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Molecular and Cellular Biology, July 2005, p. 5492-5498, Vol. 25, No. 13
0270-7306/05/$08.00+0 doi:10.1128/MCB.25.13.5492-5498.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Microbiology and Molecular Genetics, Harvard Medical School, 200 Longwood Ave., Boston, Massachusetts 02115,1 Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 021152
Received 12 January 2005/ Returned for modification 9 March 2005/ Accepted 8 April 2005
| ABSTRACT |
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| INTRODUCTION |
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The interaction of PA, LF, and EF occurs after PA binds to either of two receptors at the cell surface (7, 24) and is proteolytically activated (20). A cellular protease of the furin family cleaves receptor-bound PA, removing an N-terminal 20-kDa piece (PA20) and leaving a 63-kDa piece (PA63) bound to the receptor. Once freed from PA20, PA63 spontaneously self-associates to form a ring-shaped heptamer (also called the prepore) (17). PA63 is capable of permeabilizing cells to Rb+ and Na+ under acidic conditions (16) and can form pores (channels) in planar phospholipid bilayers even in the absence of receptor (5). Oligomerization of receptor-bound PA63 at the cell surface generates high-affinity sites for EF and LF (19), and these enzymatic moieties bind competitively to the sites via their homologous N-terminal domains (18). Oligomerization of PA63 also triggers its association with cholesterol-containing lipid microdomains (2) and promotes receptor mediated endocytosis and trafficking to an endosomal compartment (10). There, acidic conditions induce a conformational change in the prepore that enables it to form a transmembrane pore. The pore then serves as a passageway for EF and LF to cross to the cytosol (33, 34). In support of this model, lysosomotropic agents and bafilomycin A1 block toxin action in cell culture (10, 11).
The crystal structure of PA suggested a mechanism for pore formation, centering on a mobile loop of domain 2, the 2ß2-2ß3 loop (residues 303 to 322) (22). The seven 2ß2-2ß3 loops of the heptamer were proposed to move to the base of the structure during a pH-dependent conformational rearrangement and to interact there, forming a 14-strand ß-barrel spanning the membrane (Fig. 1A). This model was suggested by the structure of the heptameric pore formed by the
-toxin of Staphylococcus aureus (27) and by consonance of the sequence of the 2ß2-2ß3 loop with an amphipathic ß-barrel (22). Studies in planar phospholipid bilayers provided support for the model (4). The effects of the thiol-specific reagent methanethiosulfonate ethyltrimethylammonium (MTS-ET) on the conductance of pores formed by PA mutants with cysteine residues substituted at various positions in the 2ß2-2ß3 loop corresponded closely to those predicted by the ß-barrel model (Fig. 1B). Extensive inhibition of conductance was seen at positions where the side chain is predicted to contact the lumen of the pore, and little or no inhibition was found at positions where the side chain would contact the membrane bilayer.
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| MATERIALS AND METHODS |
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Preparation of NBD-labeled PA-Cys mutants.
Cys substitution PA mutants from an earlier study (21) were expressed in BL21STAR(DE3) Escherichia coli using pET22b (Invitrogen, CA), which directs the expressed protein to the periplasm (31). Growth and expression of the mutants were carried out in a 5L BIOFLOW 200 fermentor (New Brunswick Scientific, N.J.). ECPM1 medium was used to grow cells to 5 A600 units. Cultures were sparged with air and induced at 30°C with isopropyl-1-thio-ß-D-galactopyranoside. PA was purified from periplasmic extracts by Q-Sepharose and Mono-Q anion-exchange chromatography (Amersham Biosciences, NJ). Five milligrams of Cys-substituted PA was reduced with 20 mM dithiothreitol on ice for 20 min. Dithiothreitol was removed by size exclusion chromatography on a Sephadex G-50 column equilibrated in 50 mM HEPES (N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid; pH 8.0), 50 mM sodium acetate, 150 mM NaCl, and the product was concentrated to 5 mg/ml using a 10-kDa-cutoff Vivaspin concentrator (Vivascience, Germany). IANBD [N,N'-dimethyl-N-(iodoacetyl)-N'-(7-nitrobenz-2-oxa-1,3-diazol)ethylenediamine; Molecular Probes, OR] was then added at a 20-fold molar excess, and the mixture was incubated for 2 h at room temperature. The reaction was quenched by adding 10 mM 2-mercaptoethanol, and the free dye was removed by size exclusion chromatography (G-50 Sephadex). Fractions containing the NBD-labeled protein were pooled and stored at 80°C. The labeling efficiency was estimated by absorbance spectrophotometry (
478 = 25,000 M1 cm1 for NBD, and
280 = 75,670 M1 cm1 for PA83). The measured labeling efficiency for all the mutants was 95 to 105%.
