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Molecular and Cellular Biology, August 2005, p. 6330-6337, Vol. 25, No. 15
0270-7306/05/$08.00+0 doi:10.1128/MCB.25.15.6330-6337.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Cell Signaling Unit, Universitat Pompeu Fabra, Barcelona, Spain,1 Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109,2 The Rockefeller University, New York, New York 100213
Received 6 April 2005/ Returned for modification 4 May 2005/ Accepted 13 May 2005
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When diploid zygotes proceed into meiosis, they transiently arrest in G1 and then initiate one round of DNA replication (premeiotic S phase), leading to cells with a 4C DNA content. Replication is followed by high levels of recombination, chromosome pairing, and two consecutive nuclear divisions, generating four nuclei with a 1C DNA content (for a review, see reference 38). Premeiotic S phase takes longer than mitotic S phase, although, at least in Saccharomyces cerevisiae, the same replication origins are used and the replication forks move at the same rate (8). Although many gene products essential for mitotic DNA synthesis are also required for premeiotic S phase (28), there are some exceptions. For example, in S. cerevisiae, two S-phase cyclins, CLB5 and CLB6, are not required for completion of mitotic DNA synthesis but are essential for premeiotic S phase (34). These differences between mitotic and meiotic DNA synthesis might be related to the period of high recombination that follows premeiotic S phase. In fact, DSBs (double-strand breaks) and thus meiotic recombination do not occur until DNA has been replicated (4).
A cascade of transcription factors is required for the completion of the meiotic program in S. pombe (23). Mei4 has a central role in this transcriptional cascade, being a meiosis-specific transcription factor containing a forkhead DNA-binding domain in the N-terminal region (15). Cells lacking Mei4 arrest before the onset of meiosis I (5, 15). Mes1 is one of the many genes under the transcriptional control of Mei4 (20); mes1 null cells are viable but arrest as binucleated cells before the onset of meiosis II (18, 31). Genetic and biochemical analyses have shown that the cyclin-dependent kinase Cdc2 is required for progression through the meiotic cell cycle (13, 16). We have previously shown that the B-type cyclin Cig2 is involved in the control of premeiotic DNA replication (5) and, together with Cdc13, is required for efficient completion of meiosis II (10, 16, 28). We have now identified a new B-type cyclin, Rem1 (required for entry into meiosis), and shown that it plays a crucial role in meiosis.
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TABLE 1. List of strains used in this work
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5 x 105 cells) were then added to 1 ml of water, centrifuged, and resuspended with 100 µl of water, spotted onto slides, and fixed by heating. Nuclei were stained with DAPI (5 µg/ml). Fluorescence microscopy was carried out on a Nikon Eclipse E600 microscope at x100 magnification. Images were captured by use of an Orca II dual-scan cooled charge-coupled device camera (Hamamatsu), using Hamamatsu AquaCosmos 2.0 software.
Synchronous meiosis. To obtain meiotic cultures in the diploid h+/h strains, single colonies were grown in YE (27) to early stationary phase. The cells were diluted in minimal medium supplemented with 100 µg/ml leucine and grown at 30°C with shaking to 1 x 107 to 2 x 107 cells/ml. Cultures were filtered through a Millipore membrane, washed with 2 volumes of medium without nitrogen, resuspended in medium without nitrogen containing 50 µg/ml leucine and 0.5% glucose, and placed in the shaker at 30°C. When indicated, hydroxyurea (20 mM) was added after 2 and 6 h in the medium without nitrogen.
For the pat1-114 strains, single colonies were grown in YE5S (27) to early stationary phase. The cells were diluted in minimal medium supplemented with 100 µg/ml leucine and grown at 25°C to 1 x 107 to 2 x 107 cells/ml. The cultures were filtered through a Millipore membrane, washed with 2 volumes of medium without nitrogen, and resuspended in medium without nitrogen containing 50 µg/ml leucine. The concentration of the cells was adjusted to 4 x 106 to 6 x 106/ml and incubated at 25°C overnight. NH4Cl and leucine were added to the cultures at 500 µg/ml and 50 µg/ml, respectively, just before the cultures were shifted to 34°C to induce meiosis. When indicated, hydroxyurea (20 mM) was added at the time of the temperature shift and 4 h later.
