Dynamical Remodeling of the Transcriptome during Short-Term Anaerobiosis in Saccharomyces cerevisiae: Differential Response and Role of Msn2 and/or Msn4 and Other Factors in Galactose and Glucose Media
Mol. Cell. Biol. Lai et al.
25: 4075
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Files in this Data Supplement:
- Supplemental file 1
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Supplemental items S1 {Genomic log2 expression ratios and step-down Bonferroni P values (relative to time 0 [aerobic]) for the wild-type strain (JM43) grown in galactose medium (SSG-TEA) as a function of the number of generations under anaerobiosis}, S2 {Genomic log2 expression ratios and step-down Bonferroni P values (relative to time 0 [aerobic]) for the msn2/4 strain (KKY8) grown in galactose medium (SSG-TEA) as a function of the number of generations under anaerobiosis}, S3 {Genomic log2 expression ratios and step-down Bonferroni P values comparing the msn2/4 strain (KKY8) to its wild-type parent (JM43) (SSG-TEA medium) as a function of the number of generations under anaerobiosis}, S4 (Genomic log2 expression ratios and step-down Bonferroni P values (relative to time 0 [aerobic control]) for the wild-type strain (JM43) grown in glucose medium (SSD-TEA) as a function of the number of generations under anaerobiosis}, and S5 {Genomic log2 expression ratios and step-down Bonferroni P values comparing the wild-type strain (JM43) grown in glucose medium (SSD-TEA) to that grown in galactose medium (SSG-TEA) as a function of the number of generations under anaerobiosis}.
Zipped Excel file, 2MB.
- Supplemental file 2
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Supplemental Tables S1 (Listing of transcription factor consensus binding sequences used for calculating the MCS), S2 (Listing of TFMs, 6-mer oligonucleotides, and MIPS functional categories significantly enriched from clustering the 938 genes differentially expressed in response to anaerobiosis in galactose medium), and S3 (Listing of TFMs, 6-mer oligonucleotides, and MIPS functional categories significantly enriched from clustering the 352 genes differentially expressed in response to anaerobiosis in glucose medium.
Zipped Excel file, 191K.
