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Molecular and Cellular Biology, June 2005, p. 4956-4968, Vol. 25, No. 12
0270-7306/05/$08.00+0     doi:10.1128/MCB.25.12.4956-4968.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.

RelA/p65 Regulation of I{kappa}

Erin Hertlein,1,2 Jingxin Wang,1 Katherine J. Ladner,1 Nadine Bakkar,1,3 and Denis C. Guttridge1,2,3,4,5*

Human Cancer Genetics Program,1 Department of Molecular Virology, Immunology and Medical Genetics,4 Integrated Biomedical Graduate Program,2 Molecular, Cellular, and Developmental Biology Graduate Program,3 The Arthur G. James Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio5

Received 2 December 2004/ Returned for modification 19 January 2005/ Accepted 17 March 2005


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ABSTRACT
 
I{kappa}B inhibitor proteins are the primary regulators of NF-{kappa}B. In contrast to the defined regulatory interplay between NF-{kappa}B and I{kappa}B{alpha}, much less is known regarding the regulation of I{kappa} by NF-{kappa}B. Here, we describe in detail the regulation of I{kappa} by RelA/p65. Using p65–/– fibroblasts, we show that I{kappa}Bß is profoundly reduced in these cells, but not in other NF-{kappa}B subunit knockouts. This regulation prevails during embryonic and postnatal development in a tissue-specific manner. Significantly, in both p65–/– cells and tissues, I{kappa}B{alpha} is also reduced, but not nearly to the same extent as I{kappa}Bß, thus highlighting the degree to which I{kappa}Bß is dependent on p65. This dependence is based on the ability of p65 to stabilize I{kappa}Bß protein from the 26S proteasome, a process mediated in large part through the p65 carboxyl terminus. Furthermore, I{kappa}Bß was found to exist in both a basally phosphorylated and a hyperphosphorylated form. While the hyperphosphorylated form is less abundant, it is also more stable and less dependent on p65 and its carboxyl domain. Finally, we show that in p65–/– fibroblasts, expression of a proteolysis-resistant form of I{kappa}Bß, but not I{kappa}B{alpha}, causes a severe growth defect associated with apoptosis. Based on these findings, we propose that tight control of I{kappa} protein by p65 is necessary for the maintenance of cellular homeostasis.


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INTRODUCTION
 
The NF-{kappa}B transcription factor is a vital regulator of cellular processes involved in immune response, cellular proliferation, differentiation, and apoptosis (6, 38, 47, 53). Constitutive activation of NF-{kappa}B is also thought to contribute to multiple pathophysiological conditions such as rheumatoid arthritis (55), inflammatory bowel disease (60), and AIDS (22) and, with ever increasing evidence, cancer (1, 5, 33, 48). In mammals, the NF-{kappa}B family consists of RelA (from here on referred to as p65), c-Rel, and RelB, as well as p105 and p100 and their processed forms, p50 and p52, respectively (31). Each subunit contains a Rel homology domain (RHD) specifying DNA binding, protein dimerization, and nuclear localization. In addition, p65, c-Rel, and RelB contain transactivation domains (TAD) located at the carboxy terminus. Although in vitro most NF-{kappa}B subunits possess the ability to homo- or heterodimerize, in vivo, NF-{kappa}B primarily exists as a p50/p65 heterodimer.

Unlike the majority of transcription factors that reside in the nucleus, NF-{kappa}B is sequestered predominantly in the cytoplasm bound to I{kappa}B inhibitor proteins. I{kappa}B{alpha} is the prototypical I{kappa}B protein within a family that includes I{kappa}Bß, I{kappa}B{varepsilon}, p100, p105, Bcl-3, and newly described I{kappa}B{zeta} (6, 7, 32, 71). With the exceptions of Bcl-3 and I{kappa}B{zeta}, these proteins function as inhibitors through ankyrin repeats that interact with the RHD of NF-{kappa}B to mask the nuclear localization signal (NLS) and inhibit nuclear translocation. Classical activation of NF-{kappa}B proceeds by the degradation of I{kappa}B proteins, which is mediated by the activity of the I{kappa}B kinase complex (IKK) (31, 47). At the core of this large 700- to 900-kDa subunit complex are two catalytic subunits, IKK{alpha} and IKKß, and a regulatory subunit, IKK{gamma} or NEMO/IKKAP. In response to a multitude of factors that include inflammatory cytokines, bacterial products, viruses, double-stranded RNA, reactive oxygen species, and irradiation, IKK is activated, leading to the IKKß-dependent phosphorylation of I{kappa}B on two N-terminal serine residues (74). This triggers polyubiquitination on neighboring lysines and subsequent I{kappa}B proteolysis via the 26S proteasome (11, 47). Upon I{kappa}B degradation, NF-{kappa}B translocates to the nucleus, where it binds to its cognate DNA sequence and interacts with basal transcription and chromatin remodeling factors to activate gene expression (4, 15, 61, 63, 75).

Over the past decade, there has been a concerted effort to understand the function by which I{kappa}B proteins regulate NF-{kappa}B activity. Earlier studies demonstrated that shortly following NF-{kappa}B activation, I{kappa}B{alpha} is resynthesized in an NF-{kappa}B-dependent manner (24, 44, 51). Following this resynthesis, I{kappa}B{alpha} enters the nucleus by a yet to be confirmed mechanism, where it then binds and removes NF-{kappa}B from the DNA and exports the complex back to the cytoplasm (2, 13, 20, 65). By this autoregulatory mechanism, NF-{kappa}B transcriptional activity remains transient, lasting between 1 and 4 h in most cells, with the exception in mature splenic B cells, where the p50/c-Rel complex is constitutively active (34, 54, 59). Disruption of this regulatory loop via the deletion of I{kappa}B{alpha} expression leads to persistent p65 activity and postnatal lethality (8, 49). More recently, structural analysis of I{kappa}B{alpha} in complex with the p50/p65 heterodimer revealed that I{kappa}B{alpha} ankyrin repeats 3 to 6 contribute the majority of p50/p65 binding while repeats 1 and 2 are more loosely associated with the NLS site of NF-{kappa}B (42, 45). The p50 NLS remains exposed when bound to I{kappa}B{alpha} (42, 45), which is thought to allow cytoplasmic to nuclear shuttling of the complex (56), while reverse shuttling is regulated by nuclear export signals located in the carboxyl- and amino-terminal halves of I{kappa}B{alpha} (3, 41, 46, 67), as well as in the TAD of p65 (37).

