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Molecular and Cellular Biology, June 2003, p. 4126-4138, Vol. 23, No. 12
0270-7306/03/$08.00+0 DOI: 10.1128/MCB.23.12.4126-4138.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Centre de Recherche de Biochimie Macromoléculaire, CNRS UPR 1086, 34293 Montpellier Cedex 5, France
Received 2 December 2002/ Returned for modification 26 January 2003/ Accepted 25 March 2003
| ABSTRACT |
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| INTRODUCTION |
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At the anaphase, chromatids must be separated from each other and move toward the spindle poles. In animal cells, the final stage of anaphase movement may reflect changes in the poleward and polar ejection forces. These changes could include a decrease in the polar ejection force, which would result in a positive kinetochore poleward force inducing the movement of chromatids to the pole. According to this hypothesis, it has been shown that the induction of anaphase in Xenopus egg extracts requires the degradation of Xkid by the anaphase-promoting complex (APC) and the proteasome (13). However, surprisingly, a different degradation timing has been described for human Kid which is still present in anaphase centromeres (37).
The mitotic targets for degradation are selected by the specific ubiquitin ligase, APC. The APC regulates exit from mitosis and events in G1 (44). This E3 is regulated by two different modulators, the Cdc20/Fizzy and Cdh1/Fizzy-Related proteins (10, 21, 23, 35). Both activators transiently interact with the APC in a cell cycle-specific manner. APC/Cdc20 complex mediates the degradation of a number of targets, including securin and cyclin B. This event is essential to mitotic progression (9, 23). Cdh1 protein, on the other hand, mainly controls the progression through the G1 phase by ensuring the complete proteolysis of cyclin B and Cdc20 (26, 38). Substrates recognized by the APC contain destruction signal sequences that target them for degradation. Three different destruction motifs have been described: the destruction box (D-box) with consensus of RXXL (where X is any amino acid) (15), the KEN box (KEN-box) with consensus KEN (26), and the A box (A-box) (8, 22). D-box-containing substrates typically appear to be recognized by either APC/Cdc20 or APC/Cdh1 or by both (4, 26, 32, 42). The KEN-box is believed to be recognized exclusively by APC/Cdh1 (26). Finally, the A-box is required for D-box-dependent degradation of Aurora A by APC/Cdh1 (8, 22).
We demonstrate here that Xkid is proteolyzed both in vitro and in vivo by APC/Cdc20 and APC/Cdh1 in a D-box-independent manner. Moreover, we identify a degradation domain with sequence GXEN, within the C terminus of this chromokinesin, that is required to induce the APC/Cdc20 and APC/Cdh1-dependent degradation of this protein.
| MATERIALS AND METHODS |
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D-box(4/5)Xkid498-600, and GST-
(GLEN)Xkid498-600 fusion proteins were obtained by a first amplification of the fragment from amino acids 498 to 600 from the wild type, the
D-box(1-5) Xkid mutant and the
(GLEN)Xkid mutant by PCR and a subsequent subcloning blunt into the SmaI cloning site of the pXen3 vector. For the immunization protocol, pBluescript-Xkid was cut with EcoRI, and the resulting C-terminal insert of Xkid corresponding to amino acids 309 to 651 (Xkid
309C) was cloned into the EcoRI site of pGEX4T2 vector. The Xkid
309C-GST fusion protein was expressed in Escherichia coli. Inclusion bodies were prepared and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis according to standard procedures. The fusion protein was electroeluted and used to immunize rabbits. Immune sera was affinity purified on immobilized Xkid
309C-GST. The Xenopus anti-cyclin B2, anti-Cdc20, anti-CDC27, and anti-Cdh1 antibodies were obtained as previously reported (7, 23). Anti-
-tubulin and the antibodies against the active form of ERK protein (PP-ERK) were obtained from P. Mangeat (Montpellier, France) and New England Biolabs (catalog no. 9106S). Western blots were treated as described by Castro et al. (7). In vitro production of mRNAs and [35S]methionine-labeled proteins. mRNAs encoding full-length human cyclin B1, Xenopus EMI1, GST, Cdh1, wild type, Xkid mutants, and fusion proteins were transcribed in vitro with T7 or SP6 polymerase. When used for protein degradation assays, the mRNAs were translated in a rabbit reticulocyte lysate in the presence of [35S]methionine.
