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Molecular and Cellular Biology, February 2004, p. 1560-1569, Vol. 24, No. 4
0270-7306/04/$08.00+0 DOI: 10.1128/MCB.24.4.1560-1569.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Biochemistry, St. Jude Children's Research Hospital, Memphis, Tennessee 38105
Received 20 August 2003/ Returned for modification 26 September 2003/ Accepted 14 November 2003
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Precisely how Myc induces such a wide array of biological responses is unclear, but all of the effects of Myc require its function as a basic helix-loop-helix-leucine zipper (b-HLH-Zip) transcription factor. The ability of Myc to bind to its recognition element, a CACGTG E-box (8), and to induce transcription requires dimerization with Max, a small b-HLH-Zip protein (9). The activity of the Myc-Max complex is thought to be harnessed by other b-HLH-Zip factors, the Mad proteins (2) and Mnt (or "Rox" [20, 29]), which also dimerize with Max and bind to these elements yet repress transcription through their associations with the general corepressors Sin3a and Sin3b and associated histone deacetylases (3). These findings, and the expression of some Mad proteins during differentiation (2), have suggested a model whereby activating Myc-Max complexes are antagonized by repressive Mad-Max or Mnt-Max complexes and the equilibrium between these complexes regulates cell fate. However, other alternatives are equally plausible; for example, Myc could function as an antagonist of Mad and/or Mnt and activate gene expression through the relief of active repression (4).
If Mad family members functioned to antagonize Myc, then one prediction was that their targeted deletion should release Myc activity to provoke inappropriate cell proliferation, apoptosis and, ultimately, transformation. Surprisingly, the knockouts of Mad1, Mxi1 (Mad2), and Mad3 revealed only modest and selective effects on cell differentiation rather than on cell growth or transformation (15, 35, 36). By contrast, little is known about the physiological role of Mnt, which, in contrast to Mad factors, is expressed in proliferating cells (20).
To evaluate the interplay of Myc, Mad, and Mnt in regulating transcription and cell fate, we reevaluated the mechanism by which c-Myc induces the transcription of the Ornithine decarboxylase (Odc) gene, which encodes the rate-limiting enzyme in polyamine biosynthesis. These studies pinpointed Mnt as a key regulator of Odc expression and demonstrated that Myc induces Odc transcription by relief of Mnt-mediated repression. Strikingly, knockdown of Mnt by stable RNA interference established that Mnt loss provokes the typical "Myc" response, even in cells lacking c-myc, and that Mnt behaves as a tumor suppressor.
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Plasmids, reagents, and antibodies. The vectors pRc-CMV-HA-Mnt and MSCV-IRES-GFP were kind gifts from Peter Hurlin and Elio Vanin, respectively. MSCV-Myc-ER-IRES-GFP was generated by cloning a cDNA encoding Myc-ER (from Michael Bishop) into the EcoRI site of MSCV-IRES-GFP. The MntRNAi 1-3 or control RNAi (directed against pBluescript) retroviruses were designed by PCR-SHAGging amplification and the RNAi oligo retriever program (see www.cshl.org/public/SCIENCE/hannon.html). The sequences were as follows: Mnt1, AAAAAAGCCACCCCCAGTAGCATCCCTATGCTCATCAAGCTTCATGAGCATAGAGACGCTACTGGAGGCGGCGGTGTTTCGTCCTTTCCACAA; Mnt2, AAAAAAGGAAGGCATAGTAACCATAGTCACAGGATCAAGCTTCACCCTGTGACTATGGTCACCATGCCCTCCGGTGTTTCGTCCTTTCCACAA; Mnt3, AAAAAAGCCCGGTCGCCCTCAAGCTGGCCTGTCCGCAAGCTTCCAGACAGGCCAGCCTGAGGACGACCAGGCGGTGTTTCGTCCTTTCCACAA; and pBluescript; AAAAAAAGAACAACACTCAACCCTATCCCGATCCACAAGCTTCTAGACCGAGATAGGGTTGAGTGTTGTTCCGGTGTTTCGTCCTTTCCACAA. The PCR product was cloned into the NotI site of MSCV-IRES-GFP. 4-Hydroxytamoxifen (4-HT [Sigma]) was used at 1 µM. Antibodies against c-Myc (Santa Cruz Biotechnologies), Max (Transduction Labs), Mnt (from Peter Hurlin and Robert Eisenman), Mad1 (Santa Cruz), and USF-1 (Upstate) were used for supershift analyses in electrophoretic mobility shift assays (EMSAs). Antibodies against Mnt (Santa Cruz), E2f1 (Transduction Labs), p27Kip1 (Transduction Labs), ODC (from Anthony Pegg), p53 (Calbiochem), p19Arf (Upstate), caspase-9 (Cell Signaling), and Bcl-X1. (Transduction Labs) were used for immunoblotting.
