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Molecular and Cellular Biology, December 2003, p. 9104-9116, Vol. 23, No. 24
0270-7306/03/$08.00+0 DOI: 10.1128/MCB.23.24.9104-9116.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Giannino Del Sal,1,2,5 Vincenzo Giancotti,3 and Guidalberto Manfioletti1*
Dipartimento di Biochimica, Biofisica e Chimica delle Macromolecole,1 Centre of Excellence in Biocristallography, University of Trieste, 34127 Trieste,5 Laboratorio Nazionale, Consorzio Interuniversitario Biotecnologie, AREA Science Park, 34012 Trieste,2 Dipartimento di Patologia e Medicina Sperimentale e Clinica, University of Udine, 33100 Udine,3 Dipartimento di Biologia Animale, University of Modena e Reggio Emilia, 41100 Modena, Italy4
Received 5 June 2003/ Returned for modification 15 July 2003/ Accepted 19 September 2003
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The first evidence of a direct role played by these factors in tumorigenesis came from transfection of an antisense construct for HMGA2 in normal rat thyroid cells that prevented the neoplastic transformation induced by myeloproliferative sarcoma virus and kirsten murine sarcoma virus (7). More recently, the increased expression of all three HMGA family members was shown to lead to transformation with anchorage-independent cell growth (53, 54), and the overexpression of HMGA1 was also shown to promote tumor progression in human breast epithelial cells (41). Of additional interest, rearrangements of the HMGA2 gene, resulting in the loss of the acidic C-terminal tail, have been frequently detected in benign human tumors of mesenchimal origin (50). Indeed, transgenic mice expressing the truncated HMGA2 protein develop tumors such as lipomas and natural killer lymphomas (1, 3, 6, 18), while mice expressing wild-type HMGA2 develop pituitary adenomas (19).
Despite this evidence, the molecular events and the precise role played by HMGA2 in cell proliferation and tumorigenesis still need to be defined.
HMGA proteins contain about 100 amino acid residues and have three DNA-binding domains which have been named AT hooks because of their ability to interact with the narrow minor groove of AT-rich DNA sequences (42). These nuclear proteins, by binding to DNA and/or to transcription factors, can organize the assembly of nucleoprotein-DNA transcriptional complexes (called enhanceosomes) at the level of enhancers or promoters, resulting in enhancement or repression of transcription. For this reason, they are referred to as architectural transcription factors (42).
Since a critical step in the assembly of enhanceosomes is the ability of HMGA to establish protein-protein interactions with other nuclear factors, we used different approaches to search for new HMGA2-interacting proteins and identified the transcription factor p120E4F. p120E4F is a ubiquitously expressed GLI-Krüppel-related mammalian transcription factor which was first identified as a cellular factor binding to regulatory regions of the adenovirus E4 promoter and which is responsible for E4 regulation of expression in the course of adenoviral infection (21). p120E4F is likely to play a key role in mammalian cell cycle control. In fact, ectopic expression of p120E4F leads to growth suppression, an effect which is mediated by the interaction with the tumor suppressors pRB (15), p14ARF (43), and p53 (46). Moreover, overexpression of p120E4F in NIH 3T3 cells inhibits progression from G1 to S phase by a mechanism that involves the repression of cyclin A (16). This effect is mediated by p120E4F binding to a cyclic AMP-responsive element (CRE) which is required for full transcriptional activation of cyclin A gene (5, 13). The CRE site is also recognized by CREB and ATF family members, raising the question of how the access of these factors to DNA is modulated.
Here we report that HMGA2 associates in vitro and in vivo with p120E4F. Ectopic expression of HMGA2 activates the cyclin A promoter, counteracting the repressing activity of p120E4F exerted through the CRE element. Moreover, we show that HMGA2 is able to induce the expression of the endogenous cyclin A gene. Finally, chromatin immunoprecipitation experiments indicate that association of HMGA2 with the promoter is regulated during the cell cycle, positively correlating with transcriptional activation. The identification of cyclin A, a key factor in cell cycle control, as a functional cellular target for HMGA2 provides for the first time a mechanism that might reveal the oncogenic functions of this factor.
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Plasmids.
