B Subunit with Histone Deacetylase 1
School of Life Sciences, Division of Gene Expression and Regulation, University of Dundee,1 Biomedical Research Centre, Ninewells Hospital, Dundee, Scotland, United Kingdom2
Received 24 February 2003/ Accepted 10 April 2003
| ABSTRACT |
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B transcription factor families are important, multifunctional regulators of the cellular response to stress. Here we have investigated the regulatory mechanisms controlling p53-dependent cell cycle arrest and cross talk with NF-
B. Upon induction of p53 in H1299 or U-2 OS cells, we observed specific repression of cyclin D1 promoter activity, correlating with a decrease in cyclin D1 protein and mRNA levels. This repression was dependent on the proximal NF-
B binding site of the cyclin D1 promoter, which has been shown to bind the p52 NF-
B subunit. p53 inhibited the expression of Bcl-3 protein, a member of the I
B family that functions as a transcriptional coactivator for p52 NF-
B and also reduced p52/Bcl-3 complex levels. Concomitant with this, p53 induced a significant increase in the association of p52 and histone deacetylase 1 (HDAC1). Importantly, p53-mediated suppression of the cyclin D1 promoter was reversed by coexpression of Bcl-3 and inhibition of p52 or deacetylase activity. p53 therefore induces a transcriptional switch in which p52/Bcl-3 activator complexes are replaced by p52/HDAC1 repressor complexes, resulting in active repression of cyclin D1 transcription. These results reveal a unique mechanism by which p53 regulates NF-
B function and cell cycle progression. | INTRODUCTION |
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In resting cells, p53 has a short half-life of only a few minutes as a result of the Mdm2 ubiquitin ligase, which binds directly to p53 and mediates its proteolytic degradation (25, 55). Upon stimulation, p53 rapidly becomes stabilized by different and stimulus-specific posttranslation modifications, which disrupt its interaction with Mdm2, thus extending its half-life to several hours and allowing it to become transcriptionally active (25, 55). Among the p53 downstream target genes are mdm2 itself (which results in a negative feedback loop restricting the duration of the p53 response), proapoptotic genes such as bax and PIG3, and cell cycle inhibitory proteins such as the cyclin-dependent kinase inhibitor p21 (WAF1/CIP1) (25, 55). p53 is capable both of activating and repressing transcription (62). These important antitumor effects of p53 have resulted in its being a primary target for alteration during cancer development, being mutated in approximately 50% of human tumors (22).
In addition to posttranslational modification, another potentially important determinant of p53 action is its ability to interact with or modulate the function of other heterologous transcriptional regulators in the cell, although this aspect of its regulation is not as well investigated. Recently, it has become apparent that a complex relationship exists between p53 and members of the NF-
B and I
B families of proteins and that the functions of these proteins are integrated within the cell through a variety of mechanisms. Although most typically associated with activation by inflammatory cytokines, NF-
B subunits are also activated by DNA damage and other forms of stress more commonly associated with p53 induction (41). As with p53, the activation of NF-
B can affect the cell in a variety of ways. Under some circumstances, NF-
B function can apparently antagonize p53, being proproliferative and antiapoptotic (44). Consequently, aberrantly active forms of NF-
B have been described in human tumors and transformed cell lines (6, 47). Under other circumstances, however, NF-
B activation is associated with cellular differentiation and proapoptotic functions (7, 44, 49).
Investigation of the integration of p53 and NF-
B function has largely centered on the function of the RelA(p65) subunit. Significantly, RelA was recently shown under some circumstances to be required for p53-dependent apoptosis (49). Moreover, activation of p53 was shown to result in the induction of a p50/RelA DNA-binding complex (49). In contrast, a recent report failed to note this effect but indicated that NF-
B can suppress p53 activity by inducing Mdm2 protein levels (53). These two reports also contradict each other concerning whether NF-
B is required for p53-mediated apoptosis or acts to prevent it. In addition, our laboratory, and others, had previously observed that p53 and RelA can mutually suppress, or modulate, each other's transcriptional activity in a manner consistent with competition for limiting amounts of the p300 coactivator protein (46, 57, 59). Furthermore, other mechanisms of cross talk have also been described. These include reports that the promoter of the p53 gene itself has been found to contain a functional NF-
B binding site (24, 30, 42), that p53 can inhibit NF-
B activation (29, 51), that Mdm2 expression can stimulate transcription from the relA gene promoter (19), and that p53 can bind directly to I
B
(10).
