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Molecular and Cellular Biology, February 2004, p. 1540-1559, Vol. 24, No. 4
0270-7306/04/$08.00+0 DOI: 10.1128/MCB.24.4.1540-1559.2004
Copyright © 2004, American
Society for
Microbiology. All Rights Reserved.
Beatson Institute for Cancer Research, Cancer Research UK Beatson Laboratories, Glasgow G61 1BD, United Kingdom
Received 25 July 2003/ Returned for modification 26 August 2003/ Accepted 3 November 2003
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Invasion, the migration of cells through tissue boundaries, is, under normal circumstances, a tightly controlled process that is activated in many cell types in response to extracellular signals and ceases once the stimuli are withdrawn. Invasion is complex; the invasive cell must alter its cell-cell and cell-extracellular matrix (ECM) adhesions, control the degradation of the ECM, respond to chemoattractants, rearrange the actin cytoskeleton to facilitate motility, and suppress anoikis (95, 116). The complexity of invasion and tight regulation by extracellular signals, such as growth factors, suggests that it is a transcriptionally regulated multigenic program (13, 46, 71).
Growth factors that bind to receptor tyrosine kinases stimulate proliferation and invasion (13, 34, 53, 54, 61, 113). In human tumors, the growth factor-Ras-Raf-Mek-Erk signal transduction pathway is frequently constitutively activated by mutations in component genes (20). This leads to sustained changes in the activity of transcription factors, which translate the signals into long-term phenotypic responses through changes in gene expression (14, 62, 71, 103). The activator protein 1 (AP-1) family of transcription factors is regulated by the growth factor signal transduction pathway (26) and is important for invasion as well as proliferation (71, 76). Since AP-1 is a downstream effector of the growth factor signal transduction pathway, the sustained stimulation of its activity and subsequent changes in gene expression may be an epigenetic consequence of genetic activation of the Ras pathway by mutations in component proteins (5).
AP-1 denotes a collection of transcription factors composed primarily of heterodimers of Fos and Jun family proteins that recognize a consensus DNA sequence usually in the promoter region of target genes (43). The prototypes of each gene family were originally identified as retroviral oncogenes, thereby highlighting the importance of AP-1 to cellular transformation (18, 60, 106). Transformation by high concentrations of growth factors or oncogenes that function in the growth factor signal transduction pathway is dependent on the sustained increase in expression of AP-1 component proteins and AP-1 activity (71).
Based on the identification of an AP-1 DNA binding site in the collagenase promoter and its role in the degradation of ECM, AP-1 has been implicated in the targeting of genes involved in invasion (2, 17, 114). The epidermal growth factor (EGF)-dependent invasion of human squamous cell carcinoma-derived cell lines is dependent on AP-1 activity (61), as is the conversion of oncogenic Ras-induced hyperproliferative skin lesions into invasive carcinomas (56, 79, 80, 119). Increased expression of AP-1 component proteins, such as Fra-1, rather than mutational activation of AP-1 component proteins, is by far the most frequent means by which AP-1 activity is changed in tumors, and Fra-1 expression is associated with the acquisition of invasive potential by tumors (51, 109, 120).
Fos oncogenes can be used to specifically focus on the contribution of AP-1 to transformation, downstream of the growth factor signal transduction pathway. Transformation of immortal rat 208F fibroblasts with v-FosFBR renders the cells invasive, anchorage independent, and tumorigenic, but they remain dependent on serum for proliferation (34, 64). 208F cells can also be rendered invasive and anchorage independent by growth factor stimulation that induces the expression of AP-1 component proteins and increased AP-1 activity (34, 71). In both cases, invasion is dependent on AP-1 activity (46, 53, 54).
The ability of Fos oncogenes to transform cells is dependent on their functioning as transcription factors (24, 88, 115), which indicates that they mediate transformation through changes in gene expression (34, 46). Interestingly, the changes in expression of AP-1 component proteins following Fos or Ras transformation are similar, emphasizing the importance of AP-1 activation in transformation by oncogenes that function upstream of AP-1 (71). Analysis of genes differentially expressed in v-Fos-transformed 208F fibroblasts indicates that it results in the increased expression of genes that effect invasion (46, 53, 54, 71, 94). However, since v-Fos induces immortality and tumorigenicity in addition to invasion in rodent fibroblasts, it is difficult to determine if differentially expressed genes are specific effectors of invasion or play a wider role in the transformed phenotype (41). Furthermore, others have been unable to find a consistent phenotypic change associated with v-Fos expression in mortal human fibroblasts (1, 50). There is a potential role for tumor suppressors to suppress invasion, since loss or inactivation of tumor suppressors precedes invasion in most tumor model systems.
Herein we provide evidence, based on gene expression profiles, that v-Fos activates a multigenic invasion program in normal human fibroblasts in the presence of active tumor suppressor pathways (p16INK4a and p53) without affecting cell cycle regulation or anchorage-dependent proliferation and suggest that this system can be used to identify genes specifically associated with AP-1 mediated invasion.
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Generation of cell lines. Telomerase, oncogenic v-Fos, human papillomavirus type 16 (HPV16) E6, and mutant p53 were serially introduced into primary human fetal fibroblasts (hff). The hff strain was established by collagenase digestion of 16-week-old fetal skin. The cells were maintained in Dulbecco's modified Eagle's medium (DMEM) supplemented with 20 mM HEPES and 20% fetal calf serum (FCS). Early-passage hff were immortalized with the catalytic subunit of telomerase (hTERT) as described previously (68), and the cells were named Tif for "telomerase-immortalized fibroblasts."