Purified NBD-labeled PA mutants were tested for the ability to mediate the inhibition of protein synthesis by LFNDTA, a fusion of the PA-binding domain of LF (LFN) with the catalytic domain of diphtheria toxin (15). Most of the labeled proteins exhibited a 30 to 50% reduction in activity, relative to wild-type PA. Exceptions were proteins labeled at residues 302, 322, and 323, which showed larger reductions.
Time-lapse intensity measurements of NBD emission. Cells were grown in 150-cm2 tissue culture flasks, washed once, and scraped into a universal buffer (10 mM HEPES, 10 mM sodium acetate, 10 MES [morpholinepropanesulfonic acid], 150 mM NaCl, 2 mM CaCl2, 11 mM glucose, 50 mg/liter bovine serum albumin, at pH 8.0 and 4°C). The cells were pelleted at 500 x g, washed with buffer, suspended at 1 A600 unit, and kept on ice for no longer than 1 h. Cell viability was measured by trypan blue exclusion. The cells were incubated with 50 nM NBD-labeled PA on ice for 1 h at 0.05 A600 unit (final cell concentration) in a 2-ml final volume. They were then washed twice in buffer at 4°C by centrifugation and resuspension and finally were resuspended in 2 ml of cold buffer. The suspension was transferred to a cuvette with a stirring bar and placed in a cuvette holder thermostated at 37°C in an ISS K2 fluorimeter (ISS, IL). The 488-nm line of an Ar+ laser was used to excite NBD, and emission was recorded at 544 nm. A 5x beam expander lens (Thorlabs, NJ) was used to increase the diameter of the laser beam, thereby exciting a larger fraction of the cells and thus increasing the signal-to-noise ratio. In addition, a long-pass 510-nm filter (Omega Optical, VT) was placed before the photomultiplier tube to reduce background scatter of the excitation beam. The fold increase of intensity on cells was calculated as (It/I0) 1, where It is the intensity at time t and I0 is the initial intensity (see Table S1 in the supplemental material). The maximal attainable fluorescence increase in a nonpolar environment was estimated by diluting 10 µl of NBD-labeled PA into 2 ml of dimethyl sulfoxide (DMSO), giving a final concentration of 50 nM. The ratio of the NBD fold fluorescence increase on cells to that in DMSO was then calculated (see Table S2 in the supplemental material).
Treatment with inhibitors and quenchers. In experiments in which cells were pretreated with reagents, the same reagent concentrations were maintained throughout washing steps. Cells were incubated at 37°C with 10 mM ß-methyl cyclodextrin for 1 h, 50 mM cytochalasin D for 35 min, or 1 µM bafilomycin A1 for 35 min before G305C NBD-labeled PA was added. For the dominant negative inhibitor (DNI) treatment, NBD-labeled PA was mixed 1:1 with DNI, and the mixture was incubated with cells on ice to allow binding. Cells were incubated with 2 mg/ml of an equimolar mixture of 5-doxyl and 12-doxyl stearic acid for 1 h at room temperature before G305C NBD-labeled PA was added.
Fluorescence microscopy. CHO cells were plated in a Lab-Tek chamber slide (Nalge Nunc International, IL) at 50,000 cells per well and incubated overnight. The slides were then incubated on ice, and a mixture of 1:1 PA labeled with NBD and PA labeled with Alexa 546 (Molecular Probes, OR) at K563C was added. After incubation for 1 hour on ice, the slides were transferred to a humidified CO2 incubator at 37°C. After 10, 30, or 60 min, cell samples were fixed for imaging (32) and visualized with a Zeiss confocal microscope LSM510META/NLO at a x63 magnification. Images were captured and processed by Zeiss confocal microscope software 3.2.