In contrast to this well-described regulatory interplay between NF-{kappa}B and I{kappa}B{alpha}, the regulation of NF-{kappa}B by I{kappa}Bß and a potential feedback mechanism has not been described. Unlike I{kappa}B{alpha}, the beta isoform is not rapidly degraded by classical NF-{kappa}B-inducing signals, and following NF-{kappa}B activation, I{kappa}Bß is also not resynthesized in an NF-{kappa}B-dependent manner. Depending on the cell type or stimulus, I{kappa}Bß may instead undergo persistent degradation, leading to constitutive NF-{kappa}B activity (12, 50, 69). Constitutive NF-{kappa}B activity is also regulated by a hypophosphorylated form of I{kappa} that is capable of competing with I{kappa}B{alpha} for NF-{kappa}B binding but is incapable of dislodging NF-{kappa}B from the DNA (23, 66). Basal phosphorylation of I{kappa}Bß occurs in its carboxyl-terminal PEST domain that functions to inhibit NF-{kappa}B DNA binding and is thought to be primarily responsible for the formation of latent I{kappa}Bß/NF-{kappa}B complexes (58, 70). However, unlike I{kappa}B{alpha}/NF-{kappa}B, I{kappa}Bß/NF-{kappa}B complexes do not undergo nuclear-to-cytoplasmic shuttling (68) due to the addition of a linker region between ankyrin repeats 3 and 4 in I{kappa}Bß that binds {kappa}B-Ras to efficiently mask the second NLS in the NF-{kappa}B dimer complex (16, 17, 29, 57). Also, unlike I{kappa}B{alpha} (8, 49), mice lacking I{kappa}Bß were noted to have a mild phenotype (18), suggesting at first that these proteins are functionally distinct. However, knock-in expression of I{kappa} under the control of the I{kappa}B{alpha} promoter rescued I{kappa}B{alpha}-associated lethality (18). This demonstrates that functional overlap between these proteins clearly exists, but given the overt phenotypic differences among respective I{kappa}B knockouts, it also points to the importance of spatiotemporal expression of I{kappa}B proteins in the regulation of NF-{kappa}B.

We have made the observation that I{kappa}Bß levels are dramatically reduced in mouse embryonic fibroblasts (MEFs) null for the p65 subunit of NF-{kappa}B. Although others have indirectly noted this phenomenon (9, 40), to date a detailed characterization of this regulation has not been performed. In this report, the specificity, mechanism, and physiological relevance of p65 regulation of I{kappa}Bß are described. Our results reveal a remarkable dependence of I{kappa}Bß for p65 in most, but not all, tissues. This dependence is mediated through the stabilization of I{kappa} protein by p65 and its carboxyl terminus encompassing the TADs. Our results also show that I{kappa}Bß expression in p65-null MEFs has a severe impact on cell growth and viability. Interestingly, although p65 is considered constitutively expressed, studies have reported that p65 expression is in fact low or even undetectable in early development (21, 62) and in selective cell types (73). Based on such studies, as well as our own present findings, we suggest that the destabilization of I{kappa}Bß in cells lacking p65 is a regulatory process that might have emerged to ensure proper cell growth and viability.


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MATERIALS AND METHODS
 
Materials. Murine tumor necrosis factor alpha (TNF-{alpha}) was purchased from Roche Biochemicals (Indianapolis, IN). Antibodies to I{kappa}B{alpha} (C21), I{kappa}Bß (C20, N20), Bcl-3, IKK{gamma}, and p100 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA); myosin heavy chain and {alpha}-tubulin were from Sigma (St. Louis, MO); p65 was from Rockland Immunochemicals, Inc. (Gilbertsville, PA); and hemagglutinin (HA) was from Covance (Princeton, NJ). MG-132, ALLN, and lactacystin were purchased from Calbiochem (San Diego, CA); cycloheximide was from Sigma (St. Louis, MO); and {lambda}-phosphatase was from New England Biolabs (Beverly, MA). [35S] Easy Tag protein labeling mix was purchased from NEN (Boston, MA), and methionine/cysteine-free Dulbecco's modified Eagle's medium (DMEM) was from Invitrogen (Carlsbad, CA). Materials required for immunohistochemical analysis were obtained from Vector Laboratories (Burlingame, CA).

Cell culture. All fibroblast cells were cultured in high-glucose DMEM containing 10% fetal bovine serum and antibiotics. For p50 and Bcl-3 MEFs, mice null for these proteins (Jackson Laboratories, Bar Harbor, Maine) were crossed with their respective wild-type strains. Resulting heterozygotes were then bred, and MEFs were prepared from embryos at day 13.5 postcoitus. In a similar manner, p65 MEFs were generated from embryonic day 13.5 (E13.5) p65+/+, p65+/–, and p65–/– embryos. C2C12 myoblasts were cultured as previously described (35).

Plasmids. Full-length p65 [p65(FL)] and carboxyl truncation mutants [p65({Delta}534), p65({Delta}521), and p65({Delta}313)] were cloned into the pFLAG-CMV-2 expression plasmid as previously described (72). For the generation of p65({Delta}431), Flag-tagged p65(FL) was used as a template and a DNA fragment corresponding to amino acids 1 to 431 was amplified with primers 5'-GATCAAGCTTGACGAACTGTTCCCCCTCATC and 3'-GATCGATATCTCAAGCCTGGGTGGGCTTGGGG. The DNA was subsequently cloned into the HindIII/EcoRV sites of a pFLAG-CMV-2 plasmid. Construct p65({Delta}319) was generated in a similar manner using primers 5'-GATCAAGCTTGACGAACTGTTCCCCCTCATC and 3'-CGATATCTCAGCTGAAAGGACTCTTCTTCATG. Retroviral expression constructs for p65 and I{kappa}Bß were created by reverse transcription-PCR to amplify the respective cDNA from human fibroblasts and cloned into pBabepuro. The p65 construct was generated to produce the full-length protein. Wild-type I{kappa} and I{kappa}Bß-SR (deleted in the signal response region, amino acids 1 to 54) were generated with an N-terminal HA epitope tag. pBabeI{kappa}B{alpha}-SR was generated by excising the cDNA of human I{kappa}B{alpha}-SR (mutated in Ser-32 and Ser-36 to alanines) from a pCMV4 expression plasmid (generously provided by D. Ballard, Vanderbilt University) with BglII/SmaI restriction enzymes and subcloned in BamH1/SnaB sites in pBabepuro. pCMVI{kappa}Bß(S19/23A) and pCMVI{kappa}Bß(S19/23E) were generated by site-directed mutagenesis from pCDNA3.1 and pHM6 expression plasmids containing I{kappa}Bß using the QuikChange site-directed mutagenesis kit (Stratagene) with primers S19/23A (5'-GAATGGTGCGACGCCGGCCTGGGCGCCCTGGGTCCG-3') and S19/23E (5'-CAGATGAATGGTGCGACGAAGGCCTGGGCGAGCTGGGTCCGGAC-3') (mutated residues are underlined). All clones were confirmed by DNA sequencing and Western blot analysis.

Immunoblotting, EMSA, and kinase assay. Whole-cell extracts from cultured cells and immunoblotting were prepared as previously described (35). Extracts from mouse tissue were prepared by homogenization in lysis buffer (1% Triton X-100, 150 mM NaCl, 50 mM Tris [pH 7.5], 1 mM EDTA, 1 mM phenylmethylsulfonyl fluoride, standard protease inhibitors). Protein detection was obtained by enhanced chemiluminescence (Perkin-Elmer Life Sciences, Boston, MA) and imaged either by using a Chemidoc gel documentation system (Bio-Rad Laboratories, Hercules, CA) or by exposing blots to film. All quantitation was performed using the ImageJ software (National Institutes of Health, Bethesda, MD). Electrophoretic mobility shift assays (EMSAs) and IKK kinase assays were performed as previously described (19, 25).

