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Molecular and Cellular Biology, May 2004, p. 3957-3971, Vol. 24, No. 9
0270-7306/04/$08.00+0 DOI: 10.1128/MCB.24.9.3957-3971.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Division of Basic Science, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111,1 Department of Biochemistry, Dartmouth Medical School, Hanover, New Hampshire 037552
Received 13 October 2003/ Returned for modification 1 December 2003/ Accepted 9 February 2004
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In mitosis, the activities of the mitotic spindle are critical to drive the physical movements of cellular matter that allow cells to undergo partition. Defects in the formation or function of the mitotic spindle are known to cause abnormal changes in tension at the point of microtubule-kinetochore connection that induce a sensitive spindle checkpoint involving the activation of the BubR1/Bub3/Mad2/Cdc20 protein complex (reviewed in references 5 and 77 and in many other places). In the context of a triggered spindle checkpoint, the anaphase-promoting complex/cyclosome is not activated. As the anaphase-promoting complex/cyclosome has numerous targets in mitosis whose degradation is required for passage beyond prometaphase, including cyclin A (11), and metaphase, including securin (24) and cyclin B (26, 52, 69), depending on the time and source of checkpoint activation and anaphase-promoting complex/cyclosome inhibition, cells with triggered checkpoints may arrest at various points in M phase. Extensive experimentation in many laboratories has shown that spindle checkpoint-induced arrest is protective against cellular death in mitosis.
Some recent studies have begun to analyze the means of coupling between checkpoint activation and antiapoptotic consequences. As one example, depletion of the kinetochore-spindle linker protein hNuf2 leaves intact a spindle checkpoint and causes cell cycle arrest at prometaphase; however, hNuf2-depleted cells are subsequently unable to recover from this arrest and undergo extensive apoptosis (10), suggesting that hNuf2 signals in a critical way to the apoptotic machinery. For this reason, it has been suggested that hNuf2 might be an attractive candidate for the development of a targeted therapeutic agent (10), as its inhibition may provide a means of modulating the protective effect of the spindle checkpoint in some cancer cells.
We were interested in identifying novel human genes that might play a role in these important regulatory functions. To this end, we adapted a cross-species functional complementation strategy. Yeasts have been used for more than a half-century as model organisms to study many cellular processes. Although higher eukaryotic signaling networks are much more complex than those found in Saccharomyces cerevisiae, research to date strongly supports the idea that they use similar strategies and components: this conservation of important regulatory factors has permitted the design of powerful high-throughput screens that allow the detection of higher eukaryotic genes with on-signaling pathways of interest, based on their ability to complement or functionally perturb evolutionarily conserved growth control pathways (12, 38, 39). In 1992, Gimeno et al. described the ability of diploid S. cerevisiae grown on low-nitrogen medium to convert their budding pattern from vegetative to pseudohyphal (23). Analysis of the transition from vegetative to pseudohyphal growth in S. cerevisiae has subsequently been well established as a useful model for analysis of the coordination of the cell cycle in the context of diverse environmental and internal cues (reviewed in references 33 and 51). Mechanistically, formation of pseudohyphae has been shown to be stimulated by activation of Ras and downstream signaling effectors (23, 44, 58, 60) and, notably, to arise from direct perturbations of proteins that alter cell cycle dynamics (2, 35, 72).
In this study, we provide the initial description of the human enhancer of invasion-cluster (HEI-C) protein, which we isolated based on its ability to induce yeast agar invasion, a characteristic of pseudohyphal growth. HEI-C is a coiled-coil protein with no significant homology to proteins of known function. During mitosis, HEI-C is localized to and biochemically associates with the mitotic spindle. We demonstrate that HEI-C is an essential factor for successful completion of mitosis, as depletion of HEI-C results in mitotic delay and a high frequency of cell death. Cells depleted of HEI-C by transfection of a targeted short interfering RNA (siRNA) manifest a reduced number of cells in the G2/M compartment (as measured by fluorescence-activated cell sorting [FACS] analysis), concomitant with the appearance of a sub-G0 peak. Notably, videomicroscopic analysis of synchronized cells depleted of HEI-C demonstrates a high frequency of cellular disintegration or stasis occurring at the metaphase-anaphase transition. Analysis of HEI-C-depleted cells for annexin staining and poly(ADP ribose) polymerase (PARP) cleavage confirms a progressive increase in the percentage of apoptotic cells following HEI-C depletion. HEI-C-depleted cells appear to have normal checkpoint function, as they arrest normally following both hydroxyurea and nocodazole blocks. These and other results indicate that HEI-C provides a novel and critical input into mitosis.
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/a trp1/trp1; gift of C. Gimeno), a diploid strain derived from the parent strain
1278b (23, 45). Cells were plated at a density of approximately 60,000 cells per 10-cm plate of complete minimal medium lacking tryptophan and with 2% galactose. Plates were maintained at 30°C for approximately 60 h and subsequently washed with vigorous blasts of distilled water. Highly invasive patches observed on plates lacking tryptophan with galactose were cored with the narrow end of a Pasteur pipette and transferred to plates lacking tryptophan and with 2% glucose. These colonies were streaked to single colonies on fresh plates lacking tryptophan and with glucose and reassayed for the invasive phenotype on plates lacking tryptophan and with galactose. Plasmid DNA was isolated from invasive colonies, retransformed into naïve CGX74, and reassayed for enhancement of filamentation and agar invasion versus the vector JG4-4 on plates lacking tryptophan and with galactose and on SLAGR (low-nitrogen medium with 2% galactose and 1% raffinose [23]). The cDNAs were restriction mapped and sequenced. 5' rapid amplification of cDNA ends was performed with the GENERACER kit (Invitrogen, Carlsbad, Calif.); total RNA from HeLa cells was isolated and used as the substrate with HEI-C probes centered around the first coding ATG. The products were cloned and sequenced. The longest clone of HEI-C obtained in the pseudohyphal screen was 1,097 bp, including 834 bp of putative coding sequence. Exhaustive 5'-rapid amplification of cDNA end PCR on HeLa total RNA led to identification of 14 bp of additional 5' sequence containing an in-frame stop codon, confirming isolation of the full-length coding sequence for HEI-C within the original clone identified in the agar invasion screen.