Xenopus egg extracts and protein translation and degradation. Metaphase II-arrested oocyte extracts (CSF extracts) were prepared from unfertilized Xenopus eggs as described in Lorca et al. (23). Protein translation of Xenopus Cdh1 mRNA in interphase extracts was as described previously (6, 11). For protein degradation assays, 1 µl of either 35S-labeled cyclin B or Xkid was incubated at room temperature with 20 µl of CSF or interphase extracts that had been (or not) supplemented with Cdh1 mRNA (1 h before).
Site-directed mutagenesis.
Internal or point mutations of Xkid protein were achieved by using the QuikChange site-directed mutagenesis kit according to the manufacturer's protocol (Stratagene). The sequences of the primers used to generate each mutant can be supplied on request.
D-box(1-5) was obtained by sequential mutagenesis with the same primers used for the individual D-box mutations. N-terminal and C-terminal Xkid mutants were obtained by PCR amplification by using the primers at the corresponding amino acid positions. The presence of all of the mutations was confirmed by DNA sequencing of the Xkid cDNAs.
mRNA microinjection in Xenopus oocytes. Oocytes were microinjected with 20 ng of wild-type or mutated Xkid mRNAs or with the same amount of Cdh1 mRNA where indicated. Three oocytes per time point were homogenized in 10 µl of homogenization buffer (20 mM Tris [pH 7.5], 50 mM NaCl, 50 mM NaF, 10 mM ß-glycerophosphate, 5 mM Na4P2O7, 1 mM EDTA). After extract centrifugation (13,000 rpm for 3 min at 4°C), the clear supernatant was recovered, and the equivalent volume of one oocyte was used for Western blot analysis. When Xkid mRNA was injected in maturing oocytes, Western blot analysis allowed the selective detection of ectopic Xkid, since, despite the fact that anti-Xkid antibodies detect both endogenous and ectopically expressed Xkid mutated forms, the low endogenous Xkid levels were not visualized at the enhanced chemiluminescence exposure time used to reveal the ectopical mutated Xkid forms.
| RESULTS |
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Cdc20). Oocyte homogenates were then used for immunoblot analysis with anti-Xkid, anti-cyclin B2, anti-PPERK (the active form of ERK), and anti-
-tubulin antibodies (loading control). As shown in Fig. 1B (Chx), Xkid levels significantly dropped in Chx-treated oocytes compared to nontreated oocytes (CT) concomitantly with the degradation of cyclin B2 and the inactivation of ERK (7). Unlike the decrease of Xkid amount observed in Chx-treated oocytes, Xkid levels remained constant when the APC activity was blocked in these oocytes by microinjection of anti-Cdc20 antibodies prior Chx treatment (Fig. 1B, Chx+
Cdc20). In agreement with the findings of Perez et al. (25), these results indicate the presence of a concomitant degradation and neosynthesis of Xkid at the metaphase-I-to-anaphase-I transition. We next analyzed Xkid proteolysis at meiotic exit by activating metaphase II-arrested oocytes with the calcium ionophore A32187. Endogenous levels of Xkid and cyclin B2 in these oocytes were examined at different times postactivation. As expected, endogenous cyclin B2 was completely degraded 10 min after ionophore treatment (Fig. 1C, lower panel). Surprisingly, only a small decrease in the Xkid levels were observed after oocyte activation, indicating either a partial degradation or a concomitant degradation and neosynthesis of this protein (Fig. 1C, upper panel). To discern between these two possibilities, we repeated the same experiment in the presence of the protein synthesis inhibitor Chx. As shown in Fig. 1D, endogenous Xkid importantly decreased at 10 min and was almost completely degraded 20 min after ionophore treatment, although a residual protein level remained. We observed an acceleration of the degradation pattern of endogenous Xkid in Chx-treated oocytes compared to CT (compare Fig. 1C and D). However, we attributed this difference to the variability of the kinetics of activation of distinct batches of oocytes by ionophore treatment. These results indicate that Xkid is degraded both in the transition from metaphase I to anaphase I and at meiotic exit and that, in both cases, in vivo neosynthesis of this chromokinesin rapidly replaces the degraded protein.