35S labeling and immunoprecipitations. For labeling reactions, p65+/+ and p65–/– MEFs were cultured in DMEM lacking methionine or cysteine for 2 h and subsequently pulse-labeled with 35S-labeled methionine and cysteine for up to 1 h. Whole-cell extracts were prepared in a standard radioimmunoprecipitation assay buffer. For immunoprecipitation, 500 µg of protein was precleared with rabbit immunoglobulin G (IgG) for 2 h and nonspecific complexes were precipitated by centrifugation using 25 µl of A/G agarose beads (Santa Cruz Biotechnology, Santa Cruz, CA). Supernatants were then incubated overnight at 4°C with 1 µg of either IgG or an I{kappa}Bß antibody. The following day, complexes were precipitated by centrifugation using 30 µl of A/G agarose beads, washed three times in lysis buffer, resuspended in gel loading buffer, and fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Gels were dried and visualized on X-OMAT film.

Transfections and retrovirus infections. Typically, 75% confluent MEFs were transfected in low-serum Opti-MEM medium using Lipofectamine reagent (Invitrogen, Carlsbad, CA) according to the manufacturer's recommendations. Retrovirus production and infections were performed as previously described (35).

Immunohistochemistry. E13.5 embryos either wild type or null for p65 were fixed in 10% formalin overnight at 4°C and then dehydrated and paraffin embedded. Longitudinal sections of the entire embryo and cross sections through selective tissues were prepared. Sections were deparaffinized by heating at 60°C for 1 h, followed by treatment with xylene and rehydration. Slides were treated with 3% hydrogen peroxide to block any endogenous peroxidase activity that could interfere with the detection reaction. Sections were steamed for 30 min in antigen retrieval solution and then incubated in avidin and biotin solutions. Following blocking for 1 h in 5% goat serum diluted in phosphate-buffered saline, sections were incubated with primary antibody against p65 (for 1 h; 1:5,000 dilution in 5% goat serum), I{kappa}Bß (for 1 h; 1:300 dilution in 5% goat serum), or myosin heavy chain (for 30 min; 1:2,000 dilution in mouse on mouse [MOM] diluent). Sections were subsequently incubated with a biotinylated secondary antibody. For p65 and I{kappa}Bß, the secondary antibody used was goat anti-rabbit (for 30 min; 1:250 in 5% goat serum) and for myosin heavy chain it was goat anti-mouse (for 10 min; 1:250 in MOM diluent). Sections were developed by incubation with avidin/biotin-complexed peroxidase to recognize secondary antibody (ABC Elite) and using 3,3'-diaminobenzidine as the enzyme substrate (DAB kit).

Real-time PCR. RNA was prepared in TRIzol reagent (Invitrogen, Carlsbad, CA) as recommended by the manufacturer and further purified using RNeasy affinity columns (QIAGEN, Valencia, CA). cDNA was generated from 2 µg total RNA by reverse transcription with Superscript II (Invitrogen, Carlsbad, CA) according to the manufacturer's specifications. One microliter of cDNA was used as the template in a total reaction volume of 25 µl containing final concentrations of 1x iQ SYBR Green Super mix (Bio-Rad, Hercules, CA) and 0.5 µM each forward and reverse primers. The primer sequences used were as follows: I{kappa}B{alpha}, 5'-GGAGACTCGTTCCTGCACTTGG and 3'-AACAAGAGCGAAACCAGGTCAGG; I{kappa}Bß, 5'-ACACAGCCCTGCACTTGGCTG and 3'-GGTATCTGAGGCATCTCTTGGG; internal control GAPDH, 5'-GCAAATTCAACGGCACAGTCAAG and 3'-GTTCACACCCATCACAAACATGG. Data were read and collected on the Bio-Rad iCycler.

Mice and genotyping. Animals were housed in the animal facility at the Ohio State University Heart and Lung Research Institute under supersterile conditions maintaining constant temperature and humidity and fed a standard diet. Treatment of mice was in accordance to the institutional guidelines of the Animal Care and Use Committee. p65–/– TNF-{alpha}–/– mice were generated as previously described (26). Briefly, p65+/– TNF-{alpha}+/+ mice were crossed to p65+/+ TNF-{alpha}–– mice (Jackson Laboratories, Bar Harbor, Maine). From this cross, resulting p65+/– TNF-{alpha}+/– mice were crossed to obtain p65+/+ TNF-{alpha}–/– and p65–/– TNF-{alpha}–/– mice in the expected Mendelian ratios. Genotypes of p65, TNF-{alpha}, NFKB1/p50, and Bcl-3 mice were confirmed by PCR analysis from prepared tail DNA.

Growth curves and flow cytometry. p65–/– cells infected with pBabe vector, I{kappa}Bß-SR, or I{kappa}B{alpha}-SR were grown under puromycin selection. Cells (1 x 104) were plated in triplicate in 12-well cell culture plates and counted on indicated days. Apoptosis was evaluated using Annexin V-fluorescein isothiocyanate staining according to the manufacturer's specifications (Santa Cruz Biotechnology, Santa Cruz, CA). Briefly, 5 x 105 cells were washed with cold phosphate-buffered saline and suspended in 50 µl of annexin V-fluorescein isothiocyanate staining solution. After 15 min of incubation at room temperature, cells were fixed in 10% formaldehyde and subsequently analyzed on a FACScalibur flow cytometer (Becton-Dickinson, Mountain View, CA). Fluorescence data were analyzed using CellQuest Pro software.


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RESULTS
 
Regulation of I{kappa}Bß is specific for the loss of p65. MEFs null for p65 were utilized in an attempt to gain insight into the mechanisms of NF-{kappa}B-dependent transcription. During the course of this analysis, we made the observation that I{kappa} levels were strikingly lower in p65–/– fibroblasts compared to their wild-type counterparts (Fig. 1A). Although I{kappa}B{alpha} is a transcriptional target of p65, its level of regulation was noticeably less than that for I{kappa}Bß. In addition, no detectable changes in I{kappa}B{varepsilon}, p100, or Bcl-3 were seen between p65–/– and p65+/+ cells, demonstrating that p65 does not function as a general regulator of I{kappa}B proteins. To determine the specificity of this regulation, levels of I{kappa} were compared in MEFs lacking other subunits in either the NF-{kappa}B family or the NF-{kappa}B signaling pathway. As opposed to the marked reduction of I{kappa}Bß in p65–/– MEFs, no changes in I{kappa}Bß were observed in fibroblasts lacking c-Rel, RelB, p50, p52, IKK{alpha}, IKKß, IKK{gamma}, I{kappa}B{alpha}, or Bcl-3 (Fig. 1B), implying that regulation of I{kappa}Bß is specific to p65.