Filamentation and agar invasion assays. CGX74 and CG188, isogenic diploid and haploid strains, respectively, were transformed with the indicated clones. To assay for invasion, transformants were replica plated on plates lacking tryptophan and uracil with glucose or lacking tryptophan and uracil and with galactose and raffinose and incubated at 30°C for 24 h. Plates were photographed prior to washing, subsequently washed with several blasts of distilled water, and rephotographed. To assay for filamentation, transformants were streaked onto SLAGR medium which had been freshly poured onto sterilized glass slides. After 24 h at 30°C colony images were captured at 20x on a Nikon microscope with a charge-coupled device camera.
Plasmids. All clones obtained from the screen are in the yeast galactose-inducible vector pJG4-4. Four clones of HEI-C were isolated, including three identical long clones designated HEI 8, HEI 15, and HEI 21 (encoding amino acids 1 to 278), and one truncated clone designated HEI 22 (amino acids 77 to 278). Three clones of PRK2 were isolated, encompassing the C-terminal region of the protein, including the kinase domain, HEI 16 (amino acids 505 to 984), HEI 7, and HEI 14 (amino acids 577 to 984). The HEF1 clone obtained in the screen (HEI 11) comprises the C-terminal domain of HEF1 (amino acids 660 to 834), similar to the previously described clone HEF1-C (34). The HEI 15 clone (nucleotides +1 to 837 of HEI-C, encoding amino acids 1 to 278) was first cloned into pUC119 by PCR to generate a cDNA with a 5' MunI site and a 3' XhoI site. This insert was subcloned into pcDNA3 to make pcDNA3/HEI-C. Note that HEI-C has been assigned the official symbol CCDC5 by the International Radiation Hybrid Mapping Consortium.
Antibodies.
An antipeptide antibody to the carboxy-terminal 16 amino acids of HEI-C (amino acid sequence SSIEAELTRRVDMMEL) was generated. The peptide was conjugated to keyhole limpet hemocyanin and used as an immunogen to produce polyclonal rabbit antiserum (Research Genetics, Inc., Huntsville, Ala.). HEI-C antibodies were affinity purified with the16-mer peptide as previously described (34). For Western and immunofluorescence analysis, anti-HEI-C antibodies were used at a 1:100 dilution. Monoclonal anti-
-tubulin antibodies (clone DM1A; Sigma, St. Louis, Mo.) were used at a 1:2,000 dilution for immunofluorescence. E-cadherin antibodies (BD Transduction Labs, San Diego, Calif.) were used at a 1:100 dilution for immunofluorescence. Antibodies to gamma-tubulin were from Sigma. Two anti-PARP antibodies were used, p85-PARP (Promega, Madison, Wis.) and anti-PARP (Calbiochem, San Diego, Calif.). Dichlorotriazinyl-amino-fluorescein goat anti-mouse immunoglobulin (Jackson Immunological Laboratories, West Grove, Pa.) and rhodamine-X goat anti-rabbit immunoglobulin (Molecular Probes, Eugene, Oreg.) secondary antibodies were used at 1:500 for immunofluorescence. For Western blotting, secondary horseradish peroxidase-conjugated sheep anti-rabbit immunoglobulin antibody (Amersham, Piscataway, N.J.) was used at a dilution of 1:4,000.
Cell culture. MCF7 (human epithelium-like breast adenocarcinoma), HeLa (human epithelial adenocarcinoma), U2OS (human osteosarcoma) cells, and COS7 (simian virus 40-transformed African Green monkey kidney) cells were maintained in Dulbecco's modified Eagle's medium plus 10% fetal bovine serum supplemented with penicillin and streptomycin. MDCK (canine kidney epithelial, clone 8; gift of W. J. Nelson) cells were maintained in Dulbecco's modified Eagle's medium, low glucose, supplemented with 10% fetal bovine serum. For cell synchronization, cells were blocked with nocodazole by treatment with 1 µM nocodazole for 15 h. Cells were harvested by mitotic shake off, washed, and lysed or fixed for immunofluorescence (see below). For cell synchronization, double thymidine block, nocodazole arrest, and hydroxyurea treatment were evaluated; the last was consistently the least toxic and most effective. Cells treated with hydroxyurea were treated with 2 mM hydroxyurea for 20 h. After 20 h, cells were either harvested (see below) or washed twice with medium minus drug and released into the cell cycle.
siRNA transfection. siRNA oligonucleotides were designed according to the manufacturer's guidelines (www.dharmacon.com). RNA oligonucleotides HEIC.A (AAGGAUACCUCGCUAGCUAGU) or a scrambled oligonucleotide control were transfected with Oligofectamine (Invitrogen) according to the manufacturer's instructions. For immunofluorescence, coverslips in six-well dishes were transfected with 80 pmol of RNA duplex per well. For FACS analysis, cells were plated in a 10-cm dish and transfected with 150 pmol of RNA duplex. Cells were processed for analysis 24 h after transfection. The degree of depletion of HEI-C was measured by use of NIH Image to quantitate scanned images of Western blots with HEI-C-specific antibodies, with protein levels normalized by analysis of actin controls.