In this report, we have further investigated the integration of p53 and NF-
B function. We observed a p53-induced, NF-
B- dependent repression of the cyclin D1 promoter resulting from down regulation of Bcl-3 protein levels and increased association of p52 with histone deacetylase 1 (HDAC1). These results demonstrate that p53/NF-
B cross talk is not confined to the RelA subunit and effects on apoptosis. Instead, by influencing the activity of other family members, p53's effects on the cell cycle can in part be mediated by regulating the activity of distinct NF-
B subunits.
| MATERIALS AND METHODS |
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B activity was induced by tumor necrosis factor alpha (TNF-
; Sigma) at a final concentration of 10 ng/ml. Inhibition of HDAC activity by trichostatin A (TSA) (Upstate Biotechnology) was performed by incubating cells with 100 ng of TSA per ml for 16 h before harvesting. Flow cytometric analysis of cell cycle distribution. Adherent and detached cells were harvested, pooled, washed once in phosphate-buffered saline (PBS), and fixed in ice-cold 70% (vol/vol) ethanol in distilled water. Cells were then washed twice in PBS (plus 1% [wt/vol] bovine serum albumin) and resuspended in PBS containing 0.1% (vol/vol) Triton X-100, 50 µg of propidium iodide per ml and 50 µg of RNase A per ml. After incubation at room temperature for 20 min, cells were analyzed for cell cycle distribution with a FACS Calibur flow cytometer (fluorescence-activated cell sorter; FACS) and Cell Quest software (Becton Dickinson). Red fluorescence (585 ± 42 nm) was evaluated on a linear scale, and pulse width analysis was used to exclude cell doublets and aggregates from the analysis. Cells with a DNA content between 2N and 4N were designated as being in the G1, S, or G2/M phase of the cell cycle. The number of cells in each compartment of the cell cycle was expressed as a percentage of the total number of cells present.
Transient transfections and protein extracts. Calcium phosphate transient transfections were performed essentially as described previously (59). All transfections contained appropriate levels of Rous sarcoma virus (RSV) control plasmid such that each dish received the same amount of DNA. Nuclear extracts were prepared as described previously (15). For whole-protein lysates, cells were washed once with PBS and resuspended in buffer A (20 mM HEPES [pH 7.6], 400 mM NaCl, 1 mM EDTA, 25% glycerol, 0.1% NP-40, 1 mM dithiothreitol). Cells were lysed by using 10 strokes of a 26-gauge syringe. Cells were incubated on ice for 30 min before centrifugation at maximum speed in an Eppendorf 5417R centrifuge for 15 min. All solutions used in protein extractions contained protease and phosphatase inhibitors, phenylmethylsulfonyl fluoride (1 mM), leupeptin (1 µg/µl), aprotinin (1 µg/µl), pepstatin A (1 µg/µl), NaF (5 mM), and Na3VO4 (500 µM).
Immunoblotting and antibodies. Following sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), resolved proteins were electroblotted onto a polyvinylidene difluoride membrane (Millipore). The membrane was blocked in 10% blocking buffer (Tris-buffered saline [TBS]-0.1% Tween 20, 10% milk) (TTBS) for 30 min. The membrane was then probed with the primary antibody in 5% TTBS-milk overnight at 4°C, followed by three 10-min washes with TTBS. Incubation with the secondary antibody was performed for 1 h at room temperature followed by three 10-min washes with TTBS. Detection of proteins was achieved by using enhanced chemiluminescence (Amersham).