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FIG. 1. I{kappa}Bß is specifically regulated by p65 in fibroblasts. (A) Whole-cell extracts (WCEs) were prepared from immortalized MEFs either wild type or null for the p65 subunit of NF-{kappa}B, and the levels of the indicated proteins were analyzed by Western blotting. (B) Western blot assays to probe for I{kappa}B{alpha} and I{kappa}Bß in MEFs either wild type or null for various components in the NF-{kappa}B signaling pathway. Genotypes for all cell lines were confirmed by PCR analysis. (C) WCEs were prepared from vector or I{kappa}B{alpha}-SR C2C12 myoblasts, and Western blot assays were performed to probe for I{kappa}B proteins. (D) Primary MEFs were isolated from E13.5 embryos and genotyped for p65 by PCR. WCEs were prepared from p65 wild-type, heterozygous, and null MEFs, and Western blot assays were performed to probe for p65, I{kappa}B{alpha}, and I{kappa}Bß. {alpha}-Tubulin was used as a loading control. (E) Quantitation of I{kappa}B proteins from two Western blot assays performed with WCEs obtained from two independent litters as described for panel D. Levels of I{kappa}B proteins were normalized to {alpha}-tubulin and compared to the expression of I{kappa}B proteins obtained from wild-type cells, which was set to a value of 100%.

To determine whether regulation of I{kappa}Bß was due to the physical absence of p65 or simply loss of its activity, we verified I{kappa}Bß protein levels in myoblast cells devoid of NF-{kappa}B transactivation function due to the stable expression of the degradation-resistant I{kappa}B{alpha}-SR mutant (36). In these cells, lack of NF-{kappa}B activity maintained I{kappa}Bß protein levels (Fig. 1C), indicating that reduction of I{kappa}Bß results from the physical loss of p65.

Since decreases in I{kappa}Bß were detected using established fibroblasts, it was important to determine whether this regulation was a consequence of the immortalization process due to the absence of p65. Mice heterozygous for p65 were therefore bred and E13.5 MEFs were prepared. In comparison to wild-type cells, p65+/– MEFs expressed approximately 50% less I{kappa} and, strikingly, I{kappa}Bß was nearly undetectable in null cells (Fig. 1D and E). In contrast, I{kappa}B{alpha} expression was only slightly reduced in p65+/– MEFs while approximately 35% remained in cells lacking p65. These data demonstrate that in fibroblasts, p65 regulation of I{kappa}Bß is not a phenomenon of cellular immortalization and the degree to which p65 controls I{kappa} expression is significantly higher than that for I{kappa}B{alpha}.

p65 regulation of I{kappa}Bß is maintained in embryonic and postnatal development. To determine if this regulation occurred in cells other than MEFs, immunohistochemical analysis of I{kappa}Bß was performed with p65+/+ and p65–/– embryos at day 13.5, a time that precedes liver apoptosis and lethality of p65-null mice (9). As expected, no overt morphological defects were observed at this developmental stage in embryos lacking p65 (Fig. 2A). Results revealed, however, that I{kappa}Bß expression was generally reduced in p65–/– embryos, with more apparent regulation occurring in the liver, lung, and brain (Fig. 2A and B). This implied that I{kappa}Bß regulation by p65 occurred in multiple cell types. To confirm that these findings were not due to staining artifacts, immunoblotting was performed from isolated fetal livers. In line with the immunohistochemistry data, I{kappa}Bß was found strongly repressed in p65–/– liver cells (Fig. 2C). Immunoblots also revealed that, similar to embryonic fibroblasts, the downregulation of I{kappa}B{alpha} in p65–/– livers was not nearly to the same extent as that for I{kappa}Bß, reaffirming the tight control of I{kappa}Bß expression by p65.



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FIG. 2. p65 regulation of I{kappa}Bß is not limited to fibroblasts. (A) Histological hematoxylin-and-eosin (H&E) and immunohistochemical staining of p65 and I{kappa}Bß from longitudinal sections of p65+/+ (a, b, c) and p65–/– (d, e, f) embryos (x1 magnification). (B) Immunohistochemical staining of I{kappa}Bß of liver (a, d), lung (b, e), and brain (c, f) tissues from p65+/+ and p65–/– embryos (x4 magnification). (C) Primary fetal liver cells were prepared from E13.5 embryos, and after genotypes were confirmed, Western blot assays were performed to probe for p65, I{kappa}B{alpha}, and I{kappa}Bß. {alpha}-Tubulin was used as a loading control. (D) p65 and I{kappa}Bß immunohistochemical staining of heart tissue from p65+/+ and p65–/– embryos (x4 magnification). (E) p65 and I{kappa}Bß immunohistochemical staining of forelimbs from p65+/+ and p65–/– embryos. To confirm skeletal muscle staining, serial sections of forelimbs were separately stained for myosin heavy chain (MyHC; arrowheads denote muscle tracks; x4 magnification).

Next we asked whether p65 regulation of I{kappa}Bß could be maintained in adult mice. Although p65–/– mice die between E14.5 and E15.5 (9), liver apoptosis and embryonic lethality can be rescued with the additional deletion of TNF-{alpha} (27). Thus, p65–/– TNF-{alpha}–/– double knockouts were generated and at approximately 4 weeks of age, p65+/+ TNF-{alpha}–/– and p65–/– TNF-{alpha}–/– mice were sacrificed and tissues were processed for immunoblot analysis. Except for a p65-reactive band that reproducibly appeared in brain tissue, the complete absence of p65 staining in all remaining tissues confirmed the null phenotype of these mice (Fig. 3A). In agreement with immunohistochemical data, I{kappa}Bß was also found generally repressed in p65–/– tissues, suggesting that this regulation is maintained into adulthood (Fig. 3A). Of the p65–/– tissues examined, spleen, thymus, and skin samples contained the least I{kappa}Bß, with less but still significant reduction observable in the brain, liver, and lung compared to wild-type mice (Fig. 3A and B). Although I{kappa}B{alpha} was also downregulated in tissues lacking p65, similar to cultured MEFs and liver cells, the qualitative difference in expression compared to wild-type tissues was not as significant as that for I{kappa}Bß.



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FIG. 3. p65 regulates various forms of I{kappa}Bß in postnatal development in a tissue-specific manner. p65+/– TNF-{alpha}–/– mice were bred to generate p65+/+ TNF-{alpha}–/– and p65–/– TNF-{alpha}–/– progeny. (A) At 4 weeks of age, mice were sacrificed and tissue homogenates were prepared (skmc, skeletal muscle). Western blot assays were then performed to probe for p65, I{kappa}B{alpha}, I{kappa}Bß, and {alpha}-tubulin. Each Western blot assay is representative of a total of four different blot assays derived from two sets of littermates. (B) Western blot assay to probe for I{kappa}Bß in p65+/+ TNF-{alpha}–/– brain, skin, skeletal muscle, and heart tissues. Arrows denote I{kappa}Bß forms I through IV. (C) Similar extracts as in panel A were either left untreated or treated with phosphatase (PPase) enzyme, and Western blot assay was performed to probe for I{kappa}Bß. Arrows denote phosphorylated forms of I{kappa}Bß, and asterisks denote the shifted (dephosphorylated) forms of I{kappa}Bß. (D) The N-terminal I{kappa}Bß antibody (N20) was used in a Western analysis to verify I{kappa}Bß forms in p65+/+ TNF-{alpha}–/– tissues.