Northern analysis. An oligonucleotide probe based on the HEI-C coding sequence (5' TTT TAG AAA GTC CAT GTT CTG ACG ACG 3') was 5'-end labeled and used to probe a multitissue Northern blot containing polyadenylated mRNA (Clontech, Palo Alto, Calif.).
Western analysis. Cells were lysed in radioimmunoprecipitation assay (RIPA) buffer supplemented with protease and phosphatase inhibitors (150 mM NaCl, 50 mM Tris [pH 8.0], 1% IGEPAL, 0.5% deoxycholate, 0.1% sodium dodecyl sulfate [SDS], 0.1 mg of aprotinin per ml, 0.1 mg of leupeptin per ml, and 1 mM orthovanadate). Analysis of proteins by Western blotting was performed by standard methodology. Results of Western analysis were visualized with chemoluminescence (New England Nuclear, Boston, Mass.).
Immunofluorescence. Three different fixation-permeabilization protocols were followed; unless otherwise indicated, all manipulations were carried out at room temperature. For paraformaldehyde fixation, cells on coverslips were washed with phosphate-buffered saline (PBS) and then incubated in 4% paraformaldehyde prepared in PBS (pH 7.2) for 10 min. The cells were permeabilized in PBS containing 0.2% Triton X-100 for 5 min. The cells were next washed with PBS plus 0.2% bovine serum albumin and incubated with the indicated antibody in PBS plus 0.2% bovine serum albumin for 1 h. The coverslips were then washed three times in excess PBS plus 0.2% bovine serum albumin, and secondary antibodies were added at the indicated concentrations for 1 h. The coverslips were washed as before and mounted with Vectashield mounting medium (Vector Labs, Burlingame, Calif.). For preextraction and methanol fixation, samples were preextracted by a method similar to that of O'Connell and Wang (53) by incubation in PHEM buffer containung 100 mM PIPES piperazine-N,N'-bis(2-ethanesulfonic acid) (PIPES, pH 6.9), 25 mM HEPES (pH 6.9), 1 mM EGTA, and 2 mM MgSO4 plus 0.02% Triton X-100 and 5 µM paclitaxel (Sigma) for 1 min. The cells were subsequently fixed in methanol at 20°C for 5 min prior to incubation with antibodies as described above. For the 20°C methanol fixation, coverslips were incubated in methanol at 20°C for 10 min and incubated with antibodies as described above. Images of cells were captured with a spinning-disk confocal scanning head (Perkin-Elmer, Wellesley, Mass.) equipped with a triple laser for multichannel fluorescent acquisition mounted on an Eclipse TE2000-S inverted microscope (Nikon). Images were further configured with Adobe Photoshop7.0 software.
Microtubule pulldown. Microtubules were polymerized from purified tubulin (Molecular Probes) by incubation in G-PEM buffer (100 mM PIPES [pH 6.8], 1 mM EGTA, 1 mM MgSO4, 1 mM GTP, and 30% glycerol) at 37°C for 10 min and with a subsequent addition of paclitaxel (Sigma) to a final concentration of 10 µM. HeLa cells were lysed by Dounce homogenization in PHEM buffer plus 0.1 mg of aprotinin per ml, 0.1 mg of leupeptin per ml, and 1 mM orthovanadate. The cell lysate was precleared by centrifugation at 52,000 x g for 1 h at 4°C. The supernatant was incubated for 30 min at 37°C with 5 µg of polymerized microtubules. The reactions were layered on a 15% sucrose solution in PB buffer (80 mM PIPES [pH 6.9], 1 mM EGTA, 1 mM CaCl2) and centrifuged at 30,000 x g for 30 min at room temperature. Pellets were resuspended in PHEM buffer and stored with their supernatants at 20°C until use.
Preparation and immunodepletion of mitotic extracts.
Mitotic extracts from HeLa cells were prepared according to Gaglio et al. (19). HeLa cells were synchronized in the cell cycle by double block with 2 mM thymidine. Following release from thymidine block, the cells were allowed to grow for 6 h, and then nocodazole was added to a final concentration of 40 ng/ml. The mitotic cells that accumulated over the next 4 h were collected by mitotic shake off and incubated for 30 min at 37°C with 20 µg of cytochalasin B per ml. The cells were then collected by centrifugation at 1,500 rpm and washed twice with cold PBS containing 20 µg of cytochalasin B per ml. Cells were washed one last time in cold KHM buffer containing 20 µg of cytochalasin B per ml and finally Dounce homogenized (tight pestle) at a concentration of
3 x 107 cells/ml in KHM buffer containing 20 µg of cytochalasin B per ml, 20 µg of phenylmethylsulfonyl fluoride per ml, and 1 µg each of chymostatin, leupeptin, antipain, and pepstatin per ml. The crude cell extract was then subjected to sedimentation at 100,000 x g for 15 min at 4°C. The supernatant was recovered and supplemented with 2.5 mM ATP (prepared as Mg2+ salts in KHM buffer) and 10 µM taxol, and assembly of mitotic asters was induced by incubation at 30°C for 30 to 60 min. Samples were processed for immunofluorescence as previously described (19). The remainder of the extract containing the assembled mitotic asters was sedimented at 10,000 x g for 15 min at 4°C. The supernatant and pellet fractions were recovered and solubilized in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer for immunoblot analysis.