To introduce v-FosFBJ/R into hff and Tif, the amphotropic packaging cell lines Phoenix Ampho (from G. Nolan, Stanford University) or Retropack PT67 (from Clontech Laboratories) were transfected with the retroviral constructs pLPCX (puromycin resistance) or pLPCX FBJ/R expressing Myc-tagged v-FosFBJ/R. The viral supernatants generated were used to infect hff/11 (22 population doublings [P.D.]) and Tif (50 P.D.) using 4 µg of Polybrene per ml. Cells were selected 8 days postinfection in 0.6 µg of puromycin per ml and puromycin-resistant colonies were pooled. Polyclonal populations were used in all experiments to avoid variation due to the clonal heterogeneity of the normal hff and Tif populations. Retroviral infections were repeated independently to confirm phenotypic observations.
p53 was inactivated in late-passage Tif by retroviral infection with either mutant p53 (from K. Ryan, Beatson Institute for Cancer Research) or HPV16 E6 (from A. Phillips, University Medical College of Georgia). Phoenix Ampho cells were transfected with pWZL p53.273H (blasticidin) or pWZL E6 (hygromycin), and the viral supernatants were used to infect Tif. Cells were selected 8 days postinfection by using 10 µg of blasticidin per ml or 100 µg of hygromycin per ml, and pools of drug-resistant colonies were collected.
A mutant form of Fos (aFos) (from R. Hennigan, University of Cincinnati College of Medicine) was expressed in Tif-puro and Tif-Fos by nucleofection. Cells (5 x 105) were resuspended in 100 µl of NHDF-Neo (Amaxa Biosystems) with 3 µg of pEGFP-aFos and nucleofected with program T-20. The cells were incubated for 1 day before being harvested for in vitro invasion assays.
Retrovirally infected cells were screened for virus production by using a C-type reverse transcription assay from Cavidi Tech (Uppsala, Sweden). All cells were routinely tested for mycoplasma contamination by Hoechst 33258 staining (12).
RNA interference. Transient expression of small interfering RNA (siRNA) was achieved by nucleofection. Tif-Fos cells (5 x 105) were resuspended in 100 µl of NHDF-Neo with 100 nM scrambled siRNA (CGAUCGAUCGAUCGAUCGA), EGF receptor (EGFR) siRNA 1 (CUCUGGAGGAAAAGAAAGU), or EGFR siRNA 2 (CACAGUGGAGCGAAUUCCU) (Dharmacon). Cells were incubated for 48 h before being harvested for Western blotting, growth curve measurement, immunofluorescence, and in vitro invasion assays.
Stable suppression of EGFR expression was achieved using pSUPER.retro (Oligoengine). The puromycin selection cassette was changed to blasticidin resistance, and 64-nucleotide oligonucleotides containing an inhibitory sequence for EGFR (TTCCTATGCCTTAGCAGTC) were annealed and ligated into pSUPER. Tif-Fos cells were retrovirally infected with pSUPER or pSUPER EGFR as described previously, and pools of blasticidin-resistant colonies were obtained.
P.D. and cell counting. Cells were counted at every passage, and P.D. were calculated from the formula P.D. = 3.32(log10 cells harvested - log10 cells seeded). Cell numbers were determined using a Casy 1 TT cell counter (Schärfe system). For cell growth curves, only attached cells were counted, but for flow cytometric analyses, adherent cells were trypsinized and combined with floating cells from the culture medium to allow analysis of the total cell population.
Western blotting. Cells were washed with phosphate-buffered saline and lysed for 30 min on ice in buffer containing 50 mM Tris (pH 8.0), 120 mM NaCl, 1 mM EDTA, 0.5% Nonidet P-40, phosphatase inhibitors (50 mM NaF and 50 µM Na3VO4), protease inhibitors (10 µg of aprotinin per ml, 10 µg of leupeptin per ml, and 1 mM phenylmethylsulfonyl fluoride). The extracts were cleared by centrifugation, and the supernatants stored at -70°C. Protein was quantified by the copper sulfate-bicinchoninic acid method and separated by gel electrophoresis.
Primary antibody incubations were carried out overnight at 4°C with antibodies against the following human proteins: Myc epitope (9E10; Invitrogen), p16INK4a (C-20; Santa Cruz), ERK2 (clone 33; BD Transduction Labs), phospho-p44/42 MAPK (Cell Signaling), p53 (DO-1; Santa Cruz), p21Cip1 (clone 70; BD Transduction Labs), EGFR (clone 13; BD Transduction Labs), and activated EGFR (clone 74; BD Transduction Labs). The blots were washed and probed with horseradish peroxidase-conjugated anti-mouse or anti-rabbit antibodies (Cell Signaling) and protein detected by enhanced chemiluminescence (Amersham Pharmacia).
Immunofluorescence. Expression of Myc-tagged v-Fos was detected by immunofluorescence as described previously (97). Cells were grown on glass coverslips for at least 1 to 2 days in DMEM-20% FCS, and v-Fos was detected with 9E10 and tetramethylrhodamine-5-isothiocyanate TRITC-conjugated anti-mouse antibody while F-actin was labeled with fluorescein isothiocyanate FITC-phalloidin.