Antibodies used in this report were anti-phospho-Ser-15 p53 (New England Biolabs), anti-p21 (Santa Cruz), anti-p52 monoclonal (Upstate Biotechnology), anti-p50 NF-
B (Upstate Biotechnology), anti-Bcl-3 (Santa Cruz), anti-HDAC1 (CN Biosciences), anti-cyclin A (Santa Cruz), anti-cyclin B1 (Santa Cruz), anti-cyclin E (Pharmingen), anti-ß-actin (Sigma), and anti-cyclin D1 (Pharmingen). The anti-cRel, anti-RelB, anti-RelA, and anti-p100/p52 polyclonal antibodies were provided by Nancy Rice, National Cancer Institute, Frederick, Md. The anti-p53 DO1 antibody was provided by Sonia Lain and David Lane (University of Dundee).
Plasmids.
The RSV RelA (p65), p50, and c-Rel expression plasmids have been previously described (45). RSV RelB and Bcl-3 were obtained from Gary J. Nabel's laboratory (National Institutes of Health, Bethesda, Md.). The p52 expression plasmid (amino acids 1 to 405) and C-terminal p100 (amino acids 450 to 946) used in this report were generated by PCR by using the Pwo polymerase (Roche) and were subcloned into the same RSV expression plasmid backbone. Cyclin D1 and cyclin E promoter luciferase plasmids were obtained from Richard Pestell (Albert Einstein Cancer Center, Bronx, N.Y.). The 3x
B conA luciferase reporter plasmid was obtained from Ron Hay (University of St. Andrews, St. Andrews, Fife, Scotland, United Kingdom). The p21 promoter luciferase plasmid was obtained from David Lane (University of Dundee). The HDAC1 expression plasmid was obtained from Tony Kouzarides (University of Cambridge, Cambridge, United Kingdom) and has been described previously (3).
Reporter gene assays.
Cells were transfected with indicated luciferase reporter plasmids and 24 h posttransfection were treated for the indicated times with IPTG or TNF-
. Lysates were prepared by using passive lysis buffer (Promega), and luciferase assays were performed according to the manufacturer's instructions (Promega). All experiments were performed a minimum of three times before calculating means and standard deviations as shown in figures.
RNA extraction and RT-PCR. Total RNA was extracted from H1299w/tp53 cells by using the RNeasy kit (Qiagen) following the manufacturer's instructions. Five hundred to 10 ng of RNA was used to perform reverse transcriptase PCR (RT-PCR) by using the Promega Access RT-PCR system. PCR products were resolved by agarose gel electrophoresis and visualized by staining with ethidium bromide. Primers used for Bcl-3, cyclin D1, and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were as follows: Bcl-3 (primer set P1), sense, 5'-TCAAGAACTGCCACAACGACAC-3', and antisense, 5'-CTGGGGTCAGAGTCCTGGGAG-3'; Bcl-3 (primer set P2), sense, 5'-GCAGATCTTGGACTCATGAGG-3', and antisense, same as for primer set P1; cyclin D1, sense, 5'-GACCATCCCCCTGACGGCCGAG-3', and antisense, 5'-CCGCACGTCGGTGGGTGTGC-3'; GAPDH, sense, 5'-GGTCGTATTGGGCGCCTGGTCACC-3', and antisense, 5'-CACACCCATGACGAACATGGGGGC-3'.
| RESULTS |
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B family are also important regulators of cyclin D1 expression, with three putative
B elements being found in the promoter (21, 28, 61). Deletion to -66 removed two of these sites, but one still remained in the -66 to +137 construct (Fig. 3A). Given the previously described cross talk between p53 and NF-
B, we next investigated whether repression of cyclin D1 promoter activity might result from modulation of NF-
B. Mutation of the proximal
B element within the -66 to +137 cyclin D1 reporter plasmid abolished p53-mediated repression and actually resulted in a slight stimulation of activity (Fig. 3C). This suggested that NF-
B activity is actually required for p53-mediated repression. Since p53 induction also results in an increase in p21 protein levels (Fig. 1A), which has been shown to have numerous effects on transcription (43), we next investigated whether it might account for these effects. Cotransfection of p21 with the cyclin D1 (-1745 to +137) reporter plasmid had no significant effect, however (Fig. 3D). Furthermore, consistent with the specificity seen in Fig. 2, induction of p53 had no effect on a cyclin E promoter reporter plasmid after 16 h of IPTG treatment (Fig. 3E).