Plasmids pGEX HMGA2, pGEX TRX44/63,
and pGEX TRX53/72 expressing the human HMGA2 and two HMGA2 peptides
within the Escherichia coli thioredoxin in fusion with the
glutathione S-transferase (GST) were already described
(36). Plasmids
pcDNA3HA-E4F 2.5K, -E4F 694, -E4F 551, -E4F 427, -E4F
60-358,
-E4F 262, -E4F 162, -E4F
60-783, and -E4F
350-783,
expressing wild-type p120E4F and deletion mutants in frame
with a hemagglutinin (HA) epitope used for in vitro translation and
transfections, were described previously
(46). pcDNA3HA-E4F
153-299 was generated by PCR with pcDNA3HA-E4F 2.5K as a
template and the primers
5'-CTGCTGAATTCGAGCTGGGAGACGGTGAGA-3'
and
5'-CCAATAGTCTAGATCCAGCTCCAGAACCTG-3'.
pGEX E4F
60-358 was obtained by cloning the
sequence coding for the deletion mutant
60-358 into the
EcoRI restriction site of the pGEX-4T1 vector. Plasmids pAR
HMGA2wt, pAR HMGA294, pAR HMGA283, pAR
HMGA2MAD, pAR HMGA273, pAR HMGA254,
and pAR HMGA243, used for the expression of recombinant
proteins used in far-Western experiments, were described previously
(36). The pcDNA3HA-HMGA2
and pcDNA3-HMGA2 plasmids for the expression of wild-type HMGA2 in
transfection experiments were obtained by cloning the HMGA2 open
reading frame into the BamHI and XhoI restriction
sites of the pcDNA3HA vector and the BamHI site of the pcDNA3
vector, respectively.
The CycAwt reporter plasmid was obtained by cloning into the KpnI and HindIII restriction sites of the pGL2Basic vector a 213-bp fragment of the human cyclin A promoter (from bp -165 to +48 relative to the most 3' transcription initiation site), which was generated by PCR with oligonucleotides 5'-CTCCGGTACCAGCCAGTTTGTTTCTC-3' and 5'-TGGCAAGCTTAAGACGCCCAGAGATG-3'. The CycAmut reporter plasmid was obtained by using a splice overlap extension PCR technique with the internal oligonucleotides 5'-TTGACTCGAGTCAAGGCCGCGAGCGCTTT-3' and 5'-CCTTGACTCGAGTCAAGGCGACAGGGTCA-3', in order to mutate the CRE site with the insertion of an XhoI restriction site (underlined).
GST pull-down assays and far-Western blot analysis. Expression and purification of GST fusion proteins for GST pull-down assays were carried out by standard protocols. Proteins were translated in vitro by using a commercial in vitro transcription-translation kit (TNT; Promega), with [35S]methionine (NEN Life Science) according to the manufacturer's instructions. GST pull-down assays were carried out essentially as described previously (36). For far-Western experiments, recombinant HMGA2 proteins were expressed and purified as previously described (33). One microgram of each of the HMGA2 recombinant proteins was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride membrane. Far-Western blotting was then carried out as described previously (36).
Immunoprecipitation and Western blot analysis. Subconfluent 293 cells seeded on 100-mm-diameter petri dishes were transfected with the indicated expression vectors by the conventional calcium phosphate procedure. Thirty-six hours later, cells were washed with ice-cold phosphate-buffered saline and then harvested in 1 ml of ice-cold lysis buffer (150 mM NaCl, 50 mM Tris HCl [pH 7.5], 0.5% NP-40, 10% glycerol) supplemented with 1 mM phenylmethylsulfonyl fluoride and protease inhibitors. Lysis was performed at 4°C for 20 min. The lysates were then clarified by centrifugation and incubated for 3 h at 4°C with anti-HMGA2 antibody (36) prebound to 20 µl of protein A-Sepharose CL-4B (Amersham Biosciences). The beads were then washed three times in 1 ml of ice-cold lysis buffer, and the bound proteins were solubilized by addition of 20 µl of SDS-containing sample buffer. Western blot analysis was performed by standard procedures with anti-HA primary antibody (Roche). Bound primary antibodies were visualized by enhanced chemiluminescence.
Transfections, luciferase assays, and immunocytochemical analysis. Transfections were performed by the standard calcium phosphate precipitation method. CHO cells were plated at a density of 0.7 x 106 cells per 60-mm-diameter culture dish and processed 32 h after removal of the precipitates. For luciferase assay, cells were transfected with 1 µg of the reporter construct, the indicated amount of the expression vectors, and 0.1 µg of pRL-CMV Renilla luciferase expression vector (Promega) to normalize for transfection efficiencies. The assay was performed with the dual-luciferase reporter assay system (Promega) according to the manufacturer's instructions.