Viability and apoptosis assays. To assess the effects of Mnt knockdown on cell survival, green fluorescent protein (GFP)-only- and MntRNAi-expressing cells were seeded in 100-mm plates with 5 x 105 cells. After 24 h, the cells were shifted to medium containing 0.1% fetal calf serum and harvested at specific intervals, and their viability was determined by trypan blue dye exclusion. Apoptosis was determined by propidium iodide staining and annexin V-Fluorescein isothiocyanate staining, which was performed as described by the manufacturer (BioWhittaker Inc. Walkersville, Md.). Briefly, 2 x 105 to 5 x 105 cells were washed in phosphate-buffered saline and resuspended in 190 µl of binding buffer (10 mM HEPES [pH 7.4], 140 mM NaCl, 2.5 mM CaCl). A 10-µl portion of annexin V-fluorescein isothiocyanate was added, the mixture was incubated for 10 min, and the cells were washed once and resuspended in 190 µl of binding buffer. To this was added 10 µl of 20-µg/ml propidium iodide stock solution. The cells were then analyzed for the presence of apoptotic cells by fluorescence-activated cell sorter analysis.
RNA analysis. RNA was extracted using Trizol (Invitrogen). Northern blot analysis was performed as described previously (31). Real-time PCR was performed using the Taq-Man EZ reverse transcription-PCR core kit as described by the manufacturer (Applera, Inc.). Primer and probe sequences are available on request.
Odc promoter analyses.
EMSAs were performed using extracts as described (24). Chromatin immunoprecipitations (ChIP) were performed on serum-starved and -stimulated BALB/c-3T3 fibroblasts by using a kit from Upstate and the antibodies described above. The primers used encompassed both E-boxes of the Odc gene. Primer sequences are available on request. Transient transfections of BALB/c-3T3 cells were performed using Lipofectamine 2000 (Invitrogen). The Odc promoter-reporter constructs (ODC
Luc and ODC
Luc5A) driving the expression of firefly luciferase have been described previously (32).
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FIG. 1. (A and B) Mnt-Max is the predominant complex detected in EMSA using either Odc E-box1 (A) or E-box2 (B and C) probes, using extracts from proliferating FDC-P1 myeloid cells (A) growing (+ Serum) or quiescent (- Serum) BALB/c 3T3 fibroblasts (B). Arrowheads, diamonds, and circles indicate Mnt-Max, USF, and Max-Max complexes, respectively, as established by supershift analyses. Results using E-box probe 1 or 2 were comparable for all cell extracts (data not shown). (C) c-myc loss enhances Mnt-Max DNA binding activity in ES cells. EMSA was performed with extracts from the indicated ES cells.
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FIG. 2. Myc activates Odc transcription by relieving Mnt-mediated repression. (A) Odc expression in BALb/c-3T3 cells is serum dependent. Fibroblasts were cultured in the presence (lane 1) or absence of serum for 1, 2, and 3 days (lanes 2 to 4). After 3 days of starvation, fresh medium containing serum was added for 3 h (lane 5). Northern blot analysis was performed using a probe directed against Odc. 18S rRNA served as loading control. (B) Mnt-Max complexes occupy the Odc E-boxes in quiescent BALB/c-3T3 fibroblasts and are displaced by c-Myc-Max complexes in serum-stimulated cells. ChIP assays of serum-starved (2 days) or restimulated (for 3 h) BALB/c-3T3 cells were performed using antibodies directed against Max, c-Myc, or Mnt. The primers used for the PCR encompass the intronic E-boxes of the Odc gene. (C) Mnt represses the Odc promoter, and Mnt repression is relieved by Myc. BALB/c-3T3 cells infected with a Myc-ER-expressing retrovirus (MSCV-Myc-ER-IRES-GFP) were cotransfected with Odc promoter-luciferase constructs (containing intact [Odc-Luc] or mutated [Odc-luc5A] E-boxes) together with a Renilla luciferase control plasmid (pRL-SV40 [Promega]) and, where indicated, a Mnt expression vector (pRc-CMV-HA-Mnt). Transfections were balanced for DNA and promoter content by using the empty pRc vector plasmid. Myc-ER was activated by adding 4-HT for 24 h. Luciferase activity was determined using a luminometer. Results shown are the mean of triplicate assays and are representative of three independent experiments.