Immunodepletion of the extract prior to aster assembly was carried out with
50 µg of either HEI-C affinity-purified antibodies or preimmune rabbit immunoglobulin G. Each antibody was adsorbed onto 25 µl of protein A-conjugated agarose (Boehringer Mannheim, Indianapolis, Ind.). The antibody-coupled agarose was washed in KHM buffer and then packed by centrifugation to remove the excess fluid. Half the antibody-coupled agarose was resuspended with the mitotic extract and incubated with agitation for 1 h at 4°C. Following this incubation, the agarose was removed from the extract by sedimentation at 15,000 x g for 10 s and saved. Next, the extract was recovered and used to resuspend the other half of the antibody-coupled agarose, and another incubation was performed with agitation for 1 h at 4°C. Following this incubation, the agarose was removed by sedimentation at 15,000 x g for 10 s and pooled with the agarose pellet from the initial depletion reaction. The depleted extract was recovered, and microtubule polymerization was induced by the addition of taxol and ATP and incubation at 30°C for 30 to 60 min.
Video microscopy. Cells were blocked in hydroxyurea as described above and released into drug-free medium. Cells were observed with a TE 2000-S inverted microscope (Nikon) equipped with a homemade environmental stage controlling temperature, humidity, and CO2 levels and a Photometrics Quantix cooled charge-coupled device camera. Phase contrast images were obtained at 4-min intervals for 24 to 48 h after release from cells transfected with a control siRNA or the HEIC.A siRNA (see above), and processed with ISEE Inovision software. The movies were analyzed with Quicktime and Excel software.
FACS analysis. Samples were harvested by combining the floating cells in the culture medium with the adherent cells detached with trypsin-EDTA, and this cell suspension was subsequently centrifuged at 1,500 rpm for 5 min at 4°C. Cells to be stained with propidium iodide were fixed in 20°C 70% ethanol overnight prior to staining. Cells were then washed twice with ice-cold PBS and centrifuged at 1,500 rpm for 5 min at 4°C. Cell pellets were resuspended in 500 µl of propidium iodide stain (38 mM sodium citrate, 50 µg of propidium iodide per ml, 20 µg of RNase A per ml) and incubated for 30 min at 37°C in the dark. Live-cell annexin and propidium iodide staining was accomplished with the Apo-Alert annexin V-EGFP apoptosis kit (BD-Clontech, Palo Alto, Calif.), as per the manufacturer's instructions. A Becton Dickinson FACScan coupled with CellQuest software was used to obtain FACS data. The FACS data were subsequently analyzed with FlowJo software (TreeStar, Ashland, Oreg.).
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Pseudohyphal growth in S. cerevisiae can be induced through stimulation of multiple distinct signaling pathways, including modulation of the STE mitogen-activated protein kinase cascade (as with HEF1), direct modulation of cell cycle compartmentalization (as with HEI10), or through alternative mechanisms, as reviewed in reference 61. We comparatively analyzed the effect of the HEF1, HEI-C, and PRK2 isolates on induction of agar invasion and pseudohyphal growth. The clones of HEI-C, HEF1, and PRK2 isolated in the screen induced agar invasion on rich medium (Fig. 1A) and enhanced filamentation on low-nitrogen medium in diploids (Fig. 1B). However, PRK2 and HEI-C additionally enhanced invasiveness on rich medium and filamentation on low-nitrogen medium in haploids, while the HEF1 did not (Fig. 1A and B). This result suggested that PRK2 and HEI-C are likely to be mediating these phenotypes through activation of different pathways than HEF1. As the PRK2 protein has already been well studied, we focused further efforts on HEI-C.
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FIG. 1. HEI-C causes invasive and filamentous growth in S. cerevisiae. (A) Assay for invasive growth. Diploid CGx75 or isogenic haploid CG188 S. cerevisiae strains were transformed with plasmids isolated in the library screen expressing HEF1 (amino acids 660 to 834), PRK2 (amino acids 505 to 984), a kinase dead mutant of the PRK2 clone (PRK2-KD) or HEI-C (amino acids 1 to 278, full-length), and two independent transformants replica plated onto plates lacking uracil and tryptophan and with glucose (gene expression off) or lacking uracil and tryptophan and with galactose (gene expression on). After 24 h of growth, the plates were photographed (prewash), washed with running distilled water, and rephotographed (postwash). (B) Assay of filamentous growth. Diploid CGx75 or isogenic haploid CG188 S. cerevisiae strains were transformed with the HEF1, PRK2, PRK2.KD, or HEI-C clones isolated in the invasive screen and streaked onto SLAGR low-nitrogen medium poured on glass slides. After 24 h of growth, the filamentous phenotype was recorded. (C) Comparison of human HEI-C to rat HEI-C and of protein sequences translated from a compiled mouse EST clone, a bovine EST, a compiled chicken EST, a frog EST, and a compiled zebra fish EST demonstrates sequence homology. Identical residues are shaded and boxed; the bottom line of the sequence is the consensus.
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HEI-C is abundantly expressed in mammalian cells. The HEI-C mRNA is readily detectable in multiple human tissues by Northern analysis of polyadenylated mRNA (Fig. 2A). A single transcript of approximately 1.2 to 1.3 kb was detected in all tissues tested and was most abundant in pancreas, heart, liver, kidney, and muscle. Supporting this indication of abundance, the HEI-C transcript is well represented among expressed sequence tag (ESTs) in GenBank derived from sequencing of libraries prepared from many different tissue sources (results not shown). Affinity-purified antibodies generated to a peptide encoding the 16 carboxy-terminal amino acids of HEI-C, conserved in HEI-C from multiple species, reacted with a single polypeptide of approximately 32 kDa in HeLa, MDCK, COS7, and MCF7 cells (Fig. 2B). In mammalian and S. cerevisiae cells overexpressing HEI-C, the protein product of the isolated cDNA comigrated with this endogenous species (Fig. 2C), confirming that the expressed HEI-C cDNA encompasses the complete coding region of the gene.
