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Molecular and Cellular Biology, September 2004, p. 7669-7680, Vol. 24, No. 17
0270-7306/04/$08.00+0 DOI: 10.1128/MCB.24.17.7669-7680.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Molecular and Cellular Oncology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas,1 Department of Radiation Oncology, School of Medicine, The University of North Carolina, Chapel Hill, North Carolina2
Received 14 January 2004/ Returned for modification 18 February 2004/ Accepted 31 May 2004
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Previous studies have identified the interaction of the ribosomal protein L5 with HDM2 (14). Recently, it has been shown that the ribosomal protein L11 also interacts with HDM2, and through this interaction, L11 stabilizes and activates p53 and induces a cell cycle arrest (13, 41). This is achieved, at least in part, through L11 inhibiting the E3 ligase activity of HDM2 (41). Based on the evidence that low levels of actinomycin D, which selectively inhibits rRNA transcription, enhances L11-HDM2 interaction, it has been proposed that L11 plays a role in the response to ribosomal perturbations to induce p53 and cell cycle arrest. In this study, we describe functional interactions of HDM2 with L23, a protein component in the 60S large ribosomal subunit. The interaction of HDM2 with L23 involves a domain in HDM2 that is distinct from that required for L11 binding, and L23 and L11 can simultaneously bind with HDM2 to form a ternary complex. Our data indicate that L23 reacts to inhibitions of rRNA biogenesis distinctively from that of L11 and suggest that multiple ribosomal proteins interact with HDM2 and that each may play a different role in regulating the HDM2-p53 pathway in response to perturbations of protein or ribosomal biogenesis.
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Immunoprecipitation, immunoblotting, and immunostaining. Mouse monoclonal antibody to HDM2 (Ab-1; Oncogene Research Products), goat polyclonal antibody to human p53 (FL393; Santa Cruz), and mouse monoclonal antibody to human p53 (DO-1; NeoMarkers) were purchased commercially. Rabbit polyclonal antibody to human L23 was produced by a synthetic peptide based on a DNA sequence corresponding to amino acid residues 81 to 96 of human L23 (VIRQRKSYRRKDGVFL). Procedures and conditions for immunoprecipitation, immunoblotting, and immunostaining were previously described (9).
Ad and retrovirus infections. Adenovirus (Ad) expressing human L23 was produced by subcloning full-length L23 into the vector pShuttle, and recombinant Ad was produced by overlap recombination. Sources of Ad expressing human p53, HDM2, and human ARF and procedures for Ad infection were described elsewhere (42, 44). E6 retroviruses were infected in WI38 cells and selected as previously described (10).
Cell transfection and fluorescence-activated cell sorter analysis. Cell transfections were carried out by using either Effectene or Lipofectamine reagents (Invitrogen, Carlsbad, Calif.) according to the manufacturer's instructions. For fluorescence-activated cell sorter analysis, cells were cotransfected with the indicated plasmid DNA, harvested by trypsinization, fixed in 70% ethanol, and stained with propidium iodide (50 µg/ml) containing 50 µg of RNase A/ml. Flow cytometry analysis was conducted by using a Becton Dickinson FACScan. Green fluorescent protein (GFP) was used as a marker for analysis of transfected cells. Results for DNA content from at least 20,000 cells are presented in the DNA histograms.
siRNA interference. Purified and annealed duplex small interfering RNA (siRNA) oligonucleotides targeting nucleotides 147 to 168 relative to the translation initiation codon of human L23, siRNA oligonucleotides targeting nucleotides 363 to 383 relative to the translation initiation codon of human L11, and control scrambled siRNA oligonucleotides were synthesized at Dharmacon (Lafayette, Colo.). Transfection was performed by using Lipofectamine and Plus reagents (Invitrogen) according to the manufacturer's instructions.
Indirect immunofluorescence. Indirect immunofluorescence was previously described in detail (43). Antibodies to human p53 and HDM2 were previously described (42). Texas Red- and fluorescein isothiocyanate-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories) were purchased commercially.