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Knockdown of Mnt expression accelerates growth, triggers apoptosis, and provokes transformation. Collectively, these data were consistent with a model whereby Myc activates Odc through the displacement of Mnt, which binds to Odc E-boxes to repress transcription. If this scenario was generally true, then the effects of Mnt loss should essentially mimic those of Myc overexpression. To address this issue, we generated a retroviral vector (MSCV-MntRNAi-IRES-GFP) that expresses a short hairpin RNA (shRNA) that targets both mouse and rat Mnt mRNA, driven by the U6 RNA polymerase III promoter (19). Two fibroblast cell lines, mouse BALB/c-3T3 (30) and rat HO.15 c-myc-/- cells (27), and early-passage (passage 3) mouse embryonic fibroblasts (MEFs) were transduced with MSCV-MntRNAi-IRES-GFP virus, which also expresses the gene for GFP by virtue of an internal ribosome entry site (IRES). As a control, these cells were also infected in parallel with a MSCV-IRES-GFP virus and infected cells were sorted by flow cytometry for GFP. Using this strategy, there was a specific ablation of Mnt protein levels in all three MntRNAi-expressing fibroblast strains (see Fig. 7A).
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FIG. 7. Mnt knockdown triggers "Myc" transcriptional programs. (A) Immunoblot analyses of the indicated fibroblast strains infected with control (GFP) or MntRNAi-expressing retroviruses. The anti-Mnt and anti-ODC immunoblots demonstrate that the MntRNAi indeed ablates Mnt expression and up-regulates ODC. The absence of ODC and E2f1 signals in the c-myc-/- cells appears to reflect the inability of these antibodies to recognize rat ODC and E2f1. In addition, Mnt loss was associated with a marked down-regulation in levels of p27KipI and in MEFs with an up-regulation of E2f1. (B) Northern blot analysis demonstrates that Odc is up-regulated by MntRNAi in all three fibroblast strains. Evaluation of 18S rRNA levels served as a loading control. (C) The p19Arf-p53 apoptotic pathway and the Bcl-XL apoptotic pathway are triggered by Mnt loss. Knockdown of Mnt was associated with an increase in p53 levels in all fibroblasts and with the induction of Arf in MEFs. The loss of Mnt was also associated with the activation of caspase-9, since larger (inactive) proenzyme form of caspase-9 was lost in MntRNAi-expressing fibroblasts. Again, the absence of caspase-9 protein in the c-myc-/- cells may reflect the inability of this antibody to recognize rat caspase-9. Bcl-XL protein levels were dramatically reduced in all MntRNAi-expressing fibroblast strains.
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FIG. 3. Knockdown of Mnt by stable RNAi accelerates cell proliferation. (A) Morphological changes induced by MntRNAi expression in MEFs, BALB/c-3T3 cells, and c-myc-/- HO.15 fibroblasts are shown. (B) Acceleration of cell proliferation by ablation of Mnt is independent of c-myc but requires E2f1. Growth rates of the indicated MntRNAi-expressing cells were compared to GFP-only expressing fibroblasts.
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FIG. 4. Mnt knockdown triggers apoptosis. (A) The indicated cells were shifted to medium containing 0.1% fetal calf serum, and their viability was determined by trypan blue dye exclusion. A representative experiment performed in triplicate is shown. (B) Apoptosis was determined by FACS analysis of annexin V-positive, propidium iodide-stained cells 48 h after serum depletion. The percentages of annexin V-positive cells are given in the quadrants (early apoptotic, lower right panels; late apoptotic, upper right panels). PE, phycoerythrin.