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B2 (p52/p100) NF-
B subunit.
Cyclin D1 promoter activity has been shown to be regulated by both p50/RelA and also p52/Bcl-3 NF-
B complexes (21, 28, 61). Bcl-3 is highly homologous to members of the I
B family, which typically bind and inhibit NF-
B subunits (44). Unlike I
B proteins, Bcl-3 is found to be constitutively present in the nucleus and is a transcriptional coactivator which can interact directly with homodimers of the p50 and p52 NF-
B subunits (8, 17, 18, 39). In H1299 cells, we did not observe any effect on cyclin D1 promoter activity, either basal or p53 repressed, upon cotransfection of a dominant-negative I
B
expression plasmid, which would be expected to more specifically target a p50/RelA complex (data not shown). Furthermore, H1299 cells lacked constitutively high levels of p50/RelA NF-
B activity, and induction of p53 did not result in any apparent significant change in NF-
B DNA binding to either the immunoglobulin/human immunodeficiency virus or H2 or proximal cyclin D1
B elements (data not shown).
These observations suggested that other NF-
B subunits might mediate the effects of p53 through the proximal cyclin D1
B element. We therefore investigated any possible involvement that p52 and Bcl-3 might have on p53-mediated repression. Similar to the results of Westerheide et al., coexpression of either a p52 or Bcl-3 expression plasmid, alone or in combination, resulted in stimulation of the cyclin D1 promoter (Fig. 4B) (61). Similar results were also obtained with the truncated -66 to +137 cyclin D1 promoter, and cooperative stimulation of transcription between p52 and Bcl-3 was virtually abolished by mutation of the proximal
B element (Fig. 4B). Surprisingly, significant activation by Bcl-3 alone could still be seen, suggesting that it might be able to target other factors binding this promoter region (Fig. 4B). Similarly, some residual activation by p52 alone could still be observed, although this was not affected by the CT-p100 repressor (see below), thus suggesting a nonspecific effect (Fig. 4B).
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B subunits, p50 and p52 are derived by proteolytic processing of their larger precursor proteins, p105 and p100, respectively. The C-terminal ankyrin repeat domains of both p105 and p100, which are lost in p50 and p52, function as I
B-like NF-
B inhibitors (32, 50). Furthermore, expression of the C terminus of p105 has been previously shown to be able to function as a specific inhibitor of the p50 NF-
B subunit when expressed alone (32). As expected, coexpression of CT-p100 efficiently repressed p52-mediated induction of the cyclin D1 promoter (Fig. 4B) but did not affect TNF-mediated activation of an artificial NF-
B reporter containing multiple
B elements (Fig. 4C). Analysis of nuclear protein extracts from comparably transfected cells indicated that CT-p100 did not inhibit p52 expression levels (Fig. 4B). In contrast, dominant-negative I
B
was an efficient repressor of TNF-activated NF-
B, which could be expected to consist predominantly of p50/RelA complexes (Fig. 4C). These results suggested that CT-p100 is a repressor of p52 homodimers and does not inhibit the activity of p50/RelA. It cannot be ruled out that there might be effects on other members of the NF-
B family, although we find that p50 homodimers, which would be the other subunit most likely to be inhibited by CT-p100, do not regulate the cyclin D1 promoter (data not shown and reference 61).
Curiously, when expressed alone, CT-p100 did not strongly inhibit the cyclin D1 promoter (Fig. 4B). This observation is consistent with the absence of a strong effect in unstimulated H1299 cells of mutating the proximal cyclin D1 promoter
B element (Fig. 3B), suggesting either a balance between activating and inhibitory p52 complexes or that additional factors can compensate for the removal of p52. Significantly, however, expression of CT-p100 completely reversed p53-mediated repression of the cyclin D1 promoter (Fig. 5A) in a manner similar to the earlier mutation of the proximal
B element (Fig. 3C). To confirm that the effect of p53 did result from modulation of a p52/Bcl-3 complex, coexpression of Bcl-3 also resulted in complete reversal of p53-mediated repression (Fig. 5A). Interestingly, p52, despite being able to activate the cyclin D1 promoter in unstimulated cells, was unable to reverse inhibition by p53 (Fig. 5B). Taken together, these results suggested that p53-mediated repression of the cyclin D1 promoter results from its ability to modulate the activity of a p52/Bcl-3 complex.