Gene expression analysis. RNA was prepared by glass bead lysis in the presence of hot phenol, as described previously (7). Equal amounts of RNA (measured by optical density at 260 nm) were separated in formaldehyde agarose gels containing ethidium bromide (30), to confirm equal loading by visualizing rRNA, and transferred to GeneScreen Plus membranes (NEN Life Science Products). Hybridization and washes were performed as recommended by the manufacturer. rem1 and mei4 probes contained the open reading frame of these genes.
For the reverse transcription-PCRs (RT-PCRs), RNA was digested with DNase I for 30 min at 37°C, phenol extracted, and precipitated. Eight micrograms of total RNA was denatured at 65°C for 10 min and then chilled on ice. Reverse transcriptase reactions were carried out (60 min at 42°C, 30 min at 52°C, and 3 min at 94°C) following the manufacturer's guidelines (Promega) in the presence or absence of the enzyme. One microliter of the cDNA was used in the PCRs with primers JA71 (5'-CAAAGTCCTAATTGCAGTGTTTCGG-3') and JA174 (5'-GGAGGATGGATCTCTTCATACTTGC-3').
The transcription start point of rem1 was determined by primer extension using the oligonucleotide JA145 (5'-GCGCAACTCTTTTGTTGTTAGAGTTC-3'), labeled at its 5' end with the fluorochrome 6-FAM, as described elsewhere. Briefly, the labeled primer, complementary to the mRNA template at a site 28 bp downstream from the ATG codon of the open reading frame of rem1, was hybridized with total mRNA from S. pombe diploid cells grown for 4 h in the absence of nitrogen. Extension of the primer with AMV reverse transcriptase (Life Technologies) was carried out. Analysis of the extended products was performed in an automatic DNA sequencer, loading together in the same well the primer extension reaction product and the DNA fragments generated in a sequencing reaction carried out with the same but nonlabeled oligonucleotide. The transcription start point was confirmed by rapid amplification of cDNA ends, cloning of the PCR product, and sequencing of five different clones.
Protein extraction, immunoprecipitation, and in vitro kinase assay. Extracts were prepared as previously described (2). For the Western Blots, 50 µg of extracts were resolved in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (30:0.8 acrylamide:bisacrylamide), transferred to polyvinylidene difluoride membranes, and blotted with the indicated antibody.
For the in vitro kinase assay, protein extracts (50 µg) from cells expressing hemagglutinin (HA)-tagged Rem1 were immunoprecipitated with anti-HA or anti-Cig2 monoclonal antibodies. Immunoprecipitates were washed in NET-N buffer (20 mM Tris [pH 8.0], 100 mM NaCl, 1 mM EDTA, 0.5% NP-40, 1 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride, 5 µg/ml leupeptin, and 5 µg/ml aprotinin) followed by kinase buffer (100 mM HEPES, pH 7.5, 20 mM MgCl2, 4 mM EGTA, 2 mM dithiothreitol) and incubated with histone H1 (1 µg) and 10 µCi of [
-32P]ATP. After 20 min at 30°C, the reactions were stopped with sample buffer, and the proteins were separated by 11% sodium dodecyl sulfate-polyacrylamide gel electrophoresis.
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FIG. 1. Rem1 is a meiosis-specific cyclin. (A) Sequence alignment of Rem1 with other S. pombe cyclins. (B) Synchronously induced diploid (h/h) pat1-114 cells (JA95) were sampled and DNA content measured by flow cytometry. (C) Protein extracts were prepared from synchronous meiosis of pat1-114 cells (JA95), and Rem1-HA was detected by Western blotting using anti-HA antibodies. Anti-Cdc2 antibodies were used as a loading control (bottom panel). S, MI, and MII indicate S phase, meiosis I, and meiosis II, respectively. (D) In vitro Rem1-associated kinase activity (in arbitrary units) was measured in the same protein extracts, using histone H1 as the substrate. (E) Extracts (1 mg) prepared from synchronous meiosis in pat1-114 cells (JA95) at the time indicated at the bottom were immunoprecipitated with anti-HA ( -HA) antibody (12CA5). The presence of Cdc2 in the immunoprecipitate was analyzed in a Western blot. WCE, whole-cell extract. (F) RNA was isolated from the cells represented in panel B, and rem1, mes1, and his3 expression were monitored by RT-PCR. The faster-migrating form of rem1 corresponds to mature mRNA and the slow migrating form to unprocessed mRNA.