I{kappa}Bß is expressed in alternative forms that are differentially regulated by p65. Interestingly, upon closer examination of immunohistochemical sections shown in Fig. 2, we observed that in heart and skeletal muscle, levels of I{kappa}Bß expression appeared almost comparable between p65+/+ and p65–/– embryos (Fig. 2D and E; note the colocalization of I{kappa}Bß and the skeletal muscle marker myosin heavy chain). This suggested that I{kappa} regulation by p65 might also be tissue specific. Indeed, the immunoblot analysis in Fig. 3A showed significantly less reduction of I{kappa}Bß in skeletal muscle and heart compared to other tissues lacking p65. I{kappa}Bß levels in these mice were also largely retained in testis tissue, which is consistent with previous findings showing that I{kappa}Bß is particularly rich in this tissue (14). Of further interest was the identification that I{kappa}Bß produced from skeletal muscle and heart tissues migrated at a distinctly higher mobility compared to other tissues (Fig. 3A and B). In fact, as opposed to reports that murine cells produce only one form of I{kappa}Bß (39, 43), under our standard gel fractionation conditions, at least four forms of I{kappa}Bß were clearly discernible, which we refer to as forms I, II, III, and IV (Fig. 3B). I{kappa}Bß-I and I{kappa}Bß-IV represented the major and minor expressing forms in most tissues, respectively, and both were sensitive to p65 regulation, although I{kappa}Bß-I appeared more so then I{kappa}Bß-IV (Fig. 3A). However, in skeletal muscle and heart tissues, I{kappa}Bß-I and IV forms were less expressed, while I{kappa}Bß-II and I{kappa}Bß-III forms were readily detectable compared to other tissues. In addition, similar to what we had observed with I{kappa}Bß-I in testis tissue, the I{kappa}Bß-II and I{kappa}Bß-III forms also remained largely expressed in muscle tissues deficient in p65.

Since I{kappa}Bß is constitutively phosphorylated (58, 69, 70), tissue homogenates were phosphatase treated to further ascertain the characteristics of these various I{kappa}Bß-reactive polypeptides. This treatment caused a shift in I{kappa}Bß-I and -IV forms, promoting the appearance of a slightly faster-migrating I{kappa}Bß protein (Fig. 3C, denoted by asterisks). Based on these results, I{kappa}Bß-I is likely to represent the basally phosphorylated 45-kDa form of I{kappa}Bß that is most commonly described and whose stimulus-dependent hypophosphorylated state is associated with persistent activation of NF-{kappa}B (66, 69). Although I{kappa}Bß-IV is a minor component, the data also demonstrate that I{kappa}Bß can exist in a hyperphosphorylated state. In comparison, I{kappa}Bß-II and I{kappa}Bß-III were completely resistant to phosphatase treatment, which suggests that these proteins either represent unique forms of I{kappa} devoid of phosphorylation or are I{kappa}Bß-like polypeptides that may have cross-reacted with this I{kappa}Bß carboxyl terminus-specific antibody used in immunoblot and immunohistochemical analyses. To make this distinction, immunoblots were repeated with a second antibody generated instead to the amino terminus of I{kappa}Bß (referred to as N20). Consistent with our previous results, the N20 antibody also reacted with I{kappa}Bß forms I and IV, thus validating the expression of these I{kappa} forms in murine tissues (Fig. 3D). However, in contrast to the carboxyl-terminal antibody, the N20 antibody was clearly reactive with I{kappa}Bß-I, but less so with I{kappa}Bß-IV, in skeletal muscle and heart tissues (Fig. 3D). In addition, this I{kappa}Bß antibody again recognized altered I{kappa} forms in skeletal muscle and heart tissues (Fig. 3D), but these forms did not migrate to the same mobility as forms II and III. Collectively, these data imply that skeletal muscle and heart tissues may be capable of synthesizing distinct I{kappa}Bß-like proteins. This same logic could apply to p65 expression in brain tissue, where a polypeptide migrating with an approximate mobility of 65 kDa, as described above, was reproducibly detected in p65-null mice (Fig. 3A). In any regard, it is clear that a more detailed investigation of I{kappa}Bß in muscle tissues will be required to determine whether such forms derive from posttranslational modifications or alternative splicing events.

Absence of p65 promotes I{kappa}Bß degradation by the 26S proteasome independent of IKK and phosphoacceptor serines 19 and 23. Next, we examined the mechanism by which p65 regulates I{kappa}Bß. Although a consensus NF-{kappa}B binding site is contained within the I{kappa}Bß promoter, overexpression of p65 has been shown to be incapable of stimulating I{kappa}Bß transcription (14), which argued, as others have before (69), that I{kappa} is not a transcriptional target of p65. In line with these findings, we too could not detect any significant difference in steady-state levels of I{kappa}Bß mRNA between p65+/+ or p65–/– fibroblasts treated with TNF while, as expected, I{kappa}B{alpha} mRNA was readily induced by this cytokine in a p65-dependent manner (Fig. 4A).



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FIG. 4. I{kappa}Bß downregulation in p65–/– MEFs is regulated by the proteasome independent of classical IKK signaling. (A) MEFs wild type and null for p65 were treated with TNF-{alpha}, and at indicated time points a real-time PCR was used to measure I{kappa}B{alpha} and I{kappa}Bß RNAs. (B) p65+/+ and p65–/– MEFs were incubated for 2 h in methionine- and cysteine-free DMEM and subsequently labeled with a [35S]methionine/cysteine mix for an additional hour. Whole-cell extracts were prepared, and I{kappa}Bß was immunoprecipitated either with IgG (control) or with an I{kappa}Bß-specific antibody. Complexes were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and visualized by exposing dried gels to film for up to 3 days (arrow denotes I{kappa}Bß). (C) p65+/+ and p65–/– MEFs were treated with cycloheximide (CHX; 10 µg/ml), and at indicated times whole-cell extracts were prepared and Western blot assays performed to probe for I{kappa}Bß. Levels of I{kappa}Bß were quantitated from an average of three Western blot assays. (D) Similar conditions were used to treat p65+/+ and p65–/– MEFs with MG-132, ALLN, and lactacysteine (all at 10 µM). (E) Kinase assays (KA) were performed with IKK{gamma} immunoprecipitates from p65+/+ and p65–/– MEFs incubated with glutathione S-transferase-I{kappa}B{alpha} as a substrate. Whole-cell extracts from p65+/+ and p65–/– MEFs used in kinase assay were analyzed by Western bloting to probe for IKK{alpha} and p65. (F) Western blot assays to probe for I{kappa}Bß and tubulin in p65–/– MEFs transfected with vector control or catalytically inactive IKK{alpha} or IKKß proteins (top). Inhibitory activity of IKK proteins was verified by luciferase NF-{kappa}B reporter assays (bottom). (G) p65–/– MEFs were transfected with either HA-tagged wild-type (WT) I{kappa}Bß or HA-tagged I{kappa}Bß mutated at serines 19 and 23 to either alanine (S19/23A) or glutamic acid (S19/23E) residues. After 24 h, cells were treated with cycloheximide (10 µg/ml) for the indicated times. Whole-cell extracts were then prepared and Western blot assays performed to probe for HA and {alpha}-tubulin.