| RESULTS |
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Our initial measurements focused on residues 303 to 311, corresponding to the descending, amino-proximal strand of the putative ß-barrel (Fig. 1B). With NBD covalently linked to Cys at any of the odd-numbered residues in this region (except 303), there was a gradual increase in fluorescence intensity lasting for more than an hour (Fig. 2 and 3). In contrast, little or no increase in NBD fluorescence intensity was observed at the even-numbered residues tested (304, 306, 308, 310, and 312) or at an irrelevant site (residue 563) in a different domain (domain 3) (Fig. 3). The results in Fig. 3 have been normalized to correct for minor differences in the maximal fluorescence measured when the labeled proteins were placed in DMSO; but such corrections did not change the qualitative picture. Except for position 303, these findings are consistent with the ß-barrel model, given that only the side chains of the odd-numbered residues in this strand are predicted to be in contact with the hydrophobic core of the membrane.
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We used confocal microscopy as an independent method to monitor the fluorescence of NBD at selected sites on PA. Figure 4 shows results from an experiment with PA labeled with NBD at position 305; similar results (not shown) were obtained with a sample labeled at position 307. An equimolar mixture of NBD-labeled G305-PA and PA labeled with Alexa 546 at K563C was added to CHOR1 ATR800 cells plated on a glass slide. The Alexa-labeled PA served as a control and internal standard. Residue 563 is located on the external face of domain 3, and we have found that mutation and derivatization at this site do not affect PA function. After incubation on ice for an hour, the cells were rinsed and transferred to a humidified 37°C CO2 incubator. Samples were withdrawn at intervals over the next hour, and the cells were fixed and processed for examination by confocal microscopy. The intensities of NBD emission and Alexa 546 emission were monitored. As shown in Fig. 4A, almost no NBD fluorescence was seen at time zero, but a signal was clearly evident at 10 min and became progressively stronger at 30 min and 1 h (lane 3). In contrast, the intensity of Alexa 546 fluorescence at K563C remained constant over this time period (lane 2). DAPI (4',6-diamidino-2-phenylindole dihydrochloride) was used to stain the nuclei of the cells (lane 1). Simultaneous monitoring in the red, green, and blue channels of the confocal microscope revealed strong colocalization of NBD and Alexa 546 (lane 4). Figure 4B shows the ratio of NBD fluorescence (green; environment dependent) to Alexa 546 (red; environment independent) with time.
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| DISCUSSION |
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We used the environment-sensitive dye NBD as a covalently attached probe of membrane insertion. Fluorescent probes have the advantage of high sensitivity, and in proteins lacking native cysteines, one can couple a thiol-selective probe to an introduced cysteine, thereby enabling the environment of specified locations within the protein to be monitored. A potential disadvantage of any form of chemical derivatization is the possibility that the probe may alter a function of the protein. While fluorescence lifetime is often used as an environmentally sensitive parameter of NBD, the fluorescence intensity was not sufficiently strong in our experiments with stirred cell suspensions to obtain accurate fluorescence lifetime measurements. Instead, we used the intensity of NBD fluorescence as an inverse measure of the polarity of the dye's microenvironment.
This approach proved useful when we added the NBD-labeled monomeric forms of PA to cells and allowed proteolytic activation of the PA and oligomerization of the PA63 fragment to occur in vivo. In live cells we did not have to activate PA proteolytically or lower the pH, two necessary steps in artificial membrane systems. At four locations within the putative ascending ß-strandthe odd-numbered residues 305, 307, 309, and 311we observed a steady increase in fluorescence continuing over an hour. This increase was documented both in stirred cell suspensions and by confocal microscopy. At alternate, even-numbered locations in this strandresidues 304, 306, 308, 310, and 312there was little or no increase. This pattern of strikingly different effects in alternating residues is similar to that seen in conductance measurements in planar bilayers (4). It is most readily explained by the hypothesis that NBD at the odd-number residues faces the nonpolar environment of a membrane, whereas this dye at the even-numbered residues remains solvent exposed. The findings are thus consistent with a ß-barrel exposed to nonpolar and polar conditions, respectively, on opposite faces.
