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Molecular and Cellular Biology, January 2004, p. 144-153, Vol. 24, No. 1
0270-7306/04/$08.00+0 DOI: 10.1128/MCB.24.1.144-153.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115
Received 18 July 2003/ Returned for modification 4 September 2003/ Accepted 6 October 2003
| ABSTRACT |
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| INTRODUCTION |
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One puzzling feature associated with the physiological role of IEG induction is that their global expression is associated with agents as diverse as mitogenic growth factors, differentiating factors, and environmental insults, such as osmotic shock and ionizing radiation. Therefore, if the same panel of IEGs are induced by different extracellular agents, how does this lead to the generation of an appropriate biological outcome? One possibility is that different signaling pathways induce a specific subset of IEGs, and this promotes a specific outcome. Substantial experimental evidence suggests that this is not the case (2, 12, 24, 35). What is known, however, is that the kinetics and amplitude of ERK signaling can regulate various cell fate decisions (21, 39). This laboratory has recently illustrated how the c-Fos IEG product functions as a sensor for the duration of ERK signaling in fibroblasts (26). The expression of c-Fos is posttranslationally regulated by differences in signal kinetics, and this controls c-Fos-dependent proliferation and transformation. The fundamental significance of this is demonstrated by the observation that changes in the duration of ERK signaling dictate whether or not c-Fos protein is expressed transiently (30 min) or in a more sustained manner (up to 4 h). This suggests that differences in signal properties, such as duration and strength, can modulate an IEG expression program that is initially generic at the transcriptional level to one that is fine-tuned in a signal-specific manner at the posttranslational level.
The process whereby c-Fos activity is regulated during sustained ERK signaling occurs in two stages (26). First, nuclear localization of ERK and the 90-kDa ribosomal S6 kinase (RSK) leads to the phosphorylation of Ser374 and Ser362 in the COOH terminus of c-Fos, respectively, and this reduces the rate of c-Fos degradation. Under conditions of transient ERK signaling, the c-fos gene is induced, but c-Fos protein, appearing after the initial stimulus, is not modified and therefore is unstable. Second, phosphorylation of Ser374 and Ser362 primes the additional phosphorylation of Thr325 and, to a lesser extent, Thr331. Efficient phosphorylation of these latter two residues is dependent on an ERK docking DEF (docking site for ERK, FXFP) domain found between amino acids (aa) 343 and 346 (Phe-Thr-Tyr-Pro). Importantly, mutation of the c-Fos DEF domain reduces AP-1 transcription and completely prevents the ability of c-Fos to mediate cellular transformation (26). The essential role for the DEF domain in c-Fos function prompted us to visually examine other IEG products for the presence of DEF domains. This revealed that in addition to c-Fos, other IEG products from the Fos, Jun, and Myc family contain putative DEF domains, suggesting that they may also function as ERK sensors. The majority of these ERK sensors are encoded by proto-oncogenes and are therefore predicted to have an important role in promoting cellular transformation. In this study, we show that several of these putative sensors, (Fra-2, Fra-1, and c-Myc) indeed have functional DEF domains and that ERK docking controls the phosphorylation of physiologically relevant sites. Interestingly, the transcriptional induction of one of these sensors, Fra-1, is itself under the direct control of the earlier-expressed c-Fos sensor, indicating that the products of growth factor-inducible genes can provide specific long-term temporal information about the properties of ERK signaling. ERK sensors also exhibit the ability to distinguish between small differences in the strength of ERK signals that result from minute changes in agonist concentration. This ultimately results in substantial changes in downstream gene expression and the efficiency with which cells enter S phase.
| MATERIALS AND METHODS |
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Cell culture. NIH 3T3 cells were cultured in Dulbecco's minimal essential medium (DME) containing 10% fetal calf serum (FCS), and Swiss 3T3 cells were cultured in DME containing 10% heat-inactivated fetal bovine serum (FBS). Plasmid DNA was transfected into NIH 3T3 cells (1.8 x 105 per 35-mm-diameter dish) by using Lipofectamine reagent (Invitrogen Corporation) for 6 h, and then cells were deprived of serum growth factors for a further 20 h. Swiss 3T3 cells (0.8 x 106) were cultured in 100-mm dishes for 30 h and then deprived of serum growth factors for 40 h. Epidermal growth factor (EGF; 25 ng/ml) and platelet-derived growth factor BB (PDGF-BB; 20 ng/ml) were obtained from Invitrogen Corp. In certain experiments, cells were preincubated with 5 µM UO126 or vehicle control (0.1% dimethyl sulfoxide [DMSO]) for 30 min prior to addition of growth factors.
