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Molecular and Cellular Biology, October 2003, p. 7134-7142, Vol. 23, No. 20
0270-7306/03/$08.00+0 DOI: 10.1128/MCB.23.20.7134-7142.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Biological Sciences, Columbia University, New York, New York 10027
Received 9 April 2003/ Returned for modification 9 May 2003/ Accepted 7 July 2003
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The different PAK family members have different tissue specific expression patterns. While PAK4 is expressed ubiquitously in all tissues (1, 23a), PAK5 and PAK6 have restricted tissue-specific expression patterns (5, 16, 22, 29). PAK6 was identified based on its expression in the prostate and testes, but later it was also shown to be highly expressed in the brain (16, 29). Likewise, PAK5 is also highly expressed in the brain (5, 22). The expression of all of these proteins in the brain is significant because cytoskeletal changes triggered by Rho GTPases are thought to have important functions in the developing nervous system. For example, filopodia and lamellipodia play key roles in the guidance of neuronal growth cones and consequently play important roles in the outgrowth of neurons (17, 21). Consistent with this, Rho GTPases have been implicated in all aspects of neuronal development, including growth cone guidance and the extension of axons (17). Likewise, the PAK kinase have also been shown to have important roles in neuronal development in Drosophila melanogaster (11, 12, 19, 24) but less is known about its functions in mammals. In neuroblastoma cell lines, PAK5 was shown to promote the outgrowth of neurons, whereas dominant-negative PAK5 inhibited neurite outgrowth, suggesting an important role for mammalian PAK5 in neuronal development (5).
Although the mammalian PAKs have been shown to have important functions in cell lines, relatively little is known about their biological and developmental functions. Here we report the generation of PAK5 knockout mice, as well as expression pattern analysis of PAK5, to determine what functions it may have during development. We have found that mice lacking PAK5 develop normally and are fertile. Interestingly, this phenotype is completely different from PAK4 knockouts, which are embryonic lethal and have defects in the nervous system (23a). Our results suggest the possibility of functional redundancy between PAK5 and other brain enriched PAK kinases, such as PAK6.
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Northern blot. A 1-kb fragment of the mouse or human PAK5 cDNA corresponding to the regulatory domain was radioactive labeled by using random primer labeling kit (Stratagene). The fragment was then used, according to the protocol provided by the manufacturer, to probe a mouse RNA master blot or a human multiple tissue expression array (Clontech).
Total RNA from different tissues of wild-type and PAK5-null mice was prepared by using RNAzol B (Tel-Test, Inc.). The isolated total RNA was separated and transferred to a positively charged nylon membrane (Amersham Bioscience) as described elsewhere (8). A 500 PAK6 cDNA fragment from the regulatory domain was radioactive labeled by using random primer labeling kit (Stratagene) and used to probe the membrane. The hybridization was performed in ExpressHyb solution from Clontech according to the manufacturer's protocol, and the membrane was exposed to Kodak film at -80°C for 5 days. The same membrane was probed with radiolabeled
-actin cDNA probe as loading control.
In situ hybridization. A 1-kb mouse PAK5 cDNA fragment corresponding to the regulatory domain of PAK5 was subcloned into TOPO-PCR-4 vector (Invitrogen) between T3 and T7 promoters. Sense and antisense RNA probes were generated by using an in vitro transcription kit (Promega) and a digoxigenin (DIG) RNA labeling kit from Roche.
An 8-week-old female mouse (C57BL/6) was fixed by perfusion with 4% paraformaldehyde plus 0.25% gluteraldehyde in phosphate-buffered saline (PBS). The mouse was sacrificed, and the brain was removed and fixed in 4% paraformaldehyde overnight. The brain was then embedded in paraffin and cut into 10-µm-thick sections. The sections were dried at 60°C for 30 min, dewaxed by using xylene and ethanol, and then treated with proteinase K for 30 min. The hybridization was performed at 42°C overnight in hybridization buffer (50% formamide, 5x SSC [1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate], 10% dextran sulfate, 2.25x SSPE [1x SSPE is 0.18 M NaCl, 10 mM NaH2PO4, and 1 mM EDTA; pH 7.7], 2.5x Denhardt solution, 100 µg of herring sperm DNA/ml, 5 mM dithiothreitol, 40 U of RNase inhibitor/ml), followed by three 30-min washes (5x SSC, 2x SSC, and 0.1x SSC) at 55°C. The DIG was detected according to the protocol from the DIG detection kit (Roche).