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Because it has been previously described that the amino-terminal fragment of cyclin B, which contains the D-box sequence, blocks Xkid proteolysis (13), we next investigated whether the degradation of this protein could be mediated by a D-box motif. Xkid contains five putative D-box sequences at amino acids 69 to 72, 141 to 144, 455 to 458, 509 to 512, and 573 to 576. We tested whether these sequences specified Xkid degradation by using site-directed mutagenesis to convert the arginine residue of the RXXL of each D-box sequence to alanine. The stability of the resulting constructs was assessed in CSF+Ca2+ and in Cdh1 mRNA-supplemented interphase egg extracts. Surprisingly, except for the small delay observed in the proteolysis pattern of the
D-box(4) mutant, the point mutation of the individual D-box mutants had no effect on Xkid degradation (Fig. 2D) either in CSF+Ca2+ (left panel) or in Cdh1-supplemented (right panel) extracts. These results suggest that Xkid may be degraded in a D-box-independent manner. However, to eliminate a possible cooperative effect among the five D-box motifs, we developed a mutant form of Xkid wherein the five D-box sequences were mutated. The quintuple D-box(1-5) mutant only slightly slows down Xkid degradation, indicating that the proteolysis of this protein by either APC/Cdc20 or APC/Cdh1 is not mediated by a D-box motif (Fig. 3). Since Xkid protein sequence has no putative KEN-box or A-box motifs, Xkid might be proteolyzed in a D-box/KEN-box/A-box-independent pathway.
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N(1-530) in which only the last 121 amino acids were left. Thus, since
N(1-498) is normally degraded, the lack of proteolysis observed in this mutant can be due to the presence of a destruction sequence between amino acids 498 and 530. In order to test this possibility, we developed a mutant form of Xkid lacking amino acids from 498 to 530 [Fig. 4A,
(498-530)]. This mutant was degraded normally in both CSF+Ca2+ and in Cdh1-containing interphase extracts (data not shown), indicating that sequence from 498 to 530 of Xkid does not include a degradation signal. We cannot exclude the possibility that one of the lysines present at positions 521, 523, and 524 is required for Xkid ubiquitination and degradation; however, if this is the case, a supplementary lysine takes over this role in the
(498-530) Xkid mutant. Thus, we concluded that the mutant
N(1-530) is probably not big enough to be degraded.
When C-terminal mutants were analyzed, we observed that the proteolysis of the C-terminal truncated forms
C(619-651),
C(601-651), and
C(581-651) were not affected. However, mutants
C(521-651),
C(541-651), and
C(561-651) were completely stabilized in both CSF+Ca2+ and Cdh1-containing interphase extracts (Fig. 4A). These results indicate that a putative destruction sequence may be present at the C-terminal sequence of Xkid between amino acids 561 and 581.
Given the identification of this region as required for Xkid degradation, we created three internal mutated forms of Xkid lacking amino acids from 561 to 568, from 569 to 576, and from 577 to 581. Mutant
(561-568) was clearly stabilized compared to mutants
(569-576) and
(577-581), which were normally degraded, showing that a destruction signal may be present between amino acids 561 and 568 (sequence 561GLENQPTW568).
To further identify the minimal sequence required for signaling APC/Cdc20 and APC/Cdh1-dependent degradation of Xkid, we constructed four internal mutated forms of Xkid:
(561-564) (lacking sequence GLEN),
(563-566) (lacking sequence ENQP), and
(565-568) (lacking sequence QPTW). We also constructed an internal mutated form of Xkid (
556-560), which comprised a contiguous sequence to the 561-to-568 region in order to eliminate a possible participation of this sequence to the destruction signal. As shown in Fig. 4B and C, only the mutated forms lacking sequences GLEN [mutant
(561-564)] and ENQP [mutant
(563-566)] were importantly stabilized in both CSF+Ca2+ and Cdh1-containing interphase extracts. These results indicate that the destruction signal resides within the sequence GLEN.