Cell lysis and Western blotting. Following treatment of cells with growth factors, lysis was performed as described previously (31). Cell extracts were either directly subjected to Western analysis or in some cases used for immunoprecipitation. The expression of c-Myc in Swiss 3T3 cells was measured by immunoprecipitating endogenous c-Myc from cell extracts with a mouse anti-c-Myc monoclonal antibody (sc-42) from Santa Cruz Biotechnology, Inc., followed by Western analysis with an anti-c-Myc antibody (06-340) from Upstate Biotechnology, Inc. To measure the phosphorylation of Ser62, c-Myc was overexpressed in NIH 3T3 cells, immunoprecipitated from cell extracts, and then subjected to Western analysis with an anti-phospho-Ser62 antibody (34) or a mouse anti-human c-Myc monoclonal antibody (9E10) to control for variation in c-Myc levels. The anti-ERK and anti-phospho-Thr325 c-Fos antibodies were used as previously described (26). The mouse anti-phospho-ERK1/2 antibody was obtained from Sigma-Aldrich; anti-human c-Fos was obtained from Upstate Biotechnology, Inc.; anti-c-Jun was obtained from Cell Signaling Technologies; and anti-Fra-1 (sc-605), anti-Fra-2 (sc-604), anti-JunB (sc-73), anti-Egr-1 (sc-110), and anti-cyclin D1 (sc-753) antibodies were obtained from Santa Cruz Biotechnology, Inc. For each Western blot, nitrocellulose membrane was rinsed briefly in purified water prior to incubation in blocking solution (phosphate-buffered saline [PBS] containing 0.02% [vol/vol] Tween 20 and 3% [wt/vol] nonfat dried milk) for 20 min. The primary antibodies were diluted 1:1,000 in blocking solution and incubated with the membrane for 12 h at 4°C. The nitrocellulose was rinsed three times with purified water and then incubated with secondary antibody in PBS containing 3% (wt/vol) nonfat dried milk (90 min at room temperature). Finally, the membrane was rinsed three times in water, once in PBS-0.02% (vol/vol) Tween 20 (5 min), and a further five times in water before enhanced chemiluminescence with the ECL system was performed.
Kinase assay.
ERK1 was immunoprecipitated from cell extracts, and its kinase activity was determined by suspending the immune complex in kinase buffer (7) in the presence of 10 µCi of [
-32P]ATP and 2 µg of glutathione S-transferase (GST)-RSKD2/K464R at 30°C for 10 min. Kinase reactions were stopped by adding sodium dodecyl sulfate sample buffer and boiling for 3 min. Samples were resolved using sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and the phosphorylation of GST-RSKD2/K464R was quantitated with a phosphorimager.
BrdU analysis. Indirect immunofluorescence analysis was performed as described previously (26), except cells were incubated with bromodeoxyuridine (BrdU) for 15 min prior to fixation. For quantitation, cells were harvested with trypsin, washed in PBS, and fixed in ice-cold 70% ethanol (1 h). To extract histones and denature cellular DNA, cells were incubated with 0.1 N HCl with 0.5% Triton X-100 (10 min), resuspended in double-distilled water, incubated at 100°C (10 min), and washed in PBS containing 0.5% Triton X-100. For direct immunofluorescence staining, cells were incubated for 30 min with anti-BrdU fluorescein isothiocyanate-conjugated antibody (Becton Dickinson), washed in 0.5% Tween 20 plus 1% bovine serum albumin in PBS, resuspended in propidium iodide stain buffer (0.5% Tween 20, 250 µg of DNase-free RNase A per ml, 20 µg of propidium iodide per ml). After staining, samples were analyzed by fluorescence-activated cell sorting (FACS) with a FACScan flow cytometer (Becton Dickinson), and data were acquired and analyzed with CellQuest software (Becton Dickinson Immunocytometry Systems).
| RESULTS |
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When c-Myc expression was analyzed, a transient and weak induction was observed in EGF-treated cells (Fig. 3C, lanes 1 to 7), which likely reflects the short t1/2 (
7.5 min) for hypophosphorylated c-Myc (34). Under sustained ERK signaling conditions with PDGF, levels of c-Myc were higher and were maintained for the duration of the experiment (Fig. 3C, lanes 8 to 14).