Wound-healing assay. Cell motility was assessed using a modification of the wound-healing assay (97). A wound was made in a confluent monolayer of cells by using a 200-µl pipette tip. Three independent areas were marked for identification and photographed at various time points thereafter with a digital camera attached to a phase-contrast microscope. For quantitation of wound closure, the width of each wound at various time points was measured and expressed as a percentage of the original wound size.
In vitro invasion assay. Invasion was assessed using an in vitro assay (34) with the following modifications. Cells (104) were seeded onto the filter of a polycarbonate chamber containing 100 µl of complete matrigel basement membrane matrix (Becton Dickinson) (in the absence or presence of AG1478). After 3 h of attachment, the cells were washed and placed in serum-free DMEM in the absence or presence of AG1478. DMEM containing 20% FCS with or without EGF in the absence or presence of AG1478 was added above the matrigel as a chemoattractant, and the assay mixture was incubated for 3 days. Invasion was visualized by staining the cells directly with 4 µM calcein acetoxymethyl ester (calcein) (Molecular Probes Europe) in serum-free DMEM for 1 h at 37°C followed by confocal microscopic analysis using a Bio-Rad MRC 600 confocal illumination unit attached to a Nikon Diaphot inverted microscope. Quantitation was performed as described previously (34).
Soft-agar assays. Anchorage independence was assessed by growth in soft agar. A base layer of 0.5% agar (both Noble and Bacto agars were used independently) in DMEM containing 20% FCS was allowed to set in six-well plates. Cells (104 and 105) were seeded in 0.3% top agar in DMEM-20% FCS. Fresh top agar in DMEM-20% FCS was added once a week, and colonies were analyzed after 3 weeks.
Flow cytometric analysis. Analysis of the cell cycle phase distribution by propidium iodide staining for DNA content was carried out as follows. Cells were trypsinized and combined with floating cells in retained medium, fixed in ice-cold 70% ethanol, and stored at 4°C. The fixation medium was aspirated after centrifugation and the cells were then stained with 10 µg of propidium iodide per ml and 250 µg of RNase A per ml for 30 min. Cell cycle analyses were made using a Becton Dickinson FACScan. No fewer than 30,000 events were processed per sample, and the bitmap was fixed to discriminate against doublets (cell or nuclear aggregates). Cell cycle phase distributions (expressed as a percentage) were obtained by decomposition of the DNA content histograms by using Cell Quest software.
Microarray analysis with Affymetrix GeneChips. Total RNA was isolated from exponentially growing cells by using the RNeasy minikit (Qiagen). RNA (15 µg) was reverse transcribed with T7(dT)24 primer (Helena BioSciences). The double-stranded cDNA was in vitro transcribed with T7 RNA polymerase and biotin-labeled ribonucleotides (Affymetrix). The biotin-labeled cRNA was fragmented at 94°C for 35min. cRNA (15 µg) was hybridized onto Affymetrix GeneChip Human Genome U95Av2 arrays at the Cancer Research UK GeneChip service, Paterson Institute for Cancer Research, Manchester, United Kingdom.
Microarray data analysis. Using Microarray Suite v5.0, all probe sets on the arrays were scaled to a target intensity of 100 (with scaling factors for each chip within threefold of each other). We excluded genes which were flagged as absent in all samples, and data were normalized either using the Robust Multichip Average method in the Bioconductor "affy" method (6) or by correcting for differences in the mean values for each chip by using GeneSpring (Silicon Genetics). The Robust Multichip Average data were subjected to analysis of variance (ANOVA) (P < 0.05) and significance analysis of microarrays (SAM) (105) with the false discovery rate (FDR) set to 0. The edited Venn diagram selected lists were contained entirely in both the ANOVA and SAM lists (data not shown). Genes were annotated for gene symbol, gene name, and function by using UniGene and LocusLink (National Center for Biotechnology Information) according to the HUGO gene nomenclature committee.
Materials. Mouse EGF was obtained from Sigma. The EGFR inhibitor tyrphostin AG1478 was purchased from Calbiochem CN Biosciences.
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Normal diploid hff and Tif were infected with retroviruses encoding puromycin resistance (puro) or with a Myc epitope-tagged v-FosFBJ/R oncogene (Fos). Colonies of puromycin-resistant cells were pooled, and multiple polyclonal populations of cells were analyzed for the expression of v-Fos. Western analysis, performed using the 9E10 Myc epitope-specific monoclonal antibody to detect exogenous Myc-tagged v-FosFBJ/R protein is shown for representative populations of hff and Tif and demonstrates that only cells infected with the v-Fos virus expressed a protein of the correct molecular mass, 34 kDa for v-FosFBJ/R (65) (Fig. 1A). Immunofluorescence with the Myc antibody revealed that essentially all of the cells in the hff-Fos and Tif-Fos populations expressed the protein in the nucleus of the cell and that none of the control cells, hff-puro and Tif-puro, displayed nuclear staining with anti-Myc (Fig. 1B).