The above findings suggested that p65 regulation of I{kappa} was not transcriptionally mediated and therefore is likely to occur at the protein level, affecting either the synthetic rate or stability of I{kappa}Bß. To address these possibilities, p65+/+ or p65–/– fibroblasts were metabolically labeled with 35S and I{kappa}Bß was subsequently analyzed by immunoprecipitation. Results showed similar expression levels of I{kappa}Bß following 10, 30, or 60 min of labeling (Fig. 4B and data not shown), indicating that loss of p65 does not affect the rate of I{kappa}Bß synthesis. To examine I{kappa} stability, fibroblasts were treated with cycloheximide and I{kappa} was analyzed over time. During an 8-h period, little destabilization of I{kappa}Bß was observed in p65+/+ cells, whereas in p65–/– cells, nearly a third of the protein was degraded after only 30 min of treatment (Fig. 4C). Further treatment of fibroblasts with MG-132 to inhibit proteasome activity demonstrated little increase in I{kappa}Bß stability in p65+/+ cells, while levels of I{kappa}Bß protein increased steadily over time in cells lacking p65 (Fig. 4D). Similar results were obtained with additional proteasome inhibitors, ALLN and lactacysteine (Fig. 4D), demonstrating that absence of p65 leads to I{kappa}Bß destabilization mediated by the 26S proteasome complex.

To further investigate the mechanism of I{kappa}Bß turnover, we asked whether this regulation by the proteasome was also dependent on IKK activity and Ser-19 and Ser-23 that are phosphorylated in response to a classical NF-{kappa}B-inducing signal. Interestingly, kinase assays revealed that p65–/– MEFs exhibited substantially higher basal IKK activity compared to wild-type cells (Fig. 4E). However, transient overexpression of catalytically inactive IKK{alpha} and IKKß subunits (Fig. 4F) or treatment with IKK inhibitor compounds (Bay11-7085 and PS1145; data not shown) did not restore I{kappa}Bß levels in p65–/– MEFs. In addition, transient expression of HA-tagged I{kappa} proteins mutated at Ser-19 and Ser-23 to alanine (S19/23A) or glutamic acid (S19/23E) residues had no significant effect on either the basal level or turnover rate of I{kappa}Bß in p65–/– cells (Fig. 4G). Therefore, despite elevated levels of IKK activity in p65–/– MEFs, I{kappa} proteolysis in these cells does not appear to be regulated by the classical IKK signaling pathway.

The carboxyl terminus of p65 is required for I{kappa}Bß stability. To address whether p65 is a direct regulator of I{kappa} stability, p65 was reconstituted in null fibroblasts. Results showed that I{kappa}Bß expression was indeed restored in these cells (Fig. 5A). To further test the specificity of this regulation, we also examined the levels of {kappa}B-Ras, a Ras-like small GTPase recently shown to directly bind I{kappa}Bß and contribute to its stabilization in response to an NF-{kappa}B-inducing signal (16, 29). We considered the possibility that loss of I{kappa}Bß could be mediated by the preceding destabilization of {kappa}B-Ras resulting from the absence of p65. Our findings revealed, however, that {kappa}B-Ras expression was generally unaltered in either p65–/– MEFs or p65–/– tissues (Fig. 5B and C). Similar results were obtained with another recently identified I{kappa}Bß-stabilizing protein, ß-arrestin (30) (Fig. 5B). Together, these findings support the notion that I{kappa}Bß stability is directly mediated by p65.



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FIG. 5. I{kappa}Bß stability is regulated by the carboxyl terminus of p65. (A) p65–/– MEFs were infected with either vector control retrovirus vector or virus expressing wild-type p65. Whole-cell extracts were prepared from a mixed population of drug selection-resistant cells, and Western blot assays were performed to probe for p65 and I{kappa}Bß. (B) Western blot assays to probe for {kappa}B-Ras and ß-arrestin in p65+/+ and p65–/– MEFs. {alpha}-Tubulin was used as a loading control. (C) Western blot assays were performed with p65+/+ TNF-{alpha}–/– and p65–/– TNF-{alpha}–/– tissue homogenates to probe for {kappa}B-Ras. (D) Illustration of full-length and C-terminal truncation mutants generated in p65. The mutants are named according to the fragment of p65 expressed. For example, p65({Delta}534) denotes p65 containing amino acids 1 to 534. (E) Western blot assays for I{kappa}Bß (top) and p65 (bottom) in p65–/– MEFs transfected with the indicated p65 truncation mutants. (F) Western blot assay for I{kappa}Bß in p65({Delta}313)-expressing brain, skeletal muscle (skmc), heart, and testis cells from a p65+/+ TNF-{alpha}–/– mouse. Arrows denote forms I{kappa}Bß-I and I{kappa}Bß-IV. (G) Identical lysates as described in panel E were either treated or not treated with phosphatase (PPase), and Western blot assays were subsequently performed to probe for I{kappa}Bß. (H) p65–/– MEFs were transfected with p65({Delta}431) or p65({Delta}313) and subsequently treated with MG-132 or not treated. Western blot assay was then performed to probe for I{kappa}Bß.

Next, p65 deletion mutants were generated (Fig. 5D) and subsequently expressed in p65–/– MEFs in order to map the region in p65 responsible for I{kappa}Bß stability. Since I{kappa} binding is known to occur through the RHD of NF-{kappa}B monomers, intuitively we did not consider the possibility that amino acids carboxyl to the NLS of p65 would contribute to this stability. Although deletion of the first 17 amino acids from the carboxyl terminus ({Delta}534) restored I{kappa}Bß to equivalent levels as that of wild-type p65(FL), to our astonishment, further deletion of the TA1 domain ({Delta}521) was sufficient to cause a minor but reproducible reduction of I{kappa}Bß (Fig. 5E). MG-132 treatment of p65({Delta}521)-expressing cells restored I{kappa}Bß to wild-type levels, indicating that the reduction in I{kappa}Bß observed in p65({Delta}521) cells was due to I{kappa}Bß destabilization (data not shown). Additional destabilization of I{kappa}Bß occurred when residues mapping to the second TA domain of p65 were removed ({Delta}431), and still further loss of I{kappa}Bß was observed upon deletion of residues lying just proximal to the RHD ({Delta}319). However, further deletion of residues to the NLS ({Delta}313) reproducibly had little to no further effect on I{kappa}Bß stability (Fig. 5E). Moreover, reconstitution of p65–/– MEFs with only carboxyl-terminal residues 313 to 551 of p65 was unable to restore I{kappa}Bß expression over that of vector control cells (data not shown), demonstrating that both the RHD and carboxyl residues 319 to 521 of p65 are critical to sustained I{kappa}Bß expression.

Also intriguing was the observation that destabilization of I{kappa}Bß due to carboxyl-terminal deletions of p65 led to the increased expression of a higher-molecular-weight form of I{kappa}Bß that appeared similar to the I{kappa}Bß-IV form that we had earlier identified in mouse tissues. Direct comparison of I{kappa}Bß forms from tissue and p65-reconstituted fibroblasts showed that the higher-molecular-weight form of I{kappa}Bß in fibroblasts expressing p65({Delta}313) migrated to the same apparent molecular weight as I{kappa}Bß-IV from brain and testis tissues (Fig. 5F) and, like I{kappa}Bß-IV in tissues, was sensitive to phosphatase treatment (Fig. 5G). In addition, in contrast to I{kappa}Bß-I, MG-132 treatment was unable to further increase the expression of I{kappa}Bß-IV (Fig. 5H), suggesting that this form of I{kappa}Bß is resistant to 26S proteasome activity. This result is consistent with our previous observation that I{kappa}Bß-IV regulation appeared to be less dependent on p65 compared to I{kappa}Bß-I (Fig. 3A) and was unchanged in p65–/– MEFs treated with various proteasome inhibitors (Fig. 4D). Taken together, these results demonstrate that I{kappa}Bß dependence on p65 occurs due to the stabilization of I{kappa}Bß protein mediated largely through the p65 carboxyl terminus encompassing the TADs and that this regulation is specific to I{kappa}Bß-I.