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FIG. 2. Rem1 induces a cell cycle arrest in mitotically growing cells. (A) Wild-type cells transformed with rem1 cDNA under the control of a weak nmt promoter (pREP81x) were grown to mid-exponential phase in the presence of thiamine (promoter off). Thiamine was washed out (promoter on), and DNA content was measured by flow cytometry at the times indicated at the right. (B) Micrograph of DAPI-stained cells from panel A after 16 h in the absence of thiamine. Arrowheads indicate cells with mitotic catastrophe.
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mes1 strain, rem1 mRNA was spliced, while splicing was not detected in
mei4 cells blocked before meiosis I (Fig. 3D).
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FIG. 3. Splicing of rem1 mRNA is dependent on Mei4. (A) In the absence of nitrogen, diploid cells transiently arrest in G1 before proceeding into premeiotic S phase and the two nuclear divisions. Mei4 is required at the onset of meiosis I (MI), while Mes1 is required for meiosis II (MII) completion. (B) Synchronously induced diploid h+/h cells PN2304 (wt), JA175 ( mei4), and JA174 ( mes1) were sampled and DNA content measured by flow cytometry. (C) Meiotic progression of the same cultures was measured by nuclear counting of DAPI-stained cells. Closed circles are percentages of cells with one nucleus; open circles, two nuclei; and closed triangles, three or four nuclei. (D) RNA was isolated, and rem1 splicing was monitored by RT-PCR. The faster-migrating form of rem1 corresponds to mature mRNA and the slow-migrating form to unprocessed mRNA.
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mei4 strain was caused directly by the absence of Mei4 or was due to cells being blocked in their meiotic progression, we examined splicing during a premeiotic S-phase block. pat1-114 and pat1-114
mei4 cells were nitrogen-starved to accumulate cells in G1 phase, and the cultures were then shifted to the nonpermissive temperature to induce meiosis. At the same time, each culture was split in two, and hydroxyurea was added to one of the cultures, arresting cells before premeiotic S phase. The other culture progressed synchronously into meiosis, and premeiotic S phase took place 2 h after the cells were placed at the nonpermissive temperature (Fig. 4A). Aliquots of the cultures were taken every hour, and RNA was isolated and analyzed for rem1 and mei4 expression. As shown in Fig. 4B, in the absence of hydroxyurea, the mRNA of both genes was detected at the onset of premeiotic S phase in the pat1-114 cells, with the peak of accumulation occurring just before the first meiotic division (Fig. 4B, 4 h). However, when meiotic progression was blocked by hydroxyurea, transcripts of both genes were present throughout the time course (Fig. 4B, +HU). Furthermore, rem1 mRNA was fully spliced before meiosis I in the untreated pat1-114 culture (Fig. 4C, 4 h, HU) and was also spliced concomitantly with the peak of transcript accumulation in cells arrested in S phase, although mRNA processing was only partial (Fig. 4C, +HU, 4 and 6 h). This result, together with the absence of splicing in a
mei4 mutant, indicates that rem1 splicing was dependent on mei4 function and, unexpectedly, that such splicing can take place during S phase. It should also be noted that in the presence of hydroxyurea, splicing is not as effective as in its absence, since unprocessed mRNA could be detected throughout the time course, which is consistent with the fact that mei4 expression is also decreased in the presence of hydroxyurea (Fig. 4B). Similar results were obtained when meiosis was examined in diploid h+/h cells (data not shown).
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FIG. 4. rem1 is expressed and spliced during extended premeiotic S phase. (A) Synchronous meiosis was induced in haploid pat1-114 (JA247) and pat1-114 mei4 (JA416) cells in the presence (+HU) or absence (HU) of 20 mM hydroxyurea, which was added when the culture was placed at the restrictive temperature and again 4 h later to ensure that DNA synthesis was blocked. DNA content of the cells was measured by flow cytometry. (B) RNA was isolated at the indicated times after shift to the restrictive temperature and analyzed for the expression of rem1 and mei4. (C) rem1 splicing was monitored by RT-PCR.
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rem1 cells.
rem1 zygotes produced four-spore asci with a level of viability similar to that of wild-type cells (>90%), but ade6 gene conversion was threefold reduced relative to that of wild-type cells (Fig. 5A). This decrease in the intragenic recombination was independent of the M26 hot spot, since a decrease was also observed in the absence of the ade6-M26 allele (lower left panel) and when ura1 gene conversion was measured (lower right panel). We observed a similar decrease in meiotic recombination (two- to fivefold) with other meiotic recombination mutants in S. pombe, including the swi5, dmc1, and rhp55 mutants (14; J. Malapeira and J. Ayté, unpublished data). We conclude that Rem1 is required for normal levels of meiotic intragenic recombination. Interestingly enough, Rem1 was not required for meiotic crossing-over when two different intervals (mat1-leu1 and ade6-arg1) were measured (Fig. 5B), indicating the presence of two pathways of recombination during meiosis, with and without crossing-over, with Rem1 having a role only in the latter. The existence of two different pathways was suggested before for budding yeast (1), and the isolation of a mutant (
rem1) that shows an impairment only in meiotic gene conversion keeping wild-type levels of meiotic crossing-over confirms the existence of two distinct pathways.