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FIG. 1. Expression
of v-Fos and altered morphology in human fibroblasts. Primary hff and
telomerase-immortalized hff (Tif) were infected with retroviruses
encoding either puromycin resistance (puro) or Myc-tagged
v-FosFBJ/R (v-Fos). Colonies of puromycin-resistant cells
were pooled and polyclonal populations were analyzed. (A)
Expression of v-Fos in the indicated cells was detected by Western
blotting for Myc-tagged v-FosFBJ/R with the 9E10 anti-Myc
monoclonal antibody. (B) hff-puro, hff-Fos, Tif-puro, and
Tif-Fos cells were costained with fluorescence-conjugated antibodies
for Myc and phalloidin (TRITC and FITC respectively). Bar, 25
µm.
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Morphological transformation was evident when the actin cytoskeleton was labeled with FITC-phalloidin, demonstrating that the hff-Fos and Tif-Fos cells displayed an equivalent reduction in F-actin stress fibers compared to control cells (Fig. 1B). The effect of v-Fos on the actin cytoskeleton is consistent with previous studies of Fos transformation in other fibroblasts (53).
v-Fos increases the rate of wound healing in human fibroblasts. To determine if v-Fos increases cell motility, a wound was made in confluent monolayers of Tif-puro cells (Fig. 2A) and Tif-Fos cells (Fig. 2B) and the closure of the wound was monitored over time. Tif-Fos cells migrated into the wound earlier than did the Tif-puro cells, which displayed a lag phase in wound healing. After only 4 h, Tif-Fos cells displayed 25% wound closure compared to only 3% for Tif-puro cells. By 12 h, wound closure increased to 75 and 45% for Tif-Fos and Tif-puro cells, respectively, and by 23 h, both cell types had essentially closed the wound (Fig. 2C).
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FIG. 2. Motility
of telomerase-immortalized fibroblasts expressing v-Fos. (A and B) A
wound was made in a confluent monolayer of Tif-puro (A) and
Tif-Fos (B) cells, and the area was marked for identification
and photographed after 0, 4 and 12 h. (C) Three
independent areas of each wound made in Tif-puro (gray bars) and
Tif-Fos (black bars) were measured, and the error bars show the
standard deviation of the mean percent wound closure after 4, 7, and
23
h.
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FIG. 3. Invasion
of human fibroblasts expressing v-Fos. An in vitro assay was used to
measure three-dimensional invasion through matrigel reconstituted
basement membrane matrix. Primary hff, hff-puro and hff-Fos, and
telomerase-immortalized hff, Tif-puro, and Tif-Fos were stained with
calcein after 3 days and a Z-series (6 to 30 µm) was captured
on a confocal microscope and merged into one image. Bar, 100
µm. Invasion assays were performed in duplicate, and two or
three independent fields per sample were analyzed and quantitated.
Invasion, in the absence (black bars) or presence of 100 ng of EGF per
ml (gray bars) or aFos (white bars) was expressed as a percentage of
the total number of cells seeded on the porous filter, and the error
bars represent the standard deviation of the
mean.
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FIG. 4. v-Fos
has no effect on proliferation or serum or anchorage dependence.
(A) Telomerase-immortalized fibroblasts. Tif, Tif-puro 1,
Tif-puro 2, Tif-Fos 1, and Tif-Fos 2 exhibited an increase in
saturation density with each passage after 80 cumulative P.D., which
correlated with a loss of p16INK4a expression as
demonstrated by Western blotting after 100 P.D. hff/21 (36 P.D.) was
used as a positive control for p16INK4a, and equal loading
was determined with anti-ERK2. (B) Growth curves of
telomerase-immortalized fibroblasts expressing v-Fos. Cells
(p16+ve and p16-ve) were grown in
20% serum, and once exponential growth was established after
72 h, the cells were washed and incubated with either
20% serum or a low concentration of serum (0.2%), as
indicated by the arrow. Cell proliferation was determined by counting
the number of attached cells every day. Each experiment was performed
in triplicate, and the error bars show the standard deviation of the
mean daily count. (C) Anchorage-dependent growth of
telomerase-immortalized fibroblasts with various combinations of v-Fos,
loss of p16INK4a (p16-ve), and
inactivation of p53 with HPV16 E6 or mutant p53 (273H). For each
experiment, 104 or 105 cells were seeded in soft
agar. Multiple experiments with multiple polyclonal populations of the
cells were performed. During a 3-week period, colony formation was
monitored and scored as 0 if there were no soft agar colonies. Tif-Ras
that had lost expression of p16INK4a and expressed a mutant
form of p53 (mtp53) were used as a positive control for colony
formation in soft
agar.
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Karyotyping was performed to determine if v-Fos altered chromosomal stability. Analysis of metaphase spreads revealed that hff, hff-puro, and hff-Fos cells remained diploid, 46,XY. The parental Tif cells were 46,XY with a translocation of 14q/14q, and v-Fos did not induce any additional chromosomal changes (data not shown). Hence, v-Fos does not induce gross chromosomal rearrangements.
Tif-puro and Tif-Fos cells retain a functional p53 response to DNA damage. Mutational inactivation of the p53 tumor suppressor pathway occurs in approximately 50% of human tumors (37), and inactivation of p53 is important for immortalization and transformation of human fibroblasts by oncogenic Ras (22, 29, 30).