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FIG. 2. Expression of HEI-C mRNA and protein. (A) A multiple-tissue Northern blot was probed with a 32P-labeled HEI-C oligonucleotide probe. A single message of approximately 1.3 kb was detected. (B) Western analysis of 10 µg of total-cell lysates from HeLa, MDCK, MCF7, and COS7 cells. Cells were lysed in RIPA buffer, subjected to electrophoresis on an SDS-10% PAGE gel, transferred to a polyvinylidene difluoride membrane, and immunoblotted with affinity-purified rabbit polyclonal antipeptide HEI-C antibodies. (C) Expression of the HEI-C clone in S. cerevisiae and mammalian cells produces a protein that comigrates with endogenous HEI-C. Total-cell lysate isolated from CGx75 transformed with vector alone (lane 1) or HEI-15 (lane 2) and grown in galactose and total-cell lysate from mock-transfected HeLa cells (lane 3) or HeLa cells transfected with HEI-C (lane 4) were subjected to electrophoresis on an SDS-10% PAGE gel, transferred to a polyvinylidene difluoride membrane, and probed with affinity-purified anti-peptide HEI-C antibodies.
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FIG. 3. HEI-C localizes to the spindle during mitosis. (A) MCF7 cells were initially synchronized with nocodazole, released, and allowed to progress through mitosis. HEI-C is shown in green. DNA was labeled with propidium iodide and digitally assigned to be blue. Bar, 5 µm. (B) Confocal analysis of unsynchronized cells double-labeled for HEI-C (in green) and -tubulin (in red). (C) Interphase MCF7 cells labeled to visualize HEI-C (green), -tubulin (red), or DNA (blue). The inset shows a zoomed yellow colocalization of HEI-C and -tubulin only (e.g., in the absence of the blue channel). (D) MDCK cells were stained with antibody to HEI-C (green) or to E-cadherin (red) to demonstrate HEI-C localization to cell junctions. (E) Western blot analysis of HeLa cells synchronized by double thymidine block (time zero), released, then harvested at 4, 6, 8, 10, or 12 h, as indicated, and compared with asynchronous cells (AS). Lysates were subjected to electrophoresis on an SDS-10% PAGE gel, transferred to a polyvinylidene difluoride membrane, and probed with affinity-purified anti-peptide HEI-C antibodies.
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-tubulin (Fig. 3B) shows colocalization with tubulin at the spindle poles as well as along the microtubule array, extending towards the chromosomes in mitotic cells. HEI-C localization to the spindle poles in mitosis may emanate from an initial localization to the centrosome, as in interphase cells HEI-C is at the centrosome, as demonstrated by costaining with
-tubulin (Fig. 3C), with the remainder of the protein diffuse in the cytoplasm. Of further interest, in MCF7 and MDCK cells, HEI-C localized to regions of cell-cell contact in some but not all cells (Fig. 3D). The significance of this cell junctional staining is not yet understood but may indicate that HEI-C is involved in communications between the cell attachment and cell divisional machinery. In contrast to the results in mitotic cells, HEI-C does not notably colocalize with the tubulin cytoskeleton in interphase cells (data not shown). The differences in HEI-C association with microtubules in interphase versus M-phase cells could derive from the contribution of cell cycle-regulated posttranslational modifications of HEI-C or changes in the gross levels of HEI-C. Lysates were prepared from cells synchronized by double thymidine block and then harvested at different times following release. Western analysis demonstrated that HEI-C levels are constant through the cell cycle, and the protein does not have obvious cell cycle-regulated changes in gel mobility suggestive of phosphorylation or other modifications (Fig. 3E).
To further explore the association of HEI-C with microtubules, an in vitro microtubule pulldown assay was used (51). Extracts prepared from asynchronously growing HeLa cells were incubated with purified, polymerized microtubules. These reactions were then layered onto a sucrose cushion and centrifuged to separate the polymerized microtubules and associated proteins recovered in the pellet from the remainder of the lysate (Fig. 4A). In the absence of microtubules, most of the HEI-C partitioned to the supernatant, but in the presence of polymerized microtubules, an increased fraction of HEI-C was recovered in the pellet (22%, versus 5% without microtubules). No HEI-C was obtained in pellet fractions in the absence of taxol (data not shown). This indicates that endogenous HEI-C from asynchronous (i.e., predominantly interphase) cells is competent to associate with polymerized microtubules in vitro.
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FIG. 4. HEI-C is associated in vitro with mitotic asters. (A) HeLa cells were lysed by Dounce homogenization in PHEM buffer, and the cell lysate was precleared by centrifugation. The supernatant was incubated either with (+MT) or without (-MT) microtubules that had been previously polymerized from purified tubulin by incubation in G-PEM buffer. The reactions were layered on a 15% sucrose solution and centrifuged. Total-cell lysate (T) or the resulting supernatant (S) or pellet (P) fractions were subjected to SDS-PAGE, and proteins were subsequently transferred to polyvinylidene difluoride and immunoblotted with affinity-purified anti-HEI-C antibodies. Quantitation was done with NIH Image analysis of scanned films. (B) Taxol and ATP were added to HeLa cell mitotic extracts to stimulate aster formation. Asters were pelleted, and the insoluble (P) and soluble (S) fractions were subjected to electrophoresis and immunoblotting with the indicated antibodies and quantitation as in A. (C) A HeLa cell mitotic extract was fractionated on a 5 to 20% sucrose gradient, and fractions ranging from the top (no. 1) to bottom (no. 14) were collected. Western analysis of these fractions was performed with antibodies specific for HEI-C, dynactin, and tubulin, as indicated.