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FIG. 5. Rem1 is required for normal levels of meiotic recombination. (A) Intragenic ade6 or ura1 recombination (gene conversion) was measured in wild-type (wt) and rem1 strains with the indicated ade6 or ura1 alleles. Data are Ade+ or Ura+ prototrophs/106 viable spores. (B) Frequencies of meiotic crossing-over of two different intervals (mat1-leu1 and ade6-arg1) in wild-type and rem1 cells.
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rem1 cells transiently arrested in G1 with a 2C DNA content proceeded into premeiotic DNA synthesis and then underwent meiosis I and II, with no noticeable difference between the two strains, probably due to the lack of enough synchrony of the diploid h+/h diploid meiosis. Since no cyclins have been identified as being essential for premeiotic S phase in S. pombe, and to further characterize the phenotype produced by the absence of rem1, we tested if mutations in other cyclins might be synthetically lethal with rem1. cig2 has been described to have a role controlling premeiotic S phase (5), and we thought that this cyclin might genetically interact with rem1. This was established when the h+/h
rem1/
rem1
cig2/
cig2 double mutant was found to become blocked before premeiotic S phase (Fig. 6B), although the cells were committed to meiosis, since they had initiated at least part of the meiotic transcriptional program (i.e., the ste11, mat1, and rec8 genes were induced; J. Malapeira and J. Ayté, unpublished data). Furthermore, the cell cycle block could be rescued by a plasmid containing a genomic copy of either cig2 or rem1 (J. Malapeira and J. Ayté, unpublished data). Finally, since rem1 mRNA splicing depends on Mei4, a
cig2
mei4 double mutant should have the same phenotype as a
cig2
rem1 mutant. This was confirmed when an h+/h
cig2/
cig2
mei4/
mei4 double mutant was also found to become blocked before premeiotic S phase (Fig. 7A), since these cells do not have Cig2 and are functionally depleted for mature Rem1 (Fig. 7B). We conclude that Rem1, in the absence of Cig2, is required for premeiotic S phase.
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FIG. 6. Rem1 is required for proper meiotic progression. (A) Synchronous meiosis of pat1-114 (JA66) and pat1-114 rem1 (JA180) cells was sampled, and meiotic nuclear division was monitored by DAPI staining. Closed circles are percentages of cells with 1 nucleus; open circles, two nuclei; and closed triangles, three or four nuclei. The dotted line indicates the timing at which meiosis I takes place in pat1 cells. (B) Synchronously induced meiosis in diploid strains PN2304 (wt), rem1 (JA65), cig2 (JA64), and rem1 cig2 (JA112) was carried out, and DNA content was measured by flow cytometry.
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FIG. 7. mei4 cig2 cells are blocked before premeiotic S phase. (A) Synchronous meiotic cultures of wild-type (wt) (PN2304), cig2 (JA64), mei4 (JA175), or mei4 cig2 (JM137) cells were sampled, and DNA content was analyzed. (B) rem1 splicing was monitored by RT-PCR. The faster-migrating form of rem1 corresponds to mature mRNA and the slow-migrating form to unprocessed mRNA.
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cig2
rem1 cells arrested before premeiotic S phase (Fig. 6B), even though Rem1 apparently was not expressed until after premeiotic S phase in wild-type cells (Fig. 1C and 3D). Given this observation, we examined the regulation of rem1 during meiosis in
cig2 diploid cells. RNA was isolated from wild-type and
cig2 cells undergoing synchronous meiosis (Fig. 6B), and rem1 mRNA splicing was analyzed. As shown in Fig. 8A, rem1 mRNA splicing was not detected until 4 h after wild-type cells were placed in sporulating media. In contrast, splicing in
cig2 cells was induced earlier, just 1 h after cells were nitrogen starved. Furthermore, mature full-length Rem1 was not detected until 4 h after induction of wild-type meiosis (Fig. 8B, upper panel) but was detected as early as 1 h after induction of meiosis in
cig2 cells (Fig. 8B, lower panel). mei4 expression was also induced earlier in
cig2 cells (Fig. 8C). This observation may explain how regulated splicing of rem1 RNA can compensate for the lack of Cig2, because in the absence of Cig2 the earlier appearance of Rem1 allows the cells to proceed through premeiotic DNA synthesis.