Sustained ERK signaling is required for extended expression of IEG products. The results from the experiments described above illustrate a strong correlation between sustained ERK signaling and sustained expression of several IEG products containing DEF domains. To extend this further, we induced IEG product expression with PDGF and examined the requirement for sustained ERK activity for maintenance of IEG protein expression. If sustained ERK signaling is required for the extended expression of several of these IEG products, inhibition of ERK signaling with the MEK inhibitor should result in their rapid turnover. Thus, UO126 was added to cells already induced with PDGF (90 min) in order to convert the sustained signal into a more transient signal (Fig. 4A, lower panel, compare lanes 3 to 7 with lanes 9 to 13). Manipulating ERK signaling in this way had a strong effect on the extended expression of all IEG products examined. The expression of Egr-1, Fra-2, c-Jun, and JunB was reduced when UO126 was added to PDGF-treated cells (Fig. 4A). UO126 also reduced the levels of c-Myc detected in cells treated with PDGF for 2, 4, or 6 h (Fig. 4B, compare lanes 3 to 5 with 7 to 9). Delaying the addition of UO126 until after 2 h of PDGF treatment allowed c-Myc to reach its maximum expression level (Fig. 4B, lane 11), but levels then subsequently declined after a further 2 and 4 h of culture in the presence of both PDGF and UO126 (Fig. 4B, lanes 12 and 13). This is in contrast to maximal c-Myc levels being maintained in control cells (Fig. 4B, lanes 3 to 5, and Fig. 3C, lanes 12 to 14). Since PDGF does not significantly induce ERK5 activation in Swiss 3T3 cells (L.O. Murphy and J. Blenis, unpublished observations), the effect of UO126 on IEG expression (Fig. 4) can be fully attributed to inhibition of the MEK1/2-ERK pathway and not the MEK5-ERK5 pathway, the activation of which is also UO126 sensitive (17).
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Reduced ERK signal strength results in loss of IEG hyperphosphorylation, stability, and subsequent target gene expression. The mechanisms that regulate ERK signal duration are not fully understood but may involve differential regulation at the level of phosphatases (29, 32, 36, 37), receptor internalization, and trafficking (30) and possibly alternative modes of Raf activation by Ras or Rap1 (42). Differences in signal amplitude and duration may also be simply a consequence of receptor density. Low receptor numbers would result in transient pathway activation, whereas 10- to 100-fold more receptors would result in more persistent activation (9, 38). We hypothesized that by reducing the amount of PDGF used to treat quiescent Swiss 3T3 cells, the sustained activation of ERK signaling would be converted into a more transient activation. If true, then IEG product phosphorylation and stability would be adversely affected. Indeed, reducing the PDGF concentration from 10 to 4 ng/ml converted the expression profile of c-Fos and Egr-1 from sustained to transient (Fig. 5A). Furthermore, while the initial activation of ERK after 10 min of induction was not significantly altered by reducing the amount of PDGF, the sustained phase of ERK signaling was (Fig. 5C). As anticipated, Thr325 phosphorylation in c-Fos was greatly reduced in cells treated with 4 ng of PDGF per ml compared to cells treated with 10 ng of PDGF per ml, despite the fact that c-Fos levels were nearly identical in both cases (Fig. 5B). Thus, the response associated with sustained ERK signaling (hyperphosphorylation and stabilization of IEG product) is changed to a transient response (hypophosphorylation and transient expression of IEG product) by a surprisingly small decrease in agonist concentration.