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The mitosis-specific increase in microtubule binding efficiency suggested that HEI-C might associate with other proteins to facilitate its association with microtubules. To test this idea, we analyzed the distribution of HEI-C in HeLa mitotic extracts that were sedimented through a sucrose gradient. The distribution of HEI-C versus two reference proteins, tubulin and dynactin, was determined by Western blot analysis (Fig. 4C). Tubulin is a heterodimer of
and ß subunits with a sedimentation coefficient of 6S. Dynactin is a large multisubunit complex with a sedimentation coefficient of 20S. HEI-C showed a broad distribution in these gradients, with a peak at approximately 10S. This sedimentation profile indicates that HEI-C exists at mitosis in a protein complex with a molecular mass much larger than expected based on its amino acid sequence. At present we do not know if that complex is homo- or hetero-oligomeric, but the result suggests that HEI-C association with other proteins may contribute to its mitotic localization profile.
HEI-C depletion decreases the G2/M cell cycle compartment and induces apoptosis. To address the function of HEI-C at the spindle, we compared HeLa cells that were transfected with an siRNA duplex (14) designed to target HEI-C (HEIC.A) or transfected with an irrelevant siRNA (luciferase or scrambled sequence) or mock transfected or untreated. The HEI-C-specific siRNA duplex efficiently depleted HEI-C (Fig. 5A). HEI-C protein levels were noticeably reduced by 24 h (not shown) following transfection and 75% depleted by 2 days and remained depleted for at least 5 days. Based on quantitation of images, HEI-C levels were consistently reduced by 80 to 90% at 72 to 96 h post-siRNA treatment.
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FIG.5. Decrease in G2/M compartment of the cell cycle is accompanied by the appearance of a sub-G1 population in HEI-C-depleted cells. (A) Western analysis of siRNA-transfected cells. HeLa cells were untreated (U), treated with transfection reagent alone (M), transfected with a control siRNA (C), or transfected with an siRNA directed against HEI-C, HEIC.A (A). Cell lysates were subjected to electrophoresis, transferred to a polyvinylidene difluoride membrane, probed with antibody to HEI-C antibodies, and subsequently stripped and reprobed with actin as a loading control. (B) HeLa cells that were untreated, transfected with a control siRNA, or transfected with the HEIC.A siRNA were harvested at the indicated number of days (d) after siRNA transfection and fixed at 20°C in 70% ethanol. The cells were subsequently stained with propidium iodide and analyzed by FACScan. (C) HeLa cells were either left untreated or transfected with either a control siRNA or the HEI-C-directed siRNA HEIC.A and analyzed simultaneously for live annexin and propidium iodide staining at the times indicated after transfection by FACScan. Cell populations were analyzed with FlowJo software. The percent annexin-positive cells is shown. (D) Western analysis of HeLa cells untreated (U), transfected with a control siRNA (C), or transfected with the HEI-C-directed siRNA HEIC.A (A). Cells were lysed in RIPA buffer, subjected to electrophoresis on an SDS-10% PAGE gel, transferred to a polyvinylidene difluoride membrane, and immunoblotted with anti-p85 PARP antibodies.
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Together, these observations suggested that HEI-C-depleted cells might be undergoing apoptosis (7). To confirm this interpretation, HEI-C-depleted cells were assayed (Fig. 5C and 5D) by live-cell annexin and propidium iodide costaining, as well as by PARP cleavage. Annexin staining of HEI-C-depleted cells on days 2, 3, and 4 posttransfection showed an increase in annexin-positive cells in HEI-C-depleted cells on day 3 (30.7%) versus control transfected cells (8.88%), which continued to increase by day 4, with the total annexin-positive population rising to 47.4% of the population. PARP cleavage was evident by 2 days posttransfection and persisted through day 4 of HEI-C depletion. These results confirm that in an asynchronous population of cells, lack of HEI-C results in the induction of apoptosis and an overall decrease in the G2/M compartment of the cell cycle.
HEI-C is required for passage through mitosis. The reduced G2/M compartment and the increased degree of apoptosis identified in asynchronous cells with depleted HEI-C may represent linked phenomena, in which HEI-C-depleted cells are specifically unable to complete G2/M and apoptose. Alternatively, it might reflect two separable outcomes, in which HEI-C could be inducing apoptosis regardless of cell cycle compartment and also inducing arrest at an earlier stage in cell division, yielding an overall decrease in the number of cells able to enter G2/M. To determine which of these hypotheses was correct, HEI-C-depleted cells were synchronized by treatment with hydroxyurea in G1/S phase. Cells were released into the cell cycle and monitored by FACS, videomicroscopy, and immunofluorescence. FACS analysis (Fig. 6A) indicated that HEI-C-depleted cells synchronized effectively following hydroxyurea block and emerged from hydroxyurea block and proceeded through S and G2 with efficiency and kinetics similar to those in control cells.
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FIG. 6. HEI-C is required for passage through mitosis. (A) HeLa cells were either left untreated, transfected with a control siRNA, or transfected with the HEIC.A siRNA for 72 h. The cells were either allowed to continue untreated (asynchronous, AS) or treated with hydroxyurea for 20 h prior to harvest (i.e., at 52 h following siRNA transfection) to block cell cycle progression (+HU, 0) or treated with hydroxyurea, and then washed free of drug and released to enter the cell cycle for the indicated number of hours (6, 8, or 10 h postrelease [REL]). Cells were harvested and fixed at 20°C in 70% ethanol. The cells were subsequently stained with propidium iodide and analyzed by FACScan. (B) Western analysis of HeLa cells untreated (U), transfected with a control siRNA (C), or transfected with the HEIC-directed siRNA, HEIC.A (A). Cells were lysed in RIPA buffer, subjected to electrophoresis on an SDS-10% PAGE gel, transferred to a polyvinylidene difluoride membrane, and immunoblotted with affinity-purified rabbit polyclonal anti-PARP antibodies.