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B element, despite being able to reverse p53-mediated repression, had minimal effects on cyclin D1 promoter activity in unstimulated cells (Fig. 3B and 4B). These results were consistent with p52 having an active inhibitory role following p53 induction and Bcl-3 suppression. If repression of the cyclin D1 promoter and the inability of p52 to reverse this (Fig. 5B) were merely the result of removing an activator (Bcl-3), then it would not be expected that p53-mediated inhibition would be abolished by mutation of the proximal
B element or the cotransfection of CT-p100. Rather, these would mimic or enhance the p53 effect. Our results could be explained, therefore, if p52 homodimers were capable of interacting with HDACs or other transcriptional repressor complexes in H1299 cells. Interestingly, it has recently been shown that both p50 homodimers and RelA(p65) can interact with HDAC activity in unstimulated cells (4, 63). If this were also the case for p52, in the absence of p53, a balance might exist between activating p52/Bcl-3 complexes and inhibitory p52/HDAC complexes, both working through the same DNA elements. Mutation of the proximal NF-
B binding site or cotransfection of CT-p100 would have the effect of canceling out the activities of both complexes, resulting in little change. p53-mediated suppression of Bcl-3 would then tip the balance in favor of the p52/HDAC complexes, resulting in active transcriptional repression consistent with the requirement for the proximal
B element and reversal of repression by CT-p100.
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B element again strongly reduced this repression, consistent with effects mediated through p52 binding to this site (Fig. 7D). These results indicated therefore that induction of p53 results in loss of activating p52/Bcl-3 complexes (through inhibition of Bcl-3 levels) and an increase in inhibitory p52/HDAC1 complexes. This observation explains that requirement of the proximal
B element for p53-mediated repression and the reversal of this repression by the CT-p100 inhibitor. Repression of the cyclin D1 promoter and Bcl-3 protein requires p53 phosphorylation on serine 15. We next investigated whether Bcl-3 repression was seen in other cell lines expressing p53. In contrast to the results seen in H1299w/tp53 cells, tetracycline-regulated p53 in a Saos-2 stable cell line did not result in down regulation of cyclin D1 or Bcl-3 protein levels (Fig. 8A). We had earlier observed that H1299-cell p53 was phosphorylated at serine 15 (Fig. 1A). In contrast, Saos-2-cell p53 was not detectably phosphorylated at this residue (Fig. 8B). While there are many other possible mechanisms that could account for the cell type specificity seen for Bcl-3 and cyclin D1 repression, this suggested that serine 15 phosphorylation might account, at least in part, for some of these differences. This result also suggests that other mechanisms can compensate for lack of serine 15 phosphorylation since p53 still induces p21 and apoptosis in Saos-2 cells.
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UV light stimulation of U-2 OS cells also results in repression of cyclin D1, loss of Bcl-3, and an increase in p52/HDAC1 complexes.