Finally, to completely identify this new degradation signal, we constructed a series of point mutated forms of Xkid in which every amino acid of the sequence 561GLEN564 was substituted by an alanine. The results of the degradation analysis showed that destruction of E563A and N564A mutants was considerably delayed in the CSF+Ca2+ extracts and completely blocked in the Cdh1-containing interphase extracts, whereas the substitution of L562 to alanine did not affect the proteolysis of this protein in either extract. Surprisingly, the G561A form was importantly stabilized in the CSF+Ca2+ extracts, but it was normally degraded in Cdh1-containing interphase extracts (Fig. 4D, CSF+Ca2+ and INT+Cdh1, respectively). This would suggest that, despite being within the same domain, the proteolysis signal of Xkid is not the same for APC/Cdc20 and APC/Cdh1.
In vivo degradation of Xkid by APC/Cdc20 and APC/Cdh1 is mediated by the proteolysis sequence GXEN. In order to further characterize the sequence of Xkid required for APC/Cdc20 and APC/Cdh1 to induce the degradation of this protein, we analyzed in vivo the proteolysis pattern of all of the point mutants described above by both E3 complexes.
To study the in vivo degradation of Xkid by APC/Cdc20, we measured the proteolysis of this chromokinesin at the transition from metaphase I to anaphase I. To this end, the mutated Xkid mRNAs were microinjected into maturing oocytes 2 h after progesterone treatment. Subsequently, at GVBD, total protein synthesis was blocked by the addition of Chx. Two hours later, oocytes were homogenized, and the stability of the ectopically expressed Xkid mutants was analyzed by Western blotting.
To measure in vivo degradation of Xkid by APC/Cdh1, we first microinjected stage VI oocytes, which are devoid of Cdh1, with the mRNA encoding this protein and, 1 h later, with the mRNA for the different mutated forms of Xkid. After 1 h of ectopic Xkid protein expression, Chx was added to the oocyte buffer to block protein synthesis, and the oocytes were homogenized at the indicated times. Protein levels of the Xkid mutants were analyzed by Western blotting.
As observed in vitro, Xkid wild-type protein was clearly degraded in vivo by both APC/Cdc20 and APC/Cdh1 (Fig. 5A, Wt, and 5B, Wt+Cdh1). However, unlike the in vitro results, both in vivo APC/Cdc20- and APC/Cdh1-dependent degradation of Xkid was strongly delayed in G561A, E563A, and N564A mutants, whereas substitution of the leucine 562 to alanine did not affect Xkid proteolysis (Fig. 4A and B, respectively). To date, we cannot explain the reason why the in vitro and in vivo APC/Cdh1-dependent degradation patterns of the G561A mutant are different. A possible explanation could involve an incorrect in vitro folding of the ectopically translated protein in interphase egg extracts. However, the in vivo results clearly demonstrate that the glycine residue of the GLEN sequence is part of the degradation signal. Thus, all of these results show the presence of a new destruction motif in the Xkid protein, with the sequence GXEN, recognized by both the APC/Cdc20 and APC/Cdh1 complexes to induce degradation of this chromokinesin.
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D-box(1-5) mutant. Finally, we constructed a third fusion protein by merging the same C-terminal fragment of the wild-type Xkid in which amino acids 561GLEN564 were deleted. We then assayed the degradation pattern of these constructs in interphase Xenopus egg extracts supplemented with Cdh1. As shown in Fig. 6A, GST-KID498-600 fusion protein was degraded with a pattern similar to that of wild-type Xkid protein. According to the small delay of proteolysis observed in the
D-box(1-5) Xkid mutant, the destruction of GST-
D-box(4/5)Xkid498-600 was only slightly slowed down. Nevertheless, the GST-
(GLEN)XID498-600 fusion mutated form was completely stable in these extracts, indicating that, similar to the other proteolysis signals, the GXEN sequence acts as a transposable degradation signal.