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If the effects of ERK signal strength and duration on cell cycle control are mediated via IEG-encoded transcription factors, then sensor-regulated downstream gene expression should also be affected by signal kinetics. Since the cyclin D1 gene is under the direct control of the AP-1 transcription complex (5), cyclin D1 expression could represent a critical link between ERK signaling kinetics, IEG sensors, and cell cycle progression. If this is the case, small decreases in ERK signal strength that convert sustained c-Fos expression to more transient expression (Fig. 5A) would also be predicted to affect cyclin D levels. To examine this, quiescent Swiss 3T3 cells were cultured in the presence of 10 or 4 ng of PDGF per ml for 3, 6, 9, or 12 h, and cyclin D1 expression was measured by immunoblotting. Although the two doses of PDGF induced cyclin D1 expression (i.e., no delayed induction with 4 ng/ml), the levels were significantly reduced in cells treated with 4 ng/ml (Fig. 6A). Finally, to determine whether the small decrease in ERK signal strength differentially regulates G1-S progression, BrdU incorporation was performed, and quantitated by fluorescence-activated cell sorter (FACS) analysis. Both doses induced BrdU incorporation after 11 to 13 h; however, at each time point, the number of BrdU-positive cells was significantly reduced when 4 ng/ml was used (Fig. 6B). Quantitation showed that after 12 h in the presence of 10 ng of PDGF per ml, there was more than a 6-fold increase in BrdU incorporation, whereas 4 ng/ml was associated with only a 2.5-fold increase (Fig. 6C). These observations show that a two- to threefold change in agonist concentration is associated with subtle differences in ERK signal strength and duration. These apparently modest changes in ERK signal timing, however, are propagated into substantial differences in the phosphorylation state and expression of multiple IEG products, downstream sensor-regulated gene expression, and cell cycle progression.
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| DISCUSSION |
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Understanding how sustained ERK and RSK signaling regulates c-Fos has provided a molecular framework to explain how differences in signal duration lead to the generation of a specific biological outcome (26). During sustained signaling, ERK- and RSK-mediated phosphorylation of the c-Fos COOH terminus primes hyperphosphorylation at Thr325 and Thr331 (26). Hyperphosphorylation also requires an intact DEF domain, and when mutated, Fos-mediated transformation is inhibited (26). In the present study, we have specifically shown that Fra-2, Fra-1, and c-Myc also have functional DEF domains that are required for their hyperphosphorylation. Experimental and sequence analyses show that posttranslational control of Fra-2 and Fra-1 is likely very similar to that of c-Fos due to the presence of priming phosphorylation sites and DEF domain-mediated phosphorylation sites in their COOH termini. Interestingly, the transactivation potential of Fra-1 is completely inhibited when Thr231 is mutated to alanine (43), and our findings indicate that this residue is under the regulation of the DEF domain. In the case of c-Myc, the DEF domain regulates the ERK-dependent phosphorylation of Ser62. Since phosphorylation of Ser62 promotes c-Myc stability, DEF-dependent docking of ERK to c-Myc would lead to c-Myc stabilization. Interestingly, the DEF domain and NH2-terminal phosphorylation sites Ser62 and Thr58 both flank a region known as Myc box II (MbII). MbII is required for the assembly of a high-molecular-weight complex that contains the transformation-transactivation domain-associated protein (TRRAP) and TIP49/TIP48 (23, 41). This complex is required for Myc-dependent transformation and may be involved in chromatin modification of Myc target genes (10). Apart from directly phosphorylating Ser62, ERK docking to c-Myc may also have a role in regulating the recruitment and/or activity of the TRRAP complex.
Several other IEG products have expression patterns that are characteristic of the Fos and Myc family sensors. For example, differences in signal duration can regulate c-Jun expression just like c-Fos. Based on sequence analysis, however, it is predicted that c-Jun does not contain a functional DEF domain (26). Nevertheless, it is known that the ERK pathway can control the phosphorylation of Ser63 and Ser73 during sustained signaling in PC12 cells (19). How can c-Jun expression be regulated by sustained ERK signaling in the absence of a DEF domain? One possibility is that transphosphorylation of Ser63 and Ser73 by Fos-associated ERK would result in increased c-Jun stabilization and transcriptional activation. In support of this, JNK-mediated transphosphorylation of c-Jun dimerization partners has been demonstrated (16). Another possibility is that the stabilization of Fos family proteins indirectly controls the stability of Jun proteins, because Jun/Fos dimers are more stable than Jun/Jun dimers (1).
The phosphorylation of Thr102 and Thr104 in JunB is thought to be predominantly regulated by JNK and not p38 or ERK (20). Interestingly, these amino acids, which are required for JunB-driven interleukin-4 expression in Th2 lymphocytes (20), are located NH2 terminal to the putative DEF domain in JunB (26). It is possible that in different cell types and in the presence of an appropriate partner protein, the DEF domain facilitates the ERK-dependent phosphorylation of JunB, and future work is required to investigate this possibility. Finally, ERK-mediated differentiation of PC12 cells requires Egr-1 transcription activity to increase the expression of p35, an Egr-1 target gene (14). While the role of the Egr-1 DEF domain is presently unknown in this process, the possibility exists that ERK docking controls the stability and/or transcriptional activity of Egr-1. Interestingly, several putative ERK phosphorylation sites (Ser-Pro) are located NH2 terminal to this DEF domain (26), and Egr-1 itself is phosphorylated in vivo (6).