For immunocytochemistry, SaOS-2 cells were plated 24 h before transfection at a density of 0.5 x 106 cells per 60-mm-diameter culture dish with a glass coverslip and transfected with 5 µg of pcDNA3HA-HMGA2 expression vector. At 32 h after removal of the precipitates, cells were fixed with 3% paraformaldehyde, permeabilized with 0.3% Triton X-100, and incubated with an anti HA-specific mouse monoclonal antibody (Roche) and an anti-cyclin A rabbit polyclonal antibody (Santa Cruz Biotechnology, Inc.). Immunofluorescence was monitored by incubation with an anti-mouse Cy3-conjugated secondary antibody (Sigma) and an anti-rabbit fluorescein isothiocyanate-conjugated secondary antibody (Sigma). Nuclei were stained with DAPI (4',6'-diamidino-2-phenylindole).
RT-PCR.
SaOS-2 cells were plated 24
h before transfection in 100-mm-diameter culture dishes and transfected
with 5 µg of pcDNA3HA-HMGA2 or pcDNA3HA expression vector. At
36 h after transfection, RNA was extracted by the guanidinium
thiocyanate method, and reverse transcription (RT) was performed in a
final volume of 50 µl with 2 µg of total RNA, 50 nmol
of random nonamer primers (Sigma), 1x reaction buffer, and 200
U of Moloney murine leukemia virus reverse transcriptase (RNase H
Minus; Promega). Twenty-five cycles of PCR were performed in a
50-µl volume with 10 µl of the RT mixture, 0.05
µl of [
-32P]dCTP (Perkin-Elmer
Life Science), 1x PCR buffer, and 50 pmol of each cyclin A
primer or 5 pmol of each GAPDH (glyceraldehyde-3-phosphate
dehydrogenase) primer. cDNA templates were incubated for 4 min at
94°C and amplified with cycles of 92°C for 1 min,
45°C for 1 min, and 75°C for 90 s, with a
final extension for 5 min at 75°C. In order to compare the PCR
products semiquantitatively, 20 to 30 PCR cycles were performed to
determine the linearity of the PCR amplification, and the amplified
GAPDH cDNA served as an internal control for cDNA quantity and quality.
The primers for cyclin A were
5'-GCCATTAGTTTACCTGGACCCAGA-3' and
5'-CACTGACATGGAAGACAGGAACCT-3',
and those for GAPDH were
5'-CAGCGACACCCACTCCTCCACCTT-3' and
5'-CATGAGGTCCACCACCCTGTTGCT-3'.
Amplified PCR products were separated on an 8%
polyacrylamide gel in 0.5x Tris-borate-EDTA buffer and
visualized by autoradiography. Amplification yielded amplified
fragments of the predicted sizes (cyclin A, 354 bp; GAPDH, 124
bp).
EMSAs.
The indicated amounts of purified
recombinant GST-E4F
60-358 were incubated with
32P-labeled DNA in 20 µl of binding buffer
containing 20 mM HEPES (pH 7.9), 50 mM KCl, 1 mM MgCl2, 0.1
mM EDTA, 5 mM dithiothreitol, 0.4 mM ZnCl2, 0.25 mg of
bovine serum albumin per ml, and 4% glycerol. For competition
binding reactions, the unlabeled competitors were included in the
reaction mixtures at the indicated molar excess. When assayed,
high-pressure liquid chromatography-purified recombinant
HMGA2wt and BSA proteins were included in the indicated
amounts. After incubation for 20 min at room temperature, samples were
loaded onto a native 6% polyacrylamide gel in 0.5x
Tris-borate-EDTA buffer, electrophoresed at 4°C at 15 V/cm,
dried, and exposed to X-ray film (Hyperfilm MP; Amersham Biosciences).
The following oligonucleotides (only the upper strand is shown) were
used in electrophoretic mobility shift assay (EMSA) experiments:
CycAwt,
5'-TGTCGCCTTGAATGACGTCAAGGCCGCGA-3';
CycAmut,
5'-TGTCGCCTTGACTCGAGTCAAGGCCGCGA-3'.
Chromatin
immunoprecipitation.
Chromatin immunoprecipitations were
performed essentially as described previously
(52). NIH 3T3 cells,
either serum starved for 60 h or restimulated for the
indicated time with 10% FCS, were incubated for 10 min with
1% formaldehyde. After addition of 0.1 M glycine, the
cross-linked material was broken with a Dounce homogenizer and
sonicated until the DNA was fragmented to 500- to 800-bp fragments.