Construction of the targeting vector and generation of PAK5 knockout mice. A radioactive-labeled 1-kb fragment of mouse PAK5 cDNA corresponding to the regulatory domain (exon 1, exon 2, and part of exon 3) was used to screen a murine S129 genomic library (Genome Systems). Four positive bacterial artificial chromosome (BAC) clones were identified, two of them were partially mapped by restriction enzymes and partially sequenced. One of the BAC clones was 58 kb and contained only exon1 and part of the surrounding sequence. A second clone was 75 kb and contained the rest of the exons (i.e., exons 2 to 8). The total size of the PAK5 locus is 105 kb.
Sequencing of the BAC clones revealed that exon 3 contained several conserved amino acids, including the lysine within subdomain II, known to be important for the kinase activity of serine/threonine kinases, including the other PAKs (1, 5, 10). Therefore, a targeting vector was generated in which exon 3 is deleted, as follows. A 6.5-kb EcoRI fragment upstream of exon 3 and a 4.5-kb ClaI-BglII fragment downstream of exon 3 were sequentially subcloned into pPNT targeting vector (27) flanking the PGK-Neo gene. The PGK-Neo gene contains stop codons in all three reading frames. The resulting targeting vector has the PGK-Neo gene for positive selection and the PGK-thymidine kinase (TK) gene for negative selection. Homologus recombination between mouse genomic DNA and targeting vector results in the replacement of a 13-kb fragment, including exon 3 and surrounding intron sequence, by the 1.8-kb neomycin gene.
The targeting vector was linearized by cutting at a unique NotI site and electroporated into E14 embryonic stem (ES) cells. A total of 200 clones resistant to both G418 (400 µg/ml) and ganciclovir (2 µM) were picked 7 days after transfection and expanded. Genomic DNA was isolated from the clones, and the genotypes of the clones were assessed by Southern blotting. Three PAK5 heterozygous (+/-) ES clones were identified and expanded.
The PAK5+/- ES clones were injected into C57BL/6 blastocysts. Seven chimeric male mice with >50% ES cell contribution to the coat color were bred with C57BL/6 females. Both Southern blotting and competitive PCR on tail DNA were used to genotype the F1 generation. Heterozygous male and female pups were intercrossed to generate the homozygous mice.
Southern blots. Genomic DNA was isolated from the ES clones or tails by treating the cells with proteinase K in ETS buffer (0.1 M Tris-HCl, 0.2 M NaCl, 0.5 mM EDTA, 0.4% sodium dodecyl sulfate [SDS]), followed by isopropanol precipitation. The purified DNA was digested with EcoRI. The resulting bands were separated on 0.8% agarose gel and transferred to a positively charged nylon membrane (Amersham Bioscience). Two probes were used, as shown in Fig. 1. P1 is a 700-bp BamHI-BglII fragment 3' to the homologous region, which is used to determine the genotype of ES clones and pups from intercross. P2 is a 500-bp KpnI-BglII fragment within exon 3, which was used to confirm the deletion of exon 3 in homozygous mice. To generate the probes, the DNA fragments were purified by gel purification (Qiagen) and radioactively labeled by using a random primer labeling kit (Stratagene). Hybridization was performed in FBI buffer (10% PEG 8000, 1.5x SSPE, 7% SDS) at 65°C in a rotation oven, followed by three washes of 20 min each (3x SSC-0.1% SDS, 1x SSC-0.1% SDS, and 0.1x SSC-0.1% SDS) at the same temperature. The membrane was then exposed to X-ray film (Kodak) at -80°C overnight.