The observations in this study illuminate a global mechanism that is responsible for dictating cellular responses to ERK signal duration. This mechanism takes into account the effect of both signal kinetics and signal strength. We believe that the presence of DEF domains in several growth factor-induced sensors enables the cell to respond to small increases or decreases in signal strength. This concept is best exemplified by the response of Fra-1 to sustained ERK signals. In Swiss 3T3 fibroblasts, although ERK activity at the G1-S boundary is only 10 to 20% of that measured after 10 min of initial stimulation, it is nevertheless sufficient to promote hyperphosphorylation of Fra-1. This and other evidence strongly suggests that DEF domains locally concentrate the active ERK to Fos, Jun, Myc, and Egr-1 sensors during sustained signaling, and this results in efficient phosphorylation of target phosphoacceptor sites.
The transcriptional induction of fra-1 can be directly regulated by c-Fos (4) and as a result is compromised in c-fos-/- osteoclasts and fibroblasts (22, 33). This suggests that in addition to the role of ERK signaling directly on Fra-1 protein, the effect of signal duration on the c-Fos sensor can also determine the transcriptional induction of fra-1. Although Fra-1 expression occurs only when ERK signaling is sustained (i.e., cells treated with PDGF but not EGF), c-Fos is still transiently expressed and is hypophosphorylated in EGF-treated cells but is not sufficient to induce Fra-1. This implies that growth factor-induced fra-1 expression requires prior ERK-mediated phosphorylation and/or stabilization of c-Fos. This important observation discriminates between an absolute requirement of c-fos for the induction of fra-1 expression, as indicated by the behavior of c-fos-/- cells, and an essential posttranslational role for ERK signaling in this process. Further support for the latter mechanism comes from experiments in which signal strength was reduced. With low doses of PDGF, although the expression of c-Fos was relatively transient, it was nonetheless phosphorylated to a greater extent than that normally associated with EGF treatment, and critically, this preceded Fra-1 expression in Swiss 3T3 cells. We believe that after the initial c-Fos-dependent induction of fra-1 (33), Fra-1 protein is hyperphosphorylated by ERK, and this primarily contributes to sustained Fra-1 expression in G1. Thus, the c-Fos-Fra-1 pathway is an example of how two sensors that have overlapping expression profiles provide the cell with temporal information about the amplitude of ERK signaling.
The ability of a single cell to respond to minute changes in the concentration of extracellular stimuli underlies processes that control embryonic development, cell morphology, migration, differentiation, and proliferation. In fibroblasts, a two- to threefold change in PDGF concentration can result in a modest reduction in ERK signal strength. This small change in ERK signaling, however, leads to large differences in the expression kinetics and phosphorylation of IEG-encoded sensors and cell cycle progression. This response to agonist concentration resembles the behavior of Drosophila and Xenopus embryos to morphogens. In these systems, as little as a two- to fourfold change in morphogen concentration can result in quantitative differences in gene expression and cell fate outcome (13). Many morphogens, such as Screw and Activin, control rapid activation of "early" target genes independent of ongoing protein synthesis (13), which resembles the IEG response to extracellular stimuli. Morphogens are also associated with the delayed expression of "late" target genes, and it has been proposed that the combination of intracellular signaling and the presence of early proteins can regulate late gene expression (28). During embryonic development, an IEG sensor-like mechanism could allow individual cells to interpret their position in a morphogen gradient and therefore would be required to generate a specific cell fate.
In conclusion, the uniform response shown by DEF domain-containing IEG products to differences in ERK signal duration and strength demonstrates that these gene products can collectively act as sensors for ERK signaling. Since IEG products are induced by a diverse range of extracellular stimuli, these proteins may have the general capacity to interpret differences in the kinetics of signaling pathways other than ERK. Therefore, this model in part may help explain how complex intracellular signals can be decoded and ultimately transduced into a phenotypic change in cell behavior.
| ACKNOWLEDGMENTS |
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L.O.M. is a Leukemia & Lymphoma Society Special Fellow. This work was supported by NIH grant RO1CA46595 (J.B.) and a Special Grant for Research from the American Cancer Society, New England Division (L.O.M.).
| FOOTNOTES |
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