Immunoprecipitation was performed with ProtG-Sepharose (KPL), using 3
to 5 µg of the following antibodies: anti-HMGA2
(36), anti-NF-YB
(9), anti-human
p120E4F (46),
anti-mouse p120E4F
(23), and anti-leader
binding protein 1 (anti-LBP1)
(9). The chromatin
solution was precleared by treatment with ProtG-Sepharose for
2 h at 4°C, aliquoted, and incubated with the
antibodies overnight at 4°C. Before use, ProtG-Sepharose was
blocked twice at 4°C with 1 µg of salmon sperm DNA
(sheared at 500 bp) per µl and 1 µg of BSA per
µl for 2 h and overnight. PCRs were performed with
the following primers: cyclin A,
5'-CTGTAAGATTCCCGTCGGGCCTTCG-3'
and 5'-GTAGAGCCCAGGAGCCGCGAG-3';
-globin,
5'-GGGCAACTGATAAGGATTCC-3' and
5'-AGCACCATGGCCACCAATCT-3'.
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FIG. 1. p120E4F
interacts with HMGA2. (A) 35S-labeled, in
vitro-translated p120E4F was incubated with either
Sepharose-bound GST (negative control) (lane 2) or GST-HMGA2 (lane 3).
Incubation of 35S-labeled p120E4F with GST-HMGA2
was also performed in the presence of increasing amounts of ethidium
bromide (EtBr) (lanes 5 to 7). The bound proteins were resolved by
SDS-PAGE and visualized by autoradiography. Lanes 1 and 4 contain
25% of the in vitro-translated reaction productsused in the pull-down experiments. (B) Lysates from 293 cells
cotransfected with 5 µg of pcDNA3HA-E4F 2.5K and 2 µg
of pcDNA3-HMGA2 expression vectors, as indicated, were
immunoprecipitated (IP) with an anti-HMGA2 antibody. Total lysates and
immunoprecipitates were then analyzed by Western blotting (WB) with an
anti-HA ( -HA) antibody to reveal p120E4F (upper
panel) or with an anti-HMGA2 antibody to detect HMGA2 protein (lower
panel).
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HMGA2 activates the cyclin A promoter by relieving the p120E4F-mediated repression. Next we assessed the functional consequences of the p120E4F-HMGA2 interaction. p120E4F behaves as a transcriptional repressor, and it recently has been demonstrated that inhibition of cyclin A is an event required for p120E4F-dependent cell cycle arrest in G1 and that the cyclin A promoter activity can be repressed by the binding of p120E4F to the CRE site (16). Therefore, we asked whether HMGA2, by associating with p120E4F, could be involved in controlling the cyclin A promoter. The activity of a reporter construct containing the promoter region of the human cyclin A gene cloned upstream of the luciferase gene (CycAwt) (Fig. 2A) was therefore tested in transient-transfection assays. Cotransfections of CHO cells with the reporter construct and the p120E4F expression vector result, in agreement with previous data (16), in a twofold repression of the luciferase activity (Fig. 2B, bar 2). Strikingly, this repression could be completely relieved by cotransfecting increasing amounts of the HMGA2-expressing vector (bars 3 and 4). Moreover, the transfection of the HMGA2 expression vector alone, in the absence of p120E4F expression vector, induced the activity of the reporter vector (bars 5 and 6). To confirm that the observed promoter activity was linked to an increase in the amount of the expressed proteins, aliquots of the lysates were subjected to Western blot analysis (Fig. 2B, lower panels).
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FIG. 2. HMGA2
overexpression relieves the inhibitory effect of p120E4F on
cyclin A transcription. (A) Diagrams of luciferase reporter
genes under the transcriptional regulation of the wild-type human
cyclin A promoter (CycAwt) as well as the promoter mutated
at the CRE (CycAmut). The CRE, CAAT box, and CCRE/CHR
elements are indicated. (B) CHO cells were transiently
cotransfected with 1 µg of the luciferase reporter plasmid
CycAwt (bars 1 to 6), 1 µg of the expression plasmid
pcDNA3HA-E4F 2.5K (bars 2 to 4), and 1 or 2 µg of the
expression plasmid pcDNA3HA-HMGA2 (bars 3 and 5 and bars 4 and 6,
respectively). One hundred nanograms of pRL-CMV Renilla
luciferase expression vector was included to normalize for transfection
efficiencies. Values are reported as relative luciferase activity.
Standard deviations are indicated for experiments repeated three times.
The amounts of transfected p120E4F and HMGA2 in each sample
were controlled by Western blot (WB) analysis. p120E4F
protein was revealed with an anti-p120E4F
( -p120E4F) antibody, while the amount of HMGA2 was
controlled by using an anti-HMGA2 antibody. (C) An identical
transfection experiment was carried out with the luciferase reporter
plasmid CycAmut, which contains a cyclin A promoter mutated
in the
CRE.