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FIG. 1. HDM2 interacts with ribosomal protein L23. (A) Mass spectrometry identification of HDM2 binding proteins. Extracts of U2OS cells infected with the indicated Ad for 2 days were immunoprecipitated with HDM2 antibody 4B11 and were resolved on a silver-stained gel (SDS-12.5% PAGE). Three ribosomal proteins, L5, L11, and L23, were identified based on peptide sequences obtained from the mass spectrometry. HDM2, anti-HDM2; IgG, immunoglobulin G; K, thousands. (B) Binding between ectopically expressed HDM2 and L23. HeLa cells were transfected with indicated plasmid DNA for 24 h. Each cell extract was immunoprecipitated (IP) with antibodies to either HDM2 (4B11, left panel) or myc (9E10, right panel), and the precipitates were resolved by SDS-PAGE, transferred onto a nitrocellulose membrane, and blotted with antibodies to HDM2 (N20; Santa Cruz) and myc (A14; Santa Cruz). myc, anti-myc; +, present; , absent. (C) Binding between endogenous HDM2 and L23. Endogenous HDM2 and L23 binding was detected by coIP from SJSA cells with antibodies to HDM2 (4B11) and L23, and Western blotting (WB) was performed as described above. Saos2 cells were served as a negative control. L23, anti-L23.
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FIG. 2. Mapping of the HDM2 domain for L23 binding and the L23 domain for HDM2 binding. (A) Mapping of the HDM2 domain for L23 binding. Extracts from U2OS cells transfected with the indicated plasmid DNA encoding deletion mutants of HDM2 were immunoprecipitated with HDM2 antibodies (4B11 for lanes 1, 6, and 7; SMP14 for lane 2; 2A10 for lanes 3 and 5), and the precipitates were resolved by SDS-PAGE, transferred to a nitrocellulose membrane, and blotted with a mixture of two rabbit anti-HDM2 ( -HDM2) antibodies (N20 and H228; Santa Cruz). A diagram of each deletion mutant is shown. WT, wild type; -myc, anti-myc; WB, Western blotting; +, present; , absent. (B) Mapping of the L23 domain for HDM2 binding. Extracts from U2OS cells transfected with the indicated plasmid DNA encoding deletion mutants of L23 were immunoprecipitated with HDM2 antibody 4B11, and the precipitates were resolved by SDS-PAGE, transferred to a nitrocellulose membrane, and blotted with antibodies to HDM2 (N20) and myc (A14) as indicated. A diagram for the deletion mutants is shown.
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FIG. 3. L23 and L11 simultaneously interact with HDM2 to form ternary complexes. Extracts from U2OS cells infected with Ad expressing HDM2 for 2 days were immunoprecipitated (IP) with L23 antibodies, and Western blotting (WB) was performed with antibodies to HDM2 (4B11), L11, and L23. Endog, endogenous; -L23, anti-L23; -L11, anti-L11; -HDM2, anti-HDM2.
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FIG. 4. L23 inhibits HDM2-mediated p53 polyubiquitination and degradation. (A) Ectopic expression of L23 stabilizes HDM2 and p53. U2OS cells were transfected with the indicated plasmid DNA for 2 days, and cell extracts were resolved by SDS-PAGE, transferred onto a nitrocellulose membrane, and blotted with antibodies as indicated. Plasmid DNA expressing GFP was cotransfected as a control. +, present; , absent; -HDM2, anti-HDM2; -p53, anti-p53; -myc, anti-myc; -GFP, anti-GFP. (B) Ectopic expression of L23 stabilizes HDM2 and p53 in normal human fibroblast cells. WI38 cells were infected with virus expressing HDM2 for 2 days, and cell extracts were resolved by SDS-PAGE, transferred onto a nitrocellulose membrane, and blotted with antibodies as indicated. Virus expressing GFP was coinfected as a control. -actin, anti-actin. (C) L23 inhibits HDM2-mediated p53 polyubiquitination. U2OS cells were transfected with the indicated plasmid DNA for 2 days, and the cells were treated with MG132 (25 µM) for 5 h before lysing. Cell extracts were analyzed by Western blotting with antibodies to p53 (D01) and myc (9E10) as indicated. (D) L23 stabilizes HDM2 independent of p53. WI38-E6 cells were infected with viruses expressing GFP, HDM2, and myc-L23 as indicated. Cells were lysed 2 days after infection, and the cell lysates were blotted as described above. Endog, endogenous; -L23, anti-L23.