To determine if v-Fos altered p53 function, the cellular response to DNA-damaging agents was assessed. Western blot analysis of p53 expression levels in Tif-puro and Tif-Fos cells revealed slightly elevated levels in Tif-Fos cells (Fig. 5A). However, Tif-puro and Tif-Fos cells both responded to DNA damage induced by etoposide (topoisomerase II inhibitor) by stabilization of p53 protein after 2 to 8 h and a subsequent increase in p21Cip1/Waf1 protein expression (Fig. 5A). Flow cytometric analysis demonstrated that after 20 h, the cells emptied out of S phase and accumulated in both the G1 and G2 phases of the cell cycle (Fig. 5B), which is consistent with a p53-mediated response to DNA damage (8, 47). Similar results were obtained with UV-induced DNA damage, and an enzyme-linked immunosorbent assay specific for mutant p53 (Oncogene Research Products) also confirmed wild-type p53 status (data not shown). These results are consistent with previous reports that telomerase expression does not affect p53 function (42, 66, 108) and further demonstrate that v-Fos does not inactivate p53.
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FIG. 5. v-Fos
does not alter the p53 response to DNA damage. (A) Comparison
of the expression levels of p53 and p21 in telomerase-immortalized
fibroblasts after DNA damage induced by etoposide. Cells were treated
with 1 µM etoposide and lysed at the indicated times for
Western blot analysis of p53 and p21Cip1/Waf1. p53 was
inactivated in Tif cells with HPV16 E6 or mutant p53 (mtp53). The
membranes were stripped and reprobed for ERK2 as a loading control.
(B) Flow cytometric analysis of the cell cycle phase
distribution after DNA damage induced by etoposide in
telomerase-immortalized fibroblasts. Exponentially growing cells were
incubated in the absence or presence of 1 µM etoposide for
20 h, stained with propidium iodide for DNA content, and
analyzed by flow cytometry. The DNA content histograms are shown along
with the distribution of cells in the G1, S and
G2/M phases of the cell
cycle.
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v-Fos does not alter the growth regulation of human fibroblasts. Despite inducing clear morphological transformation and rendering the cells invasive, v-Fos had no effect on growth rate, saturation density, or serum- and anchorage-dependent proliferation. The growth characteristics of the Tif-Fos cells were not radically distinct from those of Tif and Tif-puro cells. Tif-Fos grew to the same saturation density as Tif-puro when grown in 20% serum (Fig. 4B). Growth curves are shown for early-passage p16INK4a-expressing cells and late-passage p16INK4a-negative cells, demonstrating the twofold increase in saturation density observed in both Tif-puro and Tif-Fos cells after the loss of p16INK4a expression. Tif-Fos cells, like Tif-puro cells, were serum dependent for proliferation as judged by the cessation of proliferation on being transferred from 20% serum to a low (0.2%) serum concentration (Fig. 4B).
The Tif-Fos cells also resembled Tif-puro cells in that they remain anchorage dependent for proliferation. In multiple experiments, no colonies formed in soft agar after 3 weeks (Fig. 4C). The Tif-Fos cells were tested for anchorage independence both before and after the loss of p16INK4a expression, confirming that loss of the tumor suppressor p16INK4a was not sufficient to render Fos-transformed human fibroblasts anchorage independent. To determine if additional loss of function of the tumor suppressor protein, p53, altered the anchorage requirements of Tif-Fos cells, p53 was inactivated by expression of either E6 or mtp53 as detailed previously. Tif-Fos-E6 and Tif-Fos-mtp53 cells remained anchorage dependent despite having inactivated both the p16INK4a and p53 tumor suppressor pathways. These results indicate, as expected, that further changes are required to render human fibroblasts anchorage independent (29-31). The additional inactivation of p53 in late-passage (p16-ve) Tif-puro or Tif-Fos cells does not affect the invasiveness of the cells (data not shown). Hence, invasion is independent of the two major tumor suppressor pathways, pRb/p16INK4a and p53.
Gene expression profiling of invasive Tif-Fos cells. The v-Fos oncogene functions as a component of the AP-1 transcription factor and must mediate its phenotypic consequences, such as morphological transformation, increased motility, and invasiveness, through changes in gene expression. Since the main, if not sole, consequence of v-Fos expression in normal human fibroblasts is to render the cells invasive, analysis of genes differentially expressed in Tif-Fos cells should identify genes that specifically mediate invasion. Microarray analysis was performed with Affymetrix GeneChips using RNA derived from hff, Tif, Tif-puro, and Tif Fos cells. Four independent preparations of RNA from hff and Tif were used to ensure that the differences in gene expression were not due to telomerase expression. To exclude changes in gene expression due to puromycin selection, three independent preparations of RNA were made from two separate populations of Tif-puro. To identify changes in gene expression dependent on v-Fos expression, three independent RNA preparations were made from two separate Tif-Fos populations and a single RNA preparation was made from a third Tif-Fos population.
Hierarchical cluster analysis demonstrates that the global expression profiles from hff, Tif, and Tif-puro cells, although marginally distinct from each other, were closely related, while the Tif-Fos populations clustered separately (Fig. 6A). This validates the use of telomerase-immortalized fibroblasts as surrogates for primary fibroblasts for studying v-Fos transformation. It also demonstrates that the changes in gene expression detected in Tif-Fos cells are a consequence of v-Fos.