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FIG. 5. Phenotypes observed in MEFs on Mnt knockdown are not due to general effects of expressing shRNAi. (A) Immunoblot analyses for Mnt of MEFs infected with control (MSCV-pBlueRNAi-IRES-GFP) or three different MSCV-MntRNAi-IRES-GFP-expressing retroviruses. ß-Actin levels were assessed as a control. (B) MEFs expressing any of the three MSCV-MntRNAi-IRES-GFP retroviruses displayed accelerated rates of proliferation compared to MEFs expressing the MSCV-pBlueRNAi-IRES-GFP retrovirus. (C) MEFs expressing any of the three MSCV-MntRNAi-IRES-GFP retroviruses, but not those infected with the retrovirus encoding MSCV-pBlueRNAi-IRES-GFP, undergo rapid apoptosis following serum withdrawal.
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FIG. 6. Mnt knockdown provokes transformation in conjunction with activated Ha-Ras. (A) A representative field of soft-agar assays of MEFs expressing GFP, GFP plus Ras, MntRNAi, and MntRNAi plus Ras are shown. MntRNAi-expressing MEFs were capable of growing in an anchorage-independent manner, although colonies were reduced 10- to 20-fold in their numbers and were much smaller than colonies generated by MEFs expressing both Ha-Ras and MntRNAi. (B) MEFs expressing both Ras and MntRNAi are tumorigenic in immunocompromised Nu/Nu mice (n = 5 for each group). BALB/c-3T3 fibroblasts expressing MntRNAi alone were also tumorigenic in this assay (n = 5).
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Mnt loss triggers "Myc" transcriptional programs. The surprising similarities in the biological responses to knockdown of Mnt versus Myc overexpression, even in fibroblasts lacking c-myc, suggested that gene programs regulated by Myc might be due to relief of Mnt-mediated repression. We therefore assessed pathways triggered by Myc in fibroblasts expressing MntRNAi. Indeed, the ablation of Mnt protein expression was similar to the effects of Myc in inducing E2f1 expression in MEFs (5) and in inducing Odc in all three fibroblast strains (Fig. 7A and B). Previously it has been established that the ability of Myc to provoke accelerated proliferation is E2f1 dependent (5). We therefore transduced E2f1-deficient MEFs with MSCV-MntRNAi-IRES-GFP virus or control GFP-only-expressing virus and sorted GFP-expressing cells by FACS. Strikingly, knockdown of Mnt expression in E2f1-/- MEFs (data not shown) failed to alter their morphology or to provoke accelerated growth (Fig. 3C). Therefore, the effects of Mnt knockdown on cell proliferation are, as in the scenario of Myc overexpression, E2f1 dependent. Finally, another hallmark of the ability of Myc to provoke accelerated cell cycle traverse is the down-regulation of the universal cyclin-dependent kinase inhibitor p27KipI (39), and all three fibroblast strains expressing MntRNAi displayed markedly reduced levels of p27KipI (Fig. 7A).
The induction of apoptosis in MntRNAi-expressing fibroblasts when deprived of serum suggested that knockdown of Mnt may provoke apoptosis via typical mediators of Myc-induced cell death, for example by activating the Arf-p53 tumor suppressor pathway (40) and/or by suppressing the expression of the anti-apoptotic Bcl-XL protein (13). Indeed, in MEFs expressing MntRNAi, Arf and p53 expression were highly elevated, and in all three MntRNAi-expressing fibroblast strains, the expression of Bcl-XL protein was effectively abolished (Fig. 7C). Myc is also capable of stabilizing and activating p53 in the absence of Arf (23) and in c-myc-/- Rat1a fibroblasts and immortal BALB/c-3T3 fibroblasts Mnt RNAi expression was associated with massive increases in p53 protein levels (Fig. 7C). Thus, knockdown of Mnt also mimics Myc in its ability to regulate apoptotic pathways.