This interpretation is strongly supported by the effects observed with the membrane-restricted quenchers 5- and 12-doxyl stearic acids and with a dominant-negative form of PA, which co-oligomerizes with wild-type PA and inhibits membrane insertion. Also consistent with the ß-barrel model, and specifically with the results in planar bilayers (4), residues in the putative turn region showed no significant increase in fluorescence and hence remained exposed to solvent. The hypothesis that the increases in NBD fluorescence seen at position 305 and other sites reflect membrane insertion of PA63 within an acidic compartment of the cell is supported by the observation that bafilomycin A1 strongly inhibited the increase.
The overall pattern on the ascending ß-strand was less clear, but the results at eight of the ten sites examined were at least qualitatively consistent with the model. We saw strong increases in NBD fluorescence at positions 316 and 318, small but significant increases at positions 322 and 324, and little or no increase at positions 319, 321, 323, and 325. However, no increase was observed at position 320, where one was expected, and a large increase was seen at position 317, where none was expected. These two deviations, and that at position 303 of the putative descending strand, could have any of several explanations. The fact that no increase was seen at position 303 could be related to the proximity of this site to the membrane-water interface. Position 317, a Gly in the native protein, is preceded by an Ile residue and followed by another Gly, and NBD at position 317 might partition anomalously into the bilayer. Why no increase in NBD fluorescence was seen at position 320 is more difficult to explain, but it might be related to an anomalous effect of NBD derivatization and/or perturbation of the microenvironment at that site by some membrane element. Addition of LFN, representing the minimal PA63-binding, translocatable domain of LF, showed only a slight inhibitory effect on the increase in fluorescence observed with NBD attached to residue 305. The effect of a ligand, such as LF, EF or LFN, on the kinetics of insertion in vivo is not readily predictable from the present data, but there is no reason to expect a major effect. LF and EF bind competitively to sites on oligomeric PA63 species and promote oligomerization of PA63 in solution under certain conditions by competitively displacing PA20. However, we have also observed inhibition of PA63-PA63 interactions by LFN under other conditions (K. Christensen, B. Krantz, and R. J. Collier, unpublished results).
Besides their implications regarding the mechanism of membrane insertion by PA63, our results have relevance to the time course of internalization and membrane insertion of toxin complexes. In the experiment shown in Fig. 1, cells with bound PA-307C-NBD suspended in cold buffer were allowed to warm to 37°C in the thermostated cuvette holder of the spectrofluorimeter. After correction for the lag due to the reduction in quantum yield of NBD with an increase in temperature, there was only a short lag, on the order of a minute at most, before the onset of the steady rise in NBD fluorescence. We interpret this rise, which continued for more than an hour, as reflecting the membrane insertion of an ever-increasing fraction of the pool of bound NBD-labeled cell-associated PA. The lack of synchrony of the membrane insertion process is not surprising, given the multiple steps that precede the insertion and the stochastic nature of those steps. Beauregard and coworkers found that endocytosis of a mutant form of PA that is resistant to proteolytic activation is slow, relative to the wild type, implying that oligomerization of PA63 induces endocytosis (3). Abrami et al. have reported that clustering of anthrax toxin receptor, either with the PA63 heptamer or with an antibody sandwich, causes its association with cholesterol- and glycosphingolipid-rich (lipid rafts) microdomains of the plasma membrane (2). This is apparently necessary and sufficient to trigger endocytosis via a clathrin-dependent pathway. Consistent with this mechanism, we found that depletion of cellular cholesterol with ß-cyclodextrin inhibited insertion of NBD-labeled PA. In a recent report, Abrami et al. showed that membrane insertion by PA occurs in early endosomes, and possibly only in multivesicular regions (1). Delivery of the molecular cargo (LF in this case) to the cytosol is proposed to occur later in the endocytic pathway and to depend on back fusion of internal vesicles of multivesicular late endosomes.
In conclusion, our findings are generally consistent with the ß-barrel model of membrane insertion by PA and provide information regarding the kinetics of internalization and insertion. Identification of residues 305 and 307 as sites where attachment of NBD gives an especially strong signal upon membrane insertion may be valuable in future studies.
| ACKNOWLEDGMENTS |
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We are grateful to D. Borden Lacy and Roman Melnyk for helpful discussion and to Ruth-Anne Pimental for help in preparing reagents. R.J.C. holds equity in PharmAthene, Inc.
| FOOTNOTES |
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Supplemental material for this article may be found at http://mcb.asm.org/. ![]()
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