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HEI-C depletion induces aberrant spindle morphology and cellular demise during the metaphase-anaphase transition. We used video microscopy to analyze HEI-C-depleted or control transfected cells released from hydroxyurea block (observation beginning 6 h postrelease). The intervals from cell rounding to metaphase plate formation (R to M), metaphase to anaphase (M to A), anaphase to cleavage furrow formation (A to CF), and cleavage furrow formation to cytokinesis (CF to C) were recorded (Table 1). The interval between cell rounding and metaphase plate formation was 26 min for transfection control cells, compared to 49 min for HEIC.A-ransfected cells, reflecting a moderate delay. A more dramatic difference was seen in the HEI-C-depleted cells versus control cells at the metaphase-anaphase interval. In control transfected cells this interval was 30 min, while the HEI-C-depleted cells that completed this interval required 141 min. However, many (46%) of the HEI-C-depleted cells did not successfully complete mitosis at all.
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TABLE 1. Quantitation of cell cycle progression in HEI-C-depleted cells
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FIG. 7. Video microscopy of HEI-C-depleted cells in mitosis. HeLa cells were either transfected with the HEIC.A siRNA (panels A to H) or transfected with a control siRNA (panels I to L) for 72 h. 20 h prior to assessment, cells were treated with hydroxyurea to block cell cycle progression, then washed free of drug, and allowed to enter the cell cycle to enrich for cells in M phase. The first frame corresponds to the first appearance of a metaphase plate, while the times shown on each frame indicate time since the first frame. Asterisks mark cells tracked for the indicated time intervals.
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FIG. 8. Confocal analysis of HEI-C-depleted cells. HeLa cells that were depleted of HEIC.A (a to f) versus nondepleted controls (g and h) were fixed in 4% paraformaldehyde and costained with antitubulin antibodies (A) and SYTOX-Green nucleic acid stain (B). (C) Merged images of tubulin in red and DNA in blue. Bar, 10 µm.
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95% of HEI-C (Fig. 9A). However, depletion with either control preimmune antibody or anti-HEI-C antibody had no detectable effect on the morphology of mitotic asters (Fig. 9B), the efficiency with which asters formed, or the presence of other known aster components such as NuMA. These results indicate that microtubule focusing at poles does not require HEI-C and suggest that the mitotic defects observed by confocal and video microscopy in cells lacking HEI-C reflect defects in mitotic regulation independent of mitotic spindle pole organization.
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FIG. 9. HEI-C is not required for spindle assembly, and HEI-C depletion does not impair the spindle checkpoint. (A) HeLa cell mitotic extract was immunodepleted with protein A-conjugated agarose containing immunoglobulin G from the preimmune rabbit serum (A) or protein A-conjugated agarose containing affinity-purified antibodies against HEI-C (B). The protein A-conjugated agarose was recovered (PAb) from the depletion steps, and the remainder of the extracts was separated into soluble (S) and insoluble (P) fractions following aster assembly by centrifugation at 10,000 x g. These fractions were subjected to Western analysis (D) with antibodies to HEI-C, NuMA, and tubulin as indicated. (B) Following depletion as described for A., microtubule asters were assembled under standard conditions with taxol and ATP for 30 to 60 min at 30°C and processed for indirect immunofluorescence (A and B) with -tubulin- and NuMA-specific antibodies as indicated. (C) HEI-C-depleted cells have an intact spindle checkpoint. HeLa cells were either untreated, transfected with a control siRNA, or transfected with the HEIC.A siRNA for 48 h, then treated with nocodazole (+nocodazole) for 14 h or left untreated (nocodazole). Cells were harvested by fixation at 20°C in 70% ethanol. The cells were subsequently stained with propidium iodide and analyzed by FACScan.
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For the other proteins studied, it is becoming appreciated that their lack of a scorable in vitro phenotype reflects a role in control of spindle architecture in the specific context of a bipolar spindle, and HEI-C may function similarly. However, HEI-C does not conform to any previously identified class of proteins that are known to regulate the mitotic spindle. Its sequence does not predict an enzymatic activity, precluding it from two major groups of spindle regulators, kinases and motors, nor does HEI-C contain consensus sequences for phosphorylation by known cell cycle-regulatory kinases. Based on this profile, and based on the extensively coiled-coiled nature of HEI-C, we predict that HEI-C is a previously unidentified element of a complex involved in regulation of spindle integrity and functionality from metaphase through anaphase.
Based on the analysis of the consequences of HEI-C depletion, HEI-C is required for successful passage through mitosis. The normal duration of progress from rounding to metaphase indicates that the requirement for HEI-C is not critical in this interval (Table 1). In addition, immunodepletion of HEI-C in an assay for microtubule focusing at spindle poles showed no effect. Our data clearly indicate that lack of HEI-C imposes severe defects following metaphase plate formation, with consequences including metaphase-to-anaphase delay (class I) or cellular disintegration (class II). These observations, coupled with the fact class I cells have no delays in completing mitosis after their eventual entry into anaphase, suggest that HEI-C is required in M phase primarily for the completion of the metaphase-to-anaphase transition.