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Stable RNA interference targeting Mnt indeed directly supports the notion that Odc is regulated by Mnt-mediated transrepression, and promoter-reporter assays established that Myc can relieve this suppression. EMSA and ChIP paint an interesting picture of how Odc regulation is orchestrated. EMSA established that the abundance of the Mnt-Max complex is not regulated by the proliferative state of fibroblasts or myeloid cells, but ChIP revealed that this complex is displaced by a c-Myc-Max complex. The binding of the c-Myc-Max complex thus may activate Odc, and by inference its other targets, by performing two functions: actively displacing Mnt and relieving active repression and simultaneously recruiting the transcriptional co-activators such as TRRAP and associated histone acetylases (28) (Fig. 8). However, a totally unexpected finding was that Mnt ablation essentially mimicked many of the transcriptional programs provoked by Myc and that this could occur even in cells lacking all forms of Myc. This would then argue that Mnt-mediated repression is the focal point for transcriptional control (Fig. 8) and that Myc oncoproteins really activate transcription indirectly by effectively blocking Mnt functions.
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FIG.8. Myc antagonizes Mnt to regulate cell fate. (A) (Left) Conventional models of transcriptional regulation by the Max network. In these models, Mad and Mnt work as antagonists of Myc. (Right) Alternatively, the Myc-Max complex can activate promoters by direct binding to E-boxes not previously occupied by other complexes. (B) In the revised model, Myc functions as an antagonist of Mnt, since Mnt loss triggers most of the"Myc" response, including Myc's transcription targets (e.g., Odc), apoptosis, accelerated proliferation, and transformation. (Right) In this scenario Myc may operate in two steps to induce its targets. First, it may displace Mnt-Max complexes from response elements, thus relieving repression. Second, when bound the Myc-Max complex may transactivate the gene. (Left) The fact that Mnt loss can activate some "Myc" transcription targets even in cells lacking all forms of Myc indicates that Myc binding may not be required to activate some of its targets, which instead are controlled through active repression.
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Surprisingly modest phenotypes have been observed in the mouse knockouts of the Mad family members of the Max network. For example, hematopoietic cells from Mad1 knockout mice do exhibit an increased sensitivity to apoptosis following growth factor withdrawal ex vivo, yet Mad1 loss does not alter the hematopoietic compartment in vivo (15). Further, MEFs from Mxi1-deficient mice are more prone to transformation, yet this is manifest only in the presence of both activated Ras and Myc (36). Finally, Mad3-deficient thymocytes and neural progenitor cells exhibit increased sensitivity to DNA damage (35), a phenotype also manifested following Myc overexpression (26). However, none of these knockouts come close to having the profound effects observed following Mnt knockdown, which in many respects appears to phenocopy the effects of Myc overexpression as seen in cancer. Indeed our studies are largely supported by the very recent and initial characterization of the mouse Mnt knockout, since MEFs from these mice display accelerated growth and apoptosis and since loss of Mnt can lead to breast cancer (21). However, there are important differences in the cast of "Myc" targets expressed in MEFs from these mice and those expressed in our Mnt knockdown cells, suggesting that some level of compensation for Mnt loss may be operational during development (as would be expected for a proapoptotic signal).
Most importantly, the results presented here challenge many of the conventional notions of how Myc functions to regulate gene transcription, cell proliferation, apoptosis, and transformation. Heretofore, the Mad and Mnt transcriptional repressors have been suggested to antagonize Myc (Fig. 8A). However, the data herein suggest that it may be Myc that functions as an antagonist, by specifically relieving Mnt-mediated repression (Fig. 8B). These results specifically support a model whereby the function of Myc as an oncogene relies on its ability to block Mnt activity. At face value, these findings would predict that Mnt is a bona fide tumor suppressor and that it should be inactivated in human cancers. Here we establish that this is probably true for every tumor that overexpresses Myc. Alternatively, the current failure to detect direct inactivation of MNT in human tumors (37, 38) could reflect the profound apoptotic response observed following Mnt loss, since, for example, knockdown of Mnt is more lethal than Myc overexpression in primary hematopoietic progenitors (J. A. Nilsson and J. L. Cleveland, unpublished data). Finally, this model also explains why Myc overexpression is such a pervasive event in cancerincreasing the thresholds of Myc would specifically override the transcriptional repression and tumor suppressor functions of Mnt.
This work was supported by National Institutes of Health grants DK44158 and CA100603 (to J.L.C.), by Cancer Center CORE grant CA21765, and by the American Lebanese Syrian Associated Charities (ALSAC). J.A.N is a recipient of the George J. Mitchell endowed fellowship from ALSAC. U.K. is a fellow of the Deutsche Forschungssemeinschoff.
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