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FIG. 1. Generation of PAK5 knockout mice. (A) Generation of the targeting vector. A partial restriction map of the wild-type allele of PAK5 (exons 2, 3, 4, and 5) is shown. The lengths of introns 2, 3, and 4 are indicated above. To disrupt exon 3 in the mouse genome, a 6.5-kb EcoRI fragment, including exon 2, and a 4.5-kb ClaI-BglII fragment, including exons 4 and 5, were sequentially subcloned into pPNT targeting vector (27) flanking the PGK-Neo gene. The Neo gene contains a stop codon in all three reading frames. A PGK-TK gene was included in the targeting vector for negative selection. Homologous recombination between genomic DNA and the targeting vector results in the replacement of a 13-kb genomic fragment, including exon 3 by a 1.8-kb Neo gene. (B) Southern blot analysis of PAK5+/- ES cells. Southern blot analysis was carried out on EcoRI-digested genomic DNA from G418-resistant ES clones with probe P1, a 700-bp BamHI-BglII fragment 3' of the homologous region (see panel A). The wild-type (WT) allele results in a 12-kb band and the knockout (KO) allele results in a 7.7-kb band. (C) PCR Genotyping of PAK5 knockout mice. Competitive PCR was done on genomic tail DNA with three primers: one common 3' primer and 5' PAK5- and Neo-specific primers. The wild-type (WT) allele results in a 390-bp band, and the knockout (KO) allele results in a 290-bp band. (D) Southern blot analysis of PAK5+/+, PAK5+/-, and PAK5-/- mice. Southern blot analysis was carried out on EcoRI-digested genomic DNA. Blots were probed with probe P1 (top) or probe P2 (bottom) (see panel A). For P1, the wild-type (WT) allele results in a 12-kb band, and the knockout (KO) allele results in a 7.7-kb band. P2 is a 500-bp sequence within exon 3. A 12-kb band is seen in the wild type. There is no band in the knockout, indicating that exon 3 is deleted.
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Antibodies.
Rabbit polyclonal anti-peptide PAK5 antibody was generated by Covance, Inc. The peptide LDLYYKSSHAAKQN, corresponding to part of the PAK5 regulatory domain, was used as the antigen. The antibody was affinity purified. The PAK1 antibody was from Santa Cruz Biochemicals, the Ste20 antibody was from Upstate Biotechnology, the PAK4 antibody was from Pharmingen, and the anti-
-actin antibody was from Sigma.
Western blots. Tissue extracts were made from 8-week-old mice by using a homogenizer in tissue lysis buffer (1% SDS, 1 mM dithiothreitol, 1.0 mM sodium orthovanadate, 10 mM Tris-HCl [pH 7.5]). The resulting lysate was centrifuged at 13,000 rpm at 4°C for 10 min. The concentration of the protein was determined by protein assay (Bio-Rad). Equal amounts of protein were subjected to SDS-polyacrylamide gel electrophoresis on an 8% gel and then transferred to a polyvinylidene difluoride membrane. The membrane was blocked by 4% bovine serum albumin in PBS containing 0.2% Tween 20. The desired antibody was diluted as recommended in blocking buffer. The membrane was incubated in the antibody solution at 4°C overnight, followed by three washes in PBS plus 0.2% Tween 20 (once for 15 min and twice for 5 min). The membrane was then incubated with a horseradish peroxidase-linked second antibody at room temperature for 1 h, followed by three washes as described above. The bands were detected by using an enhanced chemiluminescence detection system (Amersham Bioscience).
Histology. Organs were isolated from 8-week-old wild-type and knockout littermates. The tissues were fixed in 10% buffered formalin and then embedded in paraffin and sectioned. The sections were stained with hematoxylin and eosin (H&E) and analyzed by microscopy.