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HMGA2 activates the expression of the endogenous cyclin A gene. To further strengthen these observations, we carried out transfection experiments with SaOS-2 cells, which express very low levels of HMGA proteins (our unpublished data), and an HMGA2-expressing vector and analyzed the expression of endogenous cyclin A by a semiquantitative RT-PCR. RNA extracted from cells transfected with the HMGA2-expressing vector or with the empty vector was amplified by using primers for cyclin A and for GAPDH as a control. As can be seen in Fig. 3A, the expression of cyclin A in HMGA2-transfected cells (lane 3) was higher than that in control cells (lane 2), while the expression of GAPDH was constant.
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FIG. 3. HMGA2
induces the expression of the endogenous cyclin A. (A) SaOS-2
cells were transfected with 5 µg of pcDNA3HA-HMGA2 expression
plasmid (lane 3) or with the same amount of pcDNA3HA empty vector (lane
2). At 48 h after transfection, cells were harvested and the
extracted mRNA was amplified by RT-PCR with primers for cyclin A (left
panel) and for GAPDH as a control for cDNA quantity and quality (right
panel). In lane 1, the reverse transcriptase was omitted from the
RT-PCR. (B) SaOS-2 cells were transfected with 5 µg
of HMGA2 expression plasmid and immunostained for overexpressed HMGA2
and endogenous cyclin A. Left panel, typical result of this experiment.
HMGA2-expressing cells were identified by using an anti-HA
( -HA) antibody directed to the tagged protein (red). Cells
expressing endogenous cyclin A were monitored by using an anti-cyclin A
antibody (green). Nuclei were stained with DAPI (blue). Right panel,
percentages of cyclin A-expressing cells among HMGA2-positive or
-negative cells. Standard deviations are indicated for experiments
repeated three
times.
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Together, these results demonstrate an HMGA2-dependent induction of the endogenous cyclin A gene.
Binding to HMGA2 requires the two
N-terminal zinc-fingers of p120E4F.
As a first step to gain insight into
the molecular mechanism responsible for this effect, we mapped the
regions of p120E4F that are involved in the interaction with
HMGA2. To this end, various deletion mutants of p120E4F
cloned in the pcDNA3HA vector were in vitro translated and tested for
their ability to bind recombinant GST-HMGA2 in pull-down experiments
(Fig.
4A). As summarized in Fig. 4B,
progressive deletions from the p120E4F C-terminal end
(constructs E4F 694, E4F 551, E4F 427, E4F
60-358, and E4F
262; lanes 1 to 13) removing residues 262 to 783 had no effect on HMGA2
binding even though the four-zinc-finger cluster, which is involved in
the binding to p53 (46)
and p14ARF (43), was
completely deleted. A more extended deletion completely abolished the
interaction (construct E4F 162, lanes 14 and 15), suggesting that the
region containing the first two zinc fingers is involved in the binding
with HMGA2. This result was further confirmed by using the construct
E4F
153-299, which contains the two N-terminal zinc fingers
and shows a strong and specific interaction with HMGA2 (lanes 20 and
21). Deletions from the N-terminal end, E4F
60-783 and E4F
350-783, confirm this result. The weak binding detected with
E4F
350-783 is very likely due to the presence of four zinc
fingers that, although they have a function different from those at the
N-terminal region, share structural similarities.
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FIG. 4. Binding
to HMGA2 requires amino acids 162 to 262 of p120E4F.
(A) 35S-radiolabeled, in vitro-translated
wild-type (wt) p120E4F and various E4F N-terminal and
C-terminal deletion mutants were incubated with GST-HMGA2 or GST
immobilized to Sepharose beads in GST pull-down assays. The bound
proteins were resolved by SDS-PAGE and visualized by autoradiography.
Twenty-five percent of the in vitro-translated reaction products used
in the pull-down experiments were included (input). The pull-downs of
the E4F deletion mutants with GST gave negative results and are not
shown. (B) Schematic representation of the various E4F
constructs used in the pull-down assays and summary of their abilities
to bind HMGA2. The zinc finger domains are shown as black boxes.
Numbers refer to amino
acids.
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60-358 (lane 5) but not with E4F 162 (lane 4). As a
control, the cell lysates used in the experiment were tested by Western
blotting for the expression of p120E4F and HMGA2 proteins
(Fig. 5, middle and lower
panels, respectively). These results are consistent with those obtained
in vitro and clearly demonstrate that binding in vivo requires the
region containing the two N-terminal zinc fingers of
p120E4F.