It is likely that the defects observed by immunofluorescence of HEI-C-depleted cells represent an underestimate of the consequences of the depletion of HEI-C, since many of the abnormal cells were removed from the population. The FACS analysis of HEI-C depletion in asynchronous cells over a time course of 4 days indicates the accumulation of a sub-G0 population and annexin-positive cells commencing at day 2 (Fig. 5B and C) or within 24 h of the earliest detectable depletion of HEI-C (data not shown). The cells in these populations may partly reflect the death of class II cells that have died in mitosis in the absence of HEI-C, but may additionally include the progeny of class I cells. Based on our analysis showing that some of the class I daughter cells died, a significant fraction of the progeny of these cells is potentially unviable in spite of their success in passage through M phase.
Class II cells undergo disintegration or explosion subsequent to metaphase plate formation. Biochemical markers of apoptosis are present, indicating that the mechanism of cell death may share some characteristics with classical apoptosis. However, in synchronized HEI-C-depleted cells, the amount of cleaved PARP did not increase specifically during mitosis, indicating that the cell disintegration seen during videomicroscopy may not be classical apoptosis, but rather mitotic catastrophe (4, 50, 67). Further supporting this idea, given that HEI-C-depleted cells are often characterized by aberrant and misaligned spindles, these cells would be predicted to undergo mitotic arrest as a result of spindle checkpoint activation and hence protected from apoptosis (22, 30, 64, 75). The fact that HEI-C-depleted cells are capable of arresting in response to nocodazole treatment (Fig. 8E) implies that a spindle checkpoint is intact; hence, the high frequency of cellular rupture observed at the metaphase-to-anaphase transition in these cells is extremely unusual. A limited number of reports have described cell death in this metaphase-to-anaphase compartment in response to loss of mitotic regulatory proteins, including, for example, a recent description of the consequences of depletion of the kinetochore-associated protein hNuf2 (10). However, cell death associated with hNuf2 depletion is marked by blebbing and formation of membrane protrusions, while cells depleted of HEI-C appear morphologically normal by phase microscopy until their sudden rupture. The mechanistic basis for this phenomenon will be an area of future investigations.
The coiled-coil sequence of HEI-C provides few clues as to protein function and has also impeded the use of standard technologies such as the two-hybrid system to identify specific protein interactors that might assign HEI-C to a defined regulatory pathway (data not shown). The fact that HEI-C is found in a high-molecular-weight complex at mitosis (Fig. 4B) is compatible with its association with other spindle-associated proteins. It is interesting that HEI-C was identified in a cross-species functional screen involving S. cerevisiae. Coiled-coil proteins that are involved in regulation of the mitotic spindle and cell death in higher eukaryotes in some cases have orthologs in S. cerevisiae, and mutations in these orthologs can induce abnormal budding. Coiled-coil domains are prevalent in spindle-associated motor proteins (e.g., dynein) (20) and other spindle-associated regulatory factors, e.g., the checkpoint protein Mad1 (25) and survivin (41), and the integrity of these coiled-coil domains has been shown to be important for protein function (41, 65).
There are particularly suggestive parallels between the activity of HEI-C as defined herein and the activity of survivin. Inhibitor of apoptosis (IAP) proteins, which include survivin, were first defined as a group of viral proteins that blocked cell defenses by eliminating their ability to undergo cell death. Depletion of survivin function by antisense RNA or by knockout results in aberrant spindle formation and polyploidy (6, 30, 41, 56, 73). BIR domain proteins are evolutionarily conserved through C. elegans and the yeasts, with the detected orthologs most closely related to survivin (18, 41, 46, 72, 73). In the yeasts S. cerevisiae and Schizosaccharomyces pombe, mutation of BIR1/bir1 causes mitotic deficiencies similar to those found in higher eukaryotes. These include arrest at the metaphase-to-anaphase transition based on failure to elongate the mitotic spindle; and strikingly, for S. cerevisiae, a change in budding profile that has been variously described as unusual cellular elongation (42) and induced pseudohyphal budding (72). These commonalities between survivin and HEI-C in S. cerevisiae and higher eukaryotes suggest that HEI-C may be affecting a similar subset of pathways.
Last, although we have clearly defined a role for HEI-C in mitotic progression, an intriguing possibility raised by the complex localization profile of the protein is that HEI-C has additional cellular functions. The observation that HEI-C is additionally enriched at areas of cell-cell contact raises the possibility that HEI-C is involved in transmission of information between the spindle and the cell periphery. This additional localization profile may account for the Northern blot-based predicted abundant expression of HEI-C in differentiated tissues. A number of proteins which migrate between peripheral cellular structures and the mitotic spindle, including HEF1 (37), zyxin (27), dynein (32, 43; reviewed in reference 31), EB1 (reviewed in reference 70), and others have been identified. As noted above, HEF1 was also identified in our laboratory in a screen for human genes which enhance filamentation in S. cerevisiae, functions at focal adhesions to provide attachment-induced survival signaling in interphase cells (34, 37), and is required for passage through mitosis (D. Dadke, E. Pugacheva, and E. Golemis, unpublished results). As another example, dynein is required in vivo and in vitro for spindle formation in mitosis (31), while during interphase it is involved in vesicle trafficking (31) and assembly of adherens junctions (32, 43).
The importance of pathways which coordinate events of the cell cycle and events at the cell periphery in S. cerevisiae has been well established (40), and such pathways are certain to be equally if not more important in higher eukaryotes. Involvement of HEI-C in such coordinating pathways will be a point of future interest.
This work was supported by grants from the National Institutes of Health to E.A.G. (CA80991) and to D.A.C. (GM51542), by an NIH Core Grant to Fox Chase Cancer Center, and by Tobacco Settlement funding from the State of Pennsylvania (to E.C.).
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