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We next sought to determine whether, similar to the D-box-containing peptide, a GXEN-containing peptide could compete and block the D-box-dependent degradation of cyclin B. With this aim we tested the ability of a GXEN-containing peptide to inhibit D-box-dependent degradation of cyclin B by APC/Cdh1 in interphase Xenopus egg extracts. We used the GSTKID498-600 and the GST-
(GLEN)XID498-600 fusion proteins as a source of GXEN and control peptides, respectively. As described above (Fig. 6A) GST-KID498-600 fusion protein is completely degraded in Cdh1-containing interphase egg extracts; however, when overexpressed, the APC capacity to induce its degradation is exceeded, and it will compete with other substrates to bind APC. Thus, we measured D-box-dependent degradation of cyclin B in Cdh1-containing egg extracts in which ectopic mRNA translation of GST-KID498-600 and GST-
(GLEN)XID498-600 induced a large overexpression of these two fusion proteins (data not shown). As shown in Fig. 6C, although cyclin B was clearly stabilized when GXEN-containing protein (GST-KID498-600) was overexpressed, it was degraded when the GXEN-mutated form of this protein was present into the extracts [GST-
(GLEN)KID498-600]. As expected, Xkid proteolysis was only blocked by the GXEN-containing protein. These results indicate that the GXEN sequence clearly competes not only with the GXEN-containing substrates but also with the D-box-containing substrates to be degraded by APC/Cdh1.
GXEN-dependent degradation of Xkid is not regulated by the binding of this chromokinesin to DNA. It has been recently shown that the ubiquitin-proteasome-dependent degradation of the Cdk inhibitor, Xic1, is regulated by the presence of DNA in a nuclear-like environment (43). Since Xkid protein sequence have two helix-hairpin-helix DNA-binding motifs at its C terminus, near the GXEN motif, we sought to determine whether APC-dependent proteolysis of Xkid could be regulated by the binding of this chromokinesin to the DNA. To answer this question, we added demembranated sperm chromatin (2,000/µl) in Cdh1-containing interphase egg extracts. One hour later, 35S-radiolabeled Xkid was added, and the levels of this protein were analyzed by autoradiography at different times. As shown in Fig. 7, DNA addition did not modify the proteolysis pattern of Xkid, indicating that the APC-dependent degradation of this protein might not be regulated by its binding to the DNA.
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| DISCUSSION |
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A great number of proteins are considered to be degraded by the APC, e.g., cyclin A and B (36), Cdc20 (40), securin (46, 47), Nek2A (17), or Aurora A (6, 22). Despite the fact that all of these proteins are targeted for degradation by this ubiquitin ligase, their individual proteolysis is sequentially programmed during the cell cycle. This regulation is mainly due to the association of the APC with two different modulators, Cdc20 and Cdh1. Moreover, APC substrates carry conserved degradation motifs that are required for their proteolysis. The current model proposes the presence of three different motifs, the D-box (RXXL), the A-box, and the KEN-box. The D-box sequence acts as a degradation signal that targets both APC/Cdc20- and APC/Cdh1-dependent proteolysis. The A-box is a regulatory rather than a proteolysis sequence that modulates D-box-dependent degradation of Aurora A. Finally, the KEN-box has been considered a signal that exclusively targets APC/Cdh1-dependent degradation. These degradation signals directly interact with the modulators, allowing APC-substrate interaction (3, 18, 27, 33).
Our results demonstrate that Xkid degradation is mediated by both Cdc20 and Cdh1 in an APC-dependent manner, since immunodepletion of the APC subunit, CDC27, or the addition of the APC inhibitor EMI1 completely blocked proteolysis of this chromokinesin. Moreover, although Xkid presents five putative D-box motifs, its proteolysis is D-box independent. We have identified a domain of Xkid required for APC/Cdc20- and APC/Cdh1-dependent degradation of this protein. This domain comprises the sequence GXEN that shares a certain sequence similarity to the KEN-box. However, despite this similarity, the GXEN-box clearly differs from the KEN-box by the fact that, contrary to the latter domain, it is not only recognized by APC/Cdh1 but also by APC/Cdc20. We conclude that the GXEN-box could correspond to a new different proteolysis signal.