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FIG. 5. Mapping
of the interaction domains of p120E4F in vivo. Lysates from
293 cells cotransfected with 5 µg of pcDNA3HA vectors,
expressing wild-type (wt) p120E4F and different
p120E4F deletion mutants, and with 2 µg of
pcDNA3-HMGA2 expression vector (lanes 2 to 5) or empty vector (lane 1)
were immunoprecipitated (IP) with an anti-HMGA2 ( -HMGA2)
antibody. The immunoprecipitates were then analyzed by Western blotting
(WB) with an anti-HA antibody (upper panel, lanes 1 to 5). Total
lysates used in the immunoprecipitation experiment were controlled for
the amount of transfected E4F constructs with an anti-HA antibody
(middle panel). Transfected HMGA2 protein was revealed with an
anti-HMGA2 antibody (lower
panel).
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FIG. 6. Binding
to p120E4F requires amino acids 44 to 63 of HMGA2.
(A) Upper panel, purified recombinant wild-type (wt) HMGA2
and several HMGA2 deletion mutants were probed in a far-Western blot
analysis with 35S-radiolabeled in vitro-translated
p120E4F. Lower panel, Western blot analysis of the membrane
with an anti-HMGA2 antibody. (B) Schematic representation of
the various HMGA2 constructs used in the far-Western experiment and
summary of their abilities to bind p120E4F. The functional
domains of HMGA2 and the ectopic sequence fused to HMGA2 described for
a uterine leiomyoma (29)
are indicated. Numbers refer to amino acids. (C)
35S-radiolabeled, in vitro-translated p120E4F was
incubated with GST-HMGA2 (positive control) (lane 2), GST-TRXA
(negative control) (lane 3), GST-TRX44/63 (lane 4), and GST-TRX53/72
(lane 5) in a GST pull-down assay. All of the GST proteins used were
bound to Sepharose beads. The bound proteins were resolved by SDS-PAGE
and visualized by autoradiography. Lane 1 contains 25% of the in
vitro-translated reaction products used in the pull-down
assay.
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B
(36).
HMGA2
interferes with E4F binding to the CRE element.
We then investigated at the molecular
level how the effect of HMGA2 on the cyclin A promoter could be
explained. To this end, we tested by EMSA the effect of a purified
HMGA2wt recombinant protein on E4F binding to the cyclin A
CRE site (Fig.
7). An affinity-purified GST-E4F
60-358 fusion protein gave rise
to a protein-DNA complex in a dose-dependent fashion (lanes 2 to 5).
This complex is specific, since it was competed by an excess of the
self cold probe CycAwt (lane 6) but not by the mutant
CycAmut probe (lane 7). The E4F-DNA complex was then tested
with increasing amounts of HMGA2wt recombinant protein
(lanes 8 to 11). As can be seen, increasing amounts of
HMGA2wt progressively inhibited the formation of the E4F-DNA
complex, which disappeared with the highest concentration of
HMGA2wt added (lane 11) while in parallel a fast-migrating
complex appeared. This complex is due to the association of
HMGA2wt with the DNA, since it also appears in the absence
of GST-E4F
60-358 fusion protein (lanes 17 to 19), and is
specific, since mutations that replace the AT bases present within and
5' to the CRE in GC abolish the binding of HMGA2wt
to the DNA (data not shown). It is interesting that there is a
supershifted complex (lane 10), derived from the association of
HMGA2wt with the E4F-DNA complex, as an intermediate before
the complete disappearance of the E4F-DNA complex. The
HMGA2wt-mediated effect is specific, since the addition of
BSA had no effect on E4F-DNA complex formation (lanes 12 to
15).
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FIG. 7. HMGA2
interferes with E4F binding to the CRE element. Increasing amounts of
purified GST-E4F 60-358 fusion protein (0.3, 0.6, 1.2, and 2
pmol [lanes 2 to 5, respectively]) were incubated with the
32P-radiolabeled CycAwt oligonucleotide (from bp
-140 to -112 relative to the most 3'
transcription initiation site) in an EMSA experiment. Lane 1, free
probe. Competitions were performed on the maximal amount of GST-E4F
60-358 tested by using a 100-fold molar excess of unlabeled
wild-type CycAwt (lane 6) or CRE-mutated competitor
CycAmut (lane 7). Increasing amounts of purified recombinant
wild-type (wt) HMGA2 (0, 4, 8, and 12 pmol [lanes 8 to 11,
respectively]) or BSA (0, 4, 8, and 12 pmol [lanes 12 to 15,
respectively]) were incubated with a fixed amount of GST-E4F
60-358 (2 pmol). Increasing amounts of purified recombinant
wild-type HMGA2 (0, 4, 8, and 12 pmol [lanes 16 to 19,
respectively]) were also incubated with the
CycAwt probe in the absence of GST-E4F 60-358. Lane
16, free
probe.
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-globin promoter that is not expressed in these
cells. As shown in Fig.
