the loss of Pf20 from sperm lacking Spag6. The interactions between Spag6 and Pf20 may maintain the structural integrity of the axoneme and account for the loss of the central apparatus in Spag6-null mice (28). In Chlamydomonas, two-dimensional electrophoresis analysis revealed that the flagella of pf16 mutants lack three proteins having molecular masses of 57 kDa (probably PF16) and 128 and 32 kDa, but PF20, with an estimated molecular mass of 66.6 kDa, is evidently not one of the three missing polypeptides (6). Thus, the Spag6-Pf20 interaction that we have observed may be a feature of mammalian but not algal axonemes. It should be noted that the methods that we have employed to assess Pf20-Spag6 interaction cannot distinguish between direct binding and binding through the intermediation of a linker protein. This possibility may be difficult to exclude experimentally, particularly if the ability of Spag6 to interact with Pf20 is augmented by Spag6 binding to microtubules. Whether other WD repeat-containing proteins also associate in a similar fashion with Spag6 is a question of interest that requires further investigation.
In summary, we have cloned cDNAs encoding the mammalian orthologues of a Chlamydomonas WD repeat-containing protein, PF20, known to be important for axoneme assembly and function in algae. The mammalian and algal proteins are highly conserved. We have also obtained evidence that Pf20 interacts with another axoneme protein, the armadillo repeat-containing Spag6, which is important for axoneme motility and stability in Chlamydomonas (31, 32) and mice (28). If Pf20 and Spag6 are asymmetrically distributed along the central pair microtubules in mammalian axonemes as they are in Chlamydomonas, the interactions between these proteins identified in the present work provide a mechanism for communication between the two central pair microtubules.
These studies were supported by NIH grant R01-HD37416-02; R.S. was a Fogarty International Center Scholar supported by D43-TW/HD00671; J.B. was supported by T32-HD07305. The immunoelectron microscopy was performed in the Imaging Core of the University of Pennsylvania Diabetes Center, supported by DK19525.
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