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FIG. 5. L23 induces a p53-dependent cell cycle arrest. (A and B) L23 overexpression stabilizes and activates p53. Normal human fibroblast WI38 cells and isogenic mutant WI38-E6 cells were infected with the indicated Ad for 2 days. Western blotting was performed as described above. -myc, anti-myc; -HDM2, anti-HDM2; -p53, anti-p53; -p21, anti-p21; -actin, anti-actin. (C and D) L23 induces a p53-dependent cell cycle arrest. WI38 and WI38-E6 cells were infected with the indicated viruses. Cells were harvested 2 days after infection, fixed with 70% ethanol for 2 h, and stained with propidium iodide for 1 h, and the cell cycle distribution was determined by flow cytometry. Cell populations in the S phase are indicated as percentages of total cells. (E) L23 interacts with HDM2 in the nucleoplasm. U2OS cells were singly infected with Ad expressing myc-L23 for 2 days. Cells were then fixed with 3% paraformaldehyde for 10 min and immunostained with a rabbit anti-myc antibody (9E10) and a mouse anti-HDM2 antibody (N20). Nuclei were visualized by 4',6'-diamidino-2-phenylindole (DAPI) staining. Fluorescence images were captured with a cooled charge-coupled device color digital camera (model 2.2.0; Diagnostic) on an Olympus IX70 inverted microscope equipped with the appropriate fluorescence filters.
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Knocking down L23, but not L11, activates p53 and induces cell cycle arrest. To examine the effect of down-regulation of L23 on the function of HDM2 and p53, we carried out an RNA interference experiment to knock down endogenous L23 in U2OS cells and examined the endogenous protein level and the transcriptional activity of p53 by both Western blotting and cell cycle analysis. When L23 was knocked down to approximately half of its original level, there was a moderate but reproducible increase of the protein levels of p53 (Fig. 6A, lane 3). Accompanied by an increased p53 protein level, its transcriptional activity was also increased, as shown by the increased protein levels of HDM2 and p21, the downstream targets of p53's transcriptional function (Fig. 6A). In contrast, however, knocking down L11 to approximately half of its original level did not increase the protein level or the transactivation activity of p53, but rather it appeared to decrease the level of p53 (Fig. 6B). Thus, L23 and L11 apparently employ different mechanisms in regulating HDM2-p53 function. Consistent with the Western blotting results, knocking down L23 also induced a cell cycle arrest in U2OS cells (Fig. 6C), whereas knocking down L11 did not apparently affect the cell cycle distribution (Fig. 6D).
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FIG. 6. Knocking down L23, but not L11, activates p53 and induces a cell cycle arrest. (A and B) U2OS cells were either untreated (Buffer) or transfected with a control scrambled RNA duplex (siScr), L23 siRNA (siL23), or L11 siRNA (siL11) for 2 days. Cell extracts were collected and analyzed by Western blotting with the indicated antibodies. -HDM2, anti-HDM2; -p53, anti-p53; -p21, anti-p21; -L23, anti-L23; -actin, anti-actin. (C and D) U2OS cells were transfected with siRNA as described for panels A and B. Cells were harvested 2 days after transfection, fixed with ethanol, and stained with propidium iodide, and their cell cycle distribution was determined by flow cytometry. Percentages of cells in S phase are shown. The averages of the results from two independent experiments are shown as bar graphs.
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FIG. 7. Down-regulation of L23-induced cell cycle arrest is dependent on the function of p53. (A and B) Normal human fibroblast WI38 cells and isogenic mutant WI38-E6 cells were transfected with either a control scrambled RNA duplex (siScr) or L23 siRNA (siL23) for 2 days, and cell extracts were analyzed by Western blotting with the indicated antibodies. -HDM2, anti-HDM2; -p53, anti-p53; -p21, anti-p21; -L23, anti-L23; -actin, anti-actin. (C and D) WI38 and WI38-E6 cells were transfected siRNA as described for panels A and B. Cells were harvested 2 days after infection and stained with propidium iodide, and their cell cycle distribution was determined by flow cytometry. Percentages of cells in S phase are shown. (E) Down-regulation of L23 releases nucleolar B23. U2OS cells were transfected with the indicated siRNA for 2 days. The cells were then fixed and stained with a mouse anti-B23 ( -B23) antibody (Zymed) and an fluorescein isothiocyanate-conjugated anti-mouse secondary antibody (Jackson ImmunoResearch). Fluorescence images were captured with a cooled charge-coupled device color digital camera (model 2.2.0; Diagnostic) on an Olympus IX70 inverted microscope equipped with the appropriate fluorescence filters.