8A, compared to the
control antibody, binding of HMGA2 to cyclin A is negligible in
G0 and G1 cells but becomes apparent at
18 h, corresponding to S-phase cells, while at 24 h
the binding is no longer visible. We could not observe any association
of HMGA2 with the control
-globin promoter at the different
time points.
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FIG. 8. Association
of HMGA2 and p120E4F with the cyclin A promoter is regulated
during the cell cycle. (A) Chromatin immunoprecipitation
analysis of HMGA2 binding to the cyclin A promoter in vivo was
performed with NIH 3T3 cells. Immunoprecipitations of sonicated,
cross-linked chromatin samples, taken at G0 and at different
time points (6, 12, 18, and 24 h) poststimulation,
corresponding to the G1, G1/S, S, and
G2/M phases of the cell cycle, were performed with
antibodies raised against HMGA2 and LBP1, a cellular DNA-binding
protein used as a negative control. DNAs corresponding to cyclin A
(left panel) and to -globin used as negative control (right
panel) were PCR amplified with the indicated oligonucleotides (see
Materials and Methods). The input chromatin taken prior to
immunoprecipitation was used as a template for PCR amplification
(input). (B) Chromatin immunoprecipitation analysis of
p120E4F binding to the cyclin A promoter was performed as
described for panel A with antibodies against NF-YB, human
p120E4F, mouse p120E4F, and LBP1 as a negative
control.
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In this study we report that HMGA2, an architectural transcription factor which is directly involved in cell proliferation and neoplastic transformation, associates with the transcriptional repressor p120E4F, resulting in the induction of the cyclin A gene. Cyclin A is a key factor controlling cell cycle progression both at the S phase entry and at the G2/M transition by binding to cdk2 and cdc2 kinases, respectively (37, 45).
HMGA2-mediated cyclin A induction is due to interference with p120E4F repressing activity. Although several reports indicate that HMGA proteins are architectural factors, able to enhance the DNA binding of DNA-interacting proteins promoting the formation of enhanceosomes, data have been published showing an inhibitory effect of HMGA on DNA binding of other factors, usually by sterically blocking the functional binding of transcription factors to their recognition sites in gene promoters (42). Would it thus be possible to extend the mechanism that we found for the cyclin A gene to other p120E4F target genes? Although the cyclin A gene is the only cellular target thus far demonstrated for p120E4F, it is likely that other genes involved in the control of cell cycle progression are regulated by p120E4F, as ectopic expression of p120E4F can induce cell cycle arrest at the G1/S and G2/M transitions even when cyclin A mRNA and protein levels are not reduced (22, 44). The association of HMGA2 with p120E4F through the region containing the DNA-binding domain could therefore constitute a switch that displaces p120E4F-containing complexes from cyclin A and other, yet-to-be-defined, p120E4F target genes. According to this hypothesis, the expression of HMGA2 in human tumors could inactivate the repressing effect of p120E4F on cell growth.
Another important consideration refers to the region of
HMGA2 involved in p120E4F protein-protein interaction. This
is a very short region comprising and flanking the second AT hook,
which we have previously shown to be involved in the interaction with
NF-
B (36).
Moreover, the corresponding region in HMGA1 is involved in the
interaction with other transcription factors as well. Two lysine
residues within this region were shown to be acetylated by CBP/p300 and
P/CAF and to be critical for the disassembly and assembly of the
enhanceosome at the beta interferon gene
(34). This short domain,
which can be targeted by posttranslational modifications, plays an
important role in HMGA proteins in establishing connections with
nuclear factors and is therefore crucial for the architectural role
played by these factors.