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FIG. 6. Gene
expression profiling. (A) Cluster dendrogram of all samples:
hff (x4), Tif (x4), Tif-puro (x6), and Tif-Fos
(x7). The metric used was Euclidean distance, and clustering
was done by the "complete" method as implemented in the
"mva" library in the "R" statistical
software. (B) Statistically significant changes in gene
expression assessed by SAM for all Tif-puro samples (x6) and
all Tif-Fos samples
(x7).
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TABLE 1. Selected
genes up-regulated in invasive Tif-Fos cellsa
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TABLE 2. Selected
genes down-regulated in invasive Tif-Fos cellsa
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The EGFR is up-regulated by v-Fos in human fibroblasts. The microarray analysis identified a significant increase in expression of EGFR. EGFR was up-regulated approximately 10-fold at the RNA level in all of the Tif-Fos populations. There was no difference in EGFR expression between the hff, Tif, or Tif-puro cells, indicating that the increase in expression is a consequence of v-Fos expression. Increased EGFR expression was confirmed by Western analysis of Tif-puro and Tif-Fos cells (Fig. 7A). Blotting with an antibody specific for phosphorylated EGFR reveals that the EGFR is constitutively active in the presence of v-Fos and further enhanced by EGF (Fig. 7A).
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FIG. 7. Expression
of EGF receptor and EGFR signaling in telomerase-immortalized
fibroblasts expressing v-Fos. (A) Western blotting
for expression of EGFR and activated EGFR (pEGFR) in Tif-puro
and Tif-Fos cells (100 µg of protein) in the absence and
presence of EGF (100 ng/ml for 10 min). A431 cells (25 µg of
protein) were used as a positive control, and equal loading was
determined using anti-ERK2. (B) Tif-puro and Tif-Fos cells
incubated in low (0.2%) serum (LS) for 60 h were
stimulated for 15 min with EGF (100 ng/ml), and phosphorylation of ERK
was detected with the p44/p42 mitogen-activated protein kinase
phosphospecific antibody (pERK1 and pERK2). EGFR-mediated signaling to
ERK was inhibited by a 10-min pretreatment with the EGFR-specific
inhibitor tyrphostin AG1478 (0.5 and 1.25 µM). Total ERK2 is
shown as a loading control. (C) Suppression of EGFR
expression by RNA interference. Tif-Fos cells were
nucleofected with either scrambled siRNA or EGFR siRNA (100 nM). After
2 days, the cells were lysed and EGFR
expression was determined by Western blotting.
Parallel cultures of cells were trypsinized and incubated in an in
vitro invasion assay for 3 days, and EGFR expression was
again determined by Western blotting. Tif-Fos cells were also infected
with retroviruses encoding pSUPER or pSUPER. EGFR and EGFR expression
was determined by Western blotting in two independent polyclonal
populations of each. A431 cells were used as a positive control, and
ERK2 expression was determined as a loading control. (D)
Tif-puro and Tif-Fos cells were nucleofected with siRNA. After
48 h, proliferation was assessed by counting the attached
cells in the absence or presence of 100 nM EGFR siRNA, 0.5 µM
AG1478, or 100 ng of EGF per ml. (E) Tif-puro and Tif-Fos
cells were stained for actin stress fibers with phalloidin-FITC in the
absence or presence of EGF (100 ng/ml) for 24 h with or
without pretreatment (10 min) with AG1478 (1.25 µM). Fos
expression was detected with the 9E10 anti-Myc monoclonal antibody and
anti-mouse-TRITC. Bar, 100 µm. (F) Tif-Fos cells
transiently expressing scrambled or EGFR siRNA (100 nM for 72h) or
stably expressing pSUPER or pSUPER EGFR were stained with
phalloidin-FITC in the absence or presence of EGF (100 ng/ml) for
24 h. Fos expression was detected with the 9E10 anti-Myc
monoclonal antibody and anti-mouse-TRITC. Bar, 100 µm.
(G) Invasion of Tif-Fos in the absence (black bars) or
presence of AG1478 (0.5 and 1.25 µM, gray bars) with or without
EGF (100 ng/ml) for 3 days. Invasion was quantitated as described in
Materials and Methods and normalized with respect to invasion of
Tif-Fos alone. The error bars represent the standard deviation of the
mean change. (H) Invasion of Tif-Fos cells transiently
expressing scrambled (black bars) or EGFR (gray bars) siRNA 2 days
after nucleofection, in the absence or presence of EGF (100 ng/ml) for
3 days or stably expressing pSUPER (black bars) or pSUPER EGFR (gray
bars). Invasion is normalized with respect to invasion of Tif-Fos
alone, and the error bars represent the standard deviation of the mean
change.
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To further investigate EGFR function in Tif-Fos cells, expression of the EGFR was knocked down by RNA interference by using either transient expression of EGFR siRNA or stable suppression of endogenous RNA with pSUPER EGFR. Figure 7C demonstrates that EGFR expression was successfully inhibited with siRNA against two different target sequences for EGFR after 2 days, although expression levels were starting to increase after a further 3 days. Expression of pSUPER EGFR completely suppressed EGFR expression in two individual polyclonal populations of Tif-Fos cells (Fig 7C).