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TABLE 1. Genotype analysis of progeny resulting from crosses of PAK5+/- mice
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FIG. 2. Expression patterns of PAK5. (A) Northern blot analysis of PAK5. Each Northern blot was probed with a 1-kb radiolabeled mouse or human PAK5 cDNA probe corresponding to the regulatory domain. Equal amounts of poly(A)+ RNA were dotted on the membrane as follows. Top panel (mouse RNA master blot): A1, brain; A2, eye; A3, liver; A4, lung; A5, kidney; B1, heart; B2, skeletal muscle; B3, smooth muscle; C1, pancreas; C2, thyroid; C3, thymus; C4, submaxillary gland; C5, spleen; D1, testis; D2, ovary; D3, prostate; D4, epididymis; D5, uterus; E1, embryo (7 days); E2, embryo (11 days); E3, embryo (15 days); E4, embryo (17 days). Bottom panel (human multiple tissue expression array): A1, whole brain; B1, cerebral cortex; C1, frontal lobe; D1, parietal lobe; E1, occipital lobe; F1, temporal lobe; G1, paracentral gyrus of cerebral cortex; H1, pons; A2, cerebellum (left); B2, cerebellum (right); C2, corpus callosum; D2, amygdala; E2, caudate nucleus; F2, hippocampus; G2, medulla oblongata; H2, putamen; B3, nucleus accumbens; C3, thalamus; A4, heart; B4, aorta; C4, atrium (left); D4, atrium (right); E4, ventricle (left); F4, ventricle (right); G4, interventricular septum; H4, apex of the heart; A5, esophagus; B5, stomach; C5, duodenum; D5, jejunum; E5, ileum; F5, ileocecum; G5, appendix; H5, ascending colon; A6, transverse colon; B6, descending colon; C6, rectum; A7, kidney; B7, skeleton muscle; C7, spleen; D7, thymus; E7, peripheral blood leukocyte; F7, lymph node; G7, bone morrow; H7, trachea; A8, lung; B8, placenta; C8, bladder; D8, uterus; E8, prostate; F8, testis; G8, ovary; A9, liver; B9, pancreas; C9, adrenal; D9, thyroid gland; E9, salivary gland; F9, mammary gland; A10, leukemia HL-60; B10, HeLa S3; C10, leukemia K-562; D10, leukemia MOLT-4; E10, Burkitt's lymphoma Raji; F10, Burkitt's lymphoma Daudi; G10, colorectal adenocarcinoma (SW480); H10, lung carcinoma, A549; A11, fetal brain; B11, fetal heart; C11, fetal kidney; D11, fetal liver; E11, fetal spleen; F11, fetal thymus; G11, fetal lung. (B) In situ hybridization on sagittal sections of wild-type adult brain. A 1-kb DIG-labeled mouse PAK5 antisense RNA sequence corresponding to the regulatory domain of PAK5 was used as a probe. Mouse PAK5 mRNA is expressed in neurons in all parts of brain. The fold objective is indicated for each panel. In the cerebellum x40 picture, Purkinje cells (P) and granule cells (G) are labeled.
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FIG. 3. Western blot analysis of PAK5 expression. (A) Western analysis of different tissue extracts from 8-week-old wild-type and knockout mice shows that the PAK5 protein is highly expressed in the brain. No PAK5 is found in the brains of the knockouts. The same blot was also probed with an actin antibody. (B) Western analysis of brain extracts from 8-week-old PAK5+/+, PAK5+/-, and PAK5-/- mice shows that PAK1, PAK2, and PAK4 protein are not abnormally upregulated in the absence of PAK5. The same blot was also probed with anti-actin antibody. (C) Northern analysis of total RNA from different tissues of 8-week-old wild-type and knockout mice. The blot was probed with a portion of PAK6 cDNA that is specific to PAK6. The same blot was also probed with actin as control. The results indicate that the PAK6 mRNA level is not changed in the absence of PAK5.
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FIG. 4. H&E-stained coronal brain sections from the caudal diencephalons (I), rostral mesencephalon (II), and rostral cerebellum (III) sections from wild-type (WT) and PAK5 knockout mutant (KO) mice. The results indicate that the disruption of PAK5 does not affect the normal brain structure. All pictures were obtained with a 2x objective lens. All structures of the brain appear normal in the knockouts. The cerebral cortex (C), hippocampus (H), thalamus (T), cerebellum (CM), and spinal cord (S) are indicated.