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Inhibition of ribosomal biogenesis down-regulates the protein level of L23. Actinomycin D has been used as a chemotherapeutic drug in the treatment of a variety of human cancers (4). At high concentrations (e.g., >30 nM), actinomycin D causes DNA damage and inhibits transcription from all three classes of RNA polymerase promoters, whereas at low concentrations (e.g., <10 nM), actinomycin D does not cause DNA damage but selectively inhibits RNA polymerase I-dependent transcription and, therefore, rRNA biogenesis (8, 24). To examine whether inhibition of rRNA biogenesis by actinomycin D may affect the level and/or localization of L23, we first determined the minimal dosage of actinomycin D that is able to induce p53 in U2OS cells. When U2OS cells were treated with an increasing amount of actinomycin D for 24 h, endogenous p53 was stabilized and activated at a concentration as low as 1.2 nM (Fig. 8A). Surprisingly, we also noticed a clear decrease in endogenous L23 when the cells were treated with actinomycin D, and the decrease is in an inverse correlation with the increase in p53. We further determined the incubation time of actinomycin D with cells that could cause the decrease of L23. At 5 nM, actinomycin D caused a significant decrease in L23 by 24 h of incubation but did not have much effect by 8 h (Fig. 8B). We consider the down-regulation of L23 to not be the consequence of cell cycle arrest, since cell cycle arrest induced by UV irradiation or serum starvation maintained normal levels of L23 (data not shown). Nor was it a result of inhibition of protein synthesis, since in actinomycin D-treated cells, p53 and HDM2 accumulated to high levels, indicating that protein synthesis remained active (Fig. 8A, lanes 5 and 6, and B, lanes 2 and 3).
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FIG. 8. Inhibition of ribosomal biogenesis decreases the protein level of L23. (A) Low concentrations of actinomycin D induce p53-dependent cell cycle arrest. U2OS cells were treated with the indicated concentrations of actinomycin D (Act D) for 24 h, and the cell lysates were analyzed by Western blotting as described above. -HDM2, anti-HDM2; -p53, anti-p53; -L23, anti-L23; -actin, anti-actin. (B) Time required for actinomycin D treatment to suppress L23. U2OS cells were treated with 5 nM actinomycin D for the indicated times, and the protein levels were analyzed as described above. (C) Inhibition of ribosomal biogenesis by 5 nM actinomycin D down-regulates L23 but not L11. U2OS cells were treated with 5 nM actinomycin D for 24 h before lysing, the cell lysates were resolved by SDS-PAGE, and Western blotting was performed as described above. -L11, anti-L11. (D) Ectopic expression of L23 suppresses endogenous L23. U2OS cells were infected with the indicated viruses for 2 days, and cell extracts were harvested and resolved by SDS-PAGE. The proteins were transferred onto a nitrocellulose membrane and blotted with the indicated antibodies. -myc, anti-myc. (E) Suppression of endogenous L23 by ectopically expressed myc-L23 was independent of HDM2 and p53. Normal human fibroblast WI38 cells were infected with the indicated viruses for 2 days. Cell extracts were harvested and resolved by SDS-PAGE, and the proteins were analyzed as described above. +, present; , absent.
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On the other hand, each of the HDM2-interacting ribosomal proteins may transmit different ribosomal biogenesis signals to the HDM2-p53 pathway so that multiple steps of ribosomal biogenesis could be tightly monitored. Our data indicated that the sites in HDM2 for L23 binding are different from those required for L11 binding and that L23 and L11 can bind HDM2 simultaneously to form a ternary complex (Fig. 3). Independent interaction with HDM2 and an ability to form a multi-ribosomal-protein-HDM2 complex support the notion that the different HDM2-binding ribosomal proteins could act independently to monitor different ribosomal stresses. Our study showed that the endogenous L23 and L11 reacted differently to actinomycin D treatment. We found that L23 drastically decreases in response to 24 h of actinomycin D treatment while the L11 level appears to be constant under the same treatment (Fig. 8C). The basis of the difference is not yet clear, but it further indicates that L23 and L11 react to different ribosomal stresses and use different mechanisms to inhibit HDM2. Ribosomal biogenesis is a highly coordinated process involving many important cellular functions. It is conceivable that perturbations of ribosomal function can occur at different stages of ribosomal biogenesis, and each of the HDM2-interacting ribosomal proteins may preferentially recognize a different ribosomal stress. This way, the cells ensure that the entire ribosomal biogenesis pathway is correctly and efficiently monitored. The two HDM2-binding ribosomal proteins, L11 and L23, clearly perform extraribosomal functions. There is previous evidence that a number of ribosomal proteins have secondary functions apart from both ribosome complex formation and protein synthesis, such as regulation of polymerase III transcription by S20, participation in DNA repair by S3, regulation of development by L19, and tumor suppression by S6 (39).