To determine whether increased expression of EGFR in Tif-Fos cells resulted in enhanced proliferation, quiescent Tif-puro and Tif-Fos cells were treated with either 10 or 100 ng of EGF per ml. EGF is a potent mitogen for human fibroblasts (9), and after 24 and 48 h, cell counts indicated that Tif-puro and Tif-Fos cells respond mitogenically to EGF in a similar manner (data not shown). However, exponentially growing cells are not dependent on EGF signaling for proliferation, since their growth was not enhanced by treatment with EGF (100 ng/ml) or, conversely, not significantly inhibited by either AG1478 (0.5 µM) or transient expression of EGFR siRNA (Fig. 7D).
EGF treatment of established rodent fibroblast cell lines results in disruption of actin stress fibers followed by morphological transformation (70). Although hff-Fos and Tif-Fos cells have a reduction in actin stress fibers compared to hff-puro and Tif-puro cells, they still have detectable stress fibers (Fig. 1B). Exposure of Tif-Fos cells to EGF (100 ng/ml) for 24 h resulted in a further reduction in actin stress fibers and a more spindle-like cell morphology, while similar treatment of Tif-puro cells with EGF had no effect on the actin cytoskeleton or cell morphology (Fig. 7E). We demonstrate that inhibition of EGFR signaling with AG1478 (1.25 µM) can reverse the loss of stress fibers observed in Tif-Fos cells in the absence or presence of EGF (Fig. 7E). Similar results were obtained for Tif-Fos cells by using either transient EGFR siRNA or pSUPER EGFR (Fig. 7F). This indicates that the consequence of EGF signaling to the actin cytoskeleton in Tif-Fos cells is different from that observed in Tif-puro cells. Of course, other changes in gene expression may contribute to the increased responsiveness of the Tif-Fos cells to EGF, in addition to increased expression of EGFR.
The EGF-induced reduction in the number of actin stress fibers and changes in cell morphology might be expected to enhance the invasiveness of hff-Fos and Tif-Fos cells in response to EGF. Inclusion of EGF (100 ng/ml) in the upper chamber of the in vitro invasion assay resulted in a twofold increase in the number of cells that invade but did not result in a significant increase in the invasiveness of the hff-puro and Tif-puro cells (Fig. 3). The loss of p16INK4a expression and inactivation of p53 did not affect the cells responsiveness to EGF-stimulated invasion (data not shown).
To determine if EGFR signaling was necessary for invasion of Tif-Fos cells, AG1478 was included in the invasion assay at concentrations that inhibit EGF stimulation of ERK phosphorylation (Fig. 7B). AG1478 (0.5 and 1.25 µM) inhibited invasion of Tif-Fos cells in a dose-dependent manner and reduced invasion to a greater extent in the presence of 100 ng of EGF per ml (Fig. 7G). Similarly, transient suppression of EGFR expression using siRNA inhibited invasion in the absence and presence of EGF (Fig. 7H). Furthermore, stable suppression of EGFR expression using pSUPER EGFR completely abolished invasion in Tif-Fos cells (Fig. 7H). This demonstrates that EGFR signaling is required for invasion of Tif-Fos cells. However, overexpression of EGFR is not sufficient to render Tif-puro cells invasive, even in the presence of EGF (data not shown).
Taken together, these results suggest that increased expression of the EGFR in human fibroblasts expressing v-Fos is necessary to maintain the invasive phenotype and validates the EGFR as a component of the AP-1-regulated multigenic invasion program.
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Gene expression profiles. Since v-Fos specifically induces invasion following expression in normal human fibroblasts, the changes in gene expression detected in Tif-Fos must account for the invasive phenotype and define the multigenic invasion program. The comparison of gene expression profiles between Tif-Fos and Tif-puro cells revealed consistent significant changes in gene expression that distinguish Tif-Fos cells from the other cells: 130 genes up-regulated and 227 genes down-regulated. The genes that were identified as differentially expressed represent the many cellular functions associated with invasion (Tables 1 and 2). Previous analyses indicate that differentially expressed genes function as part of a program and that the complete program must be intact for the cells to invade (46, 53, 54, 94).
Invasion is dependent on the increased expression of extracellular proteases and a reduction in expression of their inhibitors (15, 40, 110, 111), many of which are AP-1 regulated (17, 114). The gene expression profile of the Tif-Fos cells identifies several extracellular proteases that are up-regulated and several protease inhibitors that are down-regulated. Inhibition of AP-1 activity, which reduces the expression of proteases and increases the expression of their inhibitors, also reduces the invasiveness of the cells (19, 82, 91, 92).
More changes in gene expression in addition to proteases are necessary for AP-1-mediated invasion. Of particular note is the collection of down-regulated genes that are known tumor (oncogene) suppressor genes. Potent inhibitors of fibroblast transformation, lumican (118), fibulin 1 (75, 86), and IGFBP5 (59, 85), are expressed in mouse embryo fibroblasts that are resistant to oncogene-mediated transformation (4). Calponin 1 (100) and DOK1/p62dok (93) are also known suppressors of oncogene-mediated transformation. DAB2 is of particular interest since it suppresses signaling from the growth factor signal transduction pathway to AP-1 (33, 104) and is down regulated in a variety of human tumors (11, 23). Other known tumor suppressor genes, those for thrombospondin 1 (63, 78), RECK (69, 81, 99), TIMP1 (77), IGSF4 (25), gremlin/CKTSF1B1 (10), sFRP1 (49, 98), IGFBP7/MAC25 (96), fibronectin 1 (52, 73, 101), STAT1 (38), and FAT (21), and some purported tumor suppressor genes, those for brush-1/WASF3 (87), TES (102), and WNT5A (39), are all down-regulated in Tif-Fos cells. The number of tumor suppressor genes that are down-regulated in Tif-Fos cells and their breadth of activities (ECM components, transcription regulators, signal transducers, and protease inhibitors) reflect the complexity of the invasion program and the many aspects of cell biology that are engaged during invasion. In support of the role of AP-1 in tumor cell invasion, rather than proliferation, most of the down-regulated tumor suppressors are not direct inhibitors of the cell cycle.