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FIG. 5. H&E-stained pancreas sections from wild-type (WT) and PAK5 knockout mutant (KO) mice show that the pancreas is normally developed in PAK5-null mice. The top images were obtained with a 10x objective lens; the islets of Langerhans (I) and the pancreatic ducts (D) are shown. The 40x objective pictures on the bottom show the detailed structure of the islets (I) and pancreatic acinar cells (AC) with zymogen granules.
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FIG. 6. Morphology of the eye in wild-type and PAK5 knockout mice as observed in H&E-stained sections of the eye. The cornea (C), lens (L), iris (I), and retina (R) are indicated; no major differences between wild-type (WT) and PAK5 knockout mutant (KO) mice are seen. The images were obtained with a 4x objective lens.
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FIG. 7. Morphology of the adrenal gland in wild-type and PAK5 knockout mice as observed in H&E-stained sections of the adrenal gland. The medulla (M) and the three layers (zona glomerulosa [g], zona fasiculata [f], and zona reticularis [r]) of cortex (C) are labeled. No major difference between wild-type (WT) and PAK5 knockout (KO) mice are seen. The images were obtained with a 4x objective lens.
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Although PAK5 is most highly expressed in the brain, it is also expressed in several other tissues. For example, relatively high levels of PAK5 are found in the pancreas. There are a number of other examples of genes that are expressed in both the brain and the pancreas. One example is NeuroD, which is found in the brain, pancreas, and intestine. Interestingly, mouse knockouts of NeuroD do not have abnormalities in the nervous system but die due to severe diabetes (13). The pancreases of the NeuroD knockout mice have severe abnormalities, including a reduction in the amount of insulin producing beta cells and failure to form mature islets (13). We therefore examined the pancreases of PAK5 knockout mice. However, we found no abnormalities in the pancreas of PAK5 knockout mice, and mice did not die early due to diabetes. Similarly, other tissues in which PAK5 is expressed, such as the testes, prostate, epididymis, and adrenal gland, appeared normal in the PAK5 knockouts (Fig. 5 and data not shown).
It is interesting that the phenotypes of the PAK5 knockout mice were completely different from the knockouts of PAK4, another member of the group B PAK family. Unlike deletion of PAK5, deletion of PAK4 led to lethality prior to E11.5. The most likely cause of lethality in the PAK4 knockout embryos is a heart defect, but they also had severe abnormalities in the brain and nervous system, including defects in neurite outgrowth and differentiation. According to these results, PAK4 seems to be more functionally similar to Drosophila MBT than does PAK5.
Taken together, these results suggest that the different group B PAK family membersPAK4, PAK5, and PAK6may have different but overlapping functions. PAK4, for example, is expressed very early in development. Large amounts of PAK4 can be seen in ES cells (23a), and PAK4 mRNA is found in embryos as early as E7. In contrast, PAK5 expression begins later in development. Very little PAK5 mRNA is detected in ES cells (data not shown) or before E11 (Fig. 2) and, unlike PAK4, PAK5 expression increases as development proceeds (Fig. 2) (23a). Although PAK6 mRNA cannot be detected in ES cells (23a), in the adult brain PAK6 mRNA was shown to be expressed at a significantly higher level than PAK4 (4), and we have also found that PAK5 protein levels are higher than PAK4 in the adult brain (data not shown). We propose that PAK4 is required for early embryonic development, and it is specifically required for the early development of several tissues, including the brain and the heart. In contrast, PAK5 and PAK6 may have functionally redundant roles later in development and in the adult, especially the brain. Functional redundancy between PAK5 and PAK6, however, may ensure that mutations in one gene do not lead to detrimental effects late in development and in adults. The future development of PAK6 and PAK5/PAK6 double knockout mice will be important for determining whether these two kinases have functionally redundant roles and at what stage in development they are important.
This work was supported by NIH grant CA76342 to A.M.
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