Expression of I{kappa}Bß but not I{kappa}B{alpha} causes defects in cellular growth and survival. In the final analysis of this study, an attempt was made to understand the physiological relevance underlying the regulation of I{kappa}Bß by p65. Although it is widely believed that p65 is ubiquitously expressed, evidence suggests that p65 expression can be quite low or even undetectable during pregastrula development (21, 62) or in specific cell types in late embryogenesis (73). Based on these findings, as well as our present data, we asked if there was a reason why cells would need to degrade I{kappa} under conditions where p65 expression is either low or absent. To address this question, an HA-tagged I{kappa}Bß retrovirus was generated in order to infect p65–/– MEFs. Attempts to stably express wild-type I{kappa}Bß or an S19/23A mutant by this system or by conventional cytomegalovirus expression plasmids proved unsuccessful. MG-132 treatment partially restored recombinant I{kappa}Bß expression, demonstrating that the inability to express I{kappa}Bß in p65–/– cells resulted from ongoing proteolysis (data not shown). We were, however, able to readily express a truncated form of I{kappa} lacking the first 54 amino acids (Fig. 6A). This suggested that other determinants in the N terminus aside from Ser-19 and Ser-23 are required to mediate I{kappa}Bß proteasome-mediated degradation in p65–/– cells. We refer to this nondegradable mutant as an I{kappa}Bß superrepressor (pBabeI{kappa}Bß-SR).



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FIG. 6. MEFs stably expressing I{kappa}Bß exhibit a growth defect and increased apoptosis. p65–/– MEFs were infected with either a pBabe vector retrovirus or a virus expressing a degradation-resistant form of I{kappa}Bß tagged with an HA epitope (pBabeI{kappa}Bß-SR). (A) Extracts from p65–/–-expressing vector or HA-I{kappa}Bß-SR cells were prepared, and Western blot assays were performed to probe for HA and {alpha}-tubulin. (B) p65–/– cells expressing either the vector control or I{kappa}Bß-SR were treated with TNF-{alpha}, and at the indicated times nuclear extracts were prepared for EMSA. A supershift EMSA was performed with antibodies against p50, p65, or c-Rel to confirm the composition of NF-{kappa}B complexes (arrowheads denote supershifted subunits). (C) p65–/– MEFs were infected with a vector control or I{kappa}Bß-SR-expressing virus. Following 4 days of cell expansion under 1-µg puromycin selection, the cell number was determined in both cell lines. Cell number was normalized to vector control cells, which was set to a value of 100% growing cells. (D) Growth curves of p65+/+ or p65–/– cells expressing either a vector control or I{kappa}Bß-SR. (E) Growth curves identical to those performed in panel B from p65–/– cells infected with a vector control, I{kappa}B{alpha}-SR, or I{kappa}Bß-SR pBabe retrovirus. Cell number was normalized to the vector, which was set to a value of 100%. (F) Cells infected as in panel E were expanded under puromycin selection for 2 days and subsequently stained for Annexin V.

To address whether I{kappa}Bß-SR was functional, p65–/– vector or I{kappa}Bß-SR-expressing cells were treated with TNF-{alpha} and NF-{kappa}B activity was monitored by EMSA. Results showed that even in the absence of p65, an NF-{kappa}B complex was induced by TNF-{alpha} that by supershift analysis was found to contain p50 and c-Rel subunits (Fig. 6B). Expression of the I{kappa}Bß-SR transgene reduced this activation, which confirmed the inhibitory property of the I{kappa}Bß protein. But despite this function, I{kappa}Bß-SR expression was not found to increase the incidence of TNF-{alpha}-mediated killing over that of vector control cells, which suggested that I{kappa}Bß destabilization in p65–/– cells does not simply result to allow compensatory antiapoptotic function from c-Rel-containing complexes.

Clearly observable, however, was that p65–/– MEFs expressing I{kappa}Bß-SR, while under puromycin selection, grew at a considerably slower rate than vector control cells (Fig. 6C). Although not as evident, this growth defect was maintained even in the absence of antibiotic treatment (data not shown). To determine whether this effect was dependent on p65, I{kappa}Bß-SR retroviral infections were repeated in both p65+/+ and p65–/– MEFs. Over time, a growth reduction was also observed in p65+/+ MEFs, but not to the same extent as in p65–/– cells (Fig. 6D). To further examine the specificity of this phenotype, p65–/– MEFs were infected with viruses expressing nondegradable versions of either I{kappa}B{alpha} or I{kappa}Bß and growth rates were monitored compared to vector control cells. Results showed little growth difference between control and I{kappa}B{alpha}-SR-expressing cells, while again I{kappa}Bß-SR cells exhibited a clear growth defect (Fig. 6E). To address whether this defect was related to viability, cells were stained with Annexin V to monitor for apoptosis. Results showed that levels of apoptosis were nearly equivalent between vector control- and I{kappa}B{alpha}-SR-expressing cells. In contrast, apoptosis was increased approximately 65% in cells expressing I{kappa}Bß-SR (Fig. 6F). Collectively, these data demonstrate that I{kappa}Bß expression is linked to cellular growth defects, which provides at least one rationale to explain why I{kappa}Bß downregulation would be required in p65-deficient cells.


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DISCUSSION
 
In contrast to I{kappa}B{alpha}, much less is known regarding the regulation of I{kappa}Bß by NF-{kappa}B. The present study was performed based on the observation that p65–/– MEFs contained dramatically lower levels of I{kappa}Bß. Although our group is not the first to note such a phenomenon (9, 40), a comprehensive study as to how p65 regulates I{kappa}Bß had yet to be undertaken. We have now performed such an analysis, which we believe provides fresh insight into the specificity, mechanism, and biological significance of this regulation.

One question we sought to address was the specificity of I{kappa} regulation by p65. By using fibroblasts null for various components of NF-{kappa}B and its signaling pathway, we determined that regulation of I{kappa}Bß only occurred in cells lacking p65. By this genetic criterion, the data strongly support the idea that I{kappa} regulation is specific to this NF-{kappa}B subunit. In addition to p65, I{kappa}Bß can also associate with c-Rel. It thus remains possible that the inability to detect I{kappa}Bß regulation in c-Rel–/– MEFs may be due to underrepresentation of c-Rel in mouse fibroblasts. Nonetheless, to the best of our knowledge, regulation of I{kappa}Bß in tissues from c-Rel–/– mice has not been reported, which further supports the specificity of p65 in this regulation.