Our data have shown that cells maintain a constant level of L23 during growth. An abnormally high level of L23, such as that provided by Ad-mediated expression, causes a p53-dependent cell cycle arrest. An abnormally low level of L23, for example, that generated by L23 siRNA, also causes a p53-dependent cell cycle arrest. However, the mechanisms employed by an abnormally low level of L23 and an abnormally high level of L23 to induce p53 appeared to be very different. At a high level, the extra L23 interacts with and inhibits the E3 ligase function of HDM2 to stabilize and activate p53. At a low level, it induces nucleolar stress and releases B23 (and perhaps many other nucleolar components) into the nucleoplasm, and the nucleoplasmic B23, in turn, can induce p53-dependent cell cycle arrest (2, 27). We contemplate that one of the functions of L23-HDM2 interaction could be to coordinate regulations of cell growth and cell division. For example, DNA damage-induced p53 activation could, on one hand, stop cell cycle progression through activation of p21 and, on the other hand, inhibit ribosomal biogenesis through activation of HDM2, and the high level of HDM2 could take away newly synthesized L23 to inhibit ribosomal biogenesis.
Ribosomal biogenesis consumes a major part of the cell's energy and resources and plays a key role in the cell's life cycle (3, 20, 38). It is conceivable that the status of ribosomal biogenesis is constantly monitored in cells. Once abnormal activities of ribosomal function are detected and cells must stop growth, it is necessary to transmit the signals to the cell cycle regulators to simultaneously stop proliferation. The tumor suppressor p53, as it does in many other circumstances of cellular stress, plays a key role in integrating ribosomal stress signals and transmitting them to the cell cycle regulators. The involvement of p53 in the monitoring of ribosomal biogenesis has been shown in an early study in which depletion of ribonucleotide pools induces a p53-dependent cell cycle arrest that does not involve DNA damage (12). In a recent study, functional inactivation of Bop1, a nucleolar protein involved in rRNA processing and ribosomal assembly, led to a p53-dependent cell cycle arrest (25). Although unclear about the molecular mechanisms, these studies have demonstrated that, in multicellular higher-order organisms, the ribosome status is continuously monitored by thus far unknown mechanisms that involve the function of p53. The interaction of HDM2 with multiple ribosomal proteins provides a potential link between ribosomal biogenesis and p53 function, so the disturbance of ribosomal function can impinge on cell cycle progression.
The involvement of ribosomal proteins in regulating p53 function rekindles interest in the possibility that some ribosomal proteins may act as tumor suppressors. Considering the abundance of ribosomal proteins in proliferating cells, it is likely that a proportion of these proteins participate in extraribosomal functions (18). Previous studies have shown that deregulated expression of ribosomal proteins induces cell cycle arrest and apoptosis (19, 21). These studies suggest that, when not participating in the translational machinery, the ribosomal proteins may contribute to other cellular functions. It is tempting to postulate that the interaction of ribosomal proteins with the HDM2-p53 pathway constitutes a surveillance system, which may have developed during evolution, to safeguard the integrity of ribosomal biogenesis in higher-order eukaryotic cells and to coordinate growth with proliferation. In this regard, the idea that mutations either in the ribosomal protein genes (e.g., L11 or L23) or in HDM2 that prohibit their interaction could have developed in certain human cancers seems not too far fetched and deserves to be further explored.
Y.Z. is a recipient of a Career Award in Biomedical Science from the Burroughs-Wellcome Fund and a Howard Temin Award from the National Cancer Institute. This study was supported in part by the M. D. Anderson Research Trust Fund (to Y.Z.) and NIH grants CA100302 and CA87580 (to Y.Z.).
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