One of the distinctives that defines the degradation signals is their capacity to confer proteolysis of a nondegradable protein when a small motif containing this degradation signal is fused. Our results show that fusion of GST to a C-terminal domain of Xkid containing the GXEN sequence results in the degradation of the merged protein, confirming that this domain shares this property with the A-box, D-box, and KEN-box degradation sequences.
Another characteristic of a proteolysis signal is to confer a correct timing of protein degradation during the cell cycle. Xenopus Kid is proteolyzed at the metaphase-anaphase transition and during late mitosis and overexpression of a nondegradable form of this protein during this transition impairs chromosome separation (2, 13). The APC/Cdc20 and the APC/Cdh1 complexes are sequentially activated from metaphase to mitosis exit and G1 (10, 20, 48). APC/Cdc20 activity first appears at metaphase and is later replaced in anaphase by APC/Cdh1. Current thinking is that Cdh1 has to be dephosphorylated before it can bind and activate the APC, and this happens late in metaphase when cyclin B/cdk1 activity disappears (21). A switch from APC/Cdc20 to APC/Cdh1 happens at anaphase (16). Thus, Xkid degradation must be performed by both APC/Cdc20 and APC/Cdh1 in order to assure continuous and complete disappearance of this protein at the metaphase-anaphase transition and late mitosis. We showed here that both APC/Cdc20- and APC/Cdh1-dependent degradation of Xkid are mediated by the GXEN sequence, indicating that this proteolysis motif is also capable to confer the appropriate proteolysis timing of this protein during the cell cycle.
A third feature of a proteolysis signal is to mediate the recognition of the substrate by the APC complex and to induce their association. Accordingly, our results show that both D-box and GXEN-box peptides compete for the APC/Cdh1-dependent degradation of Xkid and cyclin B. These findings indicate that, similar to the D-box and KEN-box sequences, the GXEN-box might mediate the recognition and the interaction of the substrate with the APC.
Finally, a last property of a proteolysis signal is that this motif is conserved in different species. Regarding the GXEN sequence, we have found only limited homology in the region corresponding to the GXEN motif (561GLEN564 in Xenopus spp. versus 568PEEK571 in humans and 563AVEK566 in mice). Nothing is known about Kid proteolysis in the mouse; however, degradation of human Kid does not seem to be regulated in the same fashion as Xenopus Kid proteolysis. In this regard, human Kid is still present in anaphase chromosomes (14, 37), whereas Xkid is completely degraded at the metaphase-anaphase transition (2, 13). Interestingly, the fact that the mechanism of Kid proteolysis could not be conserved in other species suggests the presence of other degradation pathways that would result in a distinct timing of kid proteolysis and underlines the possibility of different roles of this protein in different species. Indeed, a recent report has described a distinct mechanism for human Kid degradation that involves the SIAH-1 ubiquitin ligase (14). This pathway seems to be specific for human Kid protein, since SIAH-1 is not required for Xkid degradation (our unpublished results). It is possible that different species have evolved two different strategies to induce Kid proteolysis: the first one mediated by APC and the second one mediated by the SIAH-1 ubiquitin ligase.
In conclusion, we have described a new target signal that, despite being only partially conserved in other species, fulfills all of the main characteristic features of a degradation motif and that is essential for the Xkid protein to be correctly degraded during the cell cycle. Due to the fact that Xkid amino acid sequence contains five potential D-box sequences and that it binds Cdh1 and Cdc20 in vitro, it was assumed that its degradation was mediated by a D-box (27); however, surprisingly, we clearly demonstrate here that this is not the case. On the basis of these results, a detailed study will be required to establish the degradation signal that targets the proteolysis of every new APC substrate. It is likely that the number of new degradation signals will be enlarged by future studies and will reveal the presence of a complex association network of APC/Cdc20 and APC/Cdh1 with their different substrates.
| ACKNOWLEDGMENTS |
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This work was supported by the Ligue Nationale Contre le Cancer (Equipe Labelisée). A.C. is a postdoctoral fellow supported by the Ligue Nationale Contre le Cancer.
| FOOTNOTES |
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