These results had all been obtained in p53-null cell lines into which p53 had been reintroduced under the control of an inducible promoter. While this allowed us to assess the direct contribution of p53 to these effects, it was important to demonstrate that similar regulation of p52 and the cyclin D1 promoter occurred in a cell line in which endogenous p53 was induced by an activating stimulus. We therefore investigated the effect of stimulating the human osteosarcoma U-2 OS cell line, which contains wild-type p53, with UV light. It was not possible to demonstrate a cell cycle effect of UV stimulation in these cells, since they underwent apoptosis before any significant accumulation in the G1 phase could be observed (data not shown). p53's effects on the cell cycle occur concomitantly with effects of apoptosis, however (discussed in reference 56), and these cells still provided a suitable model system to investigate the effects of endogenous p53 activation on p52 and cyclin D1 promoter activity. UV stimulation resulted in strong repression of cyclin D1 protein levels (Fig. 9A). Furthermore, UV also mimicked p53 induction in H1299w/tp53 cells by inhibiting the cyclin D1 promoter in a manner dependent upon the proximal
B element (Fig. 9B). As expected, UV stimulation induced both p53 protein and its phosphorylation on serine 15 (Fig. 9C). Significantly, as in the H1299w/tp53 cells, Bcl-3 protein levels were also suppressed (Fig. 9C), resulting in a significant decrease in p52/Bcl-3 complexes (Fig. 9D). As also seen previously in the H1299w/tp53 cells, Bcl-3 expression has a strong stimulatory effect on the cyclin D1 promoter and reversed UV-induced repression (Fig. 9E). A similar effect was also seen on endogenous cyclin D1 protein levels, where Bcl-3 expression partially recovered the loss of protein seen upon UV treatment (Fig. 9F). Since the transfection efficiency of these cells is typically less than 50% (data not shown), a more significant recovery would be unlikely to be observed by using these techniques. Finally, and also consistent with the effects seen in H1299w/tp53 cells, a significant increase in the association of p52 with HDAC1 followed UV treatment (Fig. 9G). Therefore, p52 undergoes the same transcriptional switch from activator to repressor upon induction of endogenous p53 in response to UV light.
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| DISCUSSION |
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B family. The precise mechanism controlling down regulation of Bcl-3 will require further investigation, however.
Inhibition of the cyclin D1 promoter by p53 through the proximal
B element does not merely result from the removal of an activator protein (Bcl-3). Repression by p53 required the proximal
B element (Fig. 3C) and was inhibited by the C terminus of p100 (CT-p100) (Fig. 5A). If p53 inhibited cyclin D1 through a passive mechanism, that is, by just removing an activator complex, then these experiments would have been expected to mimic the effect of p53 induction. Instead, these observations all indicated that p53 induced active repression of the cyclin D1 promoter. Consistent with this, we found that p52 can associate with the transcriptional repressor HDAC1 and that this interaction increases significantly upon p53 induction (Fig. 7A). This effect is also observed in U-2 OS cells upon UV stimulation (Fig. 9G), demonstrating that this is not an effect limited to H1299 cells and artificial induction of p53 protein. An active role for this p52/HDAC1 complex is indicated by the reversal of p53-mediated inhibition of the cyclin D1 promoter by the deacetylase inhibitor TSA (Fig. 7B). The p52/HDAC interaction can be observed in untreated cells (Fig. 7A and 9G), and mutation of the proximal cyclin D1
B element or coexpression of CT-p100 has a minimal effect on promoter activity in the absence of p53 (Fig. 3B and Fig. 4B). We propose, therefore, that in untreated H1299 cells, there is a balance between activator p52/Bcl-3 complexes and repressor p52/HDAC complexes. p53 induction results in a transcriptional switch, whereby loss of Bcl-3 and an increase in p52/HDAC1 complexes results in repression of the cyclin D1 promoter (Fig. 10). We consider it likely, however, that in different cell types, the balance between repressor and activator p52 complexes will vary, with p52/Bcl-3 complexes dominating in many instances, resulting in positive regulation of cyclin D1 regulation.
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B homodimers are less well known than those for the classical p50/RelA NF-
B heterodimer, it is likely that they regulate many other promoters. In addition, Bcl-3 has been found to function as a coactivator for the AP-1 and RXR transcription factors (36, 37). By repressing Bcl-3 levels and increasing the relative levels of p52/HDAC1 complexes, p53 is likely to affect the expression of a number of other genes in addition to cyclin D1, and this mechanism could potentially therefore represent an important component of the p53 tumor suppressor pathway.
| ACKNOWLEDGMENTS |
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N.D.P. is funded by a Royal Society University Fellowship, and S.R. is funded by a grant from Cancer Research UK.
| FOOTNOTES |
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