HMGA2-mediated cyclin A gene induction occurs through the CRE element. The cyclin A promoter is regulated during G0 and G1 by contiguous cis-acting elements, the CDE-CHR bipartite element (8, 27, 38). Different transcription factors, among which are the pocket proteins (pRb and p107), have been shown to be involved in the binding to these elements, but the mechanism remains to be characterized and is still a matter of controversial discussion (27, 38). The cyclin A promoter region also contains a CRE site. Several reports show that the CRE site plays an important role in transcriptional activation of the cyclin A gene (5, 13, 35, 48, 49). Most studies indicate that CRE is constitutively occupied in G1-phase cells, and it has been proposed that the CDE-CHR could act in concert with CRE to confer proper cell cycle regulation to cyclin A gene expression (49). The CRE is recognized by CREB and ATF family members that belong to the family of basic leucine zipper proteins, which are able to form homo- and heterodimers and cross-family heterodimers with members of the AP1 family. As a consequence, different factors binding to CRE have been identified in different cell types. It has been shown that the different compositions of the subunits, as well as their posttranslational modifications, are involved in the response to different stimuli (e.g., serum induction or cyclic AMP) acting through the CRE to regulate the cyclin A gene (5, 13, 35, 48, 49). The CRE site is also recognized by p120E4F, raising the question of how the access of p120E4F to this site and subsequent transcriptional regulation are controlled (16). Interestingly, it has been hypothesized that auxiliary proteins, such as HMGA, could be possible regulators (16). Indeed, HMGA proteins can modulate the access of transcription factors to DNA and are regarded as highly connected nodes of protein-DNA and protein-protein interactions that influence a diverse array of normal and pathological processes, participating in a wide variety of nuclear processes, ranging from chromosome and chromatinic mechanics to architectural transcription factors (40). In this report we show that HMGA2 activates the cyclin A gene through the CRE and that this effect also occurs in the absence of ectopic expression of p120E4F. This could be explained by assuming a competition with the endogenous p120E4F, but it could also be due to an effect of HMGA2 on other transcription factors binding to CRE. Indeed, it has been demonstrated that HMGA1a could enhance the binding of basic leucine zipper-containing factors, increasing the stability of dimers (14). In addition, we demonstrated by EMSA experiments that HMGA2 can enhance the binding of ATF-2 to the CRE (data not shown). Therefore, we propose that HMGA2 regulation of the cyclin A gene occurs by modulating the access of transcription factors binding to the CRE. This occurs through protein-protein interactions, but since we demonstrated that HMGA2 interacts with DNA in a region containing the CRE, it is also possible that structural modifications of DNA induced by HMGA could play a role in this effect. In this scenario, HMGA2 could therefore function by shifting the balance between p120E4F-mediated repression and CREB/ATF activators binding to the CRE, favoring the latter (Fig. 9). Importantly, in this view HMGA2 is not constitutively bound to the cyclin A promoter throughout the cell cycle. Chromatin immunoprecipitation experiments in fact show HMGA2 bound to the promoter only at 18 h after serum induction, which corresponds to the time when the cyclin A gene is activated. In fibroblasts stimulated by serum, HMGA2 is a delayed-early-responsive gene with peak expression at 7.5 to 20 h (31). The expression of HMGA2 is therefore modulated during the progression through the cell cycle, and its kinetic is compatible with the activation of the cyclin A gene. Moreover, the timely regulated association of p120E4F with the promoter is consistent with the proposed model, since p120E4F binds in G2/M but not during S phase, when the promoter is occupied by HMGA2 and the gene is active. Interestingly, p120E4F is not detected in G0, suggesting that is not implicated in cyclin A repression in growth-arrested cells.
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FIG. 9. HMGA2-dependent
activation of the cyclin A gene. A model explaining the effect mediated
by HMGA2 at the CRE of the cyclin A gene is proposed. HMGA2 interferes
with p120E4F binding to the CRE and facilitates the binding
of ATF/CREB family members, resulting in the activation of
transcription.
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Cyclin A is the first identified HMGA2 target gene involved in neoplastic transformation. Our finding that cyclin A is a direct target gene of HMGA2 is consistent with the role proposed for HMGA2 in cell transformation and cell growth during embryogenesis. The HMGA2 protein has been implicated in the pathogenesis of a variety of benign solid human tumors (2, 20, 47, 50), and its role has been demonstrated by using transgenic mice overexpressing wild-type HMGA2 or HMGA2 mutants (1, 3, 6, 18, 19). Moreover, it was reported that the pygmy phenotype in mice was caused by the disruption of both Hmga2 alleles (55). These mice show a small size and a drastic reduction of body fat content, and, interestingly, Hmga2-/- embryonic fibroblasts have a decreased rate of cell proliferation. This suggested an involvement of HMGA2 in the control of critical steps of the progression through the cell cycle, and our results involve cyclin A as a possible effector of HMGA2 in this phenotype.
In conclusion, this work establishes cyclin A as a mediator of HMGA2-dependent cell cycle regulation. The characterization of other molecular partners of HMGA2 will allow definition of the role played by this factor in cell proliferation and tumorigenesis.
This work was supported by grants from Associazione Italiana per la Ricerca sul Cancro (AIRC), Milan, Italy, to R.M., G.D.S, and V.G.; by ASI grant I/R/129/00 to V.G.; by Università degli Studi di Trieste, Italy, to G.D.S., G.M., and V.G.; and by a MIUR Cofin grant to R.M. and V.G. M.G., R.S., C.I., and G.C. are supported by a FIRC fellowship.
Present address: Dipartimento di Genetica e di Biologia dei Microrganismi, University of Milan, 20133 Milan, Italy. ![]()
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