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FIG. 8. Rem1 is required for premeiotic S phase in the absence of Cig2. (A) rem1 splicing was monitored by RT-PCR in diploid strains PN2304 (wt) and JA64 ( cig2) as they progressed into meiosis. (B) Protein extracts of wild-type and cig2 diploid cells were prepared from synchronous meiotic cultures at the indicated times. Rem1 was detected by Western blotting using Rem1 antibodies. (C) RNA from the same cultures was isolated, and the expression of mei4 was analyzed by Northern hybridization.
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Meiosis-specific splicing of rem1 is a regulatory mechanism that helps ensure the absence of the mature protein in mitotically growing cells, since even very low levels of Rem1 are toxic in nonmeiotic cells (Fig. 2). Rem1 ensures that fission yeast cells can progress through meiosis, even when the other premeiotic S-phase cyclin, Cig2, is absent (Fig. 6). This is specific to premeiotic S phase, since in vegetatively growing cells cig2, cig1, and puc1 (6, 9, 12) can be simultaneously deleted with only minor effects on the mitotic cycle (22). In wild-type cells, Cig2 acts at the onset of premeiotic S phase, whereas rem1 mRNA splicing does not take place until later in the meiotic cycle, when recombination usually takes place. However, the lack of Cig2 can be complemented by Rem1, because
cig2 cells exhibit almost wild-type meiosis (they show a slight delay at the onset of premeiotic S phase), while
cig2
rem1 cells cannot complete premeiotic S phase (Fig. 6B). rem1 mRNA is spliced earlier during meiosis in
cig2 cells than in wild-type cells, leading to the appearance of Rem1 at premeiotic S phase, which bypasses the lack of Cig2. Thus, during the early stages of meiosis, Cig2 is a negative regulator of rem1 splicing, controlling the orderly appearance of both cyclins: in the presence of Cig2, rem1 mRNA is not spliced, and Rem1 is not present until Cig2 is downregulated. Cig2-associated kinase activity might target a meiotic splicing factor for degradation, as occurs with Cdc18 during the mitotic cell cycle (19, 21), or Cig2-dependent phosphorylation could promote the binding of a yet-unknown protein to rem1 mRNA, blocking splicing. Similar results are observed with another meiotically spliced gene, crs1 (Jo Ann Wise, personal communication), pointing to a general mechanism of splicing regulation during meiosis in fission yeast that has the potential to be different from the regulation of splicing in budding yeast, at least from the mechanistic point of view.
Opposite to the role of Cig2, Mei4 appears to be a positive modulator of rem1 splicing, since in the absence of this transcription factor, rem1 is not spliced, suggesting that Mei4 promotes the transcription of a gene whose product is required for the timely splicing of rem1 (Fig. 9). In fact,
cig2
mei4 cells also arrest before premeiotic S phase (Fig. 7), in agreement with the model depicted in Fig. 9: these cells are functionally depleted for Rem1 and Cig2. Furthermore, in a
cig2 background, mei4 expression is induced as soon as cells are placed in sporulating media, accounting for the earlier splicing of rem1 (Fig. 8C). Although mei4 is necessary for entry into the first meiotic division (15), it is transcribed early in S phase (Fig. 8C) and is required for rem1 mRNA splicing during premeiotic DNA synthesis (Fig. 3D).
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FIG. 9. Model for the regulation of premeiotic S phase by Rem1 and Cig2. Either Rem1 or Cig2 is required for premeiotic S phase. rem1 is transcribed in early premeiotic S phase, but the RNA is not spliced until late S phase. Splicing is induced by Mei4, a transcription factor that controls the meiotic expression of many genes, including a hypothesized meiotic splicing factor (MSF), which would be involved in the splicing of rem1 mRNA. On the other hand, Rem1 appearance is inhibited by Cig2, either by blocking rem1 RNA splicing or by delaying the expression of mei4.
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J.A. is supported by a Ramon y Cajal contract from the Ministerio de Ciencia y Tecnología. This work was supported by a grant from the Ministerio de Ciencia y Tecnologia to J.A. (BMC-2003-00141).
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