Our findings also revealed the differences in the degree to which I{kappa}B{alpha} and I{kappa}Bß expression is dependent on p65. I{kappa}B{alpha} is the prototypical I{kappa}B protein whose basal and stimulated expression is controlled by p50/p65 DNA binding sites within its promoter (24, 44, 51). From this perspective, it stands to reason why I{kappa}B{alpha} has long been considered to be the most highly regulated I{kappa}B protein by NF-{kappa}B, specifically by the p65 subunit. Our present data, however, challenge this thinking. We found that I{kappa}B{alpha} levels were indeed downregulated in p65–/– primary MEFs and fetal liver cells, but only to about 60% of that of wild-type cells (Fig. 1). Such data support the role of p65 in regulating I{kappa}B{alpha} transcription and/or protein stability (64), but they also highlight the requirement for other factors in this regulation. In comparison, I{kappa}Bß expression was almost completely absent in these same cells, accentuating this protein's dependency on p65. These data provide compelling evidence that of these two I{kappa}B proteins, I{kappa}Bß is the one most tightly regulated by the p65 subunit of NF-{kappa}B.

Analysis into the mechanism of I{kappa}Bß downregulation revealed the regulation by the proteasome complex. Unlike stimulus-induced activation of NF-{kappa}B that requires IKK-dependent phosphorylation of serine residues and subsequent polyubiquitination in the N terminus, we found that proteasome-mediated degradation of I{kappa}Bß was independent of both IKK and serines 19 and 23. However, deletion of the first 54 amino acids stabilized I{kappa}Bß, suggesting that other determinants within the signal response element are required for I{kappa}Bß turnover in cells lacking p65. This regulation is highly reminiscent of the mechanism controlling I{kappa}B{alpha} degradation in response to UV treatment, which also requires the N terminus but not IKK activity or phosphorylation of N-terminal serines (10, 52). Similar to UV-induced degradation of I{kappa}B{alpha} (10), it remains to be seen whether polyubiquitination in the signal response element of I{kappa} is critical for its decay in p65–/– cells.

The facts that the expression of p65 could completely restore I{kappa}Bß in p65–/– MEFs and that {kappa}B-Ras and ß-arrestin levels were unaffected in these cells suggested that p65 was a direct regulator of I{kappa}Bß stabilization (Fig. 5). Data derived from the I{kappa}Bß/p65 crystal structure have shown that much of the binding from the I{kappa}Bß inhibitor ankyrin repeats occurs in the RHD of p65, between residues 191 and 319 (57). Because these structures lacked the TADs of p65, it has not been possible to formally conclude whether residues in the carboxyl half of the RHD participate in I{kappa} binding. To our surprise, however, it is precisely this region of p65, between residues 319 and 534, that was found to be required for maximal I{kappa}Bß stability. Based on these findings, we predict that I{kappa}Bß stabilization is directly regulated by contributions from both the RHD and the carboxyl-terminal half of p65. This carboxyl terminus is likely to adopt a particular conformation when p65 is activated and involved in interactions with the basal transcription machinery and transcriptional coactivators in the nucleus. As an inactive cytoplasmic complex, we foresee that the carboxyl half takes on a different structure as a result of direct or indirect contacts with I{kappa}Bß. Interestingly, S. Ghosh and colleagues had previously proposed that p65 bound to I{kappa}Bß in the cytoplasm exists as an intramolecular structure that, when phosphorylated on serine 276, undergoes a conformational change that is necessary for nuclear CBP/p300 interaction and p65 TAD function (76). In an analogous fashion, we reason that the carboxyl-terminal half of p65 within this intramolecular structure plays a critical role in mediating I{kappa}Bß stability.

Our results also revealed that destabilization of I{kappa} due to removal of the p65 carboxyl half gave way to increased expression of an I{kappa}Bß variant which co-migrated with I{kappa}Bß-IV in tissues and existed in a hyperphosphorylated state (Fig. 5). Intriguingly, unlike I{kappa}Bß-I, which was stabilized by proteasome inhibition in p65–/– MEFs, I{kappa}Bß-IV levels did not increase under these same conditions, nor were levels stabilized by proteasome inhibition in p65–/– cells expressing carboxyl deletion mutants of p65. This implies that hyperphosphorylation of I{kappa}Bß-IV may be a contributing factor in the stability of this I{kappa} form. While phosphorylation is generally considered to target proteins for degradation by the 26S proteasome, studies have also demonstrated the requirement of phosphorylation for protection from the proteasome (28). So perhaps deletion of the p65 carboxyl terminus can lead to I{kappa}Bß hyperphosphorylation, resulting in a protein now refractory to 26S proteasome activity. It will be interesting to ascertain in future studies whether stability associated with I{kappa}Bß-IV is a result of phosphorylation and whether this minor form of I{kappa}Bß that exists in tissues possesses a functional activity distinct from the predominantly expressed I{kappa}Bß-I form.

In the final aspect of our study, we attempted to address the physiological significance underlying the tight control of I{kappa} by p65. Our data revealed that p65–/– MEFs stably expressing a nondegradable form of I{kappa}Bß exhibited an extreme growth defect that could at least partially be attributed to apoptosis (Fig. 6). A similar but less severe phenotype was seen in wild-type cells, which argues that this defect is p65 dependent but also reveals the general susceptibility of cells to I{kappa}Bß expression. Importantly, our data demonstrated that this effect on growth and survival was specific to I{kappa} since a comparable phenotype was not observed in cells expressing a nondegradable form of I{kappa}B{alpha}. Taken together, these results provide a rationale for why I{kappa}Bß may undergo such strong proteolysis in cells lacking p65 and the more pronounced regulation of I{kappa} compared to I{kappa}B{alpha}. Our results indicate that even in p65-containing cells, proper regulation of I{kappa}Bß turnover is likely to be required to circumvent growth defects associated with stable expression of this protein. Although p65 is widely considered to be a constitutively expressed transcription factor, studies have shown that certain development stages early in embryogenesis (21, 62), or specific cell compartments of the thymus (73), do in fact possess low levels of p65. Such regulation of p65 has also been observed in selective neurons throughout development and adulthood (K. Pahan, personal communication). Based on our findings, we predict that it is precisely under such conditions that I{kappa}Bß proteolysis would be required in order to allow the proper development and maintenance of tissue homeostasis.


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ACKNOWLEDGMENTS
 
We thank U. Siebenlist and F. Weih for MEF knockout cell lines, A. Beg for RelA/p65 mice, S. Ghosh for {kappa}B-Ras antibody, W. Miller for ß-arrestin antibody, M. Karin for cell lines and expression plasmids, and A. Baldwin for plasmids and helpful discussion. We also thank S. Acharyya and M. Carathers for technical assistance and the rest of the Guttridge laboratory for support and insight throughout the course of this study.

This work was supported by NIH grant CA97953 and startup funds to D.C.G. and the OSU Up on the Roof Fellowship to J.W.


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FOOTNOTES
 
* Corresponding author. Mailing address: Division of Human Cancer Genetics, 420 W. 12th Avenue, The Ohio State University College of Medicine, Columbus, OH 43210. Phone: (614) 688-3137. Fax: (614) 688-4006. E-mail: guttridge-1{at}medctr.osu.edu. Back


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Molecular and Cellular Biology, June 2005, p. 4956-4968, Vol. 25, No. 12
0270-7306/05/$08.00+0     doi:10.1128/MCB.25.12.4956-4968.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.




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