Although it remains to be determined if the down-regulation of each gene is necessary for the invasive phenotype, it demonstrates that multiple suppressors of the invasive and transformed phenotype are expressed in normal fibroblasts. To the extent that each gene is a member of the multigenic invasion program, it seems unlikely that an inactivating mutation in any one of these genes would render the cells invasive or fully transformed. This implies that the down-regulation of most of these genes is the consequence of epigenetic mechanisms such as DNA methylation or histone deacetylation. v-Fos-mediated morphological transformation and invasion are known to be dependent on the activity of DNA methyltransferases and histone deacetylases (3, 71).
Many of the up-regulated genes are also associated with multiple aspects of invasion, such as ECM components and their receptors, proteases, regulators of the actin cytoskeleton, and transcription factors. Again, there are few genes directly associated with the cell cycle. Surprisingly, many known growth factors are down-regulated in Tif-Fos, perhaps accounting for their lack of independence from growth factors. However, several receptors for growth factors, e.g., EGFR (113), met (13), EphA2 (35), and EphB6 (28), that can also affect motility or invasion were significantly up-regulated in the Tif-Fos cells.
The increase in EGFR expression in Tif-Fos cells was unexpected since it has not been demonstrated in diploid human fibroblasts, although it is well established that it is often overexpressed in a variety of human tumors (117). The AP-2 binding site in the promoter region of EGFR may be responsible for phorbol myristate acetate-induced up-regulation of the EGFR (44). The transcription factor AP-2 is notably up-regulated in Tif-Fos. AP-1 also regulates EGFR expression (45, 55, 121). In Tif-Fos, either or both of AP-2 and AP-1 could account for the up-regulation of EGFR expression.
Increased expression of the EGFR is often associated with invasiveness (113). It is known to signal to the actin cytoskeleton and to stimulate cell motility and invasion. In squamous cell carcinoma-derived cell lines that overexpress the EGFR, its activity is required for cellular invasion (61). Tif-Fos cells require EGFR activity for invasion, and inhibition of tyrosine kinase activity dramatically inhibits the invasiveness of the cells in the presence or absence of added ligand. However, EGFR activity in the presence of serum is not necessary for proliferation even though EGF is mitogenic for Tif-puro and Tif-Fos cells. This suggests that increased EGFR is signaling primarily to the invasive phenotype. Contrary to expectation, the known ligands for EGFR are not expressed in Tif-Fos cells. Thus, there is no evidence that an autocrine system for invasion, functioning through ligand binding to the EGFR, occurs in Tif-Fos cells (113). However, there are multiple ways of activating the EGFR through other signaling pathways such as lysophosphatidic acid (27), integrins (67), or prostaglandins (72).
The
downstream pathways activated by the EGFR that are important for
invasion remain to be elucidated. In the simplest sense, it could be
serving as a guidance function and regulating cytoskeleton
reorganization for motility
(113), in a more complex
view, it could be performing that function as well as stimulating
changes in gene expression that further enhance invasiveness
(53). With regard to a
possible role in guidance, it has been demonstrated that in the
presence of the EGFR,
6-integrin mediates
laminin-mediated chemotaxis in fibroblasts
(58,
74). In another system,
EGFR activation stimulates the expression of
2-integrin, integrin-mediated adhesion, and
motility (83). Both
2- and
6-integrin are
up-regulated in Tif-Fos cells according to microarray analysis. The
up-regulation of
2-integrin may also contribute to
the invasiveness of the cells through the activation of its cytoplasmic
domain by R-Ras2, which is also up-regulated in Tif-Fos cells
(48).
Phosphoinositide-3-kinase catalytic subunit p110delta is up-regulated
in Tif-Fos cells and has been shown to regulate EGF-stimulated motility
in breast cancer cells by controlling the directionality and speed of
migration (84).
The changes in gene expression in human diploid fibroblasts following expression of the v-Fos oncogene must account for the increased invasiveness displayed by Tif-Fos cells. Further functional analysis will establish which differentially expressed genes contribute to the invasive phenotype and comprise the AP-1 regulated invasion program. The lack of changes in expression of genes that regulate cell cycle and the specific down-regulation of genes encoding polypeptide growth factors forms the basis of the activation of the invasive program in the absence of the proliferative program of the cells.
These results establish that activation of AP-1 through v-Fos specifically confers an invasive phenotype upon human fibroblasts that is independent of anchorage independence and cell cycle alterations normally associated with oncogenic transformation (31). The independence of invasion from these cell cycle tumor suppressor genes indicates that the invasion program can be activated in their presence, as would be expected for a normal cellular invasion program.
This work was funded by Cancer Research UK.
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